LOCUS       NZ_OKQM01000000      1584818 bp    DNA     linear   BCT 28-MAR-2018
DEFINITION  Methanobrevibacter smithii strain C1 CSUR P5817, whole genome
            shotgun sequencing project.
ACCESSION   NZ_OKQM00000000
VERSION     NZ_OKQM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104570327
            Assembly: GCF_900289065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  CONSRTM   Urmite Genomes
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2018) URMITE, 27 Bd J Moulin, 13385 Marseille
            Cedex 05, France, 13385, France
COMMENT     REFSEQ INFORMATION: The reference sequence was derived from
            OKQM00000000.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_OKQM00000000.  This version of the
            project (01) has the accession number NZ_OKQM01000000, and consists
            of sequences OKQM01000001-OKQM01000251.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/28/2018 17:04:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,644
            CDS (total)                       :: 1,600
            Genes (coding)                    :: 1,493
            CDS (coding)                      :: 1,493
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 107
            Pseudo Genes (ambiguous residues) :: 37 of 107
            Pseudo Genes (frameshifted)       :: 52 of 107
            Pseudo Genes (incomplete)         :: 77 of 107
            Pseudo Genes (internal stop)      :: 12 of 107
            Pseudo Genes (multiple problems)  :: 50 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584818
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /strain="C1 CSUR P5817"
                     /isolation_source="Human colostrum"
                     /db_xref="taxon:2173"
WGS         NZ_LT985189
WGS         OKQM01000001-OKQM01000251
//
LOCUS       NZ_BBCP01000000      1742379 bp    DNA     linear   BCT 28-JUN-2020
DEFINITION  Thermogymnomonas acidicola JCM 13583, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBCP00000000
VERSION     NZ_BBCP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000520
            Sequence Read Archive: DRR017722
            Assembly: GCF_001316105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermogymnomonas acidicola JCM 13583
  ORGANISM  Thermogymnomonas acidicola JCM 13583
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Thermogymnomonas.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1742379)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBCP00000000.1.
            The Thermogymnomonas acidicola JCM 13583 whole genome shotgun (WGS)
            project has the project accession NZ_BBCP00000000.  This version of
            the project (01) has the accession number NZ_BBCP01000000, and
            consists of sequences BBCP01000001-BBCP01000027.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 45x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/28/2020 19:52:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,492
            CDSs (total)                      :: 2,444
            Genes (coding)                    :: 1,880
            CDSs (with protein)               :: 1,880
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 564
            CDSs (without protein)            :: 564
            Pseudo Genes (ambiguous residues) :: 0 of 564
            Pseudo Genes (frameshifted)       :: 531 of 564
            Pseudo Genes (incomplete)         :: 38 of 564
            Pseudo Genes (internal stop)      :: 31 of 564
            Pseudo Genes (multiple problems)  :: 34 of 564
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742379
                     /organism="Thermogymnomonas acidicola JCM 13583"
                     /mol_type="genomic DNA"
                     /strain="JCM 13583"
                     /culture_collection="JCM:13583"
                     /type_material="type strain of Thermogymnomonas acidicola"
                     /db_xref="taxon:1295120"
WGS         BBCP01000001-BBCP01000027
WGS_SCAFLD  NZ_BBCP01000001-NZ_BBCP01000027
//
LOCUS       NZ_BBDK01000000      1747526 bp    DNA     linear   BCT 24-JAN-2021
DEFINITION  Acidiplasma cupricumulans JCM 13668, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBDK00000000
VERSION     NZ_BBDK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000438
            Sequence Read Archive: DRR017710
            Assembly: GCF_001316225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidiplasma cupricumulans JCM 13668 = DSM 16651
  ORGANISM  Acidiplasma cupricumulans JCM 13668 = DSM 16651
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1747526)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBDK00000000.1.
            The Acidiplasma cupricumulans JCM 13668 = DSM 16651 whole genome
            shotgun (WGS) project has the project accession NZ_BBDK00000000.
            This version of the project (01) has the accession number
            NZ_BBDK01000000, and consists of sequences
            BBDK01000001-BBDK01000108.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 45x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2021 17:55:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,464
            CDSs (total)                      :: 2,414
            Genes (coding)                    :: 1,771
            CDSs (with protein)               :: 1,771
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 643
            CDSs (without protein)            :: 643
            Pseudo Genes (ambiguous residues) :: 0 of 643
            Pseudo Genes (frameshifted)       :: 610 of 643
            Pseudo Genes (incomplete)         :: 35 of 643
            Pseudo Genes (internal stop)      :: 44 of 643
            Pseudo Genes (multiple problems)  :: 44 of 643
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747526
                     /organism="Acidiplasma cupricumulans JCM 13668 = DSM
                     16651"
                     /mol_type="genomic DNA"
                     /strain="JCM 13668"
                     /culture_collection="JCM:13668"
                     /type_material="type strain of Ferroplasma cupricumulans"
                     /db_xref="taxon:1295373"
WGS         BBDK01000001-BBDK01000108
WGS_SCAFLD  NZ_BBDK01000001-NZ_BBDK01000108
//
LOCUS       NZ_BBBH01000000      2627540 bp    DNA     linear   BCT 06-APR-2022
DEFINITION  Methanoculleus chikugoensis JCM 10825, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBBH00000000
VERSION     NZ_BBBH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000410
            Sequence Read Archive: DRR017687
            Assembly: GCF_001315965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus chikugoensis JCM 10825
  ORGANISM  Methanoculleus chikugoensis JCM 10825
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2627540)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBH00000000.1.
            The Methanoculleus chikugoensis JCM 10825 whole genome shotgun
            (WGS) project has the project accession NZ_BBBH00000000.  This
            version of the project (01) has the accession number
            NZ_BBBH01000000, and consists of sequences
            BBBH01000001-BBBH01000316.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 31x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 04/06/2022 01:08:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,829
            CDSs (total)                      :: 3,776
            Genes (coding)                    :: 2,711
            CDSs (with protein)               :: 2,711
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1,065
            CDSs (without protein)            :: 1,065
            Pseudo Genes (ambiguous residues) :: 0 of 1,065
            Pseudo Genes (frameshifted)       :: 790 of 1,065
            Pseudo Genes (incomplete)         :: 340 of 1,065
            Pseudo Genes (internal stop)      :: 52 of 1,065
            Pseudo Genes (multiple problems)  :: 109 of 1,065
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627540
                     /organism="Methanoculleus chikugoensis JCM 10825"
                     /mol_type="genomic DNA"
                     /strain="JCM 10825"
                     /culture_collection="JCM:10825"
                     /type_material="type strain of Methanoculleus
                     chikugoensis"
                     /db_xref="taxon:1293042"
WGS         BBBH01000001-BBBH01000316
WGS_SCAFLD  NZ_BBBH01000001-NZ_BBBH01000316
//
LOCUS       NZ_BBDO01000000      2286599 bp    DNA     linear   BCT 06-APR-2022
DEFINITION  Vulcanisaeta sp. JCM 16161, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBDO00000000
VERSION     NZ_BBDO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000532
            Sequence Read Archive: DRR017733
            Assembly: GCF_001316285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta sp. JCM 16161
  ORGANISM  Vulcanisaeta sp. JCM 16161
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2286599)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBDO00000000.1.
            The Vulcanisaeta sp. JCM 16161 whole genome shotgun (WGS) project
            has the project accession NZ_BBDO00000000.  This version of the
            project (01) has the accession number NZ_BBDO01000000, and consists
            of sequences BBDO01000001-BBDO01000020.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 50x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 04/06/2022 01:02:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,422
            CDSs (total)                      :: 3,373
            Genes (coding)                    :: 2,857
            CDSs (with protein)               :: 2,857
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 516
            CDSs (without protein)            :: 516
            Pseudo Genes (ambiguous residues) :: 0 of 516
            Pseudo Genes (frameshifted)       :: 473 of 516
            Pseudo Genes (incomplete)         :: 69 of 516
            Pseudo Genes (internal stop)      :: 65 of 516
            Pseudo Genes (multiple problems)  :: 84 of 516
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286599
                     /organism="Vulcanisaeta sp. JCM 16161"
                     /mol_type="genomic DNA"
                     /strain="JCM 16161"
                     /culture_collection="JCM:16161"
                     /db_xref="taxon:1295372"
WGS         BBDO01000001-BBDO01000020
WGS_SCAFLD  NZ_BBDO01000001-NZ_BBDO01000020
//
LOCUS       NZ_BBBI01000000      2422819 bp    DNA     linear   BCT 06-APR-2022
DEFINITION  Vulcanisaeta distributa JCM 11216, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBBI00000000
VERSION     NZ_BBBI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000415
            Sequence Read Archive: DRR017688
            Assembly: GCF_001315985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta distributa JCM 11216
  ORGANISM  Vulcanisaeta distributa JCM 11216
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2422819)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBI00000000.1.
            The Vulcanisaeta distributa JCM 11216 whole genome shotgun (WGS)
            project has the project accession NZ_BBBI00000000.  This version of
            the project (01) has the accession number NZ_BBBI01000000, and
            consists of sequences BBBI01000001-BBBI01000065.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 41x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 04/06/2022 01:22:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,633
            CDSs (total)                      :: 3,586
            Genes (coding)                    :: 3,068
            CDSs (with protein)               :: 3,068
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 518
            CDSs (without protein)            :: 518
            Pseudo Genes (ambiguous residues) :: 0 of 518
            Pseudo Genes (frameshifted)       :: 451 of 518
            Pseudo Genes (incomplete)         :: 80 of 518
            Pseudo Genes (internal stop)      :: 83 of 518
            Pseudo Genes (multiple problems)  :: 86 of 518
            CRISPR Arrays                     :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422819
                     /organism="Vulcanisaeta distributa JCM 11216"
                     /mol_type="genomic DNA"
                     /strain="JCM 11216"
                     /culture_collection="JCM:11216"
                     /db_xref="taxon:1293043"
WGS         BBBI01000001-BBBI01000065
WGS_SCAFLD  NZ_BBBI01000001-NZ_BBBI01000065
//
LOCUS       NZ_BBBJ01000000      2076046 bp    DNA     linear   BCT 06-APR-2022
DEFINITION  Vulcanisaeta distributa JCM 11217, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBBJ00000000
VERSION     NZ_BBBJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000416
            Sequence Read Archive: DRR017689
            Assembly: GCF_001316005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta distributa JCM 11217
  ORGANISM  Vulcanisaeta distributa JCM 11217
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2076046)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBJ00000000.1.
            The Vulcanisaeta distributa JCM 11217 whole genome shotgun (WGS)
            project has the project accession NZ_BBBJ00000000.  This version of
            the project (01) has the accession number NZ_BBBJ01000000, and
            consists of sequences BBBJ01000001-BBBJ01000019.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 47x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 04/06/2022 01:17:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,038
            CDSs (total)                      :: 2,988
            Genes (coding)                    :: 2,545
            CDSs (with protein)               :: 2,545
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 443
            CDSs (without protein)            :: 443
            Pseudo Genes (ambiguous residues) :: 0 of 443
            Pseudo Genes (frameshifted)       :: 412 of 443
            Pseudo Genes (incomplete)         :: 53 of 443
            Pseudo Genes (internal stop)      :: 64 of 443
            Pseudo Genes (multiple problems)  :: 76 of 443
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076046
                     /organism="Vulcanisaeta distributa JCM 11217"
                     /mol_type="genomic DNA"
                     /strain="JCM 11217"
                     /culture_collection="JCM:11217"
                     /db_xref="taxon:1293044"
WGS         BBBJ01000001-BBBJ01000019
WGS_SCAFLD  NZ_BBBJ01000001-NZ_BBBJ01000019
//
LOCUS       NZ_BBBK01000000      2432793 bp    DNA     linear   BCT 06-APR-2022
DEFINITION  Vulcanisaeta souniana JCM 11219, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBBK00000000
VERSION     NZ_BBBK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000417
            Sequence Read Archive: DRR017690
            Assembly: GCF_001316025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta souniana JCM 11219
  ORGANISM  Vulcanisaeta souniana JCM 11219
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2432793)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBK00000000.1.
            The Vulcanisaeta souniana JCM 11219 whole genome shotgun (WGS)
            project has the project accession NZ_BBBK00000000.  This version of
            the project (01) has the accession number NZ_BBBK01000000, and
            consists of sequences BBBK01000001-BBBK01000058.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 37x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 04/06/2022 01:04:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,596
            CDSs (total)                      :: 3,546
            Genes (coding)                    :: 3,063
            CDSs (with protein)               :: 3,063
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 483
            CDSs (without protein)            :: 483
            Pseudo Genes (ambiguous residues) :: 0 of 483
            Pseudo Genes (frameshifted)       :: 440 of 483
            Pseudo Genes (incomplete)         :: 63 of 483
            Pseudo Genes (internal stop)      :: 72 of 483
            Pseudo Genes (multiple problems)  :: 85 of 483
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432793
                     /organism="Vulcanisaeta souniana JCM 11219"
                     /mol_type="genomic DNA"
                     /strain="JCM 11219"
                     /culture_collection="JCM:11219"
                     /type_material="type strain of Vulcanisaeta souniana"
                     /db_xref="taxon:1293586"
WGS         BBBK01000001-BBBK01000058
WGS_SCAFLD  NZ_BBBK01000001-NZ_BBBK01000058
//
LOCUS       NZ_BBBG01000000      2686643 bp    DNA     linear   BCT 03-MAY-2023
DEFINITION  Methanogenium cariaci JCM 10550, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBBG00000000
VERSION     NZ_BBBG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000408
            Sequence Read Archive: DRR017686
            Assembly: GCF_001315945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanogenium cariaci JCM 10550
  ORGANISM  Methanogenium cariaci JCM 10550
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanogenium.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2686643)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBG00000000.1.
            The Methanogenium cariaci JCM 10550 whole genome shotgun (WGS)
            project has the project accession NZ_BBBG00000000.  This version of
            the project (01) has the accession number NZ_BBBG01000000, and
            consists of sequences BBBG01000001-BBBG01000052.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 34x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 05/03/2023 03:17:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,800
            CDSs (total)                      :: 3,747
            Genes (coding)                    :: 3,130
            CDSs (with protein)               :: 3,130
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 617
            CDSs (without protein)            :: 617
            Pseudo Genes (ambiguous residues) :: 0 of 617
            Pseudo Genes (frameshifted)       :: 520 of 617
            Pseudo Genes (incomplete)         :: 112 of 617
            Pseudo Genes (internal stop)      :: 20 of 617
            Pseudo Genes (multiple problems)  :: 35 of 617
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686643
                     /organism="Methanogenium cariaci JCM 10550"
                     /mol_type="genomic DNA"
                     /strain="JCM 10550"
                     /culture_collection="JCM:10550"
                     /type_material="type strain of Methanogenium cariaci"
                     /db_xref="taxon:1293041"
WGS         BBBG01000001-BBBG01000052
WGS_SCAFLD  NZ_BBBG01000001-NZ_BBBG01000052
//
LOCUS       NZ_JBBIRC010000000   1395917 bp    DNA     linear   ENV 23-MAR-2024
DEFINITION  MAG: Ferroplasma sp. isolate PFF170222_bin_340, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBBIRC000000000
VERSION     NZ_JBBIRC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31096825
            Assembly: GCF_037442045.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ferroplasma sp. (subsurface metagenome)
  ORGANISM  Ferroplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma.
REFERENCE   1  (bases 1 to 1395917)
  AUTHORS   Rogers,T.J., Buongiorno,J., Jessen,G.L., Schrenk,M.O.,
            Fordyce,J.A., de Moor,J.M., Ramirez,C.J., Barry,P.H., Yucel,M.,
            Selci,M., Cordone,A., Giovannelli,D. and Lloyd,K.G.
  TITLE     Chemolithoautotroph distributions across the subsurface of a
            convergent margin
  JOURNAL   ISME J 17 (1), 140-150 (2023)
   PUBMED   36257972
REFERENCE   2  (bases 1 to 1395917)
  AUTHORS   Rogers,T.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2022) Microbiology, University of Tennessee, 1311
            Cumberland Avenue, Knoxville, TN 37996, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBIRC000000000.1.
            The Ferroplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBBIRC000000000.  This version of the project
            (01) has the accession number NZ_JBBIRC010000000, and consists of
            sequences JBBIRC010000001-JBBIRC010000091.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 27-MAR-2019
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037442045.1-RS_2024_03_22
            Annotation Date                   :: 03/22/2024 23:00:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,523
            CDSs (total)                      :: 1,478
            Genes (coding)                    :: 1,449
            CDSs (with protein)               :: 1,449
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 8 of 29
            Pseudo Genes (incomplete)         :: 26 of 29
            Pseudo Genes (internal stop)      :: 4 of 29
            Pseudo Genes (multiple problems)  :: 7 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1395917
                     /organism="Ferroplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="PFF170222_bin_340"
                     /isolation_source="fluid and sediments from hot springs
                     and volcanic lakes"
                     /db_xref="taxon:2591003"
                     /environmental_sample
                     /geo_loc_name="Costa Rica"
                     /collection_date="2017-02"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JBBIRC010000001-JBBIRC010000091
WGS_SCAFLD  NZ_JBBIRC010000001-NZ_JBBIRC010000091
//
LOCUS       NZ_JBBIHK010000000   2223355 bp    DNA     linear   ENV 23-MAR-2024
DEFINITION  MAG: Nitrososphaera sp. isolate RVF170221_bin_112, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBBIHK000000000
VERSION     NZ_JBBIHK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31096959
            Assembly: GCF_037447015.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrososphaera sp. (subsurface metagenome)
  ORGANISM  Nitrososphaera sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Nitrososphaera.
REFERENCE   1  (bases 1 to 2223355)
  AUTHORS   Rogers,T.J., Buongiorno,J., Jessen,G.L., Schrenk,M.O.,
            Fordyce,J.A., de Moor,J.M., Ramirez,C.J., Barry,P.H., Yucel,M.,
            Selci,M., Cordone,A., Giovannelli,D. and Lloyd,K.G.
  TITLE     Chemolithoautotroph distributions across the subsurface of a
            convergent margin
  JOURNAL   ISME J 17 (1), 140-150 (2023)
   PUBMED   36257972
REFERENCE   2  (bases 1 to 2223355)
  AUTHORS   Rogers,T.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2022) Microbiology, University of Tennessee, 1311
            Cumberland Avenue, Knoxville, TN 37996, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBIHK000000000.1.
            The Nitrososphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBBIHK000000000.  This version of the project
            (01) has the accession number NZ_JBBIHK010000000, and consists of
            sequences JBBIHK010000001-JBBIHK010000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 27-MAR-2019
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037447015.1-RS_2024_03_22
            Annotation Date                   :: 03/22/2024 23:04:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,593
            CDSs (total)                      :: 2,552
            Genes (coding)                    :: 2,531
            CDSs (with protein)               :: 2,531
            Genes (RNA)                       :: 41
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 0 of 21
            Pseudo Genes (incomplete)         :: 20 of 21
            Pseudo Genes (internal stop)      :: 1 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223355
                     /organism="Nitrososphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="RVF170221_bin_112"
                     /isolation_source="fluid and sediments from hot springs
                     and volcanic lakes"
                     /db_xref="taxon:1971748"
                     /environmental_sample
                     /geo_loc_name="Costa Rica"
                     /collection_date="2017-02"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JBBIHK010000001-JBBIHK010000071
WGS_SCAFLD  NZ_JBBIHK010000001-NZ_JBBIHK010000071
//
LOCUS       NZ_JALHIT010000000   2329089 bp    DNA     linear   ENV 24-MAR-2024
DEFINITION  MAG: Methanothrix sp. isolate 7-NCT_001, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALHIT000000000
VERSION     NZ_JALHIT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26856820
            Assembly: GCF_022839595.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (anaerobic digester metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2329089)
  AUTHORS   Kim,M.
  TITLE     Key players in syntrophic propionate oxidation revealed by
            metagenome-assembled genomes from enriched microbial cultures for
            bioaugmentation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2329089)
  AUTHORS   Kim,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2022) Natural Resource Ecology Laboratory,
            Colorado State University, 1231 East Drive, Fort Collins, CO 80523,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALHIT000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALHIT000000000.  This version of the project
            (01) has the accession number NZ_JALHIT010000000, and consists of
            sequences JALHIT010000001-JALHIT010000295.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA-UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2992.4109631557785x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022839595.1-RS_2024_03_24
            Annotation Date                   :: 03/24/2024 01:08:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,591
            CDSs (total)                      :: 2,552
            Genes (coding)                    :: 2,458
            CDSs (with protein)               :: 2,458
            Genes (RNA)                       :: 39
            tRNAs                             :: 38
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 14 of 94
            Pseudo Genes (incomplete)         :: 81 of 94
            Pseudo Genes (internal stop)      :: 3 of 94
            Pseudo Genes (multiple problems)  :: 4 of 94
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2329089
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="7-NCT_001"
                     /isolation_source="Anaerobic digesters"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="South Korea"
                     /lat_lon="35.1546243 N 128.0994027 E"
                     /collection_date="2020-01-09"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JALHIT010000001-JALHIT010000295
WGS_SCAFLD  NZ_JALHIT010000001-NZ_JALHIT010000295
//
LOCUS       NZ_RCMB01000000      1540195 bp    DNA     linear   BCT 31-MAR-2024
DEFINITION  Candidatus Nitrosotalea sp. TS, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RCMB00000000
VERSION     NZ_RCMB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09786340
            Assembly: GCF_011319465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosotalea sp. TS
  ORGANISM  Candidatus Nitrosotalea sp. TS
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosotaleales;
            Nitrosotaleaceae; Nitrosotalea.
REFERENCE   1  (bases 1 to 1540195)
  AUTHORS   Wang,B., Qin,W., Ren,Y., Zhou,X., Jung,M.Y., Han,P.,
            Eloe-Fadrosh,E.A., Li,M., Zheng,Y., Lu,L., Yan,X., Ji,J., Liu,Y.,
            Liu,L., Heiner,C., Hall,R., Martens-Habbena,W., Herbold,C.W.,
            Rhee,S.K., Bartlett,D.H., Huang,L., Ingalls,A.E., Wagner,M.,
            Stahl,D.A. and Jia,Z.
  TITLE     Expansion of Thaumarchaeota habitat range is correlated with
            horizontal transfer of ATPase operons
  JOURNAL   ISME J 13 (12), 3067-3079 (2019)
   PUBMED   31462715
REFERENCE   2  (bases 1 to 1540195)
  AUTHORS   Wang,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-OCT-2018) State Key Laboratory of Soil and
            Sustainable Agriculture, Chinese Academy of Sciences, No. 71
            Beijing-East Road, Nanjing, Jiangsu 210008, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RCMB00000000.1.
            The Candidatus Nitrosotalea sp. TS whole genome shotgun (WGS)
            project has the project accession NZ_RCMB00000000.  This version of
            the project (01) has the accession number NZ_RCMB01000000, and
            consists of sequences RCMB01000001-RCMB01000024.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-JUN-2012
            Assembly Method        :: Velvet v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011319465.1-RS_2024_03_31
            Annotation Date                   :: 03/31/2024 09:50:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,179
            CDSs (total)                      :: 2,135
            Genes (coding)                    :: 1,983
            CDSs (with protein)               :: 1,983
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 133 of 152
            Pseudo Genes (incomplete)         :: 21 of 152
            Pseudo Genes (internal stop)      :: 4 of 152
            Pseudo Genes (multiple problems)  :: 6 of 152
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540195
                     /organism="Candidatus Nitrosotalea sp. TS"
                     /mol_type="genomic DNA"
                     /strain="TS"
                     /isolation_source="acidic forest soil"
                     /db_xref="taxon:2341020"
                     /geo_loc_name="China: Zhejiang"
                     /collection_date="2011-08-20"
WGS         RCMB01000001-RCMB01000024
WGS_SCAFLD  NZ_RCMB01000001-NZ_RCMB01000024
//
LOCUS       NZ_JAKUUN010000000   1485770 bp    DNA     linear   ENV 02-APR-2024
DEFINITION  MAG: Candidatus Thalassarchaeum betae isolate ALOHA_A2.5_134, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAKUUN000000000
VERSION     NZ_JAKUUN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25999172
            Assembly: GCF_022448685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Thalassarchaeum betae (marine plankton metagenome)
  ORGANISM  Candidatus Thalassarchaeum betae
            Archaea; Methanobacteriati; Thermoplasmatota; Candidatus
            Poseidoniia; Candidatus Poseidoniales; Candidatus
            Thalassarchaeaceae; Candidatus Thalassarchaeum.
REFERENCE   1  (bases 1 to 1485770)
  AUTHORS   Leu,A.O., Eppley,J.M., Burger,A. and Delong,E.F.
  TITLE     Diverse genomic traits differentiate sinking particle-associated
            versus free-living microbes throughout the oligotrophic open ocean
            water column
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1485770)
  AUTHORS   Leu,A.O., Eppley,J.M., Burger,A. and Delong,E.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2022) DeLong Lab, SCOPE, 1950 East West Road,
            Honolulu, HI 96822, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKUUN000000000.1.
            The Candidatus Thalassarchaeum betae whole genome shotgun (WGS)
            project has the project accession NZ_JAKUUN000000000.  This version
            of the project (01) has the accession number NZ_JAKUUN010000000,
            and consists of sequences JAKUUN010000001-JAKUUN010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 86.27x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022448685.1-RS_2024_04_02
            Annotation Date                   :: 04/02/2024 21:54:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,329
            CDSs (total)                      :: 1,276
            Genes (coding)                    :: 1,274
            CDSs (with protein)               :: 1,274
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 2 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1485770
                     /organism="Candidatus Thalassarchaeum betae"
                     /mol_type="genomic DNA"
                     /isolate="ALOHA_A2.5_134"
                     /isolation_source="ocean water sample from Hawaii Ocean
                     Time-series (HOT) cruises"
                     /db_xref="taxon:2599289"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: North Pacific Gyre, Station
                     ALOHA"
                     /lat_lon="22.75 N 158 W"
                     /collection_date="2016-10-17"
                     /metagenome_source="marine plankton metagenome"
                     /metagenomic
WGS         JAKUUN010000001-JAKUUN010000036
WGS_SCAFLD  NZ_JAKUUN010000001-NZ_JAKUUN010000036
//
LOCUS       NZ_JAQXEX010000000   1934170 bp    DNA     linear   ENV 02-APR-2024
DEFINITION  MAG: Poseidonia sp. isolate cluster2-bin.125, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQXEX000000000
VERSION     NZ_JAQXEX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32744840
            Assembly: GCF_029250625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Poseidonia sp. (marine metagenome)
  ORGANISM  Poseidonia sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Candidatus
            Poseidoniia; Candidatus Poseidoniales; Candidatus Poseidoniaceae;
            Candidatus Poseidonia.
REFERENCE   1  (bases 1 to 1934170)
  AUTHORS   Berrios,V., Guajardo,S. and Castro,E.
  TITLE     Metagenome assembled genomes from the Comau Fjord (pt2)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1934170)
  AUTHORS   Berrios,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) Departamento de Microbiologia y Centro de
            Ecologia Integrativa, Castro Lab at UTALCA, Avenida Lircay s/n,
            Talca 43000, Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQXEX000000000.1.
            The Poseidonia sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQXEX000000000.  This version of the project
            (01) has the accession number NZ_JAQXEX010000000, and consists of
            sequences JAQXEX010000001-JAQXEX010000105.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq 6000;Illumina HiSeq
                                      3000;Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029250625.1-RS_2024_04_02
            Annotation Date                   :: 04/02/2024 21:56:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,680
            CDSs (total)                      :: 1,638
            Genes (coding)                    :: 1,632
            CDSs (with protein)               :: 1,632
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 6 of 6
            Pseudo Genes (internal stop)      :: 0 of 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934170
                     /organism="Poseidonia sp."
                     /mol_type="genomic DNA"
                     /isolate="cluster2-bin.125"
                     /isolation_source="water column"
                     /db_xref="taxon:2666344"
                     /environmental_sample
                     /geo_loc_name="Chile: Comau Fjord"
                     /lat_lon="42.39 S 72.44 W"
                     /collection_date="2016/2019"
                     /metagenome_source="marine metagenome"
                     /metagenomic
WGS         JAQXEX010000001-JAQXEX010000105
WGS_SCAFLD  NZ_JAQXEX010000001-NZ_JAQXEX010000105
//
LOCUS       NZ_CALSNW010000000   2087134 bp    DNA     linear   ENV 02-APR-2024
DEFINITION  MAG: Candidatus Poseidonia alphae isolate AG_MB45, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CALSNW000000000
VERSION     NZ_CALSNW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110055894
            Sequence Read Archive: ERR9769282
            Assembly: GCF_943787815.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Poseidonia alphae (marine metagenome)
  ORGANISM  Candidatus Poseidonia alphae
            Archaea; Methanobacteriati; Thermoplasmatota; Candidatus
            Poseidoniia; Candidatus Poseidoniales; Candidatus Poseidoniaceae;
            Candidatus Poseidonia.
REFERENCE   1  (bases 1 to 2087134)
  AUTHORS   Sidhu,C. and Teeling,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUN-2022) Max Planck Institute for Marine
            Microbiology, Celsiusstrasse 1, D-28359 Bremen, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALSNW000000000.1.
            The Candidatus Poseidonia alphae whole genome shotgun (WGS) project
            has the project accession NZ_CALSNW000000000.  This version of the
            project (01) has the accession number NZ_CALSNW010000000, and
            consists of sequences CALSNW010000001-CALSNW010000006.
            This sample represents a MAG derived from the metagenomic sample
            ERS12037245 and assembly ERZ10646538 - 2020-04-08_0.2_micron.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_943787815.1-RS_2024_04_02
            Annotation Date                   :: 04/02/2024 21:55:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,766
            CDSs (total)                      :: 1,720
            Genes (coding)                    :: 1,716
            CDSs (with protein)               :: 1,716
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 0 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087134
                     /organism="Candidatus Poseidonia alphae"
                     /mol_type="genomic DNA"
                     /isolate="AG_MB45"
                     /isolation_source="marine water"
                     /db_xref="taxon:1915863"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /metagenomic
WGS         CALSNW010000001-CALSNW010000006
WGS_SCAFLD  NZ_CALSNW010000001-NZ_CALSNW010000006
//
LOCUS       NZ_JAKUUO010000000   1354625 bp    DNA     linear   ENV 02-APR-2024
DEFINITION  MAG: Candidatus Thalassarchaeum betae isolate ALOHA_A2.5_135, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAKUUO000000000
VERSION     NZ_JAKUUO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25999173
            Assembly: GCF_022448665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Thalassarchaeum betae (marine plankton metagenome)
  ORGANISM  Candidatus Thalassarchaeum betae
            Archaea; Methanobacteriati; Thermoplasmatota; Candidatus
            Poseidoniia; Candidatus Poseidoniales; Candidatus
            Thalassarchaeaceae; Candidatus Thalassarchaeum.
REFERENCE   1  (bases 1 to 1354625)
  AUTHORS   Leu,A.O., Eppley,J.M., Burger,A. and Delong,E.F.
  TITLE     Diverse genomic traits differentiate sinking particle-associated
            versus free-living microbes throughout the oligotrophic open ocean
            water column
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1354625)
  AUTHORS   Leu,A.O., Eppley,J.M., Burger,A. and Delong,E.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2022) DeLong Lab, SCOPE, 1950 East West Road,
            Honolulu, HI 96822, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKUUO000000000.1.
            The Candidatus Thalassarchaeum betae whole genome shotgun (WGS)
            project has the project accession NZ_JAKUUO000000000.  This version
            of the project (01) has the accession number NZ_JAKUUO010000000,
            and consists of sequences JAKUUO010000001-JAKUUO010000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83.29x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022448665.1-RS_2024_04_02
            Annotation Date                   :: 04/02/2024 21:54:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,247
            CDSs (total)                      :: 1,198
            Genes (coding)                    :: 1,194
            CDSs (with protein)               :: 1,194
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 4 of 4
            Pseudo Genes (internal stop)      :: 0 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1354625
                     /organism="Candidatus Thalassarchaeum betae"
                     /mol_type="genomic DNA"
                     /isolate="ALOHA_A2.5_135"
                     /isolation_source="ocean water sample from Hawaii Ocean
                     Time-series (HOT) cruises"
                     /db_xref="taxon:2599289"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: North Pacific Gyre, Station
                     ALOHA"
                     /lat_lon="22.75 N 158 W"
                     /collection_date="2016-11-28"
                     /metagenome_source="marine plankton metagenome"
                     /metagenomic
WGS         JAKUUO010000001-JAKUUO010000064
WGS_SCAFLD  NZ_JAKUUO010000001-NZ_JAKUUO010000064
//
LOCUS       NZ_JBCFBO010000000   3352243 bp    DNA     linear   ENV 29-APR-2024
DEFINITION  MAG: Methanobacterium sp. isolate maxbin2.bin.6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBCFBO000000000
VERSION     NZ_JBCFBO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40733681
            Sequence Read Archive: SRR28122454
            Assembly: GCF_038562635.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (groundwater metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 3352243)
  AUTHORS   Liu,G.
  TITLE     Identifying a novel reductive dehalogenase of
            4_hydroxy_chlorothalonil in Dehalogenimonas species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3352243)
  AUTHORS   Liu,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2024) Department of Microbiology, College of Life
            Sciences, Nanjing Agricultural University, 1 Weigang Street,
            Nanjing 210095, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBCFBO000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBCFBO000000000.  This version of the project
            (01) has the accession number NZ_JBCFBO010000000, and consists of
            sequences JBCFBO010000001-JBCFBO010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 23-JAN-2024
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038562635.1-RS_2024_04_29
            Annotation Date                   :: 04/29/2024 10:59:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,293
            CDSs (total)                      :: 3,249
            Genes (coding)                    :: 3,240
            CDSs (with protein)               :: 3,240
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 3 of 9
            Pseudo Genes (incomplete)         :: 3 of 9
            Pseudo Genes (internal stop)      :: 4 of 9
            Pseudo Genes (multiple problems)  :: 1 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352243
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="maxbin2.bin.6"
                     /isolation_source="4-hydroxychlorothalonil-dehalogenating
                     enrichment culture from groundwater"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="China:Nanjing"
                     /lat_lon="32.06 N 118.79 E"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JBCFBO010000001-JBCFBO010000011
WGS_SCAFLD  NZ_JBCFBO010000001-NZ_JBCFBO010000011
//
LOCUS       NZ_JBCEYP010000000   2125049 bp    DNA     linear   ENV 29-APR-2024
DEFINITION  MAG: Methanothrix soehngenii isolate MillA_1170802msp_mb_bin.51,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JBCEYP000000000
VERSION     NZ_JBCEYP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40975149
            Assembly: GCF_038449035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix soehngenii (bioreactor metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2125049)
  AUTHORS   Nesbo,C.L., Yang,M.I., Sharan,A., Meyer,T. and Edwards,E.A.
  TITLE     Metagenomes and metagenome assembled genomes from anaerobic
            digesters at three Canadian pulp and paper mills
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2125049)
  AUTHORS   Nesbo,C.L. and Edwards,E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2024) Chemical Engineering and Applied Chemistry,
            University of Toronto, 200 College Street, Toronto, Ontario M5S3E5,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBCEYP000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_JBCEYP000000000.  This version of the
            project (01) has the accession number NZ_JBCEYP010000000, and
            consists of sequences JBCEYP010000001-JBCEYP010000190.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 103x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038449035.1-RS_2024_04_29
            Annotation Date                   :: 04/29/2024 08:40:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,230
            CDSs (total)                      :: 2,187
            Genes (coding)                    :: 2,156
            CDSs (with protein)               :: 2,156
            Genes (RNA)                       :: 43
            tRNAs                             :: 42
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 29 of 31
            Pseudo Genes (internal stop)      :: 0 of 31
            Pseudo Genes (multiple problems)  :: 2 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125049
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="MillA_1170802msp_mb_bin.51"
                     /isolation_source="anaerobic bioreactor at pulpmill"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="Canada: Quebec"
                     /lat_lon="48.8062 N 79.2314 W"
                     /collection_date="2017-08-02"
                     /metagenome_source="bioreactor metagenome"
                     /metagenomic
WGS         JBCEYP010000001-JBCEYP010000190
WGS_SCAFLD  NZ_JBCEYP010000001-NZ_JBCEYP010000190
//
LOCUS       NZ_PXYC01000000      1617209 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Nitrosopumilus sp. b2, whole genome shotgun sequencing project.
ACCESSION   NZ_PXYC00000000
VERSION     NZ_PXYC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08660906
            Assembly: GCF_014078535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrosopumilus sp. b2
  ORGANISM  Nitrosopumilus sp. b2
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1617209)
  AUTHORS   Urakawa,H.
  TITLE     Genome of Nitrosopumilus sp. b2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1617209)
  AUTHORS   Urakawa,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) Department of Marine and Ecological
            Sciences, Florida Gulf Coast University, 10501 FGCU Boulevard
            South, Fort Myers, FL 33965-6565, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PXYC00000000.1.
            The Nitrosopumilus sp. b2 whole genome shotgun (WGS) project has
            the project accession NZ_PXYC00000000.  This version of the project
            (01) has the accession number NZ_PXYC01000000, and consists of
            sequences PXYC01000001-PXYC01000013.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Hidetoshi Urakawa.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014078535.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 04:04:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,045
            CDSs (total)                      :: 1,998
            Genes (coding)                    :: 1,989
            CDSs (with protein)               :: 1,989
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 2 of 9
            Pseudo Genes (incomplete)         :: 7 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617209
                     /organism="Nitrosopumilus sp. b2"
                     /mol_type="genomic DNA"
                     /strain="b2"
                     /isolation_source="ocean water"
                     /db_xref="taxon:2109908"
                     /geo_loc_name="USA: Florida"
                     /collection_date="2012"
WGS         PXYC01000001-PXYC01000013
WGS_SCAFLD  NZ_MU078702-NZ_MU078706
//
LOCUS       NZ_PXYB01000000      1791993 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Nitrosopumilus sp. b1, whole genome shotgun sequencing project.
ACCESSION   NZ_PXYB00000000
VERSION     NZ_PXYB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08660901
            Assembly: GCF_014078545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrosopumilus sp. b1
  ORGANISM  Nitrosopumilus sp. b1
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1791993)
  AUTHORS   Urakawa,H.
  TITLE     Genome of Nitrosopumilus sp. b1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1791993)
  AUTHORS   Urakawa,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) Department of Marine and Ecological
            Sciences, Florida Gulf Coast University, 10501 FGCU Boulevard
            South, Fort Myers, FL 33965-6565, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PXYB00000000.1.
            The Nitrosopumilus sp. b1 whole genome shotgun (WGS) project has
            the project accession NZ_PXYB00000000.  This version of the project
            (01) has the accession number NZ_PXYB01000000, and consists of
            sequences PXYB01000001-PXYB01000129.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Hidetoshi Urakawa.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014078545.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 04:07:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,222
            CDSs (total)                      :: 2,169
            Genes (coding)                    :: 2,120
            CDSs (with protein)               :: 2,120
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 1 of 49
            Pseudo Genes (incomplete)         :: 48 of 49
            Pseudo Genes (internal stop)      :: 0 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791993
                     /organism="Nitrosopumilus sp. b1"
                     /mol_type="genomic DNA"
                     /strain="b1"
                     /isolation_source="ocean water"
                     /db_xref="taxon:2109907"
                     /geo_loc_name="USA: Florida"
                     /collection_date="2012"
WGS         PXYB01000001-PXYB01000129
WGS_SCAFLD  NZ_MU078707-NZ_MU078815
//
LOCUS       NZ_PXYD01000000      1788667 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Nitrosopumilus sp. b3, whole genome shotgun sequencing project.
ACCESSION   NZ_PXYD00000000
VERSION     NZ_PXYD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08660913
            Assembly: GCF_014078525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrosopumilus sp. b3
  ORGANISM  Nitrosopumilus sp. b3
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1788667)
  AUTHORS   Urakawa,H., Qin,W. and Zheng,Y.
  TITLE     Genome of Nitrosopumilus sp. b3
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1788667)
  AUTHORS   Urakawa,H., Qin,W. and Zheng,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) Department of Marine and Ecological
            Sciences, Florida Gulf Coast University, 10501 FGCU Boulevard
            South, Fort Myers, FL 33965-6565, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PXYD00000000.1.
            The Nitrosopumilus sp. b3 whole genome shotgun (WGS) project has
            the project accession NZ_PXYD00000000.  This version of the project
            (01) has the accession number NZ_PXYD01000000, and consists of
            sequences PXYD01000001-PXYD01000015.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Hidetoshi Urakawa.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014078525.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 04:07:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,209
            CDSs (total)                      :: 2,161
            Genes (coding)                    :: 2,153
            CDSs (with protein)               :: 2,153
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 0 of 8
            Pseudo Genes (incomplete)         :: 8 of 8
            Pseudo Genes (internal stop)      :: 0 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788667
                     /organism="Nitrosopumilus sp. b3"
                     /mol_type="genomic DNA"
                     /strain="b3"
                     /isolation_source="ocean water"
                     /db_xref="taxon:2109909"
                     /geo_loc_name="USA: Florida"
                     /collection_date="2012"
WGS         PXYD01000001-PXYD01000015
WGS_SCAFLD  NZ_MU078693-NZ_MU078701
//
LOCUS       NZ_CACZXI010000000   2192947 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG13036, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACZXI000000000
VERSION     NZ_CACZXI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151173
            Assembly: GCF_902785165.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2192947)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACZXI000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACZXI000000000.  This version
            of the project (01) has the accession number NZ_CACZXI010000000,
            and consists of sequences CACZXI010000001-CACZXI010000121.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902785165.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:37:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,179
            CDSs (total)                      :: 2,146
            Genes (coding)                    :: 2,082
            CDSs (with protein)               :: 2,082
            Genes (RNA)                       :: 33
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 30
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 30 of 64
            Pseudo Genes (incomplete)         :: 31 of 64
            Pseudo Genes (internal stop)      :: 4 of 64
            Pseudo Genes (multiple problems)  :: 1 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192947
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG13036"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACZXI010000001-CACZXI010000121
WGS_SCAFLD  NZ_CACZXI010000001-NZ_CACZXI010000121
//
LOCUS       NZ_QIMI01000000      1953566 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Sulfolobus sp. B1, whole genome shotgun sequencing project.
ACCESSION   NZ_QIMI00000000
VERSION     NZ_QIMI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09205290
            Assembly: GCF_007050195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus sp. B1
  ORGANISM  Sulfolobus sp. B1
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 1953566)
  AUTHORS   Yun,J., Xu,P., Xu,J., Dai,X., Wang,Y., Zheng,X.Z., Cao,C., Yi,Q.Y.,
            Zhu,Y., Wang,L., Dong,Z., Huang,Y., Huang,L. and Du,W.
  TITLE     Cross-interface Injection: A General Nanoliter Liquid Handling
            Method Applied to Single Cells Genome Amplification Automated
            Nanoliter Liquid Handling Applied to Single Cell Multiple
            Displacement Amplification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1953566)
  AUTHORS   Yun,J., Xu,P., Xu,J., Dai,X., Wang,Y., Zheng,X.Z., Cao,C., Yi,Q.Y.,
            Zhu,Y., Wang,L., Dong,Z., Huang,Y., Huang,L. and Du,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2018) State Key Laboratory of Microbial
            Resources, Institute of Microbiology, CAS, No. 1 Beichen West Road,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QIMI00000000.1.
            The Sulfolobus sp. B1 whole genome shotgun (WGS) project has the
            project accession NZ_QIMI00000000.  This version of the project
            (01) has the accession number NZ_QIMI01000000, and consists of
            sequences QIMI01000001-QIMI01000374.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1000x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007050195.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:38:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,215
            CDSs (total)                      :: 2,186
            Genes (coding)                    :: 2,013
            CDSs (with protein)               :: 2,013
            Genes (RNA)                       :: 29
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 173
            CDSs (without protein)            :: 173
            Pseudo Genes (ambiguous residues) :: 0 of 173
            Pseudo Genes (frameshifted)       :: 18 of 173
            Pseudo Genes (incomplete)         :: 150 of 173
            Pseudo Genes (internal stop)      :: 11 of 173
            Pseudo Genes (multiple problems)  :: 6 of 173
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953566
                     /organism="Sulfolobus sp. B1"
                     /mol_type="genomic DNA"
                     /strain="B1"
                     /isolation_source="single cell amplified by MDA; hot
                     spring"
                     /db_xref="taxon:2200888"
                     /geo_loc_name="Costa Rica: northwestern"
                     /lat_lon="10.77 N 85.34 W"
                     /collection_date="2010-10"
WGS         QIMI01000001-QIMI01000374
WGS_SCAFLD  NZ_QIMI01000001-NZ_QIMI01000374
//
LOCUS       NZ_JAGGSG010000000   1937847 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Thermococcus sp. isolate AUK016, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGSG000000000
VERSION     NZ_JAGGSG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18353512
            Assembly: GCF_021159205.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1937847)
  AUTHORS   Speth,D.R., Yu,F.B., Connon,S.A., Lim,S., Magyar,J.S., Pena,M.E.,
            Quake,S.R. and Orphan,V.J.
  TITLE     Microbial community of recently discovered Auka vent field sheds
            light on vent biogeography and evolutionary history of thermophily
  JOURNAL   bioRxiv (2022) In press
  REMARK    DOI: 10.1101/2021.08.02.454472
REFERENCE   2  (bases 1 to 1937847)
  AUTHORS   Speth,D.R. and Orphan,V.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Geology and Planetary Sciences, California
            Institute of Technology, 1200 E California Blvd, MC100-23,
            Pasadena, CA 91125, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGSG000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAGGSG000000000.  This version of the project
            (01) has the accession number NZ_JAGGSG010000000, and consists of
            sequences JAGGSG010000001-JAGGSG010000250.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 164.23x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021159205.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:48:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,192
            CDSs (total)                      :: 2,142
            Genes (coding)                    :: 2,071
            CDSs (with protein)               :: 2,071
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 17 of 71
            Pseudo Genes (incomplete)         :: 58 of 71
            Pseudo Genes (internal stop)      :: 8 of 71
            Pseudo Genes (multiple problems)  :: 11 of 71
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937847
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="AUK016"
                     /isolation_source="marine hydrothermal sediment"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Mexico, Pescadero Basin"
                     /lat_lon="23.957043 N 108.862273 W"
                     /collection_date="2015-04-18"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JAGGSG010000001-JAGGSG010000250
WGS_SCAFLD  NZ_JAGGSG010000001-NZ_JAGGSG010000250
//
LOCUS       NZ_JADIIN010000000   2347078 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanobrevibacter arboriphilus isolate bin4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JADIIN000000000
VERSION     NZ_JADIIN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16521388
            Assembly: GCF_015351715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter arboriphilus (biocathode metagenome)
  ORGANISM  Methanobrevibacter arboriphilus
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2347078)
  AUTHORS   Matturro,B.
  TITLE     Dehalococcoides mccartyi of a TCE/Cr reducing biochatode
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2347078)
  AUTHORS   Matturro,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2020) National Research Council, Water Research
            Institute, IRSA-CNR, Via Salaria km 29, 300 - C.P. 10, Rome, Rome
            00015, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADIIN000000000.1.
            The Methanobrevibacter arboriphilus whole genome shotgun (WGS)
            project has the project accession NZ_JADIIN000000000.  This version
            of the project (01) has the accession number NZ_JADIIN010000000,
            and consists of sequences JADIIN010000001-JADIIN010000083.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015351715.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:44:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,048
            CDSs (total)                      :: 2,012
            Genes (coding)                    :: 1,998
            CDSs (with protein)               :: 1,998
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 0 of 14
            Pseudo Genes (incomplete)         :: 13 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347078
                     /organism="Methanobrevibacter arboriphilus"
                     /mol_type="genomic DNA"
                     /isolate="bin4"
                     /isolation_source="TCE/Cr reducing biocathode"
                     /db_xref="taxon:39441"
                     /environmental_sample
                     /geo_loc_name="Italy:Rome"
                     /lat_lon="41 N 12 E"
                     /collection_date="2019-09"
                     /metagenome_source="biocathode metagenome"
                     /metagenomic
WGS         JADIIN010000001-JADIIN010000083
WGS_SCAFLD  NZ_JADIIN010000001-NZ_JADIIN010000083
//
LOCUS       NZ_CAKUZP010000000   1777524 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_
            MoBio_Fiber_C_4_7003.198, whole genome shotgun sequencing project.
ACCESSION   NZ_CAKUZP000000000
VERSION     NZ_CAKUZP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13497628
            Sequence Read Archive: ERR7738546
            Assembly: GCF_934718295.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (human gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1777524)
  AUTHORS   Sonnenburg L,J., Merrill D,B., Olm R,M. and Carter M,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2022) Stanford University School of Medicine,
            Sonnenburg Lab, Department of Microbiology and Immunology Stanford
            University, School of Medicine Fairchild Science Building, Rm D307a
            299 Campus Drive Stanford, CA 94305-5124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKUZP000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAKUZP000000000.  This version
            of the project (01) has the accession number NZ_CAKUZP010000000,
            and consists of sequences CAKUZP010000001-CAKUZP010000026.
            uncultured Methanobrevibacter sp. MAG assembled and binned from
            ERR7738546.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934718295.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:53:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,747
            CDSs (total)                      :: 1,709
            Genes (coding)                    :: 1,687
            CDSs (with protein)               :: 1,687
            Genes (RNA)                       :: 38
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 4 of 22
            Pseudo Genes (incomplete)         :: 18 of 22
            Pseudo Genes (internal stop)      :: 3 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777524
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY
                     _K77_MERGED__Pilot_MoBio_Fiber_C_4_7003.198"
                     /isolation_source="human feces"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKUZP010000001-CAKUZP010000026
WGS_SCAFLD  NZ_CAKUZP010000001-NZ_CAKUZP010000026
//
LOCUS       NZ_JADQBZ010000000   2869447 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanolobus sp. isolate Soudan_28, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JADQBZ000000000
VERSION     NZ_JADQBZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16091057
            Assembly: GCF_016278365.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanolobus sp. (mine drainage metagenome)
  ORGANISM  Methanolobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 2869447)
  AUTHORS   Telling,J., Alexander,S., Gralnick,J., Sherwood Lollar,B. and
            Toner,B.
  TITLE     Novel microbial groups drive productivity in an Archean Iron
            formation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2869447)
  AUTHORS   Sheik,C., Badalamenti,J. and Bond,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2020) Biology, University of Minnesota Duluth,
            2205 East 5th st, Duluth, MN 55812, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADQBZ000000000.1.
            The Methanolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JADQBZ000000000.  This version of the project
            (01) has the accession number NZ_JADQBZ010000000, and consists of
            sequences JADQBZ010000001-JADQBZ010000019.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAY-2018
            Assembly Method        :: SPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016278365.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:50:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,811
            CDSs (total)                      :: 2,765
            Genes (coding)                    :: 2,742
            CDSs (with protein)               :: 2,742
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 8 of 23
            Pseudo Genes (incomplete)         :: 14 of 23
            Pseudo Genes (internal stop)      :: 7 of 23
            Pseudo Genes (multiple problems)  :: 5 of 23
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869447
                     /organism="Methanolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="Soudan_28"
                     /isolation_source="brine fluids"
                     /db_xref="taxon:1874737"
                     /environmental_sample
                     /geo_loc_name="USA: Soudan Iron Mine, Minnesota"
                     /lat_lon="47.82333 N 92.23722 W"
                     /collection_date="2014-11-10"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         JADQBZ010000001-JADQBZ010000019
WGS_SCAFLD  NZ_JADQBZ010000001-NZ_JADQBZ010000019
//
LOCUS       NZ_JAMOQU010000000   1916042 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Thermococcus sp. isolate 4561-380_maxbin2_scaf2bin.010, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAMOQU000000000
VERSION     NZ_JAMOQU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27358132
            Assembly: GCF_027063845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1916042)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1916042)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMOQU000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAMOQU000000000.  This version of the project
            (01) has the accession number NZ_JAMOQU010000000, and consists of
            sequences JAMOQU010000001-JAMOQU010000134.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 124.31x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027063845.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:55:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,250
            CDSs (total)                      :: 2,201
            Genes (coding)                    :: 2,146
            CDSs (with protein)               :: 2,146
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 1 of 55
            Pseudo Genes (incomplete)         :: 52 of 55
            Pseudo Genes (internal stop)      :: 2 of 55
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1916042
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="4561-380_maxbin2_scaf2bin.010"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Gulf of California, Guaymas
                     Basin"
                     /collection_date="2009"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JAMOQU010000001-JAMOQU010000134
WGS_SCAFLD  NZ_JAMOQU010000001-NZ_JAMOQU010000134
//
LOCUS       NZ_CALLMO010000000   1657956 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanosphaera sp. isolate
            ERR1600540_bin.104_CONCOCT_v1.1_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CALLMO000000000
VERSION     NZ_CALLMO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14083651
            Sequence Read Archive: ERR1600540
            Assembly: GCF_938005785.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanosphaera sp. (human gut metagenome)
  ORGANISM  uncultured Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera; environmental samples.
REFERENCE   1  (bases 1 to 1657956)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALLMO000000000.1.
            The uncultured Methanosphaera sp. whole genome shotgun (WGS)
            project has the project accession NZ_CALLMO000000000.  This version
            of the project (01) has the accession number NZ_CALLMO010000000,
            and consists of sequences CALLMO010000001-CALLMO010000215.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135668.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run ERR1600540.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_938005785.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:57:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,603
            CDSs (total)                      :: 1,568
            Genes (coding)                    :: 1,507
            CDSs (with protein)               :: 1,507
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 2 of 61
            Pseudo Genes (incomplete)         :: 55 of 61
            Pseudo Genes (internal stop)      :: 4 of 61
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657956
                     /organism="uncultured Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="ERR1600540_bin.104_CONCOCT_v1.1_MAG"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:262501"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CALLMO010000001-CALLMO010000215
WGS_SCAFLD  NZ_CALLMO010000001-NZ_CALLMO010000215
//
LOCUS       NZ_CAKVLX010000000   1958177 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_Mo
            Bio_Fiber-Hadza-Nepal_F_1_RAJ0018YZ.14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAKVLX000000000
VERSION     NZ_CAKVLX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13489400
            Sequence Read Archive: ERR7739005
            Assembly: GCF_934758005.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (human gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1958177)
  AUTHORS   Sonnenburg L,J., Merrill D,B., Olm R,M. and Carter M,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2022) Stanford University School of Medicine,
            Sonnenburg Lab, Department of Microbiology and Immunology Stanford
            University, School of Medicine Fairchild Science Building, Rm D307a
            299 Campus Drive Stanford, CA 94305-5124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKVLX000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAKVLX000000000.  This version
            of the project (01) has the accession number NZ_CAKVLX010000000,
            and consists of sequences CAKVLX010000001-CAKVLX010000026.
            uncultured Methanobrevibacter sp. MAG assembled and binned from
            ERR7739005.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934758005.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:52:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,859
            CDSs (total)                      :: 1,820
            Genes (coding)                    :: 1,800
            CDSs (with protein)               :: 1,800
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 8 of 20
            Pseudo Genes (incomplete)         :: 14 of 20
            Pseudo Genes (internal stop)      :: 1 of 20
            Pseudo Genes (multiple problems)  :: 3 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958177
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K
                     77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_F_1_RAJ0018YZ.14"
                     /isolation_source="human feces"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKVLX010000001-CAKVLX010000026
WGS_SCAFLD  NZ_CAKVLX010000001-NZ_CAKVLX010000026
//
LOCUS       NZ_CAJOJM010000000   1998254 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  Methanobrevibacter sp. UBA188 isolate Cattle_2_mag_9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAJOJM000000000
VERSION     NZ_CAJOJM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8030303
            Assembly: GCF_905234905.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      Methanobrevibacter sp. UBA188
  ORGANISM  Methanobrevibacter sp. UBA188
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1998254)
  AUTHORS   Vasoya,D., Smith,R., Warr,A., Glendinning,L. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2021) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJOJM000000000.1.
            The Methanobrevibacter sp. UBA188 whole genome shotgun (WGS)
            project has the project accession NZ_CAJOJM000000000.  This version
            of the project (01) has the accession number NZ_CAJOJM010000000,
            and consists of sequences CAJOJM010000001-CAJOJM010000108.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905234905.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:47:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,979
            CDSs (total)                      :: 1,944
            Genes (coding)                    :: 1,904
            CDSs (with protein)               :: 1,904
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 10 of 40
            Pseudo Genes (incomplete)         :: 29 of 40
            Pseudo Genes (internal stop)      :: 1 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998254
                     /organism="Methanobrevibacter sp. UBA188"
                     /mol_type="genomic DNA"
                     /isolate="Cattle_2_mag_9"
                     /isolation_source="metagenome"
                     /db_xref="taxon:1915473"
                     /environmental_sample
WGS         CAJOJM010000001-CAJOJM010000108
WGS_SCAFLD  NZ_CAJOJM010000001-NZ_CAJOJM010000108
//
LOCUS       NZ_JAFWEU010000000   1545400 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG5674, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFWEU000000000
VERSION     NZ_JAFWEU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16346141
            Assembly: GCF_017512765.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1545400)
  AUTHORS   Xie,F.
  TITLE     An integrated gene catalog and over 10,000 metagenome-assembled
            genomes from the gastrointestinal microbiome of ruminants
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1545400)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2021) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFWEU000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFWEU000000000.  This version of the
            project (01) has the accession number NZ_JAFWEU010000000, and
            consists of sequences JAFWEU010000001-JAFWEU010000108.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017512765.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:44:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,708
            CDSs (total)                      :: 1,680
            Genes (coding)                    :: 1,650
            CDSs (with protein)               :: 1,650
            Genes (RNA)                       :: 28
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 4 of 30
            Pseudo Genes (incomplete)         :: 21 of 30
            Pseudo Genes (internal stop)      :: 5 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545400
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG5674"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="sheep"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFWEU010000001-JAFWEU010000108
WGS_SCAFLD  NZ_JAFWEU010000001-NZ_JAFWEU010000108
//
LOCUS       NZ_CALFSA010000000   2246125 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanofollis sp. isolate
            SRR1562008_bin.121_CONCOCT_v1.1_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CALFSA000000000
VERSION     NZ_CALFSA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14037501
            Sequence Read Archive: SRR1562008
            Assembly: GCF_937919355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanofollis sp. (food production metagenome)
  ORGANISM  uncultured Methanofollis sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanofollis; environmental samples.
REFERENCE   1  (bases 1 to 2246125)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALFSA000000000.1.
            The uncultured Methanofollis sp. whole genome shotgun (WGS) project
            has the project accession NZ_CALFSA000000000.  This version of the
            project (01) has the accession number NZ_CALFSA010000000, and
            consists of sequences CALFSA010000001-CALFSA010000244.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135666.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR1562008.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937919355.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:59:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,422
            CDSs (total)                      :: 2,374
            Genes (coding)                    :: 2,305
            CDSs (with protein)               :: 2,305
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 1 of 69
            Pseudo Genes (incomplete)         :: 67 of 69
            Pseudo Genes (internal stop)      :: 2 of 69
            Pseudo Genes (multiple problems)  :: 1 of 69
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246125
                     /organism="uncultured Methanofollis sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR1562008_bin.121_CONCOCT_v1.1_MAG"
                     /isolation_source="food production metagenome"
                     /db_xref="taxon:262500"
                     /environmental_sample
                     /metagenome_source="food production metagenome"
                     /metagenomic
WGS         CALFSA010000001-CALFSA010000244
WGS_SCAFLD  NZ_CALFSA010000001-NZ_CALFSA010000244
//
LOCUS       NZ_CAMJBP010000000   1932253 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR14812340_bin.22_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMJBP000000000
VERSION     NZ_CAMJBP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110653524
            Sequence Read Archive: SRR14812340
            Assembly: GCF_946403945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (pig gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1932253)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMJBP000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAMJBP000000000.  This version
            of the project (01) has the accession number NZ_CAMJBP010000000,
            and consists of sequences CAMJBP010000001-CAMJBP010000050.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP139819.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR14812340.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_946403945.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:57:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,153
            CDSs (total)                      :: 2,118
            Genes (coding)                    :: 2,096
            CDSs (with protein)               :: 2,096
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 4 of 22
            Pseudo Genes (incomplete)         :: 14 of 22
            Pseudo Genes (internal stop)      :: 5 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932253
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR14812340_bin.22_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMJBP010000001-CAMJBP010000050
WGS_SCAFLD  NZ_CAMJBP010000001-NZ_CAMJBP010000050
//
LOCUS       NZ_CABUVJ010000000   1661817 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanosphaera sp. isolate MGYG-HGUT-04410, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CABUVJ000000000
VERSION     NZ_CABUVJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5853917
            Sequence Read Archive: ERR1136988
            Assembly: GCF_902494985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanosphaera sp. (human gut metagenome)
  ORGANISM  uncultured Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera; environmental samples.
REFERENCE   1  (bases 1 to 1661817)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABUVJ000000000.1.
            The uncultured Methanosphaera sp. whole genome shotgun (WGS)
            project has the project accession NZ_CABUVJ000000000.  This version
            of the project (01) has the accession number NZ_CABUVJ010000000,
            and consists of sequences CABUVJ010000001-CABUVJ010000245.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902494985.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:01:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,515
            CDSs (total)                      :: 1,477
            Genes (coding)                    :: 1,426
            CDSs (with protein)               :: 1,426
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 3 of 51
            Pseudo Genes (incomplete)         :: 48 of 51
            Pseudo Genes (internal stop)      :: 1 of 51
            Pseudo Genes (multiple problems)  :: 1 of 51
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661817
                     /organism="uncultured Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-04410"
                     /isolation_source="human gut"
                     /db_xref="taxon:262501"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CABUVJ010000001-CABUVJ010000245
WGS_SCAFLD  NZ_CABUVJ010000001-NZ_CABUVJ010000245
//
LOCUS       NZ_CALGFC010000000   2358562 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR3330209_bin.54_CONCOCT_v1.1_MAG, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CALGFC000000000
VERSION     NZ_CALGFC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14081819
            Sequence Read Archive: SRR3330209
            Assembly: GCF_937881195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobrevibacter sp. (metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2358562)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALGFC000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CALGFC000000000.  This version
            of the project (01) has the accession number NZ_CALGFC010000000,
            and consists of sequences CALGFC010000001-CALGFC010000073.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135665.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR3330209.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937881195.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,981
            CDSs (total)                      :: 1,945
            Genes (coding)                    :: 1,927
            CDSs (with protein)               :: 1,927
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 2 of 18
            Pseudo Genes (incomplete)         :: 16 of 18
            Pseudo Genes (internal stop)      :: 0 of 18
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358562
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR3330209_bin.54_CONCOCT_v1.1_MAG"
                     /isolation_source="metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="metagenome"
                     /metagenomic
WGS         CALGFC010000001-CALGFC010000073
WGS_SCAFLD  NZ_CALGFC010000001-NZ_CALGFC010000073
//
LOCUS       NZ_CAMVPN010000000   2611014 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR8387718_bin.77_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMVPN000000000
VERSION     NZ_CAMVPN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111499063
            Sequence Read Archive: SRR8387718
            Assembly: GCF_947169325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobrevibacter sp. (sheep gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2611014)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMVPN000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAMVPN000000000.  This version
            of the project (01) has the accession number NZ_CAMVPN010000000,
            and consists of sequences CAMVPN010000001-CAMVPN010000145.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP141523.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR8387718.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_947169325.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:59:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,387
            CDSs (total)                      :: 2,363
            Genes (coding)                    :: 2,315
            CDSs (with protein)               :: 2,315
            Genes (RNA)                       :: 24
            tRNAs                             :: 22
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 2 of 48
            Pseudo Genes (incomplete)         :: 42 of 48
            Pseudo Genes (internal stop)      :: 5 of 48
            Pseudo Genes (multiple problems)  :: 1 of 48
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611014
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR8387718_bin.77_metaWRAP_v1.3_MAG"
                     /isolation_source="sheep gut metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="sheep gut metagenome"
                     /metagenomic
WGS         CAMVPN010000001-CAMVPN010000145
WGS_SCAFLD  NZ_CAMVPN010000001-NZ_CAMVPN010000145
//
LOCUS       NZ_CAKLBW010000000    591341 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Candidatus Nanopusillus massiliensis strain Marseille-Q6268, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAKLBW000000000
VERSION     NZ_CAKLBW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA10801704
            Assembly: GCF_920984865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nanopusillus massiliensis
  ORGANISM  Candidatus Nanopusillus massiliensis
            Archaea; Nanobdellota; Candidatus Nanoarchaeia; Nanoarchaeales;
            Nanopusillaceae.
REFERENCE   1  (bases 1 to 591341)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2021) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKLBW000000000.1.
            The Candidatus Nanopusillus massiliensis whole genome shotgun (WGS)
            project has the project accession NZ_CAKLBW000000000.  This version
            of the project (01) has the accession number NZ_CAKLBW010000000,
            and consists of sequences CAKLBW010000001-CAKLBW010000593.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_920984865.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:56:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 837
            Genes (coding)                    :: 733
            CDSs (with protein)               :: 733
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 15 of 104
            Pseudo Genes (frameshifted)       :: 43 of 104
            Pseudo Genes (incomplete)         :: 47 of 104
            Pseudo Genes (internal stop)      :: 28 of 104
            Pseudo Genes (multiple problems)  :: 25 of 104
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..591341
                     /organism="Candidatus Nanopusillus massiliensis"
                     /mol_type="genomic DNA"
                     /strain="Marseille-Q6268"
                     /type_material="type strain of Candidatus Nanopusillus
                     massiliensis"
                     /db_xref="taxon:2897163"
WGS         CAKLBW010000001-CAKLBW010000593
WGS_SCAFLD  NZ_OV100765
//
LOCUS       NZ_CALGLQ010000000   2342737 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: uncultured Methanomethylovorans sp. isolate
            SRR3330212_bin.187_CONCOCT_v1.1_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CALGLQ000000000
VERSION     NZ_CALGLQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14081856
            Sequence Read Archive: SRR3330212
            Assembly: GCF_937930185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanomethylovorans sp. (metagenome)
  ORGANISM  uncultured Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans; environmental samples.
REFERENCE   1  (bases 1 to 2342737)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALGLQ000000000.1.
            The uncultured Methanomethylovorans sp. whole genome shotgun (WGS)
            project has the project accession NZ_CALGLQ000000000.  This version
            of the project (01) has the accession number NZ_CALGLQ010000000,
            and consists of sequences CALGLQ010000001-CALGLQ010000347.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135665.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR3330212.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937930185.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:01:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,469
            CDSs (total)                      :: 2,424
            Genes (coding)                    :: 2,351
            CDSs (with protein)               :: 2,351
            Genes (RNA)                       :: 45
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 2 of 73
            Pseudo Genes (incomplete)         :: 70 of 73
            Pseudo Genes (internal stop)      :: 5 of 73
            Pseudo Genes (multiple problems)  :: 2 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342737
                     /organism="uncultured Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR3330212_bin.187_CONCOCT_v1.1_MAG"
                     /isolation_source="metagenome"
                     /db_xref="taxon:183759"
                     /environmental_sample
                     /metagenome_source="metagenome"
                     /metagenomic
WGS         CALGLQ010000001-CALGLQ010000347
WGS_SCAFLD  NZ_CALGLQ010000001-NZ_CALGLQ010000347
//
LOCUS       NZ_BBDM01000000      2443876 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Vulcanisaeta sp. JCM 14467, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBDM00000000
VERSION     NZ_BBDM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000523
            Sequence Read Archive: DRR017730
            Assembly: GCF_001316245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta sp. JCM 14467
  ORGANISM  Vulcanisaeta sp. JCM 14467
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2443876)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBDM00000000.1.
            The Vulcanisaeta sp. JCM 14467 whole genome shotgun (WGS) project
            has the project accession NZ_BBDM00000000.  This version of the
            project (01) has the accession number NZ_BBDM01000000, and consists
            of sequences BBDM01000001-BBDM01000025.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 48x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316245.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:08:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,540
            CDSs (total)                      :: 3,490
            Genes (coding)                    :: 3,134
            CDSs (with protein)               :: 3,134
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 310 of 356
            Pseudo Genes (incomplete)         :: 52 of 356
            Pseudo Genes (internal stop)      :: 15 of 356
            Pseudo Genes (multiple problems)  :: 21 of 356
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443876
                     /organism="Vulcanisaeta sp. JCM 14467"
                     /mol_type="genomic DNA"
                     /strain="JCM 14467"
                     /culture_collection="JCM:14467"
                     /db_xref="taxon:1295370"
WGS         BBDM01000001-BBDM01000025
WGS_SCAFLD  NZ_BBDM01000001-NZ_BBDM01000025
//
LOCUS       NZ_JAEMPR010000000   2155334 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Thermofilum sp. isolate 2016_B01_C_6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEMPR000000000
VERSION     NZ_JAEMPR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16495487
            Assembly: GCF_022759215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hydrothermal vent metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 2155334)
  AUTHORS   Mckay,L.J., Nigro,O.D., Dlakic,M., Luttrell,K.M., Rusch,D.B.,
            Fields,M.W. and Inskeep,W.P.
  TITLE     Intense viral pressure promotes genomic variability in biofilm
            forming Sulfurihydrogenbium in Yellowstone's hottest ecosystems
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2155334)
  AUTHORS   Mckay,L.J., Nigro,O.D., Dlakic,M., Luttrell,K.M., Rusch,D.B.,
            Fields,M.W. and Inskeep,W.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2020) Land Resources & Environmental Sciences,
            Montana State University, 313 Barnard Hall, Bozeman, MT 59717, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEMPR000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAEMPR000000000.  This version of the project
            (01) has the accession number NZ_JAEMPR010000000, and consists of
            sequences JAEMPR010000001-JAEMPR010000225.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 41.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022759215.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:28:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,624
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,556
            CDSs (with protein)               :: 2,556
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 3 of 30
            Pseudo Genes (incomplete)         :: 28 of 30
            Pseudo Genes (internal stop)      :: 2 of 30
            Pseudo Genes (multiple problems)  :: 2 of 30
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155334
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="2016_B01_C_6"
                     /isolation_source="biofilm attached to a sub-lacustrine
                     hydrothermal vent"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone Lake, Wyoming"
                     /lat_lon="44.51090 N 110.35660 W"
                     /collection_date="2016-08-16"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JAEMPR010000001-JAEMPR010000225
WGS_SCAFLD  NZ_JAEMPR010000001-NZ_JAEMPR010000225
//
LOCUS       NZ_CAMBIW010000000   1746504 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanobrevibacter ruminantium isolate
            SRR17382098_bin.10_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMBIW000000000
VERSION     NZ_CAMBIW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110403054
            Sequence Read Archive: SRR17382098
            Assembly: GCF_945867735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (pig gut metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1746504)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMBIW000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_CAMBIW000000000.  This version
            of the project (01) has the accession number NZ_CAMBIW010000000,
            and consists of sequences CAMBIW010000001-CAMBIW010000112.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137783.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR17382098.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_945867735.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:54:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,724
            CDSs (total)                      :: 1,689
            Genes (coding)                    :: 1,674
            CDSs (with protein)               :: 1,674
            Genes (RNA)                       :: 35
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 4 of 15
            Pseudo Genes (incomplete)         :: 10 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746504
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="SRR17382098_bin.10_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMBIW010000001-CAMBIW010000112
WGS_SCAFLD  NZ_CAMBIW010000001-NZ_CAMBIW010000112
//
LOCUS       NZ_JAHLZE010000000   2099928 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Methanobrevibacter sp. TMH8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAHLZE000000000
VERSION     NZ_JAHLZE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19700590
            Assembly: GCF_020148105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter sp. TMH8
  ORGANISM  Methanobrevibacter sp. TMH8
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2099928)
  AUTHORS   Pore,S.D., Hivarkar,S., Deore,K.S., Lanjekar,V.B.,
            Dhakephalkar,P.K. and Dagar,S.
  TITLE     Genomic analysis of a novel Methanobrevibacter sp. strain TMH8
            cultured from termite gut
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2099928)
  AUTHORS   Pore,S.D., Hivarkar,S., Deore,K.S., Lanjekar,V.B.,
            Dhakephalkar,P.K. and Dagar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2021) Bioenergy, MACS Agaharkar Research
            Institute, Pune, G G Agarkar Road, Pune, Maharashtra 411004, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHLZE000000000.1.
            The Methanobrevibacter sp. TMH8 whole genome shotgun (WGS) project
            has the project accession NZ_JAHLZE000000000.  This version of the
            project (01) has the accession number NZ_JAHLZE010000000, and
            consists of sequences JAHLZE010000001-JAHLZE010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020148105.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:54:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,838
            CDSs (total)                      :: 1,799
            Genes (coding)                    :: 1,775
            CDSs (with protein)               :: 1,775
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099928
                     /organism="Methanobrevibacter sp. TMH8"
                     /mol_type="genomic DNA"
                     /strain="TMH8"
                     /isolation_source="gut"
                     /host="Odontotermes obesus"
                     /db_xref="taxon:2848611"
                     /geo_loc_name="India: Pune"
                     /collection_date="2015"
                     /collected_by="Sumit Singh Dagar"
WGS         JAHLZE010000001-JAHLZE010000038
WGS_SCAFLD  NZ_JAHLZE010000001-NZ_JAHLZE010000038
//
LOCUS       NZ_CAMKMG010000000   2009982 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanobrevibacter ruminantium isolate
            SRR14812370_bin.45_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMKMG000000000
VERSION     NZ_CAMKMG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110653665
            Sequence Read Archive: SRR14812370
            Assembly: GCF_946413845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (pig gut metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2009982)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMKMG000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_CAMKMG000000000.  This version
            of the project (01) has the accession number NZ_CAMKMG010000000,
            and consists of sequences CAMKMG010000001-CAMKMG010000085.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP139819.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR14812370.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_946413845.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:57:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,938
            CDSs (total)                      :: 1,908
            Genes (coding)                    :: 1,884
            CDSs (with protein)               :: 1,884
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 26
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 8 of 24
            Pseudo Genes (incomplete)         :: 15 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009982
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="SRR14812370_bin.45_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMKMG010000001-CAMKMG010000085
WGS_SCAFLD  NZ_CAMKMG010000001-NZ_CAMKMG010000085
//
LOCUS       NZ_CAMJXB010000000   1515522 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanobrevibacter gottschalkii isolate
            SRR14812370_bin.10_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMJXB000000000
VERSION     NZ_CAMJXB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110653635
            Sequence Read Archive: SRR14812370
            Assembly: GCF_946409615.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter gottschalkii (pig gut metagenome)
  ORGANISM  Methanobrevibacter gottschalkii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1515522)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMJXB000000000.1.
            The Methanobrevibacter gottschalkii whole genome shotgun (WGS)
            project has the project accession NZ_CAMJXB000000000.  This version
            of the project (01) has the accession number NZ_CAMJXB010000000,
            and consists of sequences CAMJXB010000001-CAMJXB010000098.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP139819.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR14812370.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_946409615.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 11:52:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,640
            CDSs (total)                      :: 1,610
            Genes (coding)                    :: 1,581
            CDSs (with protein)               :: 1,581
            Genes (RNA)                       :: 30
            tRNAs                             :: 29
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 0 of 29
            Pseudo Genes (incomplete)         :: 28 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515522
                     /organism="Methanobrevibacter gottschalkii"
                     /mol_type="genomic DNA"
                     /isolate="SRR14812370_bin.10_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:190974"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMJXB010000001-CAMJXB010000098
WGS_SCAFLD  NZ_CAMJXB010000001-NZ_CAMJXB010000098
//
LOCUS       NZ_JAJFAY010000000   5682248 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Haladaptatus sp. DYF46, whole genome shotgun sequencing project.
ACCESSION   NZ_JAJFAY000000000
VERSION     NZ_JAJFAY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22447313
            Assembly: GCF_021083305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. DYF46
  ORGANISM  Haladaptatus sp. DYF46
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 5682248)
  AUTHORS   Cui,H.-L.
  TITLE     Haladaptatus sp. nov., isolated from a saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5682248)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-OCT-2021) School of Food and Biological Engineering,
            Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang,
            Zhenjiang, Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJFAY000000000.1.
            The Haladaptatus sp. DYF46 whole genome shotgun (WGS) project has
            the project accession NZ_JAJFAY000000000.  This version of the
            project (01) has the accession number NZ_JAJFAY010000000, and
            consists of sequences JAJFAY010000001-JAJFAY010000029.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 4
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021083305.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:05:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,797
            CDSs (total)                      :: 5,730
            Genes (coding)                    :: 5,656
            CDSs (with protein)               :: 5,656
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 21 of 74
            Pseudo Genes (incomplete)         :: 57 of 74
            Pseudo Genes (internal stop)      :: 17 of 74
            Pseudo Genes (multiple problems)  :: 19 of 74
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5682248
                     /organism="Haladaptatus sp. DYF46"
                     /mol_type="genomic DNA"
                     /strain="DYF46"
                     /isolation_source="sediment"
                     /db_xref="taxon:2886041"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2017-07"
WGS         JAJFAY010000001-JAJFAY010000029
WGS_SCAFLD  NZ_JAJFAY010000001-NZ_JAJFAY010000029
//
LOCUS       NZ_CAUJAM010000000   1834388 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Methanobrevibacter sp. V14, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAUJAM000000000
VERSION     NZ_CAUJAM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114236496
            Assembly: GCF_963082475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter sp. V14
  ORGANISM  Methanobrevibacter sp. V14
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1834388)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2023) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAUJAM000000000.1.
            The Methanobrevibacter sp. V14 whole genome shotgun (WGS) project
            has the project accession NZ_CAUJAM000000000.  This version of the
            project (01) has the accession number NZ_CAUJAM010000000, and
            consists of sequences CAUJAM010000001-CAUJAM010000019.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963082475.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:03:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,923
            CDSs (total)                      :: 1,889
            Genes (coding)                    :: 1,856
            CDSs (with protein)               :: 1,856
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 30
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 16 of 33
            Pseudo Genes (incomplete)         :: 14 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 2 of 33
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834388
                     /organism="Methanobrevibacter sp. V14"
                     /mol_type="genomic DNA"
                     /strain="V14"
                     /isolation_source="human dental pulp"
                     /db_xref="taxon:3064280"
                     /geo_loc_name="France"
                     /collection_date="2022"
WGS         CAUJAM010000001-CAUJAM010000019
WGS_SCAFLD  NZ_CAUJAM010000001-NZ_CAUJAM010000019
//
LOCUS       NZ_BROP01000000      4355419 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Haladaptatus sp. T7, whole genome shotgun sequencing project.
ACCESSION   NZ_BROP00000000
VERSION     NZ_BROP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00093446
            Sequence Read Archive: DRR107975
            Assembly: GCF_026008575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. T7
  ORGANISM  Haladaptatus sp. T7
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1
  AUTHORS   Suzuki,M., Soulenthone,P., Miyamoto,M., Tachibana,Y. and Kasuya,K.
  TITLE     Degradation of biodegradable polyesters by an extremely halophilic
            archaeon
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4355419)
  AUTHORS   Suzuki,M. and Kasuya,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2022) Contact:Miwa Suzuki Gunma University,
            Center for Food Science and Wellness; Tenjincho 1-5-1, Kiryu, Gunma
            376-8515, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BROP00000000.1.
            The Haladaptatus sp. T7 whole genome shotgun (WGS) project has the
            project accession NZ_BROP00000000.  This version of the project
            (01) has the accession number NZ_BROP01000000, and consists of
            sequences BROP01000001-BROP01000020.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.15.3
            Genome Coverage       :: 25x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026008575.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:04:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,405
            CDSs (total)                      :: 4,350
            Genes (coding)                    :: 4,329
            CDSs (with protein)               :: 4,329
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 8 of 21
            Pseudo Genes (incomplete)         :: 13 of 21
            Pseudo Genes (internal stop)      :: 7 of 21
            Pseudo Genes (multiple problems)  :: 6 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4355419
                     /organism="Haladaptatus sp. T7"
                     /mol_type="genomic DNA"
                     /strain="T7"
                     /isolation_source="Salt"
                     /db_xref="taxon:2029368"
                     /geo_loc_name="Taiwan:Qigu District"
                     /lat_lon="23.15 N 120.11 E"
                     /collection_date="2008-02-22"
WGS         BROP01000001-BROP01000020
WGS_SCAFLD  NZ_BROP01000001-NZ_BROP01000020
//
LOCUS       NZ_JASKKM010000000   2827312 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanolobus sp. isolate DJKA54_ANT-KO_bin.4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JASKKM000000000
VERSION     NZ_JASKKM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33401177
            Assembly: GCF_030154145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanolobus sp. (subsurface metagenome)
  ORGANISM  Methanolobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 2827312)
  AUTHORS   Amundson,K. and Wilkins,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) Soil and Crop Sciences, Colorado State
            University, 1170 Campus Delivery, Fort Collins, CO 80523, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASKKM000000000.1.
            The Methanolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JASKKM000000000.  This version of the project
            (01) has the accession number NZ_JASKKM010000000, and consists of
            sequences JASKKM010000001-JASKKM010000143.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: idba-ud v. 1.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 2.7x
            Sequencing Technology  :: Illumnina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030154145.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:05:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,675
            CDSs (total)                      :: 2,631
            Genes (coding)                    :: 2,598
            CDSs (with protein)               :: 2,598
            Genes (RNA)                       :: 44
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 1 of 33
            Pseudo Genes (incomplete)         :: 29 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 1 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827312
                     /organism="Methanolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DJKA54_ANT-KO_bin.4"
                     /isolation_source="Produced fluids from hydraulically
                     fractured shales"
                     /db_xref="taxon:1874737"
                     /environmental_sample
                     /geo_loc_name="USA: Colorado"
                     /lat_lon="40.411582 N 104.348363 W"
                     /collection_date="2018"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JASKKM010000001-JASKKM010000143
WGS_SCAFLD  NZ_JASKKM010000001-NZ_JASKKM010000143
//
LOCUS       NZ_CAUJAN010000000   2299297 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Methanobrevibacter sp. V74, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAUJAN000000000
VERSION     NZ_CAUJAN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114236497
            Assembly: GCF_963082495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter sp. V74
  ORGANISM  Methanobrevibacter sp. V74
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2299297)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2023) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAUJAN000000000.1.
            The Methanobrevibacter sp. V74 whole genome shotgun (WGS) project
            has the project accession NZ_CAUJAN000000000.  This version of the
            project (01) has the accession number NZ_CAUJAN010000000, and
            consists of sequences CAUJAN010000001-CAUJAN010000015.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963082495.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:05:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,315
            CDSs (total)                      :: 2,273
            Genes (coding)                    :: 2,254
            CDSs (with protein)               :: 2,254
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 5 of 19
            Pseudo Genes (incomplete)         :: 12 of 19
            Pseudo Genes (internal stop)      :: 6 of 19
            Pseudo Genes (multiple problems)  :: 4 of 19
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299297
                     /organism="Methanobrevibacter sp. V74"
                     /mol_type="genomic DNA"
                     /strain="V74"
                     /isolation_source="human dental pulp"
                     /db_xref="taxon:3064279"
                     /geo_loc_name="France"
                     /collection_date="2022"
WGS         CAUJAN010000001-CAUJAN010000015
WGS_SCAFLD  NZ_CAUJAN010000001-NZ_CAUJAN010000015
//
LOCUS       NZ_JAXJXH010000000   2467967 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate DOME_MAG_6778, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXJXH000000000
VERSION     NZ_JAXJXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38021698
            Assembly: GCF_036307605.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2467967)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Interconnectedness of farmer and livestock microbiomes and
            resistomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2467967)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2023) The Edison Family Center for Genome
            Sciences & Systems Biology, Washington University School of
            Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXJXH000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAXJXH000000000.  This version of the
            project (01) has the accession number NZ_JAXJXH010000000, and
            consists of sequences JAXJXH010000001-JAXJXH010000207.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036307605.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:09:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,412
            CDSs (total)                      :: 2,369
            Genes (coding)                    :: 2,322
            CDSs (with protein)               :: 2,322
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 3 of 47
            Pseudo Genes (incomplete)         :: 39 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 1 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467967
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="DOME_MAG_6778"
                     /isolation_source="stool"
                     /host="Bos taurus"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="USA: Marshfield, WI"
                     /lat_lon="44.69 N 90.17 W"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAXJXH010000001-JAXJXH010000207
WGS_SCAFLD  NZ_JAXJXH010000001-NZ_JAXJXH010000207
//
LOCUS       NZ_JAXJXF010000000   2242411 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate DOME_MAG_5775, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXJXF000000000
VERSION     NZ_JAXJXF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38021696
            Assembly: GCF_036307625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2242411)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Interconnectedness of farmer and livestock microbiomes and
            resistomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2242411)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2023) The Edison Family Center for Genome
            Sciences & Systems Biology, Washington University School of
            Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXJXF000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAXJXF000000000.  This version of the
            project (01) has the accession number NZ_JAXJXF010000000, and
            consists of sequences JAXJXF010000001-JAXJXF010000167.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036307625.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:13:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,132
            CDSs (total)                      :: 2,103
            Genes (coding)                    :: 2,069
            CDSs (with protein)               :: 2,069
            Genes (RNA)                       :: 29
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 27
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 5 of 34
            Pseudo Genes (incomplete)         :: 31 of 34
            Pseudo Genes (internal stop)      :: 1 of 34
            Pseudo Genes (multiple problems)  :: 3 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242411
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="DOME_MAG_5775"
                     /isolation_source="stool"
                     /host="Bos taurus"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="USA: Marshfield, WI"
                     /lat_lon="44.69 N 90.17 W"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAXJXF010000001-JAXJXF010000167
WGS_SCAFLD  NZ_JAXJXF010000001-NZ_JAXJXF010000167
//
LOCUS       NZ_JAUSOV010000000   2224172 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanocalculus sp. isolate E21_maxbin.092, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAUSOV000000000
VERSION     NZ_JAUSOV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36304447
            Assembly: GCF_030655975.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocalculus sp. (groundwater metagenome)
  ORGANISM  Methanocalculus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 2224172)
  AUTHORS   Diao,M., Li,S., Humez,P., Mosier,D., Kouris,A., Mayer,B. and
            Strous,M.
  TITLE     Cryptic and ubiquitous nitrogen cycling microorganisms in Alberta
            groundwater
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2224172)
  AUTHORS   Diao,M., Li,S., Humez,P., Mosier,D., Kouris,A., Mayer,B. and
            Strous,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2023) Department of Geoscience, University of
            Calgary, 2500 University Drive, Calgary T2N 1N4, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUSOV000000000.1.
            The Methanocalculus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAUSOV000000000.  This version of the project
            (01) has the accession number NZ_JAUSOV010000000, and consists of
            sequences JAUSOV010000001-JAUSOV010000214.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: DAS Tool v. 1.1.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 138.6x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030655975.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:13:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,383
            CDSs (total)                      :: 2,327
            Genes (coding)                    :: 2,292
            CDSs (with protein)               :: 2,292
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 2 of 35
            Pseudo Genes (incomplete)         :: 32 of 35
            Pseudo Genes (internal stop)      :: 1 of 35
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2224172
                     /organism="Methanocalculus sp."
                     /mol_type="genomic DNA"
                     /isolate="E21_maxbin.092"
                     /isolation_source="groundwater"
                     /db_xref="taxon:2004547"
                     /environmental_sample
                     /geo_loc_name="Canada: Alberta"
                     /lat_lon="57.24 N 111.45 W"
                     /collection_date="2019-10-03"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JAUSOV010000001-JAUSOV010000214
WGS_SCAFLD  NZ_JAUSOV010000001-NZ_JAUSOV010000214
//
LOCUS       NZ_JASKJQ010000000   1634087 bp    DNA     linear   ENV 03-MAY-2024
DEFINITION  MAG: Methanothermococcus sp. isolate DJKA129_NP-J24_bin.16, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JASKJQ000000000
VERSION     NZ_JASKJQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33401155
            Assembly: GCF_030153405.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothermococcus sp. (subsurface metagenome)
  ORGANISM  Methanothermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae;
            Methanothermococcus.
REFERENCE   1  (bases 1 to 1634087)
  AUTHORS   Amundson,K. and Wilkins,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2023) Soil and Crop Sciences, Colorado State
            University, 1170 Campus Delivery, Fort Collins, CO 80523, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASKJQ000000000.1.
            The Methanothermococcus sp. whole genome shotgun (WGS) project has
            the project accession NZ_JASKJQ000000000.  This version of the
            project (01) has the accession number NZ_JASKJQ010000000, and
            consists of sequences JASKJQ010000001-JASKJQ010000050.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: idba-ud v. 1.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 12.68400997x
            Sequencing Technology  :: Illumnina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030153405.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:19:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,661
            CDSs (total)                      :: 1,626
            Genes (coding)                    :: 1,608
            CDSs (with protein)               :: 1,608
            Genes (RNA)                       :: 35
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 4 of 18
            Pseudo Genes (incomplete)         :: 11 of 18
            Pseudo Genes (internal stop)      :: 4 of 18
            Pseudo Genes (multiple problems)  :: 1 of 18
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634087
                     /organism="Methanothermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DJKA129_NP-J24_bin.16"
                     /isolation_source="Produced fluids from hydraulically
                     fractured shales"
                     /db_xref="taxon:2614238"
                     /environmental_sample
                     /geo_loc_name="USA: Colorado"
                     /lat_lon="40.411582 N 104.348363 W"
                     /collection_date="2020"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JASKJQ010000001-JASKJQ010000050
WGS_SCAFLD  NZ_JASKJQ010000001-NZ_JASKJQ010000050
//
LOCUS       NZ_JAMYJW010000000   4860127 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Haladaptatus sp. AB643, whole genome shotgun sequencing project.
ACCESSION   NZ_JAMYJW000000000
VERSION     NZ_JAMYJW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27512719
            Assembly: GCF_024136975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. AB643
  ORGANISM  Haladaptatus sp. AB643
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 4860127)
  AUTHORS   Mukherji,S., Bakshi,U. and Ghosh,A.
  TITLE     Draft genome sequences of hydrocarbon degrading Haloferax sp.
            AB510, Haladaptatus sp. AB618 and Haladaptatus sp. AB643 isolated
            from the estuarine sediments of Sundarban mangrove forests, India
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4860127)
  AUTHORS   Mukherji,S., Bakshi,U. and Ghosh,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2022) Biochemistry, Bose Institute, EN 80, Sector
            V, Bidhan Nagar, Kolkata, West Bengal 700091, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMYJW000000000.1.
            The Haladaptatus sp. AB643 whole genome shotgun (WGS) project has
            the project accession NZ_JAMYJW000000000.  This version of the
            project (01) has the accession number NZ_JAMYJW010000000, and
            consists of sequences JAMYJW010000001-JAMYJW010000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-AUG-2019
            Assembly Method        :: SPAdes v. 3.6
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024136975.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:10:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,835
            CDSs (total)                      :: 4,776
            Genes (coding)                    :: 4,737
            CDSs (with protein)               :: 4,737
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 5 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 17 of 39
            Pseudo Genes (incomplete)         :: 23 of 39
            Pseudo Genes (internal stop)      :: 1 of 39
            Pseudo Genes (multiple problems)  :: 2 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4860127
                     /organism="Haladaptatus sp. AB643"
                     /mol_type="genomic DNA"
                     /strain="AB643"
                     /isolation_source="estuarine mud [ENVO:00002160]"
                     /db_xref="taxon:2934174"
                     /geo_loc_name="India:West Bengal, Sundarban mangrove
                     forests"
                     /lat_lon="22.10904722 N 88.77283889 E"
                     /collection_date="2017-01"
WGS         JAMYJW010000001-JAMYJW010000051
WGS_SCAFLD  NZ_JAMYJW010000001-NZ_JAMYJW010000051
//
LOCUS       NZ_JAMYJY010000000   3966364 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Haloferax sp. AB510, whole genome shotgun sequencing project.
ACCESSION   NZ_JAMYJY000000000
VERSION     NZ_JAMYJY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27512717
            Assembly: GCF_024136985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. AB510
  ORGANISM  Haloferax sp. AB510
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3966364)
  AUTHORS   Mukherji,S., Bakshi,U. and Ghosh,A.
  TITLE     Draft genome sequences of hydrocarbon degrading Haloferax sp.
            AB510, Haladaptatus sp. AB618 and Haladaptatus sp. AB643 isolated
            from the estuarine sediments of Sundarban mangrove forests, India
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3966364)
  AUTHORS   Mukherji,S., Bakshi,U. and Ghosh,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2022) Biochemistry, Bose Institute, EN 80, Sector
            V, Bidhan Nagar, Kolkata, West Bengal 700091, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMYJY000000000.1.
            The Haloferax sp. AB510 whole genome shotgun (WGS) project has the
            project accession NZ_JAMYJY000000000.  This version of the project
            (01) has the accession number NZ_JAMYJY010000000, and consists of
            sequences JAMYJY010000001-JAMYJY010000264.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-AUG-2019
            Assembly Method        :: SPAdes v. 3.6
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024136985.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:08:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,186
            CDSs (total)                      :: 4,130
            Genes (coding)                    :: 3,789
            CDSs (with protein)               :: 3,789
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 341
            CDSs (without protein)            :: 341
            Pseudo Genes (ambiguous residues) :: 0 of 341
            Pseudo Genes (frameshifted)       :: 162 of 341
            Pseudo Genes (incomplete)         :: 200 of 341
            Pseudo Genes (internal stop)      :: 11 of 341
            Pseudo Genes (multiple problems)  :: 29 of 341
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966364
                     /organism="Haloferax sp. AB510"
                     /mol_type="genomic DNA"
                     /strain="AB510"
                     /isolation_source="estuarine mud [ENVO:00002160]"
                     /db_xref="taxon:2934172"
                     /geo_loc_name="India:West Bengal, Sundarban mangrove
                     forests"
                     /lat_lon="22.10904722 N 88.77283889 E"
                     /collection_date="2017-01"
WGS         JAMYJY010000001-JAMYJY010000264
WGS_SCAFLD  NZ_JAMYJY010000001-NZ_JAMYJY010000264
//
LOCUS       NZ_JAQJDA010000000   4220465 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Halococcus sp. PRR34, whole genome shotgun sequencing project.
ACCESSION   NZ_JAQJDA000000000
VERSION     NZ_JAQJDA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32742768
            Assembly: GCF_028617175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus sp. PRR34
  ORGANISM  Halococcus sp. PRR34
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 4220465)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a salted mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4220465)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) College of Life Sciences, Anhui Normal
            University, Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQJDA000000000.1.
            The Halococcus sp. PRR34 whole genome shotgun (WGS) project has the
            project accession NZ_JAQJDA000000000.  This version of the project
            (01) has the accession number NZ_JAQJDA010000000, and consists of
            sequences JAQJDA010000001-JAQJDA010000086.
            Bacteria and source DNA available from salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028617175.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:15:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,173
            CDSs (total)                      :: 4,114
            Genes (coding)                    :: 3,996
            CDSs (with protein)               :: 3,996
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 34 of 118
            Pseudo Genes (incomplete)         :: 98 of 118
            Pseudo Genes (internal stop)      :: 19 of 118
            Pseudo Genes (multiple problems)  :: 26 of 118
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4220465
                     /organism="Halococcus sp. PRR34"
                     /mol_type="genomic DNA"
                     /strain="PRR34"
                     /isolation_source="salt mine"
                     /db_xref="taxon:3020830"
                     /geo_loc_name="China: Yunnan"
                     /collection_date="2020-09-10"
                     /collected_by="Shaoxing Chen"
WGS         JAQJDA010000001-JAQJDA010000086
WGS_SCAFLD  NZ_JAQJDA010000001-NZ_JAQJDA010000086
//
LOCUS       NZ_JAXHGM010000000   4152706 bp    DNA     linear   BCT 03-MAY-2024
DEFINITION  Halorubellus sp. PRR65, whole genome shotgun sequencing project.
ACCESSION   NZ_JAXHGM000000000
VERSION     NZ_JAXHGM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38415158
            Assembly: GCF_034808145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubellus sp. PRR65
  ORGANISM  Halorubellus sp. PRR65
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Halorubellus.
REFERENCE   1  (bases 1 to 4152706)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a salted mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4152706)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2023) College of Life Sciences, Anhui Normal
            University, Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXHGM000000000.1.
            The Halorubellus sp. PRR65 whole genome shotgun (WGS) project has
            the project accession NZ_JAXHGM000000000.  This version of the
            project (01) has the accession number NZ_JAXHGM010000000, and
            consists of sequences JAXHGM010000001-JAXHGM010000129.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034808145.1-RS_2024_05_03
            Annotation Date                   :: 05/03/2024 12:14:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,086
            CDSs (total)                      :: 4,028
            Genes (coding)                    :: 3,976
            CDSs (with protein)               :: 3,976
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 4 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 14 of 52
            Pseudo Genes (incomplete)         :: 41 of 52
            Pseudo Genes (internal stop)      :: 9 of 52
            Pseudo Genes (multiple problems)  :: 10 of 52
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4152706
                     /organism="Halorubellus sp. PRR65"
                     /mol_type="genomic DNA"
                     /strain="PRR65"
                     /isolation_source="salt mine"
                     /db_xref="taxon:3098148"
                     /geo_loc_name="China: Anhui"
                     /collection_date="2021-08-10"
                     /collected_by="Shaoxing Chen"
WGS         JAXHGM010000001-JAXHGM010000129
WGS_SCAFLD  NZ_JAXHGM010000001-NZ_JAXHGM010000129
//
LOCUS       NZ_WUBV01000000      4162025 bp    DNA     linear   BCT 06-MAY-2024
DEFINITION  Natrialba sp. INN-245, whole genome shotgun sequencing project.
ACCESSION   NZ_WUBV00000000
VERSION     NZ_WUBV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13632399
            Assembly: GCF_009807105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba sp. INN-245
  ORGANISM  Natrialba sp. INN-245
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4162025)
  AUTHORS   Xue,Q.
  TITLE     Natrialba sp. INN-245 isolated from Inner Mongolia Autonomous
            Region of China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4162025)
  AUTHORS   Xue,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2019) The Institute of Microbiology, Chinese
            Academy of Science, Beichen Xilu, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WUBV00000000.1.
            The Natrialba sp. INN-245 whole genome shotgun (WGS) project has
            the project accession NZ_WUBV00000000.  This version of the project
            (01) has the accession number NZ_WUBV01000000, and consists of
            sequences WUBV01000001-WUBV01000065.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 329.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009807105.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 05:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,088
            CDSs (total)                      :: 4,036
            Genes (coding)                    :: 3,885
            CDSs (with protein)               :: 3,885
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 54 of 151
            Pseudo Genes (incomplete)         :: 118 of 151
            Pseudo Genes (internal stop)      :: 23 of 151
            Pseudo Genes (multiple problems)  :: 40 of 151
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4162025
                     /organism="Natrialba sp. INN-245"
                     /mol_type="genomic DNA"
                     /strain="INN-245"
                     /isolation_source="salt pond"
                     /db_xref="taxon:2690967"
                     /geo_loc_name="China: Inner Mongolia"
                     /collection_date="2016-09-27"
WGS         WUBV01000001-WUBV01000065
WGS_SCAFLD  NZ_WUBV01000001-NZ_WUBV01000065
//
LOCUS       NZ_JAVKGM010000000   3347244 bp    DNA     linear   BCT 07-MAY-2024
DEFINITION  Halalkaliarchaeum sp. AArc-GB, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAVKGM000000000
VERSION     NZ_JAVKGM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37283476
            Assembly: GCF_031432225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkaliarchaeum sp. AArc-GB
  ORGANISM  Halalkaliarchaeum sp. AArc-GB
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halalkaliarchaeum.
REFERENCE   1  (bases 1 to 3347244)
  AUTHORS   Sorokin,D.Y., Abbas,B. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3347244)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVKGM000000000.1.
            The Halalkaliarchaeum sp. AArc-GB whole genome shotgun (WGS)
            project has the project accession NZ_JAVKGM000000000.  This version
            of the project (01) has the accession number NZ_JAVKGM010000000,
            and consists of sequences JAVKGM010000001-JAVKGM010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 400x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031432225.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 16:52:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,352
            CDSs (total)                      :: 3,288
            Genes (coding)                    :: 3,232
            CDSs (with protein)               :: 3,232
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 10 of 56
            Pseudo Genes (incomplete)         :: 50 of 56
            Pseudo Genes (internal stop)      :: 5 of 56
            Pseudo Genes (multiple problems)  :: 7 of 56
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347244
                     /organism="Halalkaliarchaeum sp. AArc-GB"
                     /mol_type="genomic DNA"
                     /strain="AArc-GB"
                     /isolation_source="sediments from hypersaline soda lakes"
                     /db_xref="taxon:3074078"
                     /geo_loc_name="Russia: Altai region, Kulunda Steppe"
                     /collection_date="2018-08-08"
WGS         JAVKGM010000001-JAVKGM010000041
WGS_SCAFLD  NZ_JAVKGM010000001-NZ_JAVKGM010000041
//
LOCUS       NZ_JAEPET010000000   3301211 bp    DNA     linear   BCT 08-MAY-2024
DEFINITION  Halorubrum sp. LN27, whole genome shotgun sequencing project.
ACCESSION   NZ_JAEPET000000000
VERSION     NZ_JAEPET000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17213440
            Assembly: GCF_016635065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. LN27
  ORGANISM  Halorubrum sp. LN27
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3301211)
  AUTHORS   Chen,S.
  TITLE     A new virus-host system in halophilic archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3301211)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2021) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEPET000000000.1.
            The Halorubrum sp. LN27 whole genome shotgun (WGS) project has the
            project accession NZ_JAEPET000000000.  This version of the project
            (01) has the accession number NZ_JAEPET010000000, and consists of
            sequences JAEPET010000001-JAEPET010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016635065.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 10:43:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,277
            CDSs (total)                      :: 3,219
            Genes (coding)                    :: 3,196
            CDSs (with protein)               :: 3,196
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 9 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 0 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301211
                     /organism="Halorubrum sp. LN27"
                     /mol_type="genomic DNA"
                     /strain="LN27"
                     /isolation_source="salt mine"
                     /db_xref="taxon:2801032"
                     /geo_loc_name="China"
                     /collection_date="2016-09-24"
                     /collected_by="Shaoxing Chen"
                     /identified_by="Shaoxing Chen"
WGS         JAEPET010000001-JAEPET010000002
WGS_SCAFLD  NZ_JAEPET010000001-NZ_JAEPET010000002
//
LOCUS       NZ_JARANU010000000   2670493 bp    DNA     linear   BCT 08-MAY-2024
DEFINITION  Halopenitus sp. POP-27, whole genome shotgun sequencing project.
ACCESSION   NZ_JARANU000000000
VERSION     NZ_JARANU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31677957
            Assembly: GCF_029889855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopenitus sp. POP-27
  ORGANISM  Halopenitus sp. POP-27
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halopenitus.
REFERENCE   1  (bases 1 to 2670493)
  AUTHORS   Lach,J., Strapagiel,D., Matera-Witkiewicz,A. and Staczek,P.
  TITLE     Draft genomes of halophilic Archaea strains isolated from brines of
            the Carpathian Foreland, Poland
  JOURNAL   J Genomics 11, 20-25 (2023)
   PUBMED   37066119
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2670493)
  AUTHORS   Lach,J., Strapagiel,D. and Staczek,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2023) Biobank Lab, University of Lodz, Pomorska
            139, Lodz, Lodzkie 90-235, Poland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARANU000000000.1.
            The Halopenitus sp. POP-27 whole genome shotgun (WGS) project has
            the project accession NZ_JARANU000000000.  This version of the
            project (01) has the accession number NZ_JARANU010000000, and
            consists of sequences JARANU010000001-JARANU010000033.
            Bacteria and source DNA available from Department of Molecular
            Microbiology, Faculty of Biology and Environmental Protection,
            University of Lodz, Lodz, Poland.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029889855.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 16:14:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,681
            CDSs (total)                      :: 2,634
            Genes (coding)                    :: 2,576
            CDSs (with protein)               :: 2,576
            Genes (RNA)                       :: 47
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 8 of 58
            Pseudo Genes (incomplete)         :: 51 of 58
            Pseudo Genes (internal stop)      :: 6 of 58
            Pseudo Genes (multiple problems)  :: 7 of 58
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2670493
                     /organism="Halopenitus sp. POP-27"
                     /mol_type="genomic DNA"
                     /strain="POP-27"
                     /isolation_source="Brine from the Bochnia Salt Mine"
                     /db_xref="taxon:2994425"
                     /geo_loc_name="Poland: Lesser Poland, Bochnia"
                     /collection_date="2016"
WGS         JARANU010000001-JARANU010000033
WGS_SCAFLD  NZ_JARANU010000001-NZ_JARANU010000033
//
LOCUS       NZ_JAVDDW010000000   3570501 bp    DNA     linear   BCT 08-MAY-2024
DEFINITION  Halobellus sp. H-GB7, whole genome shotgun sequencing project.
ACCESSION   NZ_JAVDDW000000000
VERSION     NZ_JAVDDW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36994297
            Assembly: GCF_030848585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus sp. H-GB7
  ORGANISM  Halobellus sp. H-GB7
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3570501)
  AUTHORS   Sorokin,D.Y., Abbas,B. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3570501)
  AUTHORS   Sorokin,D.Y., Abbas,B. and Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVDDW000000000.1.
            The Halobellus sp. H-GB7 whole genome shotgun (WGS) project has the
            project accession NZ_JAVDDW000000000.  This version of the project
            (01) has the accession number NZ_JAVDDW010000000, and consists of
            sequences JAVDDW010000001-JAVDDW010000035.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 900x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030848585.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 16:43:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,560
            CDSs (total)                      :: 3,507
            Genes (coding)                    :: 3,464
            CDSs (with protein)               :: 3,464
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 13 of 43
            Pseudo Genes (incomplete)         :: 34 of 43
            Pseudo Genes (internal stop)      :: 3 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570501
                     /organism="Halobellus sp. H-GB7"
                     /mol_type="genomic DNA"
                     /strain="H-GB7"
                     /isolation_source="aerobic sediments from hypersaline salt
                     lake"
                     /db_xref="taxon:3069756"
                     /geo_loc_name="Russia: Altai region, Kulunda Steppe"
                     /collection_date="2018-08-08"
WGS         JAVDDW010000001-JAVDDW010000035
WGS_SCAFLD  NZ_JAVDDW010000001-NZ_JAVDDW010000035
//
LOCUS       NZ_CAKZRO010000000   2695616 bp    DNA     linear   ENV 08-MAY-2024
DEFINITION  MAG: uncultured Halorubrum sp. isolate
            ERR2683635_bin.44_CONCOCT_v1.1_MAG, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAKZRO000000000
VERSION     NZ_CAKZRO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13959178
            Sequence Read Archive: ERR2683635
            Assembly: GCF_937146585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Halorubrum sp. (aquatic metagenome)
  ORGANISM  uncultured Halorubrum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            environmental samples.
REFERENCE   1  (bases 1 to 2695616)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKZRO000000000.1.
            The uncultured Halorubrum sp. whole genome shotgun (WGS) project
            has the project accession NZ_CAKZRO000000000.  This version of the
            project (01) has the accession number NZ_CAKZRO010000000, and
            consists of sequences CAKZRO010000001-CAKZRO010000173.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135664.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run ERR2683635.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937146585.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 15:26:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,864
            CDSs (total)                      :: 2,822
            Genes (coding)                    :: 2,752
            CDSs (with protein)               :: 2,752
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 7 of 70
            Pseudo Genes (incomplete)         :: 67 of 70
            Pseudo Genes (internal stop)      :: 0 of 70
            Pseudo Genes (multiple problems)  :: 4 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2695616
                     /organism="uncultured Halorubrum sp."
                     /mol_type="genomic DNA"
                     /isolate="ERR2683635_bin.44_CONCOCT_v1.1_MAG"
                     /isolation_source="aquatic metagenome"
                     /db_xref="taxon:399555"
                     /environmental_sample
                     /metagenome_source="aquatic metagenome"
                     /metagenomic
WGS         CAKZRO010000001-CAKZRO010000173
WGS_SCAFLD  NZ_CAKZRO010000001-NZ_CAKZRO010000173
//
LOCUS       NZ_JARUKV010000000   4877762 bp    DNA     linear   BCT 08-MAY-2024
DEFINITION  Natronococcus sp. A-GB7, whole genome shotgun sequencing project.
ACCESSION   NZ_JARUKV000000000
VERSION     NZ_JARUKV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33954832
            Assembly: GCF_029688865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronococcus sp. A-GB7
  ORGANISM  Natronococcus sp. A-GB7
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 4877762)
  AUTHORS   Sorokin,D.Y. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4877762)
  AUTHORS   Sorokin,D.Y. and Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) Department of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUKV000000000.1.
            The Natronococcus sp. A-GB7 whole genome shotgun (WGS) project has
            the project accession NZ_JARUKV000000000.  This version of the
            project (01) has the accession number NZ_JARUKV010000000, and
            consists of sequences JARUKV010000001-JARUKV010000077.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 770x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029688865.1-RS_2024_05_06
            Annotation Date                   :: 05/06/2024 16:23:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,927
            CDSs (total)                      :: 4,872
            Genes (coding)                    :: 4,764
            CDSs (with protein)               :: 4,764
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 44 of 108
            Pseudo Genes (incomplete)         :: 81 of 108
            Pseudo Genes (internal stop)      :: 24 of 108
            Pseudo Genes (multiple problems)  :: 32 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4877762
                     /organism="Natronococcus sp. A-GB7"
                     /mol_type="genomic DNA"
                     /strain="A-GB7"
                     /isolation_source="anaerobic sediment from hypersaline
                     soda lake"
                     /db_xref="taxon:3037649"
                     /geo_loc_name="Russia: Altai region, Kulunda Steppe"
                     /collection_date="2021-07"
WGS         JARUKV010000001-JARUKV010000077
WGS_SCAFLD  NZ_JARUKV010000001-NZ_JARUKV010000077
//
LOCUS       NZ_WQSY01000000      1808297 bp    DNA     linear   ENV 09-MAY-2024
DEFINITION  MAG: Candidatus Bathycorpusculum sp. isolate Co191P3bin4, whole
            genome shotgun sequencing project.
ACCESSION   NZ_WQSY00000000
VERSION     NZ_WQSY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12581657
            Assembly: GCF_009787585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Bathycorpusculum sp. (termite gut metagenome)
  ORGANISM  Candidatus Bathycorpusculum sp.
            Archaea; Candidatus Bathyarchaeota; Candidatus Bathyarchaeia;
            Candidatus Bathyarchaeales; Candidatus Bathycorpusculaceae;
            Candidatus Bathycorpusculum.
REFERENCE   1  (bases 1 to 1808297)
  AUTHORS   Herve,V., Liu,P., Dietrich,C., Sillam-Dusses,D., Stiblik,P.,
            Sobotnik,J. and Brune,A.
  TITLE     Phylogenomic analysis of 589 metagenome-assembled genomes
            encompassing all major prokaryotic lineages from the gut of higher
            termites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1808297)
  AUTHORS   Herve,V. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2019) RG Insect Gut Microbiology and Symbiosis,
            Max Planck Institute for Terrestrial Microbiology,
            Karl-von-Frisch-Strasse 10, Marburg, Hessen 35043, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WQSY00000000.1.
            The Candidatus Bathycorpusculum sp. whole genome shotgun (WGS)
            project has the project accession NZ_WQSY00000000.  This version of
            the project (01) has the accession number NZ_WQSY01000000, and
            consists of sequences WQSY01000001-WQSY01000159.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2017
            Assembly Method        :: IDBA-UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 115x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009787585.1-RS_2024_05_09
            Annotation Date                   :: 05/09/2024 18:30:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,709
            CDSs (total)                      :: 1,667
            Genes (coding)                    :: 1,625
            CDSs (with protein)               :: 1,625
            Genes (RNA)                       :: 42
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 11 of 42
            Pseudo Genes (incomplete)         :: 38 of 42
            Pseudo Genes (internal stop)      :: 4 of 42
            Pseudo Genes (multiple problems)  :: 10 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808297
                     /organism="Candidatus Bathycorpusculum sp."
                     /mol_type="genomic DNA"
                     /isolate="Co191P3bin4"
                     /isolation_source="P3 gut compartment"
                     /host="Cornitermes sp."
                     /db_xref="taxon:2994959"
                     /environmental_sample
                     /geo_loc_name="French Guiana: Petit-Saut"
                     /lat_lon="5.3453 N 53.2463 W"
                     /collection_date="2013-08-12"
                     /metagenome_source="termite gut metagenome"
                     /metagenomic
WGS         WQSY01000001-WQSY01000159
WGS_SCAFLD  NZ_WQSY01000001-NZ_WQSY01000159
//
LOCUS       NZ_WQWQ01000000      2080780 bp    DNA     linear   ENV 09-MAY-2024
DEFINITION  MAG: Candidatus Bathycorpusculum sp. isolate Emb289P3bin109, whole
            genome shotgun sequencing project.
ACCESSION   NZ_WQWQ00000000
VERSION     NZ_WQWQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12581753
            Assembly: GCF_009785285.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Bathycorpusculum sp. (termite gut metagenome)
  ORGANISM  Candidatus Bathycorpusculum sp.
            Archaea; Candidatus Bathyarchaeota; Candidatus Bathyarchaeia;
            Candidatus Bathyarchaeales; Candidatus Bathycorpusculaceae;
            Candidatus Bathycorpusculum.
REFERENCE   1  (bases 1 to 2080780)
  AUTHORS   Herve,V., Liu,P., Dietrich,C., Sillam-Dusses,D., Stiblik,P.,
            Sobotnik,J. and Brune,A.
  TITLE     Phylogenomic analysis of 589 metagenome-assembled genomes
            encompassing all major prokaryotic lineages from the gut of higher
            termites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2080780)
  AUTHORS   Herve,V. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2019) RG Insect Gut Microbiology and Symbiosis,
            Max Planck Institute for Terrestrial Microbiology,
            Karl-von-Frisch-Strasse 10, Marburg, Hessen 35043, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WQWQ00000000.1.
            The Candidatus Bathycorpusculum sp. whole genome shotgun (WGS)
            project has the project accession NZ_WQWQ00000000.  This version of
            the project (01) has the accession number NZ_WQWQ01000000, and
            consists of sequences WQWQ01000001-WQWQ01000121.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2017
            Assembly Method        :: IDBA-UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 58x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009785285.1-RS_2024_05_09
            Annotation Date                   :: 05/09/2024 18:44:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,035
            CDSs (total)                      :: 1,988
            Genes (coding)                    :: 1,948
            CDSs (with protein)               :: 1,948
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 2 of 40
            Pseudo Genes (incomplete)         :: 39 of 40
            Pseudo Genes (internal stop)      :: 0 of 40
            Pseudo Genes (multiple problems)  :: 1 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080780
                     /organism="Candidatus Bathycorpusculum sp."
                     /mol_type="genomic DNA"
                     /isolate="Emb289P3bin109"
                     /isolation_source="P3 gut compartment"
                     /host="Embiratermes neotenicus"
                     /db_xref="taxon:2994959"
                     /environmental_sample
                     /geo_loc_name="French Guiana: Petit-Saut"
                     /lat_lon="5.3454 N 53.2463 W"
                     /collection_date="2016-02-01"
                     /metagenome_source="termite gut metagenome"
                     /metagenomic
WGS         WQWQ01000001-WQWQ01000121
WGS_SCAFLD  NZ_WQWQ01000001-NZ_WQWQ01000121
//
LOCUS       NZ_WRFL01000000      2504117 bp    DNA     linear   ENV 09-MAY-2024
DEFINITION  MAG: Candidatus Bathycorpusculum sp. isolate Lab288P4bin61, whole
            genome shotgun sequencing project.
ACCESSION   NZ_WRFL00000000
VERSION     NZ_WRFL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12581982
            Assembly: GCF_009778815.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Bathycorpusculum sp. (termite gut metagenome)
  ORGANISM  Candidatus Bathycorpusculum sp.
            Archaea; Candidatus Bathyarchaeota; Candidatus Bathyarchaeia;
            Candidatus Bathyarchaeales; Candidatus Bathycorpusculaceae;
            Candidatus Bathycorpusculum.
REFERENCE   1  (bases 1 to 2504117)
  AUTHORS   Herve,V., Liu,P., Dietrich,C., Sillam-Dusses,D., Stiblik,P.,
            Sobotnik,J. and Brune,A.
  TITLE     Phylogenomic analysis of 589 metagenome-assembled genomes
            encompassing all major prokaryotic lineages from the gut of higher
            termites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2504117)
  AUTHORS   Herve,V. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2019) RG Insect Gut Microbiology and Symbiosis,
            Max Planck Institute for Terrestrial Microbiology,
            Karl-von-Frisch-Strasse 10, Marburg, Hessen 35043, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WRFL00000000.1.
            The Candidatus Bathycorpusculum sp. whole genome shotgun (WGS)
            project has the project accession NZ_WRFL00000000.  This version of
            the project (01) has the accession number NZ_WRFL01000000, and
            consists of sequences WRFL01000001-WRFL01000128.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2017
            Assembly Method        :: IDBA-UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 110x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009778815.1-RS_2024_05_09
            Annotation Date                   :: 05/09/2024 18:52:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,467
            CDSs (total)                      :: 2,414
            Genes (coding)                    :: 2,368
            CDSs (with protein)               :: 2,368
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 5 of 46
            Pseudo Genes (incomplete)         :: 42 of 46
            Pseudo Genes (internal stop)      :: 3 of 46
            Pseudo Genes (multiple problems)  :: 4 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504117
                     /organism="Candidatus Bathycorpusculum sp."
                     /mol_type="genomic DNA"
                     /isolate="Lab288P4bin61"
                     /isolation_source="P4 gut compartment"
                     /host="Labiotermes labralis"
                     /db_xref="taxon:2994959"
                     /environmental_sample
                     /geo_loc_name="French Guiana: Petit-Saut"
                     /lat_lon="5.3454 N 53.2462 W"
                     /collection_date="2016-01-31"
                     /metagenome_source="termite gut metagenome"
                     /metagenomic
WGS         WRFL01000001-WRFL01000128
WGS_SCAFLD  NZ_WRFL01000001-NZ_WRFL01000128
//
LOCUS       NZ_WQRU01000000      1762101 bp    DNA     linear   ENV 12-MAY-2024
DEFINITION  MAG: Candidatus Bathycorpusculum sp. isolate Co191P1bin46, whole
            genome shotgun sequencing project.
ACCESSION   NZ_WQRU00000000
VERSION     NZ_WQRU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12581627
            Assembly: GCF_009786585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Bathycorpusculum sp. (termite gut metagenome)
  ORGANISM  Candidatus Bathycorpusculum sp.
            Archaea; Candidatus Bathyarchaeota; Candidatus Bathyarchaeia;
            Candidatus Bathyarchaeales; Candidatus Bathycorpusculaceae;
            Candidatus Bathycorpusculum.
REFERENCE   1  (bases 1 to 1762101)
  AUTHORS   Herve,V., Liu,P., Dietrich,C., Sillam-Dusses,D., Stiblik,P.,
            Sobotnik,J. and Brune,A.
  TITLE     Phylogenomic analysis of 589 metagenome-assembled genomes
            encompassing all major prokaryotic lineages from the gut of higher
            termites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1762101)
  AUTHORS   Herve,V. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2019) RG Insect Gut Microbiology and Symbiosis,
            Max Planck Institute for Terrestrial Microbiology,
            Karl-von-Frisch-Strasse 10, Marburg, Hessen 35043, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WQRU00000000.1.
            The Candidatus Bathycorpusculum sp. whole genome shotgun (WGS)
            project has the project accession NZ_WQRU00000000.  This version of
            the project (01) has the accession number NZ_WQRU01000000, and
            consists of sequences WQRU01000001-WQRU01000230.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2017
            Assembly Method        :: IDBA-UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 27x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009786585.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 11:01:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,732
            CDSs (total)                      :: 1,690
            Genes (coding)                    :: 1,620
            CDSs (with protein)               :: 1,620
            Genes (RNA)                       :: 42
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 8 of 70
            Pseudo Genes (incomplete)         :: 67 of 70
            Pseudo Genes (internal stop)      :: 4 of 70
            Pseudo Genes (multiple problems)  :: 8 of 70
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762101
                     /organism="Candidatus Bathycorpusculum sp."
                     /mol_type="genomic DNA"
                     /isolate="Co191P1bin46"
                     /isolation_source="P1 gut compartment"
                     /host="Cornitermes sp."
                     /db_xref="taxon:2994959"
                     /environmental_sample
                     /geo_loc_name="French Guiana: Petit-Saut"
                     /lat_lon="5.3453 N 53.2463 W"
                     /collection_date="2013-08-12"
                     /metagenome_source="termite gut metagenome"
                     /metagenomic
WGS         WQRU01000001-WQRU01000230
WGS_SCAFLD  NZ_WQRU01000001-NZ_WQRU01000230
//
LOCUS       NZ_JARANT010000000   2763128 bp    DNA     linear   BCT 12-MAY-2024
DEFINITION  Halorubrum sp. Boch-26, whole genome shotgun sequencing project.
ACCESSION   NZ_JARANT000000000
VERSION     NZ_JARANT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31677964
            Assembly: GCF_029889805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Boch-26
  ORGANISM  Halorubrum sp. Boch-26
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 2763128)
  AUTHORS   Lach,J., Strapagiel,D., Matera-Witkiewicz,A. and Staczek,P.
  TITLE     Draft genomes of halophilic Archaea strains isolated from brines of
            the Carpathian Foreland, Poland
  JOURNAL   J Genomics 11, 20-25 (2023)
   PUBMED   37066119
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2763128)
  AUTHORS   Lach,J., Strapagiel,D. and Staczek,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2023) Biobank Lab, University of Lodz, Pomorska
            139, Lodz, Lodzkie 90-235, Poland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARANT000000000.1.
            The Halorubrum sp. Boch-26 whole genome shotgun (WGS) project has
            the project accession NZ_JARANT000000000.  This version of the
            project (01) has the accession number NZ_JARANT010000000, and
            consists of sequences JARANT010000001-JARANT010000177.
            Bacteria and source DNA available from Department of Molecular
            Microbiology, Faculty of Biology and Environmental Protection,
            University of Lodz, Lodz, Poland.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029889805.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 17:34:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,908
            CDSs (total)                      :: 2,863
            Genes (coding)                    :: 2,744
            CDSs (with protein)               :: 2,744
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 12 of 119
            Pseudo Genes (incomplete)         :: 109 of 119
            Pseudo Genes (internal stop)      :: 5 of 119
            Pseudo Genes (multiple problems)  :: 6 of 119
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763128
                     /organism="Halorubrum sp. Boch-26"
                     /mol_type="genomic DNA"
                     /strain="Boch-26"
                     /isolation_source="Brine from the Bochnia Salt Mine"
                     /db_xref="taxon:2994426"
                     /geo_loc_name="Poland:Lesser Poland, Bochnia"
                     /collection_date="2016"
WGS         JARANT010000001-JARANT010000177
WGS_SCAFLD  NZ_JARANT010000001-NZ_JARANT010000177
//
LOCUS       NZ_JARUKW010000000   4504882 bp    DNA     linear   BCT 12-MAY-2024
DEFINITION  Natronococcus sp. A-GB1, whole genome shotgun sequencing project.
ACCESSION   NZ_JARUKW000000000
VERSION     NZ_JARUKW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33954830
            Assembly: GCF_029688845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronococcus sp. A-GB1
  ORGANISM  Natronococcus sp. A-GB1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 4504882)
  AUTHORS   Sorokin,D.Y. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4504882)
  AUTHORS   Sorokin,D.Y. and Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) Department of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUKW000000000.1.
            The Natronococcus sp. A-GB1 whole genome shotgun (WGS) project has
            the project accession NZ_JARUKW000000000.  This version of the
            project (01) has the accession number NZ_JARUKW010000000, and
            consists of sequences JARUKW010000001-JARUKW010000057.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 385x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029688845.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 17:28:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,557
            CDSs (total)                      :: 4,500
            Genes (coding)                    :: 4,383
            CDSs (with protein)               :: 4,383
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 43 of 117
            Pseudo Genes (incomplete)         :: 84 of 117
            Pseudo Genes (internal stop)      :: 27 of 117
            Pseudo Genes (multiple problems)  :: 34 of 117
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4504882
                     /organism="Natronococcus sp. A-GB1"
                     /mol_type="genomic DNA"
                     /strain="A-GB1"
                     /isolation_source="anaerobic sediment from hypersaline
                     soda lake"
                     /db_xref="taxon:3037648"
                     /geo_loc_name="Russia: Altai region, Kulunda Steppe"
                     /collection_date="2021-07"
WGS         JARUKW010000001-JARUKW010000057
WGS_SCAFLD  NZ_JARUKW010000001-NZ_JARUKW010000057
//
LOCUS       NZ_JASJOC010000000   4679536 bp    DNA     linear   BCT 12-MAY-2024
DEFINITION  Halostagnicola sp. A-GB9-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JASJOC000000000
VERSION     NZ_JASJOC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35133171
            Assembly: GCF_030068615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostagnicola sp. A-GB9-2
  ORGANISM  Halostagnicola sp. A-GB9-2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halostagnicola.
REFERENCE   1  (bases 1 to 4679536)
  AUTHORS   Sorokin,D.Y. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4679536)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-Letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASJOC000000000.1.
            The Halostagnicola sp. A-GB9-2 whole genome shotgun (WGS) project
            has the project accession NZ_JASJOC000000000.  This version of the
            project (01) has the accession number NZ_JASJOC010000000, and
            consists of sequences JASJOC010000001-JASJOC010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from D. Y. Sorokin, Winogradsky
            Institute of Microbiology, Russian Academy of Sciences, Prospect
            60-let Octyabrya 7/2, 117312 Moscow, Russia.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 550.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030068615.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 18:12:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,586
            CDSs (total)                      :: 4,534
            Genes (coding)                    :: 4,405
            CDSs (with protein)               :: 4,405
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 53 of 129
            Pseudo Genes (incomplete)         :: 91 of 129
            Pseudo Genes (internal stop)      :: 39 of 129
            Pseudo Genes (multiple problems)  :: 47 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4679536
                     /organism="Halostagnicola sp. A-GB9-2"
                     /mol_type="genomic DNA"
                     /strain="A-GB9-2"
                     /isolation_source="anaerobic sediments of hypersaline soda
                     lake"
                     /db_xref="taxon:3048066"
                     /geo_loc_name="Russia: Altai region, Kulunda Steppe"
                     /collection_date="2021-07"
WGS         JASJOC010000001-JASJOC010000038
WGS_SCAFLD  NZ_JASJOC010000001-NZ_JASJOC010000038
//
LOCUS       NZ_JAVDDV010000000   4300762 bp    DNA     linear   BCT 12-MAY-2024
DEFINITION  Natronolimnohabitans sp. A-GB9, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAVDDV000000000
VERSION     NZ_JAVDDV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36994298
            Assembly: GCF_030848565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronolimnohabitans sp. A-GB9
  ORGANISM  Natronolimnohabitans sp. A-GB9
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronolimnohabitans.
REFERENCE   1  (bases 1 to 4300762)
  AUTHORS   Sorokin,D.Y., Abbas,B. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4300762)
  AUTHORS   Sorokin,D.Y., Abbas,B. and Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVDDV000000000.1.
            The Natronolimnohabitans sp. A-GB9 whole genome shotgun (WGS)
            project has the project accession NZ_JAVDDV000000000.  This version
            of the project (01) has the accession number NZ_JAVDDV010000000,
            and consists of sequences JAVDDV010000001-JAVDDV010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2200x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030848565.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 19:46:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,270
            CDSs (total)                      :: 4,215
            Genes (coding)                    :: 4,096
            CDSs (with protein)               :: 4,096
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 46 of 119
            Pseudo Genes (incomplete)         :: 91 of 119
            Pseudo Genes (internal stop)      :: 18 of 119
            Pseudo Genes (multiple problems)  :: 31 of 119
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4300762
                     /organism="Natronolimnohabitans sp. A-GB9"
                     /mol_type="genomic DNA"
                     /strain="A-GB9"
                     /isolation_source="aerobic sediments from hypersaline soda
                     lake"
                     /db_xref="taxon:3069757"
                     /geo_loc_name="Russia: Altai region, Kulunda Steppe"
                     /collection_date="2018-08-08"
WGS         JAVDDV010000001-JAVDDV010000072
WGS_SCAFLD  NZ_JAVDDV010000001-NZ_JAVDDV010000072
//
LOCUS       NZ_JAMQOO010000000   4434967 bp    DNA     linear   BCT 12-MAY-2024
DEFINITION  Haloferax sp. S2CR25, whole genome shotgun sequencing project.
ACCESSION   NZ_JAMQOO000000000
VERSION     NZ_JAMQOO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28864574
            Assembly: GCF_031624535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. S2CR25
  ORGANISM  Haloferax sp. S2CR25
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4434967)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Haloferax sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4434967)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOO000000000.1.
            The Haloferax sp. S2CR25 whole genome shotgun (WGS) project has the
            project accession NZ_JAMQOO000000000.  This version of the project
            (01) has the accession number NZ_JAMQOO010000000, and consists of
            sequences JAMQOO010000001-JAMQOO010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 339.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031624535.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 20:30:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,443
            CDSs (total)                      :: 4,380
            Genes (coding)                    :: 4,306
            CDSs (with protein)               :: 4,306
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 30 of 74
            Pseudo Genes (incomplete)         :: 57 of 74
            Pseudo Genes (internal stop)      :: 10 of 74
            Pseudo Genes (multiple problems)  :: 19 of 74
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4434967
                     /organism="Haloferax sp. S2CR25"
                     /mol_type="genomic DNA"
                     /strain="S2CR25"
                     /isolation_source="saline soil"
                     /db_xref="taxon:2950535"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQOO010000001-JAMQOO010000041
WGS_SCAFLD  NZ_JAMQOO010000001-NZ_JAMQOO010000041
//
LOCUS       NZ_JAMQOJ010000000   5515768 bp    DNA     linear   BCT 12-MAY-2024
DEFINITION  Natrinema sp. 1APR25-10V2, whole genome shotgun sequencing project.
ACCESSION   NZ_JAMQOJ000000000
VERSION     NZ_JAMQOJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28891269
            Assembly: GCF_031626495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema sp. 1APR25-10V2
  ORGANISM  Natrinema sp. 1APR25-10V2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 5515768)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Natrinema a new haloarchaeum isolate from saline water
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5515768)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOJ000000000.1.
            The Natrinema sp. 1APR25-10V2 whole genome shotgun (WGS) project
            has the project accession NZ_JAMQOJ000000000.  This version of the
            project (01) has the accession number NZ_JAMQOJ010000000, and
            consists of sequences JAMQOJ010000001-JAMQOJ010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 342.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031626495.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 20:45:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,553
            CDSs (total)                      :: 5,492
            Genes (coding)                    :: 5,342
            CDSs (with protein)               :: 5,342
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 60 of 150
            Pseudo Genes (incomplete)         :: 102 of 150
            Pseudo Genes (internal stop)      :: 44 of 150
            Pseudo Genes (multiple problems)  :: 48 of 150
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5515768
                     /organism="Natrinema sp. 1APR25-10V2"
                     /mol_type="genomic DNA"
                     /strain="1APR25-10V2"
                     /isolation_source="Saline soil"
                     /db_xref="taxon:2951081"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQOJ010000001-JAMQOJ010000022
WGS_SCAFLD  NZ_JAMQOJ010000001-NZ_JAMQOJ010000022
//
LOCUS       NZ_JAMQOI010000000   4434967 bp    DNA     linear   BCT 12-MAY-2024
DEFINITION  Haloferax sp. S2CR25-2, whole genome shotgun sequencing project.
ACCESSION   NZ_JAMQOI000000000
VERSION     NZ_JAMQOI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28891267
            Assembly: GCF_031626475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. S2CR25-2
  ORGANISM  Haloferax sp. S2CR25-2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4434967)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Haloferax sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4434967)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOI000000000.1.
            The Haloferax sp. S2CR25-2 whole genome shotgun (WGS) project has
            the project accession NZ_JAMQOI000000000.  This version of the
            project (01) has the accession number NZ_JAMQOI010000000, and
            consists of sequences JAMQOI010000001-JAMQOI010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 339.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031626475.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 20:57:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,443
            CDSs (total)                      :: 4,380
            Genes (coding)                    :: 4,306
            CDSs (with protein)               :: 4,306
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 30 of 74
            Pseudo Genes (incomplete)         :: 57 of 74
            Pseudo Genes (internal stop)      :: 10 of 74
            Pseudo Genes (multiple problems)  :: 19 of 74
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4434967
                     /organism="Haloferax sp. S2CR25-2"
                     /mol_type="genomic DNA"
                     /strain="S2CR25-2"
                     /isolation_source="Saline soil"
                     /db_xref="taxon:2951080"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQOI010000001-JAMQOI010000041
WGS_SCAFLD  NZ_JAMQOI010000001-NZ_JAMQOI010000041
//
LOCUS       NZ_JAZKRY010000000   2851586 bp    DNA     linear   ENV 13-MAY-2024
DEFINITION  MAG: Halolamina sp. isolate NA-0cm_bin.24, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAZKRY000000000
VERSION     NZ_JAZKRY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38145994
            Assembly: GCF_036626355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halolamina sp. (hypersaline lake metagenome)
  ORGANISM  Halolamina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2851586)
  AUTHORS   Maritan,A., Shoemaker,A., Cosar,S., Nupp,S., Menchaca,A.,
            Jackson,T., Dang,A., Baxter,B., Dunham,E., Colman,D.R. and
            Boyd,E.S.
  TITLE     Metagenomic analysis of Great Salt Lake North Arm Sediment Core
            Microbial Communities
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2851586)
  AUTHORS   Colman,D.R., Boyd,E.S. and Dunham,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZKRY000000000.1.
            The Halolamina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAZKRY000000000.  This version of the project
            (01) has the accession number NZ_JAZKRY010000000, and consists of
            sequences JAZKRY010000001-JAZKRY010000141.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.45x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036626355.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 23:15:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,921
            CDSs (total)                      :: 2,877
            Genes (coding)                    :: 2,790
            CDSs (with protein)               :: 2,790
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 10 of 87
            Pseudo Genes (incomplete)         :: 79 of 87
            Pseudo Genes (internal stop)      :: 8 of 87
            Pseudo Genes (multiple problems)  :: 10 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851586
                     /organism="Halolamina sp."
                     /mol_type="genomic DNA"
                     /isolate="NA-0cm_bin.24"
                     /isolation_source="sediments"
                     /db_xref="taxon:1940283"
                     /environmental_sample
                     /geo_loc_name="USA: Great Salt Lake"
                     /lat_lon="41.43783 N 112.67103 W"
                     /collection_date="2016"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JAZKRY010000001-JAZKRY010000141
WGS_SCAFLD  NZ_JAZKRY010000001-NZ_JAZKRY010000141
//
LOCUS       NZ_JALFYV010000000   1663235 bp    DNA     linear   ENV 14-MAY-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate SUG1136, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALFYV000000000
VERSION     NZ_JALFYV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26927462
            Assembly: GCF_022784685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (pig gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1663235)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Metagenome-assembled genomes from swine fecal metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1663235)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2022) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALFYV000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JALFYV000000000.  This version of the
            project (01) has the accession number NZ_JALFYV010000000, and
            consists of sequences JALFYV010000001-JALFYV010000061.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2021
            Assembly Method        :: MEGAHIT v. v. 1.29.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.955742x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022784685.1-RS_2024_05_14
            Annotation Date                   :: 05/14/2024 10:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,831
            CDSs (total)                      :: 1,789
            Genes (coding)                    :: 1,771
            CDSs (with protein)               :: 1,771
            Genes (RNA)                       :: 42
            rRNAs                             :: 3 (16S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 0 of 18
            Pseudo Genes (incomplete)         :: 17 of 18
            Pseudo Genes (internal stop)      :: 1 of 18
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663235
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SUG1136"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2019"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JALFYV010000001-JALFYV010000061
WGS_SCAFLD  NZ_JALFYV010000001-NZ_JALFYV010000061
//
LOCUS       NZ_WJBI01000000      4595892 bp    DNA     linear   BCT 15-MAY-2024
DEFINITION  Methanosarcina sp. DH2, whole genome shotgun sequencing project.
ACCESSION   NZ_WJBI00000000
VERSION     NZ_WJBI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616828
            Assembly: GCF_020804225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. DH2
  ORGANISM  Methanosarcina sp. DH2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4595892)
  AUTHORS   Zhou,J., Holmes,D.E., Tang,H.Y. and Lovley,D.R.
  TITLE     Correlation of Key Physiological Properties of Methanosarcina
            Isolates with Environment of Origin
  JOURNAL   Appl Environ Microbiol 87 (13), e0073121 (2021)
   PUBMED   33931421
REFERENCE   2  (bases 1 to 4595892)
  AUTHORS   Holmes,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2019) Microbiology, University of Massachusetts
            Amherst, 639 North Pleasant Street, Amherst, MA 01003, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WJBI00000000.1.
            The Methanosarcina sp. DH2 whole genome shotgun (WGS) project has
            the project accession NZ_WJBI00000000.  This version of the project
            (01) has the accession number NZ_WJBI01000000, and consists of
            sequences WJBI01000001-WJBI01000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020804225.1-RS_2024_05_15
            Annotation Date                   :: 05/15/2024 03:13:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,985
            CDSs (total)                      :: 3,916
            Genes (coding)                    :: 3,822
            CDSs (with protein)               :: 3,822
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 26 of 94
            Pseudo Genes (incomplete)         :: 61 of 94
            Pseudo Genes (internal stop)      :: 28 of 94
            Pseudo Genes (multiple problems)  :: 18 of 94
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4595892
                     /organism="Methanosarcina sp. DH2"
                     /mol_type="genomic DNA"
                     /strain="DH2"
                     /isolation_source="uranium contaminated subsurface
                     sediments from subsurface aquifer"
                     /db_xref="taxon:2605639"
                     /geo_loc_name="USA: Colorado"
                     /lat_lon="39.53 N 107.78 W"
                     /collection_date="2015-07-15"
WGS         WJBI01000001-WJBI01000037
WGS_SCAFLD  NZ_WJBI01000001-NZ_WJBI01000037
//
LOCUS       NZ_CALCQH010000000   3070459 bp    DNA     linear   ENV 19-MAY-2024
DEFINITION  MAG: uncultured Methanoculleus sp. isolate
            SRR1562003_bin.15_CONCOCT_v1.1_MAG, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CALCQH000000000
VERSION     NZ_CALCQH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14037437
            Sequence Read Archive: SRR1562003
            Assembly: GCF_937897605.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanoculleus sp. (food production metagenome)
  ORGANISM  uncultured Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus; environmental samples.
REFERENCE   1  (bases 1 to 3070459)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALCQH000000000.1.
            The uncultured Methanoculleus sp. whole genome shotgun (WGS)
            project has the project accession NZ_CALCQH000000000.  This version
            of the project (01) has the accession number NZ_CALCQH010000000,
            and consists of sequences CALCQH010000001-CALCQH010000124.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135666.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR1562003.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937897605.1-RS_2024_05_19
            Annotation Date                   :: 05/19/2024 22:27:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,187
            CDSs (total)                      :: 3,125
            Genes (coding)                    :: 3,078
            CDSs (with protein)               :: 3,078
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 5 of 47
            Pseudo Genes (incomplete)         :: 42 of 47
            Pseudo Genes (internal stop)      :: 3 of 47
            Pseudo Genes (multiple problems)  :: 2 of 47
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070459
                     /organism="uncultured Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR1562003_bin.15_CONCOCT_v1.1_MAG"
                     /isolation_source="food production metagenome"
                     /db_xref="taxon:183762"
                     /environmental_sample
                     /metagenome_source="food production metagenome"
                     /metagenomic
WGS         CALCQH010000001-CALCQH010000124
WGS_SCAFLD  NZ_CALCQH010000001-NZ_CALCQH010000124
//
LOCUS       NZ_WJBJ01000000      4574548 bp    DNA     linear   BCT 20-MAY-2024
DEFINITION  Methanosarcina sp. DH1, whole genome shotgun sequencing project.
ACCESSION   NZ_WJBJ00000000
VERSION     NZ_WJBJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616996
            Assembly: GCF_020804205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. DH1
  ORGANISM  Methanosarcina sp. DH1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4574548)
  AUTHORS   Zhou,J., Holmes,D.E., Tang,H.Y. and Lovley,D.R.
  TITLE     Correlation of Key Physiological Properties of Methanosarcina
            Isolates with Environment of Origin
  JOURNAL   Appl Environ Microbiol 87 (13), e0073121 (2021)
   PUBMED   33931421
REFERENCE   2  (bases 1 to 4574548)
  AUTHORS   Holmes,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2019) Microbiology, University of Massachusetts
            Amherst, 639 North Pleasant Street, Amherst, MA 01003, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WJBJ00000000.1.
            The Methanosarcina sp. DH1 whole genome shotgun (WGS) project has
            the project accession NZ_WJBJ00000000.  This version of the project
            (01) has the accession number NZ_WJBJ01000000, and consists of
            sequences WJBJ01000001-WJBJ01000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020804205.1-RS_2024_05_20
            Annotation Date                   :: 05/20/2024 02:44:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,853
            CDSs (total)                      :: 3,783
            Genes (coding)                    :: 3,662
            CDSs (with protein)               :: 3,662
            Genes (RNA)                       :: 70
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 31 of 121
            Pseudo Genes (incomplete)         :: 95 of 121
            Pseudo Genes (internal stop)      :: 35 of 121
            Pseudo Genes (multiple problems)  :: 32 of 121
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4574548
                     /organism="Methanosarcina sp. DH1"
                     /mol_type="genomic DNA"
                     /strain="DH1"
                     /isolation_source="wastewater"
                     /db_xref="taxon:2605695"
                     /geo_loc_name="USA: Massachusetts"
                     /lat_lon="42.45 N 73.24 W"
                     /collection_date="2015-07-20"
WGS         WJBJ01000001-WJBJ01000051
WGS_SCAFLD  NZ_WJBJ01000001-NZ_WJBJ01000051
//
LOCUS       NZ_CALCYR010000000   2433197 bp    DNA     linear   ENV 20-MAY-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            ERR1278103_bin.200_CONCOCT_v1.1_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CALCYR000000000
VERSION     NZ_CALCYR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14080498
            Sequence Read Archive: ERR1278103
            Assembly: GCF_937906425.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobrevibacter sp. (gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2433197)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALCYR000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CALCYR000000000.  This version
            of the project (01) has the accession number NZ_CALCYR010000000,
            and consists of sequences CALCYR010000001-CALCYR010000316.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP136549.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run ERR1278103.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937906425.1-RS_2024_05_20
            Annotation Date                   :: 05/20/2024 11:07:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,859
            CDSs (total)                      :: 1,824
            Genes (coding)                    :: 1,794
            CDSs (with protein)               :: 1,794
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 4 of 30
            Pseudo Genes (incomplete)         :: 28 of 30
            Pseudo Genes (internal stop)      :: 3 of 30
            Pseudo Genes (multiple problems)  :: 4 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433197
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ERR1278103_bin.200_CONCOCT_v1.1_MAG"
                     /isolation_source="gut metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         CALCYR010000001-CALCYR010000316
WGS_SCAFLD  NZ_CALCYR010000001-NZ_CALCYR010000316
//
LOCUS       NZ_JBDKTT010000000   2461750 bp    DNA     linear   ENV 21-MAY-2024
DEFINITION  MAG: Methanoculleus sp. isolate 7_bin.72, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBDKTT000000000
VERSION     NZ_JBDKTT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39190230
            Assembly: GCF_039680065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (wastewater metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2461750)
  AUTHORS   Dang,H., Ewald,J.M. and Mattes,T.E.
  TITLE     Genome-Resolved Metagenomics and Metatranscriptomics Reveal
            Insights into the Ecology and Metabolism of Anaerobic Microbial
            Communities in PCB-Contaminated Sediments
  JOURNAL   Environ Sci Technol 57 (43), 16386-16398 (2023)
   PUBMED   37856784
REFERENCE   2  (bases 1 to 2461750)
  AUTHORS   Dang,H. and Mattes,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2024) Civil and Environmental Engineering,
            University of Iowa, 4258 Seamans Center, Iowa City, IA 52242, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDKTT000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBDKTT000000000.  This version of the project
            (01) has the accession number NZ_JBDKTT010000000, and consists of
            sequences JBDKTT010000001-JBDKTT010000121.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 21-MAR-2023
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6.838397481466436x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039680065.1-RS_2024_05_21
            Annotation Date                   :: 05/21/2024 05:06:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,531
            CDSs (total)                      :: 2,484
            Genes (coding)                    :: 2,443
            CDSs (with protein)               :: 2,443
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 3 of 41
            Pseudo Genes (incomplete)         :: 40 of 41
            Pseudo Genes (internal stop)      :: 1 of 41
            Pseudo Genes (multiple problems)  :: 2 of 41
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2461750
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="7_bin.72"
                     /isolation_source="PCB contaminated wastewater treatment
                     lagoon sediment microcosms"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA: Altavista Wastewater Treatment Plant,
                     Altavista, Virgina"
                     /lat_lon="37.113638 N 79.272834 W"
                     /collection_date="2017-07"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JBDKTT010000001-JBDKTT010000121
WGS_SCAFLD  NZ_JBDKTT010000001-NZ_JBDKTT010000121
//
LOCUS       NZ_SNUV01000000      1986786 bp    DNA     linear   BCT 22-MAY-2024
DEFINITION  Thermococcus sp. 9N3, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUV00000000
VERSION     NZ_SNUV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963461
            Assembly: GCF_012027685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. 9N3
  ORGANISM  Thermococcus sp. 9N3
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1986786)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1986786)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUV00000000.1.
            The Thermococcus sp. 9N3 whole genome shotgun (WGS) project has the
            project accession NZ_SNUV00000000.  This version of the project
            (01) has the accession number NZ_SNUV01000000, and consists of
            sequences SNUV01000001-SNUV01000019.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 36x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027685.1-RS_2024_05_22
            Annotation Date                   :: 05/22/2024 02:16:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,250
            CDSs (total)                      :: 2,197
            Genes (coding)                    :: 2,185
            CDSs (with protein)               :: 2,185
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 2 of 12
            Pseudo Genes (incomplete)         :: 8 of 12
            Pseudo Genes (internal stop)      :: 2 of 12
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986786
                     /organism="Thermococcus sp. 9N3"
                     /mol_type="genomic DNA"
                     /strain="9N3"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:163002"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUV01000001-SNUV01000019
WGS_SCAFLD  NZ_SNUV01000001-NZ_SNUV01000019
//
LOCUS       NZ_SNUT01000000      2374878 bp    DNA     linear   BCT 22-MAY-2024
DEFINITION  Thermococcus sp. 21S7, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUT00000000
VERSION     NZ_SNUT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963464
            Assembly: GCF_012027615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. 21S7
  ORGANISM  Thermococcus sp. 21S7
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2374878)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2374878)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUT00000000.1.
            The Thermococcus sp. 21S7 whole genome shotgun (WGS) project has
            the project accession NZ_SNUT00000000.  This version of the project
            (01) has the accession number NZ_SNUT01000000, and consists of
            sequences SNUT01000001-SNUT01000048.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 28x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027615.1-RS_2024_05_22
            Annotation Date                   :: 05/22/2024 02:17:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,615
            CDSs (total)                      :: 2,561
            Genes (coding)                    :: 2,520
            CDSs (with protein)               :: 2,520
            Genes (RNA)                       :: 54
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 11 of 41
            Pseudo Genes (incomplete)         :: 36 of 41
            Pseudo Genes (internal stop)      :: 2 of 41
            Pseudo Genes (multiple problems)  :: 7 of 41
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374878
                     /organism="Thermococcus sp. 21S7"
                     /mol_type="genomic DNA"
                     /strain="21S7"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638221"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUT01000001-SNUT01000048
WGS_SCAFLD  NZ_SNUT01000001-NZ_SNUT01000048
//
LOCUS       NZ_JAQTND010000000   2294534 bp    DNA     linear   ENV 22-MAY-2024
DEFINITION  MAG: Methanothrix soehngenii isolate STA_56, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQTND000000000
VERSION     NZ_JAQTND000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32731769
            Assembly: GCF_028714415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix soehngenii (landfill metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2294534)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2294534)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQTND000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_JAQTND000000000.  This version of the
            project (01) has the accession number NZ_JAQTND010000000, and
            consists of sequences JAQTND010000001-JAQTND010000127.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6.88x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028714415.1-RS_2024_05_22
            Annotation Date                   :: 05/22/2024 04:34:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,490
            CDSs (total)                      :: 2,444
            Genes (coding)                    :: 2,388
            CDSs (with protein)               :: 2,388
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 2 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 4 of 56
            Pseudo Genes (incomplete)         :: 54 of 56
            Pseudo Genes (internal stop)      :: 0 of 56
            Pseudo Genes (multiple problems)  :: 2 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294534
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="STA_56"
                     /isolation_source="NEUS_A leachate from a leachate well at
                     an active municipal landfill in the North Eastern United
                     States"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQTND010000001-JAQTND010000127
WGS_SCAFLD  NZ_JAQTND010000001-NZ_JAQTND010000127
//
LOCUS       NZ_JAILWR010000000   1851398 bp    DNA     linear   ENV 28-MAY-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate ECS34A1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAILWR000000000
VERSION     NZ_JAILWR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20425663
            Assembly: GCF_025698845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (estuary metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1851398)
  AUTHORS   Liu,L.
  TITLE     Genomes of ammonia-oxidizing archaea derived from marine sediments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1851398)
  AUTHORS   Liu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) School of Life Sciences and Biotechnology,
            Shanghai Jiao Tong University (SJTU), 800 Dongchuan RD. Minhang
            District, Shanghai 200240, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAILWR000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAILWR000000000.  This version of the project
            (01) has the accession number NZ_JAILWR010000000, and consists of
            sequences JAILWR010000001-JAILWR010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5439.57x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025698845.1-RS_2024_05_28
            Annotation Date                   :: 05/28/2024 04:12:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,239
            CDSs (total)                      :: 2,191
            Genes (coding)                    :: 2,181
            CDSs (with protein)               :: 2,181
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 0 of 10
            Pseudo Genes (incomplete)         :: 10 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851398
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="ECS34A1"
                     /isolation_source="enrichment culture inoculated with
                     surface estuarine sediment"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="China: the East China Sea"
                     /lat_lon="30.7672 N 122.8300 E"
                     /collection_date="2021-04-27"
                     /metagenome_source="estuary metagenome"
                     /metagenomic
WGS         JAILWR010000001-JAILWR010000011
WGS_SCAFLD  NZ_JAILWR010000001-NZ_JAILWR010000011
//
LOCUS       NZ_JAANTH010000000   2983094 bp    DNA     linear   BCT 31-MAY-2024
DEFINITION  Halobacterium sp. R2-5, whole genome shotgun sequencing project.
ACCESSION   NZ_JAANTH000000000
VERSION     NZ_JAANTH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14309519
            Assembly: GCF_011734195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium sp. R2-5
  ORGANISM  Halobacterium sp. R2-5
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2983094)
  AUTHORS   Claudia,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2020) Ecology, UJS, Xuefu Street, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAANTH000000000.1.
            The Halobacterium sp. R2-5 whole genome shotgun (WGS) project has
            the project accession NZ_JAANTH000000000.  This version of the
            project (01) has the accession number NZ_JAANTH010000000, and
            consists of sequences JAANTH010000001-JAANTH010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011734195.1-RS_2024_05_31
            Annotation Date                   :: 05/31/2024 02:22:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,187
            CDSs (total)                      :: 3,136
            Genes (coding)                    :: 3,106
            CDSs (with protein)               :: 3,106
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 7 of 30
            Pseudo Genes (incomplete)         :: 26 of 30
            Pseudo Genes (internal stop)      :: 3 of 30
            Pseudo Genes (multiple problems)  :: 5 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983094
                     /organism="Halobacterium sp. R2-5"
                     /mol_type="genomic DNA"
                     /strain="R2-5"
                     /isolation_source="salted radish"
                     /db_xref="taxon:2715751"
                     /geo_loc_name="China"
                     /collection_date="2018"
WGS         JAANTH010000001-JAANTH010000005
WGS_SCAFLD  NZ_JAANTH010000001-NZ_JAANTH010000005
//
LOCUS       NZ_AJVI01000000      1650825 bp    DNA     linear   BCT 03-JUN-2024
DEFINITION  Nitrosopumilus sp. SJ, whole genome shotgun sequencing project.
ACCESSION   NZ_AJVI00000000
VERSION     NZ_AJVI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02469589
            Assembly: GCF_000328945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrosopumilus sp. SJ
  ORGANISM  Nitrosopumilus sp. SJ
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1650825)
  AUTHORS   Park,S.-J.
  TITLE     Genomic analysis of sedimentary ammonia-oxidizing archaea suggests
            unique genomic repertoire for niche specialization
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1650825)
  AUTHORS   Park,S.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2012) Dept. of Microbiology, Chugnbuk National
            University, 12 Gaeshin-dong, Heungduk-gu, Cheongju, Chungbuk
            361-763, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AJVI00000000.1.
            The Nitrosopumilus sp. SJ whole genome shotgun (WGS) project has
            the project accession NZ_AJVI00000000.  This version of the project
            (01) has the accession number NZ_AJVI01000000, and consists of
            sequences AJVI01000001-AJVI01000015.
            Enrichment available from Prof. Rhee S.-K., Chungbuk National
            University, 12 Gaeshin-dong, Heungduk-gu, Cheongju, Chungbuk
            361-763, South Korea.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.3
            Genome Coverage       :: 20x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000328945.1-RS_2024_06_03
            Annotation Date                   :: 06/03/2024 00:53:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,041
            CDSs (total)                      :: 1,994
            Genes (coding)                    :: 1,979
            CDSs (with protein)               :: 1,979
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 10 of 15
            Pseudo Genes (incomplete)         :: 6 of 15
            Pseudo Genes (internal stop)      :: 0 of 15
            Pseudo Genes (multiple problems)  :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650825
                     /organism="Nitrosopumilus sp. SJ"
                     /mol_type="genomic DNA"
                     /strain="SJ"
                     /isolation_source="marine sediment"
                     /db_xref="taxon:1027374"
                     /geo_loc_name="South Korea: the East Sea"
                     /collection_date="2005-08"
WGS         AJVI01000001-AJVI01000015
WGS_SCAFLD  NZ_AJVI01000001-NZ_AJVI01000015
//
LOCUS       NZ_JARKUH010000000   2465982 bp    DNA     linear   ENV 03-JUN-2024
DEFINITION  MAG: Methanothrix sp. isolate Seed_metabat.86, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARKUH000000000
VERSION     NZ_JARKUH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33606036
            Assembly: GCF_029972695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (wastewater metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2465982)
  AUTHORS   Lin,T.-Y.
  TITLE     Validation of 16S rRNA Gene Sequencing and Metagenomics for
            Evaluating Microbial Immigration in a Methanogenic Bioreactor
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2465982)
  AUTHORS   Lin,T.-Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2023) Civil and Environmental Engineering,
            University of Illinois Urbana-Champaign, 205 North Mathews Ave,
            Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARKUH000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JARKUH000000000.  This version of the project
            (01) has the accession number NZ_JARKUH010000000, and consists of
            sequences JARKUH010000001-JARKUH010000131.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. v1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029972695.1-RS_2024_06_02
            Annotation Date                   :: 06/02/2024 01:13:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,478
            CDSs (total)                      :: 2,433
            Genes (coding)                    :: 2,388
            CDSs (with protein)               :: 2,388
            Genes (RNA)                       :: 45
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 6 of 45
            Pseudo Genes (incomplete)         :: 41 of 45
            Pseudo Genes (internal stop)      :: 6 of 45
            Pseudo Genes (multiple problems)  :: 6 of 45
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2465982
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="Seed_metabat.86"
                     /isolation_source="anaerobic digester"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="USA: Urbana, Illinois"
                     /lat_lon="40.12009048 N 88.22574615 W"
                     /collection_date="2021-10-23"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JARKUH010000001-JARKUH010000131
WGS_SCAFLD  NZ_JARKUH010000001-NZ_JARKUH010000131
//
LOCUS       NZ_JASFYM010000000   1762640 bp    DNA     linear   ENV 03-JUN-2024
DEFINITION  MAG: Methanothrix sp. isolate JZ_65_OP_bin_30, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JASFYM000000000
VERSION     NZ_JASFYM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34195768
            Assembly: GCF_030055635.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (hot springs metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 1762640)
  AUTHORS   Hua,Z.-S.
  TITLE     Non-traditional mcr-containing archaea contribute to biological
            methanogenesis in geothermal springs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1762640)
  AUTHORS   Hua,Z.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2023) Department of Environmental Science and
            Engineering, University of Science and Technology of China, No. 96,
            JinZhai Road Baohe District, Hefei, Anhui 230026, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASFYM000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JASFYM000000000.  This version of the project
            (01) has the accession number NZ_JASFYM010000000, and consists of
            sequences JASFYM010000001-JASFYM010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.1x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030055635.1-RS_2024_06_02
            Annotation Date                   :: 06/02/2024 00:52:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,757
            CDSs (total)                      :: 1,707
            Genes (coding)                    :: 1,692
            CDSs (with protein)               :: 1,692
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762640
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="JZ_65_OP_bin_30"
                     /isolation_source="Enrichment culture inoculated with
                     sediment from JinZe-3 pool was maintained at 65 degree"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, JinZe-3
                     pool"
                     /lat_lon="25.44 N 98.46 E"
                     /collection_date="2021-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JASFYM010000001-JASFYM010000033
WGS_SCAFLD  NZ_JASFYM010000001-NZ_JASFYM010000033
//
LOCUS       NZ_LQMW01000000      1383621 bp    DNA     linear   BCT 04-JUN-2024
DEFINITION  Nitrosopumilus sp. Nsub, whole genome shotgun sequencing project.
ACCESSION   NZ_LQMW00000000
VERSION     NZ_LQMW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04386402
            Assembly: GCF_001541925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrosopumilus sp. Nsub
  ORGANISM  Nitrosopumilus sp. Nsub
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1383621)
  AUTHORS   Tian,R., Cai,L., Zhang,W., Wong,T. and Qian,P.
  TITLE     The draft genome sequence of an ammonia-oxidizing archaea from a
            cold seep sponge
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1383621)
  AUTHORS   Tian,R., Cai,L., Zhang,W., Wong,T. and Qian,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2016) Division of Life Science, Hong Kong
            University of Science and Technology, Clear Water Bay, Hong Kong,
            Hong Kong
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LQMW00000000.1.
            The Nitrosopumilus sp. Nsub whole genome shotgun (WGS) project has
            the project accession NZ_LQMW00000000.  This version of the project
            (01) has the accession number NZ_LQMW01000000, and consists of
            sequences LQMW01000001-LQMW01000026.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2015
            Assembly Method        :: SPAdes v. 3.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80.0x
            Sequencing Technology  :: Illumina MiSeq; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001541925.1-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 01:04:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,733
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,668
            CDSs (with protein)               :: 1,668
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 1 of 17
            Pseudo Genes (incomplete)         :: 14 of 17
            Pseudo Genes (internal stop)      :: 3 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383621
                     /organism="Nitrosopumilus sp. Nsub"
                     /mol_type="genomic DNA"
                     /strain="Nsub"
                     /host="Suberites"
                     /db_xref="taxon:1776294"
                     /collection_date="2015-01"
WGS         LQMW01000001-LQMW01000026
WGS_SCAFLD  NZ_LQMW01000001-NZ_LQMW01000026
//
LOCUS       NZ_JAGGMN010000000   2907262 bp    DNA     linear   BCT 04-JUN-2024
DEFINITION  Methanofollis sp. W23, whole genome shotgun sequencing project.
ACCESSION   NZ_JAGGMN000000000
VERSION     NZ_JAGGMN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18258348
            Assembly: GCF_017875325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanofollis sp. W23
  ORGANISM  Methanofollis sp. W23
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanofollis.
REFERENCE   1  (bases 1 to 2907262)
  AUTHORS   Whitman,W.
  TITLE     Genome Encyclopedia of Bacteria and Archaea VI: Functional Genomics
            of Type Strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2907262)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGMN000000000.1.
            The Methanofollis sp. W23 whole genome shotgun (WGS) project has
            the project accession NZ_JAGGMN000000000.  This version of the
            project (01) has the accession number NZ_JAGGMN010000000, and
            consists of sequences JAGGMN010000001-JAGGMN010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 452.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017875325.1-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 04:44:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,568
            CDSs (total)                      :: 2,510
            Genes (coding)                    :: 2,504
            CDSs (with protein)               :: 2,504
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 3 of 6
            Pseudo Genes (incomplete)         :: 5 of 6
            Pseudo Genes (internal stop)      :: 3 of 6
            Pseudo Genes (multiple problems)  :: 3 of 6
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2907262
                     /organism="Methanofollis sp. W23"
                     /mol_type="genomic DNA"
                     /strain="W23"
                     /db_xref="taxon:2817849"
WGS         JAGGMN010000001-JAGGMN010000002
WGS_SCAFLD  NZ_JAGGMN010000001-NZ_JAGGMN010000002
//
LOCUS       NZ_JALPRP010000000   2601197 bp    DNA     linear   BCT 08-JUN-2024
DEFINITION  Methanoculleus sp. 7T, whole genome shotgun sequencing project.
ACCESSION   NZ_JALPRP000000000
VERSION     NZ_JALPRP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27687096
            Assembly: GCF_023195915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus sp. 7T
  ORGANISM  Methanoculleus sp. 7T
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2601197)
  AUTHORS   Zanikov,T., Trubitsyn,V.E. and Shcherbakova,V.A.
  TITLE     Draft genome of a methanogenic archaea isolated from cow rumen
            (Moscow Region, Russia)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2601197)
  AUTHORS   Zanikov,T., Trubitsyn,V.E. and Shcherbakova,V.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-APR-2022) Laboratory of Anaerobic Microorganisms,
            IBPM RAS, Prospect Nauki, Pushchino 142290, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALPRP000000000.1.
            The Methanoculleus sp. 7T whole genome shotgun (WGS) project has
            the project accession NZ_JALPRP000000000.  This version of the
            project (01) has the accession number NZ_JALPRP010000000, and
            consists of sequences JALPRP010000001-JALPRP010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from VKM:B-3409.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-APR-2022
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 744.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023195915.1-RS_2024_06_08
            Annotation Date                   :: 06/08/2024 03:50:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,591
            Genes (coding)                    :: 2,569
            CDSs (with protein)               :: 2,569
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 19 of 22
            Pseudo Genes (internal stop)      :: 3 of 22
            Pseudo Genes (multiple problems)  :: 2 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601197
                     /organism="Methanoculleus sp. 7T"
                     /mol_type="genomic DNA"
                     /strain="7T"
                     /isolation_source="Rumen fluid"
                     /host="cow"
                     /culture_collection="VKM:B-3409"
                     /db_xref="taxon:2937282"
                     /geo_loc_name="Russia: Moscow Region"
                     /collection_date="2016-11"
WGS         JALPRP010000001-JALPRP010000046
WGS_SCAFLD  NZ_JALPRP010000001-NZ_JALPRP010000046
//
LOCUS       NZ_DAOSBC010000000   2578692 bp    DNA     linear   ENV 09-JUN-2024
DEFINITION  MAG: Methanospirillum sp. isolate AMR_MDS_1893, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAOSBC000000000
VERSION     NZ_DAOSBC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32863422
            Sequence Read Archive: SRR4236668
            Assembly: GCF_035360615.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanospirillum sp. (wastewater metagenome)
  ORGANISM  Methanospirillum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 2578692)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2578692)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOSBC000000000.1.
            The Methanospirillum sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAOSBC000000000.  This version of the project
            (01) has the accession number NZ_DAOSBC010000000, and consists of
            sequences DAOSBC010000001-DAOSBC010000398.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035360615.1-RS_2024_06_09
            Annotation Date                   :: 06/09/2024 14:56:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,796
            CDSs (total)                      :: 2,749
            Genes (coding)                    :: 2,629
            CDSs (with protein)               :: 2,629
            Genes (RNA)                       :: 47
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 5 of 120
            Pseudo Genes (incomplete)         :: 113 of 120
            Pseudo Genes (internal stop)      :: 5 of 120
            Pseudo Genes (multiple problems)  :: 3 of 120
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578692
                     /organism="Methanospirillum sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_1893"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:45200"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /lat_lon="36.29 N 139.38 E"
                     /collection_date="2015-05-15"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOSBC010000001-DAOSBC010000398
WGS_SCAFLD  NZ_DAOSBC010000001-NZ_DAOSBC010000398
//
LOCUS       NZ_DAOSET010000000   2593769 bp    DNA     linear   ENV 09-JUN-2024
DEFINITION  MAG: Methanoculleus sp. isolate AMR_MDS_1798, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAOSET000000000
VERSION     NZ_DAOSET000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32863327
            Sequence Read Archive: SRR4236667
            Assembly: GCF_035363275.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. (wastewater metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2593769)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2593769)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOSET000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAOSET000000000.  This version of the project
            (01) has the accession number NZ_DAOSET010000000, and consists of
            sequences DAOSET010000001-DAOSET010000150.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035363275.1-RS_2024_06_09
            Annotation Date                   :: 06/09/2024 14:55:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,689
            CDSs (total)                      :: 2,645
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 1 of 41
            Pseudo Genes (incomplete)         :: 38 of 41
            Pseudo Genes (internal stop)      :: 2 of 41
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593769
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_1798"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="China"
                     /lat_lon="30.66 N 104.06 E"
                     /collection_date="2015-12-16"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOSET010000001-DAOSET010000150
WGS_SCAFLD  NZ_DAOSET010000001-NZ_DAOSET010000150
//
LOCUS       NZ_DAOQUM010000000   2478319 bp    DNA     linear   ENV 09-JUN-2024
DEFINITION  MAG: Methanoculleus sp. isolate AMR_MDS_1114, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAOQUM000000000
VERSION     NZ_DAOQUM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32852457
            Sequence Read Archive: SRR4236649
            Assembly: GCF_035341035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. (wastewater metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2478319)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2478319)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOQUM000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAOQUM000000000.  This version of the project
            (01) has the accession number NZ_DAOQUM010000000, and consists of
            sequences DAOQUM010000001-DAOQUM010000341.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035341035.1-RS_2024_06_09
            Annotation Date                   :: 06/09/2024 14:54:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,654
            CDSs (total)                      :: 2,612
            Genes (coding)                    :: 2,529
            CDSs (with protein)               :: 2,529
            Genes (RNA)                       :: 42
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 0 of 83
            Pseudo Genes (incomplete)         :: 82 of 83
            Pseudo Genes (internal stop)      :: 1 of 83
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478319
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_1114"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="39.84 N 89 W"
                     /collection_date="2014-11-24"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOQUM010000001-DAOQUM010000341
WGS_SCAFLD  NZ_DAOQUM010000001-NZ_DAOQUM010000341
//
LOCUS       NZ_DAOQUD010000000   2152323 bp    DNA     linear   ENV 09-JUN-2024
DEFINITION  MAG: Methanothrix soehngenii isolate AMR_MDS_1123, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAOQUD000000000
VERSION     NZ_DAOQUD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32852466
            Sequence Read Archive: SRR4236649
            Assembly: GCF_035340835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (wastewater metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2152323)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2152323)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOQUD000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAOQUD000000000.  This version of the
            project (01) has the accession number NZ_DAOQUD010000000, and
            consists of sequences DAOQUD010000001-DAOQUD010000209.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035340835.1-RS_2024_06_09
            Annotation Date                   :: 06/09/2024 15:39:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,259
            CDSs (total)                      :: 2,216
            Genes (coding)                    :: 2,151
            CDSs (with protein)               :: 2,151
            Genes (RNA)                       :: 43
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 4 of 65
            Pseudo Genes (incomplete)         :: 63 of 65
            Pseudo Genes (internal stop)      :: 1 of 65
            Pseudo Genes (multiple problems)  :: 3 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152323
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_1123"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="39.84 N 89 W"
                     /collection_date="2014-11-24"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOQUD010000001-DAOQUD010000209
WGS_SCAFLD  NZ_DAOQUD010000001-NZ_DAOQUD010000209
//
LOCUS       NZ_DAOQYS010000000   2176219 bp    DNA     linear   ENV 09-JUN-2024
DEFINITION  MAG: Methanothrix soehngenii isolate AMR_MDS_1004, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAOQYS000000000
VERSION     NZ_DAOQYS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32852347
            Sequence Read Archive: SRR4236648
            Assembly: GCF_035343255.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (wastewater metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2176219)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2176219)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOQYS000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAOQYS000000000.  This version of the
            project (01) has the accession number NZ_DAOQYS010000000, and
            consists of sequences DAOQYS010000001-DAOQYS010000273.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035343255.1-RS_2024_06_09
            Annotation Date                   :: 06/09/2024 15:44:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,285
            CDSs (total)                      :: 2,249
            Genes (coding)                    :: 2,188
            CDSs (with protein)               :: 2,188
            Genes (RNA)                       :: 36
            tRNAs                             :: 35
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 2 of 61
            Pseudo Genes (incomplete)         :: 60 of 61
            Pseudo Genes (internal stop)      :: 1 of 61
            Pseudo Genes (multiple problems)  :: 2 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176219
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_1004"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="39.84 N 89 W"
                     /collection_date="2014-11-24"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOQYS010000001-DAOQYS010000273
WGS_SCAFLD  NZ_DAOQYS010000001-NZ_DAOQYS010000273
//
LOCUS       NZ_DAOLPI010000000   2312961 bp    DNA     linear   ENV 17-JUN-2024
DEFINITION  MAG: Methanoculleus sp. isolate AMR_MDS_4739, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAOLPI000000000
VERSION     NZ_DAOLPI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32866718
            Sequence Read Archive: SRR5168924
            Assembly: GCF_035417485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. (wastewater metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2312961)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2312961)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOLPI000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAOLPI000000000.  This version of the project
            (01) has the accession number NZ_DAOLPI010000000, and consists of
            sequences DAOLPI010000001-DAOLPI010000170.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035417485.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 02:32:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,415
            CDSs (total)                      :: 2,374
            Genes (coding)                    :: 2,328
            CDSs (with protein)               :: 2,328
            Genes (RNA)                       :: 41
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 0 of 46
            Pseudo Genes (incomplete)         :: 45 of 46
            Pseudo Genes (internal stop)      :: 1 of 46
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2312961
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_4739"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="41.53 N 90.43 W"
                     /collection_date="2015-02-12"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOLPI010000001-DAOLPI010000170
WGS_SCAFLD  NZ_DAOLPI010000001-NZ_DAOLPI010000170
//
LOCUS       NZ_DAOOUG010000000   2631341 bp    DNA     linear   ENV 17-JUN-2024
DEFINITION  MAG: Methanospirillum hungatei isolate AMR_MDS_2473, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAOOUG000000000
VERSION     NZ_DAOOUG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32864548
            Sequence Read Archive: SRR4244066
            Assembly: GCF_035390695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanospirillum hungatei (wastewater metagenome)
  ORGANISM  Methanospirillum hungatei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 2631341)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2631341)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOOUG000000000.1.
            The Methanospirillum hungatei whole genome shotgun (WGS) project
            has the project accession NZ_DAOOUG000000000.  This version of the
            project (01) has the accession number NZ_DAOOUG010000000, and
            consists of sequences DAOOUG010000001-DAOOUG010000185.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035390695.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 02:35:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,675
            Genes (coding)                    :: 2,612
            CDSs (with protein)               :: 2,612
            Genes (RNA)                       :: 42
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 1 of 63
            Pseudo Genes (incomplete)         :: 61 of 63
            Pseudo Genes (internal stop)      :: 2 of 63
            Pseudo Genes (multiple problems)  :: 1 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2631341
                     /organism="Methanospirillum hungatei"
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_2473"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:2203"
                     /environmental_sample
                     /geo_loc_name="Hong Kong"
                     /lat_lon="22.28 N 114.17 E"
                     /collection_date="2015-01-27"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOOUG010000001-DAOOUG010000185
WGS_SCAFLD  NZ_DAOOUG010000001-NZ_DAOOUG010000185
//
LOCUS       NZ_DAONKG010000000   2553954 bp    DNA     linear   ENV 17-JUN-2024
DEFINITION  MAG: Methanospirillum sp. isolate AMR_MDS_3719, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAONKG000000000
VERSION     NZ_DAONKG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32865690
            Sequence Read Archive: SRR5007227
            Assembly: GCF_035406105.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanospirillum sp. (wastewater metagenome)
  ORGANISM  Methanospirillum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 2553954)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2553954)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAONKG000000000.1.
            The Methanospirillum sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAONKG000000000.  This version of the project
            (01) has the accession number NZ_DAONKG010000000, and consists of
            sequences DAONKG010000001-DAONKG010000388.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035406105.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 02:33:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,746
            CDSs (total)                      :: 2,702
            Genes (coding)                    :: 2,578
            CDSs (with protein)               :: 2,578
            Genes (RNA)                       :: 44
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 3 of 124
            Pseudo Genes (incomplete)         :: 116 of 124
            Pseudo Genes (internal stop)      :: 7 of 124
            Pseudo Genes (multiple problems)  :: 2 of 124
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553954
                     /organism="Methanospirillum sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_3719"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:45200"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /lat_lon="36.29 N 139.38 E"
                     /collection_date="2015-05-15"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAONKG010000001-DAONKG010000388
WGS_SCAFLD  NZ_DAONKG010000001-NZ_DAONKG010000388
//
LOCUS       NZ_DAONYD010000000   2351095 bp    DNA     linear   ENV 17-JUN-2024
DEFINITION  MAG: Methanospirillum sp. isolate AMR_MDS_4131, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAONYD000000000
VERSION     NZ_DAONYD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32866102
            Sequence Read Archive: SRR5007348
            Assembly: GCF_035414165.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanospirillum sp. (wastewater metagenome)
  ORGANISM  Methanospirillum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 2351095)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2351095)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAONYD000000000.1.
            The Methanospirillum sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAONYD000000000.  This version of the project
            (01) has the accession number NZ_DAONYD010000000, and consists of
            sequences DAONYD010000001-DAONYD010000358.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035414165.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 02:35:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,462
            CDSs (total)                      :: 2,423
            Genes (coding)                    :: 2,332
            CDSs (with protein)               :: 2,332
            Genes (RNA)                       :: 39
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 9 of 91
            Pseudo Genes (incomplete)         :: 87 of 91
            Pseudo Genes (internal stop)      :: 1 of 91
            Pseudo Genes (multiple problems)  :: 6 of 91
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351095
                     /organism="Methanospirillum sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_4131"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:45200"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="42.35 N 70.96 W"
                     /collection_date="2015-03-03"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAONYD010000001-DAONYD010000358
WGS_SCAFLD  NZ_DAONYD010000001-NZ_DAONYD010000358
//
LOCUS       NZ_DAOOUJ010000000   3372003 bp    DNA     linear   ENV 17-JUN-2024
DEFINITION  MAG: Methanosarcina sp. isolate AMR_MDS_2470, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAOOUJ000000000
VERSION     NZ_DAOOUJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32864545
            Sequence Read Archive: SRR4244066
            Assembly: GCF_035390745.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosarcina sp. (wastewater metagenome)
  ORGANISM  Methanosarcina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3372003)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 3372003)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOOUJ000000000.1.
            The Methanosarcina sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAOOUJ000000000.  This version of the project
            (01) has the accession number NZ_DAOOUJ010000000, and consists of
            sequences DAOOUJ010000001-DAOOUJ010000142.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035390745.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 02:36:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,980
            CDSs (total)                      :: 2,922
            Genes (coding)                    :: 2,871
            CDSs (with protein)               :: 2,871
            Genes (RNA)                       :: 58
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 15 of 51
            Pseudo Genes (incomplete)         :: 41 of 51
            Pseudo Genes (internal stop)      :: 12 of 51
            Pseudo Genes (multiple problems)  :: 14 of 51
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372003
                     /organism="Methanosarcina sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_2470"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:2213"
                     /environmental_sample
                     /geo_loc_name="Hong Kong"
                     /lat_lon="22.28 N 114.17 E"
                     /collection_date="2015-01-27"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOOUJ010000001-DAOOUJ010000142
WGS_SCAFLD  NZ_DAOOUJ010000001-NZ_DAOOUJ010000142
//
LOCUS       NZ_DAONXH010000000   2089811 bp    DNA     linear   ENV 17-JUN-2024
DEFINITION  MAG: Methanothrix soehngenii isolate AMR_MDS_4153, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAONXH000000000
VERSION     NZ_DAONXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32866124
            Sequence Read Archive: SRR5007348
            Assembly: GCF_035413665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (wastewater metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2089811)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2089811)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAONXH000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAONXH000000000.  This version of the
            project (01) has the accession number NZ_DAONXH010000000, and
            consists of sequences DAONXH010000001-DAONXH010000246.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035413665.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 03:11:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,216
            CDSs (total)                      :: 2,182
            Genes (coding)                    :: 2,106
            CDSs (with protein)               :: 2,106
            Genes (RNA)                       :: 34
            tRNAs                             :: 33
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 3 of 76
            Pseudo Genes (incomplete)         :: 73 of 76
            Pseudo Genes (internal stop)      :: 2 of 76
            Pseudo Genes (multiple problems)  :: 2 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089811
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_4153"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="42.35 N 70.96 W"
                     /collection_date="2015-03-03"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAONXH010000001-DAONXH010000246
WGS_SCAFLD  NZ_DAONXH010000001-NZ_DAONXH010000246
//
LOCUS       NZ_DAOTJZ010000000   2232394 bp    DNA     linear   ENV 17-JUN-2024
DEFINITION  MAG: Methanothrix sp. isolate AMR_MDS_2986, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAOTJZ000000000
VERSION     NZ_DAOTJZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33868010
            Sequence Read Archive: SRR5007140
            Assembly: GCF_035448965.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix sp. (wastewater metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2232394)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2232394)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOTJZ000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAOTJZ000000000.  This version of the project
            (01) has the accession number NZ_DAOTJZ010000000, and consists of
            sequences DAOTJZ010000001-DAOTJZ010000136.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035448965.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 03:40:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,268
            CDSs (total)                      :: 2,224
            Genes (coding)                    :: 2,169
            CDSs (with protein)               :: 2,169
            Genes (RNA)                       :: 44
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 6 of 55
            Pseudo Genes (incomplete)         :: 52 of 55
            Pseudo Genes (internal stop)      :: 4 of 55
            Pseudo Genes (multiple problems)  :: 5 of 55
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232394
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_2986"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /lat_lon="34.72 N 135.27 E"
                     /collection_date="2015-05-26"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOTJZ010000001-DAOTJZ010000136
WGS_SCAFLD  NZ_DAOTJZ010000001-NZ_DAOTJZ010000136
//
LOCUS       NZ_DAOTIA010000000   2189087 bp    DNA     linear   ENV 17-JUN-2024
DEFINITION  MAG: Methanothrix sp. isolate AMR_MDS_3037, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAOTIA000000000
VERSION     NZ_DAOTIA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33868061
            Sequence Read Archive: SRR5007144
            Assembly: GCF_035447905.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix sp. (wastewater metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2189087)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2189087)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOTIA000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAOTIA000000000.  This version of the project
            (01) has the accession number NZ_DAOTIA010000000, and consists of
            sequences DAOTIA010000001-DAOTIA010000215.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035447905.1-RS_2024_06_17
            Annotation Date                   :: 06/17/2024 03:46:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,309
            CDSs (total)                      :: 2,268
            Genes (coding)                    :: 2,216
            CDSs (with protein)               :: 2,216
            Genes (RNA)                       :: 41
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 3 of 52
            Pseudo Genes (incomplete)         :: 51 of 52
            Pseudo Genes (internal stop)      :: 0 of 52
            Pseudo Genes (multiple problems)  :: 2 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189087
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_3037"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Hong Kong"
                     /lat_lon="22.28 N 114.17 E"
                     /collection_date="2014-12-17"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOTIA010000001-DAOTIA010000215
WGS_SCAFLD  NZ_DAOTIA010000001-NZ_DAOTIA010000215
//
LOCUS       NZ_JAHKLR010000000   2470617 bp    DNA     linear   ENV 03-JUL-2024
DEFINITION  MAG: Methanobacterium sp. isolate MAG 288, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHKLR000000000
VERSION     NZ_JAHKLR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19322293
            Assembly: GCF_020854955.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (sludge metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2470617)
  AUTHORS   Sampara,P., Gagliano,M.C., Plugge,C.M., Temmink,H., Sudmalis,D. and
            Ziels,R.M.
  TITLE     Functional insights of salinity-stress related pathways in
            metagenome-resolved Methanothrix genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2470617)
  AUTHORS   Sampara,P., Gagliano,M.C., Plugge,C.M., Temmink,H., Sudmalis,D. and
            Ziels,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAY-2021) Civil Engineering, The University of
            British Columbia, 1301-6250 Applied Sciences Ln, Vancouver, British
            Columbia V6T1Z4, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHKLR000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAHKLR000000000.  This version of the project
            (01) has the accession number NZ_JAHKLR010000000, and consists of
            sequences JAHKLR010000001-JAHKLR010000086.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 25-MAY-2019
            Assembly Method        :: MEGAHIT v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020854955.1-RS_2024_07_03
            Annotation Date                   :: 07/03/2024 04:10:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,468
            CDSs (total)                      :: 2,424
            Genes (coding)                    :: 2,395
            CDSs (with protein)               :: 2,395
            Genes (RNA)                       :: 44
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 3 of 29
            Pseudo Genes (incomplete)         :: 25 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470617
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="MAG 288"
                     /isolation_source="granular sludge from mesophilic upflow
                     sludge blanket reactor"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="Netherlands: Wageningen, Gelderland"
                     /lat_lon="51.9691 N 5.6654 E"
                     /collection_date="2016-08-03"
                     /metagenome_source="sludge metagenome"
                     /metagenomic
WGS         JAHKLR010000001-JAHKLR010000086
WGS_SCAFLD  NZ_JAHKLR010000001-NZ_JAHKLR010000086
//
LOCUS       NZ_DAHWLN010000000   1537180 bp    DNA     linear   ENV 03-JUL-2024
DEFINITION  MAG: Acidiplasma sp. isolate clean202, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAHWLN000000000
VERSION     NZ_DAHWLN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28405252
            Sequence Read Archive: SRR13223810
            Assembly: GCF_027331845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Acidiplasma sp. (mine drainage metagenome)
  ORGANISM  Acidiplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1537180)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537180)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAHWLN000000000.1.
            The Acidiplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAHWLN000000000.  This version of the project
            (01) has the accession number NZ_DAHWLN010000000, and consists of
            sequences DAHWLN010000001-DAHWLN010000083.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027331845.1-RS_2024_07_03
            Annotation Date                   :: 07/03/2024 04:53:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,674
            CDSs (total)                      :: 1,623
            Genes (coding)                    :: 1,588
            CDSs (with protein)               :: 1,588
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 8 of 35
            Pseudo Genes (incomplete)         :: 32 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 5 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537180
                     /organism="Acidiplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="clean202"
                     /isolation_source="sediment"
                     /db_xref="taxon:1872114"
                     /environmental_sample
                     /geo_loc_name="China: Anhui, Tongling"
                     /lat_lon="30.94038 N 117.98977 E"
                     /collection_date="2016-10-30"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAHWLN010000001-DAHWLN010000083
WGS_SCAFLD  NZ_DAHWLN010000001-NZ_DAHWLN010000083
//
LOCUS       NZ_JARRCC010000000   1934538 bp    DNA     linear   ENV 03-JUL-2024
DEFINITION  MAG: Archaeoglobus sp. isolate DJKA110_ANT-KO_bin.46, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARRCC000000000
VERSION     NZ_JARRCC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33401081
            Assembly: GCF_029982885.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Archaeoglobus sp. (subsurface metagenome)
  ORGANISM  Archaeoglobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi;
            Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
REFERENCE   1  (bases 1 to 1934538)
  AUTHORS   Amundson,K. and Wilkins,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2023) Soil and Crop Sciences, Colorado State
            University, 1170 Campus Delivery, Fort Collins, CO 80523, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRCC000000000.1.
            The Archaeoglobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JARRCC000000000.  This version of the project
            (01) has the accession number NZ_JARRCC010000000, and consists of
            sequences JARRCC010000001-JARRCC010000121.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: idba-ud v. 1.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 6.42056228x
            Sequencing Technology  :: Illumnina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029982885.1-RS_2024_07_03
            Annotation Date                   :: 07/03/2024 05:21:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,351
            CDSs (total)                      :: 2,303
            Genes (coding)                    :: 2,248
            CDSs (with protein)               :: 2,248
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 9 of 55
            Pseudo Genes (incomplete)         :: 47 of 55
            Pseudo Genes (internal stop)      :: 8 of 55
            Pseudo Genes (multiple problems)  :: 7 of 55
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934538
                     /organism="Archaeoglobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DJKA110_ANT-KO_bin.46"
                     /isolation_source="Produced fluids from hydraulically
                     fractured shales"
                     /db_xref="taxon:1872626"
                     /environmental_sample
                     /geo_loc_name="USA: Colorado"
                     /lat_lon="40.411582 N 104.348363 W"
                     /collection_date="2019"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JARRCC010000001-JARRCC010000121
WGS_SCAFLD  NZ_JARRCC010000001-NZ_JARRCC010000121
//
LOCUS       NZ_JAPYVV010000000   2017867 bp    DNA     linear   ENV 03-JUL-2024
DEFINITION  MAG: Thermofilum sp. isolate RSNP11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPYVV000000000
VERSION     NZ_JAPYVV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32179642
            Assembly: GCF_028276695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 2017867)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Relationships between fluid mixing, biodiversity, and
            chemosynthetic primary productivity in Yellowstone hot springs
  JOURNAL   Environ Microbiol 25 (5), 1022-1040 (2023)
   PUBMED   36651919
REFERENCE   2  (bases 1 to 2017867)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2022) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPYVV000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAPYVV000000000.  This version of the project
            (01) has the accession number NZ_JAPYVV010000000, and consists of
            sequences JAPYVV010000001-JAPYVV010000131.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 59.82x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028276695.1-RS_2024_07_03
            Annotation Date                   :: 07/03/2024 05:14:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,333
            CDSs (total)                      :: 2,286
            Genes (coding)                    :: 2,258
            CDSs (with protein)               :: 2,258
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 0 of 28
            Pseudo Genes (incomplete)         :: 26 of 28
            Pseudo Genes (internal stop)      :: 2 of 28
            CRISPR Arrays                     :: 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017867
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="RSNP11"
                     /isolation_source="Hot spring water"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park"
                     /lat_lon="44.4514 N 110.4332 W"
                     /collection_date="2018"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAPYVV010000001-JAPYVV010000131
WGS_SCAFLD  NZ_JAPYVV010000001-NZ_JAPYVV010000131
//
LOCUS       NZ_JABLXT010000000   1832060 bp    DNA     linear   ENV 04-JUL-2024
DEFINITION  MAG: Methanothrix sp. isolate Ch96, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JABLXT000000000
VERSION     NZ_JABLXT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14896065
            Assembly: GCF_013177915.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (subsurface metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 1832060)
  AUTHORS   Kadnikov,V., Mardanov,A.V., Beletsky,A.V., Karnachuk,O.V. and
            Ravin,N.V.
  TITLE     Microbial life in the deep subsurface aquifer illuminated by
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1832060)
  AUTHORS   Kadnikov,V., Mardanov,A.V., Beletsky,A.V., Karnachuk,O.V. and
            Ravin,N.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2020) Lab of Molecular Cloning, Institute of
            Bioengineering, Research Center of Biotechnology of Ras, Prosp.
            60-Let Oktyabrya, Bld 7-1, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABLXT000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JABLXT000000000.  This version of the project
            (01) has the accession number NZ_JABLXT010000000, and consists of
            sequences JABLXT010000001-JABLXT010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.7.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 219x
            Sequencing Technology  :: Illumina Hiseq 2500; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013177915.1-RS_2024_07_04
            Annotation Date                   :: 07/04/2024 02:35:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,750
            Genes (coding)                    :: 1,733
            CDSs (with protein)               :: 1,733
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 8 of 17
            Pseudo Genes (incomplete)         :: 12 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            Pseudo Genes (multiple problems)  :: 3 of 17
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832060
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="Ch96"
                     /isolation_source="2.8-km deep subsurface aquifer"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Russia: Chazhemto settlement, Tomsk oblast"
                     /lat_lon="58.060226 N 82.826753 E"
                     /collection_date="2016-04-28"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JABLXT010000001-JABLXT010000003
WGS_SCAFLD  NZ_JABLXT010000001-NZ_JABLXT010000003
//
LOCUS       NZ_JAGOLN010000000   2790421 bp    DNA     linear   ENV 04-JUL-2024
DEFINITION  MAG: Methanothrix sp. isolate Go_UH_bin_176, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGOLN000000000
VERSION     NZ_JAGOLN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18120163
            Assembly: GCF_017994095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (wastewater metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2790421)
  AUTHORS   Schneider,D.
  TITLE     Metagenome-Assembled Genomes of different Wastewater Treatment
            Stages in Germany
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2790421)
  AUTHORS   Schneider,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2021) Institute of Microbiology and Genetics (AG
            Daniel), University of Goettingen, Grisebachstr. 8, Goettingen
            37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGOLN000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAGOLN000000000.  This version of the project
            (01) has the accession number NZ_JAGOLN010000000, and consists of
            sequences JAGOLN010000001-JAGOLN010000126.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-DEC-2019
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45.9425650555556x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017994095.1-RS_2024_07_04
            Annotation Date                   :: 07/04/2024 03:26:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,910
            CDSs (total)                      :: 2,862
            Genes (coding)                    :: 2,806
            CDSs (with protein)               :: 2,806
            Genes (RNA)                       :: 48
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 6 of 56
            Pseudo Genes (incomplete)         :: 54 of 56
            Pseudo Genes (internal stop)      :: 1 of 56
            Pseudo Genes (multiple problems)  :: 5 of 56
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790421
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="Go_UH_bin_176"
                     /isolation_source="wastewater"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Germany: Goettingen"
                     /lat_lon="51.549723 N 9.941877 E"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JAGOLN010000001-JAGOLN010000126
WGS_SCAFLD  NZ_JAGOLN010000001-NZ_JAGOLN010000126
//
LOCUS       NZ_DAICRW010000000   1439796 bp    DNA     linear   ENV 04-JUL-2024
DEFINITION  MAG: Acidiplasma sp. isolate clean2756, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAICRW000000000
VERSION     NZ_DAICRW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28406973
            Sequence Read Archive: SRR13300764
            Assembly: GCF_027368395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Acidiplasma sp. (mine drainage metagenome)
  ORGANISM  Acidiplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1439796)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1439796)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAICRW000000000.1.
            The Acidiplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAICRW000000000.  This version of the project
            (01) has the accession number NZ_DAICRW010000000, and consists of
            sequences DAICRW010000001-DAICRW010000121.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027368395.1-RS_2024_07_04
            Annotation Date                   :: 07/04/2024 05:26:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,557
            CDSs (total)                      :: 1,512
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 0 of 32
            Pseudo Genes (incomplete)         :: 30 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 2 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1439796
                     /organism="Acidiplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="clean2756"
                     /isolation_source="sediment"
                     /db_xref="taxon:1872114"
                     /environmental_sample
                     /geo_loc_name="China: Guangxi, Wuyi"
                     /lat_lon="25.14787 N 107.50102 E"
                     /collection_date="2016-12-07"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAICRW010000001-DAICRW010000121
WGS_SCAFLD  NZ_DAICRW010000001-NZ_DAICRW010000121
//
LOCUS       NZ_DAICRY010000000   1559814 bp    DNA     linear   ENV 04-JUL-2024
DEFINITION  MAG: Acidiplasma sp. isolate clean2759, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAICRY000000000
VERSION     NZ_DAICRY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28406975
            Sequence Read Archive: SRR13188940
            Assembly: GCF_027368355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Acidiplasma sp. (mine drainage metagenome)
  ORGANISM  Acidiplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1559814)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559814)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAICRY000000000.1.
            The Acidiplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAICRY000000000.  This version of the project
            (01) has the accession number NZ_DAICRY010000000, and consists of
            sequences DAICRY010000001-DAICRY010000083.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027368355.1-RS_2024_07_04
            Annotation Date                   :: 07/04/2024 05:22:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,684
            CDSs (total)                      :: 1,637
            Genes (coding)                    :: 1,599
            CDSs (with protein)               :: 1,599
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 5 of 38
            Pseudo Genes (incomplete)         :: 35 of 38
            Pseudo Genes (internal stop)      :: 3 of 38
            Pseudo Genes (multiple problems)  :: 5 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559814
                     /organism="Acidiplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="clean2759"
                     /isolation_source="sediment"
                     /db_xref="taxon:1872114"
                     /environmental_sample
                     /geo_loc_name="China: Guangxi, Longshenao"
                     /lat_lon="24.83428 N 107.56987 E"
                     /collection_date="2016-12-07"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAICRY010000001-DAICRY010000083
WGS_SCAFLD  NZ_DAICRY010000001-NZ_DAICRY010000083
//
LOCUS       NZ_DAICRZ010000000   1601778 bp    DNA     linear   ENV 04-JUL-2024
DEFINITION  MAG: Acidiplasma sp. isolate clean2760, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAICRZ000000000
VERSION     NZ_DAICRZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28406976
            Sequence Read Archive: SRR13188906
            Assembly: GCF_027368325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Acidiplasma sp. (mine drainage metagenome)
  ORGANISM  Acidiplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1601778)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601778)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAICRZ000000000.1.
            The Acidiplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAICRZ000000000.  This version of the project
            (01) has the accession number NZ_DAICRZ010000000, and consists of
            sequences DAICRZ010000001-DAICRZ010000119.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027368325.1-RS_2024_07_04
            Annotation Date                   :: 07/04/2024 05:28:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,762
            CDSs (total)                      :: 1,718
            Genes (coding)                    :: 1,666
            CDSs (with protein)               :: 1,666
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 5 of 52
            Pseudo Genes (incomplete)         :: 49 of 52
            Pseudo Genes (internal stop)      :: 3 of 52
            Pseudo Genes (multiple problems)  :: 3 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601778
                     /organism="Acidiplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="clean2760"
                     /isolation_source="sediment"
                     /db_xref="taxon:1872114"
                     /environmental_sample
                     /geo_loc_name="China: Guangxi, Longshenao"
                     /lat_lon="24.83311 N 107.56905 E"
                     /collection_date="2016-12-07"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAICRZ010000001-DAICRZ010000119
WGS_SCAFLD  NZ_DAICRZ010000001-NZ_DAICRZ010000119
//
LOCUS       NZ_JASKLM010000000   1700551 bp    DNA     linear   ENV 04-JUL-2024
DEFINITION  MAG: Pyrococcus sp. isolate DJKA75_ANT-F21_bin.26, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JASKLM000000000
VERSION     NZ_JASKLM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33401203
            Assembly: GCF_030153625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrococcus sp. (subsurface metagenome)
  ORGANISM  Pyrococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1700551)
  AUTHORS   Amundson,K. and Wilkins,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAY-2023) Soil and Crop Sciences, Colorado State
            University, 1170 Campus Delivery, Fort Collins, CO 80523, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASKLM000000000.1.
            The Pyrococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JASKLM000000000.  This version of the project
            (01) has the accession number NZ_JASKLM010000000, and consists of
            sequences JASKLM010000001-JASKLM010000078.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: idba-ud v. 1.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 7.069902597x
            Sequencing Technology  :: Illumnina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030153625.1-RS_2024_07_04
            Annotation Date                   :: 07/04/2024 05:27:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,945
            CDSs (total)                      :: 1,886
            Genes (coding)                    :: 1,778
            CDSs (with protein)               :: 1,778
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (5S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 34 of 108
            Pseudo Genes (incomplete)         :: 77 of 108
            Pseudo Genes (internal stop)      :: 10 of 108
            Pseudo Genes (multiple problems)  :: 9 of 108
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700551
                     /organism="Pyrococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DJKA75_ANT-F21_bin.26"
                     /isolation_source="Produced fluids from hydraulically
                     fractured shales"
                     /db_xref="taxon:33866"
                     /environmental_sample
                     /geo_loc_name="USA: Colorado"
                     /lat_lon="40.411582 N 104.348363 W"
                     /collection_date="2019"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JASKLM010000001-JASKLM010000078
WGS_SCAFLD  NZ_JASKLM010000001-NZ_JASKLM010000078
//
LOCUS       NZ_JAPWTY010000000   1534601 bp    DNA     linear   ENV 04-JUL-2024
DEFINITION  MAG: Thermofilum sp. isolate RSNS14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPWTY000000000
VERSION     NZ_JAPWTY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32179826
            Assembly: GCF_028275805.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1534601)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Relationships between fluid mixing, biodiversity, and
            chemosynthetic primary productivity in Yellowstone hot springs
  JOURNAL   Environ Microbiol 25 (5), 1022-1040 (2023)
   PUBMED   36651919
REFERENCE   2  (bases 1 to 1534601)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2022) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPWTY000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAPWTY000000000.  This version of the project
            (01) has the accession number NZ_JAPWTY010000000, and consists of
            sequences JAPWTY010000001-JAPWTY010000088.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 297.60x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028275805.1-RS_2024_07_04
            Annotation Date                   :: 07/04/2024 05:47:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,752
            CDSs (total)                      :: 1,707
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 0 of 27
            Pseudo Genes (incomplete)         :: 26 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            CRISPR Arrays                     :: 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534601
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="RSNS14"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park"
                     /lat_lon="44.4514 N 110.4332 W"
                     /collection_date="2018"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAPWTY010000001-JAPWTY010000088
WGS_SCAFLD  NZ_JAPWTY010000001-NZ_JAPWTY010000088
//
LOCUS       NZ_CAKVML010000000   1806134 bp    DNA     linear   ENV 05-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_Mo
            Bio_hadza-E-H_N_14_2337.102, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAKVML000000000
VERSION     NZ_CAKVML000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13494885
            Sequence Read Archive: ERR7738269
            Assembly: GCF_934772625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (human gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1806134)
  AUTHORS   Sonnenburg L,J., Merrill D,B., Olm R,M. and Carter M,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2022) Stanford University School of Medicine,
            Sonnenburg Lab, Department of Microbiology and Immunology Stanford
            University, School of Medicine Fairchild Science Building, Rm D307a
            299 Campus Drive Stanford, CA 94305-5124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKVML000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAKVML000000000.  This version
            of the project (01) has the accession number NZ_CAKVML010000000,
            and consists of sequences CAKVML010000001-CAKVML010000018.
            uncultured Methanobrevibacter sp. MAG assembled and binned from
            ERR7738269.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934772625.1-RS_2024_07_05
            Annotation Date                   :: 07/05/2024 03:10:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,764
            CDSs (total)                      :: 1,728
            Genes (coding)                    :: 1,706
            CDSs (with protein)               :: 1,706
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 11 of 22
            Pseudo Genes (incomplete)         :: 9 of 22
            Pseudo Genes (internal stop)      :: 6 of 22
            Pseudo Genes (multiple problems)  :: 4 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806134
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K
                     77_MERGED__Hadza_MoBio_hadza-E-H_N_14_2337.102"
                     /isolation_source="human feces"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKVML010000001-CAKVML010000018
WGS_SCAFLD  NZ_CAKVML010000001-NZ_CAKVML010000018
//
LOCUS       NZ_CAOJUQ010000000   1638020 bp    DNA     linear   ENV 06-JUL-2024
DEFINITION  MAG: uncultured Methanosphaera sp. isolate
            SRR17622767_bin.108_metawrap_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAOJUQ000000000
VERSION     NZ_CAOJUQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA112353457
            Sequence Read Archive: SRR17622767
            Assembly: GCF_948444175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanosphaera sp. (mouse gut metagenome)
  ORGANISM  uncultured Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera; environmental samples.
REFERENCE   1  (bases 1 to 1638020)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAOJUQ000000000.1.
            The uncultured Methanosphaera sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAOJUQ000000000.  This version
            of the project (01) has the accession number NZ_CAOJUQ010000000,
            and consists of sequences CAOJUQ010000001-CAOJUQ010000045.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set SRP349507.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR17622767.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_948444175.1-RS_2024_07_06
            Annotation Date                   :: 07/06/2024 06:29:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,556
            CDSs (total)                      :: 1,517
            Genes (coding)                    :: 1,508
            CDSs (with protein)               :: 1,508
            Genes (RNA)                       :: 39
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 1 of 9
            Pseudo Genes (incomplete)         :: 8 of 9
            Pseudo Genes (internal stop)      :: 1 of 9
            Pseudo Genes (multiple problems)  :: 1 of 9
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638020
                     /organism="uncultured Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR17622767_bin.108_metawrap_v1.3_MAG"
                     /isolation_source="mouse gut metagenome"
                     /db_xref="taxon:262501"
                     /environmental_sample
                     /metagenome_source="mouse gut metagenome"
                     /metagenomic
WGS         CAOJUQ010000001-CAOJUQ010000045
WGS_SCAFLD  NZ_CAOJUQ010000001-NZ_CAOJUQ010000045
//
LOCUS       NZ_CAKVFL010000000   1795814 bp    DNA     linear   ENV 06-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_Mo
            Bio_hadza-E-H_E_17_1727.272, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAKVFL000000000
VERSION     NZ_CAKVFL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13472945
            Sequence Read Archive: ERR7738626
            Assembly: GCF_934746735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (human gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1795814)
  AUTHORS   Sonnenburg L,J., Merrill D,B., Olm R,M. and Carter M,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2022) Stanford University School of Medicine,
            Sonnenburg Lab, Department of Microbiology and Immunology Stanford
            University, School of Medicine Fairchild Science Building, Rm D307a
            299 Campus Drive Stanford, CA 94305-5124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKVFL000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAKVFL000000000.  This version
            of the project (01) has the accession number NZ_CAKVFL010000000,
            and consists of sequences CAKVFL010000001-CAKVFL010000002.
            uncultured Methanobrevibacter sp. MAG assembled and binned from
            ERR7738626.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934746735.1-RS_2024_07_06
            Annotation Date                   :: 07/06/2024 13:26:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,753
            CDSs (total)                      :: 1,713
            Genes (coding)                    :: 1,696
            CDSs (with protein)               :: 1,696
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 8 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 5 of 17
            Pseudo Genes (multiple problems)  :: 4 of 17
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795814
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K
                     77_MERGED__Hadza_MoBio_hadza-E-H_E_17_1727.272"
                     /isolation_source="human feces"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKVFL010000001-CAKVFL010000002
WGS_SCAFLD  NZ_CAKVFL010000001-NZ_CAKVFL010000002
//
LOCUS       NZ_CAKVKZ010000000   1639366 bp    DNA     linear   ENV 07-JUL-2024
DEFINITION  MAG: uncultured Methanosphaera sp. isolate
            REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_Ph
            eChl_Fiber-Hadza-Nepal_I_12_1518.106, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAKVKZ000000000
VERSION     NZ_CAKVKZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13472943
            Sequence Read Archive: ERR7738600
            Assembly: GCF_934755265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanosphaera sp. (human gut metagenome)
  ORGANISM  uncultured Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera; environmental samples.
REFERENCE   1  (bases 1 to 1639366)
  AUTHORS   Sonnenburg L,J., Merrill D,B., Olm R,M. and Carter M,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2022) Stanford University School of Medicine,
            Sonnenburg Lab, Department of Microbiology and Immunology Stanford
            University, School of Medicine Fairchild Science Building, Rm D307a
            299 Campus Drive Stanford, CA 94305-5124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKVKZ000000000.1.
            The uncultured Methanosphaera sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAKVKZ000000000.  This version
            of the project (01) has the accession number NZ_CAKVKZ010000000,
            and consists of sequences CAKVKZ010000001-CAKVKZ010000035.
            uncultured Methanosphaera sp. MAG assembled and binned from
            ERR7738600.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934755265.1-RS_2024_07_07
            Annotation Date                   :: 07/07/2024 04:08:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,507
            Genes (coding)                    :: 1,496
            CDSs (with protein)               :: 1,496
            Genes (RNA)                       :: 39
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 9 of 11
            Pseudo Genes (internal stop)      :: 0 of 11
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639366
                     /organism="uncultured Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K
                     77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_I_12_1518.106"
                     /isolation_source="human feces"
                     /db_xref="taxon:262501"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKVKZ010000001-CAKVKZ010000035
WGS_SCAFLD  NZ_CAKVKZ010000001-NZ_CAKVKZ010000035
//
LOCUS       NZ_CAKVFU010000000   1652971 bp    DNA     linear   ENV 07-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_Mo
            Bio_Fiber-Hadza-Nepal_F_7_RAU0027AZ.190, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAKVFU000000000
VERSION     NZ_CAKVFU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13500370
            Sequence Read Archive: ERR7738582
            Assembly: GCF_934746955.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (human gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1652971)
  AUTHORS   Sonnenburg L,J., Merrill D,B., Olm R,M. and Carter M,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2022) Stanford University School of Medicine,
            Sonnenburg Lab, Department of Microbiology and Immunology Stanford
            University, School of Medicine Fairchild Science Building, Rm D307a
            299 Campus Drive Stanford, CA 94305-5124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKVFU000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAKVFU000000000.  This version
            of the project (01) has the accession number NZ_CAKVFU010000000,
            and consists of sequences CAKVFU010000001-CAKVFU010000076.
            uncultured Methanobrevibacter sp. MAG assembled and binned from
            ERR7738582.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934746955.1-RS_2024_07_07
            Annotation Date                   :: 07/07/2024 04:10:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,682
            CDSs (total)                      :: 1,643
            Genes (coding)                    :: 1,603
            CDSs (with protein)               :: 1,603
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 6 of 40
            Pseudo Genes (incomplete)         :: 32 of 40
            Pseudo Genes (internal stop)      :: 8 of 40
            Pseudo Genes (multiple problems)  :: 6 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652971
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K
                     77_MERGED__Nepal_MoBio_Fiber-Hadza-
                     Nepal_F_7_RAU0027AZ.190"
                     /isolation_source="human feces"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKVFU010000001-CAKVFU010000076
WGS_SCAFLD  NZ_CAKVFU010000001-NZ_CAKVFU010000076
//
LOCUS       NZ_CAKVFD010000000   1748243 bp    DNA     linear   ENV 07-JUL-2024
DEFINITION  MAG: uncultured Methanosphaera sp. isolate
            REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_Ph
            eChl_Fiber-Hadza-Nepal_A_2_1112.310, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAKVFD000000000
VERSION     NZ_CAKVFD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13475686
            Sequence Read Archive: ERR7746411
            Assembly: GCF_934746405.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanosphaera sp. (human gut metagenome)
  ORGANISM  uncultured Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera; environmental samples.
REFERENCE   1  (bases 1 to 1748243)
  AUTHORS   Sonnenburg L,J., Merrill D,B., Olm R,M. and Carter M,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2022) Stanford University School of Medicine,
            Sonnenburg Lab, Department of Microbiology and Immunology Stanford
            University, School of Medicine Fairchild Science Building, Rm D307a
            299 Campus Drive Stanford, CA 94305-5124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKVFD000000000.1.
            The uncultured Methanosphaera sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAKVFD000000000.  This version
            of the project (01) has the accession number NZ_CAKVFD010000000,
            and consists of sequences CAKVFD010000001-CAKVFD010000044.
            uncultured Methanosphaera sp. MAG assembled and binned from
            ERR7746411.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934746405.1-RS_2024_07_07
            Annotation Date                   :: 07/07/2024 13:31:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,624
            CDSs (total)                      :: 1,585
            Genes (coding)                    :: 1,572
            CDSs (with protein)               :: 1,572
            Genes (RNA)                       :: 39
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 2 of 13
            Pseudo Genes (incomplete)         :: 11 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748243
                     /organism="uncultured Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K
                     77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_A_2_1112.310"
                     /isolation_source="human feces"
                     /db_xref="taxon:262501"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKVFD010000001-CAKVFD010000044
WGS_SCAFLD  NZ_CAKVFD010000001-NZ_CAKVFD010000044
//
LOCUS       NZ_CADCJB010000000   2161096 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG14697, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADCJB000000000
VERSION     NZ_CADCJB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6152836
            Assembly: GCF_902801725.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2161096)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADCJB000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADCJB000000000.  This version
            of the project (01) has the accession number NZ_CADCJB010000000,
            and consists of sequences CADCJB010000001-CADCJB010000083.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902801725.1-RS_2024_07_13
            Annotation Date                   :: 07/13/2024 05:08:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,050
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,979
            CDSs (with protein)               :: 1,979
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 11 of 37
            Pseudo Genes (incomplete)         :: 26 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 2 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161096
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG14697"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADCJB010000001-CADCJB010000083
WGS_SCAFLD  NZ_CADCJB010000001-NZ_CADCJB010000083
//
LOCUS       NZ_JAHDOC010000000   2646916 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Methanospirillum sp. isolate SL1-B37, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHDOC000000000
VERSION     NZ_JAHDOC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16056089
            Assembly: GCF_018435085.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanospirillum sp. (wastewater metagenome)
  ORGANISM  Methanospirillum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 2646916)
  AUTHORS   Ewens,S.D., Gomberg,A.F.S., Barnum,T.P., Borton,M.A., Carlson,H.K.,
            Wrighton,K.C. and Coates,J.D.
  TITLE     The diversity and evolution of microbial dissimilatory phosphite
            oxidation
  JOURNAL   Proc Natl Acad Sci U S A 118 (11) (2021)
   PUBMED   33688048
REFERENCE   2  (bases 1 to 2646916)
  AUTHORS   Ewens,S.D. and Coates,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2021) Plant and Microbial Biology, University of
            California, Berkeley, 111 Koshland Hall, Berkeley, CA 94702-3102,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHDOC000000000.1.
            The Methanospirillum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAHDOC000000000.  This version of the project
            (01) has the accession number NZ_JAHDOC010000000, and consists of
            sequences JAHDOC010000001-JAHDOC010000356.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2019
            Assembly Method        :: MEGAHIT v. V1.1.2
            Assembly Name          :: SL1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5.83348102x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018435085.1-RS_2024_07_13
            Annotation Date                   :: 07/13/2024 05:37:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,757
            CDSs (total)                      :: 2,706
            Genes (coding)                    :: 2,619
            CDSs (with protein)               :: 2,619
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 6 of 87
            Pseudo Genes (incomplete)         :: 82 of 87
            Pseudo Genes (internal stop)      :: 4 of 87
            Pseudo Genes (multiple problems)  :: 5 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646916
                     /organism="Methanospirillum sp."
                     /mol_type="genomic DNA"
                     /isolate="SL1-B37"
                     /isolation_source="wastewater sludge anaerobic digester
                     phosphite (DPO) enrichment"
                     /db_xref="taxon:45200"
                     /environmental_sample
                     /geo_loc_name="USA: San Leandro, CA"
                     /lat_lon="37.715755 N 122.193870 W"
                     /collection_date="2018-01-30"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JAHDOC010000001-JAHDOC010000356
WGS_SCAFLD  NZ_JAHDOC010000001-NZ_JAHDOC010000356
//
LOCUS       NZ_CAMOIM010000000   1682674 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: uncultured Methanosphaera sp. isolate
            SRR873602_bin.81_metaWRAP_v1.3_MAG, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAMOIM000000000
VERSION     NZ_CAMOIM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110745833
            Sequence Read Archive: SRR873602
            Assembly: GCF_946616125.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanosphaera sp. (sheep gut metagenome)
  ORGANISM  uncultured Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera; environmental samples.
REFERENCE   1  (bases 1 to 1682674)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMOIM000000000.1.
            The uncultured Methanosphaera sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAMOIM000000000.  This version
            of the project (01) has the accession number NZ_CAMOIM010000000,
            and consists of sequences CAMOIM010000001-CAMOIM010000018.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP104317.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR873602.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_946616125.1-RS_2024_07_13
            Annotation Date                   :: 07/13/2024 06:15:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,588
            CDSs (total)                      :: 1,548
            Genes (coding)                    :: 1,542
            CDSs (with protein)               :: 1,542
            Genes (RNA)                       :: 40
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 6 of 6
            Pseudo Genes (internal stop)      :: 0 of 6
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682674
                     /organism="uncultured Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR873602_bin.81_metaWRAP_v1.3_MAG"
                     /isolation_source="sheep gut metagenome"
                     /db_xref="taxon:262501"
                     /environmental_sample
                     /metagenome_source="sheep gut metagenome"
                     /metagenomic
WGS         CAMOIM010000001-CAMOIM010000018
WGS_SCAFLD  NZ_CAMOIM010000001-NZ_CAMOIM010000018
//
LOCUS       NZ_JALTXJ010000000   2047406 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate S141_metabat1_scaf2bin.085, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALTXJ000000000
VERSION     NZ_JALTXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27359028
            Assembly: GCF_027046765.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2047406)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047406)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALTXJ000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALTXJ000000000.  This version of the project
            (01) has the accession number NZ_JALTXJ010000000, and consists of
            sequences JALTXJ010000001-JALTXJ010000140.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 32.07x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027046765.1-RS_2024_07_13
            Annotation Date                   :: 07/13/2024 06:25:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,377
            CDSs (total)                      :: 2,328
            Genes (coding)                    :: 2,272
            CDSs (with protein)               :: 2,272
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 1 of 56
            Pseudo Genes (incomplete)         :: 56 of 56
            Pseudo Genes (internal stop)      :: 0 of 56
            Pseudo Genes (multiple problems)  :: 1 of 56
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047406
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S141_metabat1_scaf2bin.085"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Brothers volcano"
                     /collection_date="2018"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALTXJ010000001-JALTXJ010000140
WGS_SCAFLD  NZ_JALTXJ010000001-NZ_JALTXJ010000140
//
LOCUS       NZ_JAQUXQ010000000   2574816 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate STD2_217, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQUXQ000000000
VERSION     NZ_JAQUXQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32734546
            Assembly: GCF_028692305.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (landfill metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2574816)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2574816)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQUXQ000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQUXQ000000000.  This version of the project
            (01) has the accession number NZ_JAQUXQ010000000, and consists of
            sequences JAQUXQ010000001-JAQUXQ010000082.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 64.71x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028692305.1-RS_2024_07_13
            Annotation Date                   :: 07/13/2024 06:52:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,613
            Genes (coding)                    :: 2,574
            CDSs (with protein)               :: 2,574
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 3 of 39
            Pseudo Genes (incomplete)         :: 34 of 39
            Pseudo Genes (internal stop)      :: 2 of 39
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574816
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="STD2_217"
                     /isolation_source="NEUS_D2 leachate from a leachate well
                     at an active municipal landfill in the North Eastern
                     United States"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQUXQ010000001-JAQUXQ010000082
WGS_SCAFLD  NZ_JAQUXQ010000001-NZ_JAQUXQ010000082
//
LOCUS       NZ_JAJRCG010000000   2674360 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Methanoregula sp. isolate OWC_0058, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJRCG000000000
VERSION     NZ_JAJRCG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23830057
            Assembly: GCF_028679125.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (wetland metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2674360)
  AUTHORS   Narrowe,A.B., Borton,M.A., Liu,P., Daly,R.A., Nikulkova,M.,
            Miller,C.S. and Wrighton,K.C.
  TITLE     Old Woman Creek methane-cycling MAG database
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2674360)
  AUTHORS   Narrowe,A.B., Borton,M.A., Liu,P., Daly,R.A., Nikulkova,M.,
            Miller,C.S. and Wrighton,K.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2021) Department of Soil and Crop Sciences,
            Colorado State University, 307 University Avenue, Fort Collins, CO
            80523, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJRCG000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAJRCG000000000.  This version of the project
            (01) has the accession number NZ_JAJRCG010000000, and consists of
            sequences JAJRCG010000001-JAJRCG010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028679125.1-RS_2024_07_13
            Annotation Date                   :: 07/13/2024 06:53:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,679
            CDSs (total)                      :: 2,633
            Genes (coding)                    :: 2,614
            CDSs (with protein)               :: 2,614
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 1 of 19
            Pseudo Genes (incomplete)         :: 12 of 19
            Pseudo Genes (internal stop)      :: 6 of 19
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2674360
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="OWC_0058"
                     /isolation_source="freshwater wetland soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA: Ohio, Old Woman Creek NERR"
                     /lat_lon="41.377788 N 82.510793 W"
                     /collection_date="2013-10"
                     /metagenome_source="wetland metagenome"
                     /metagenomic
WGS         JAJRCG010000001-JAJRCG010000033
WGS_SCAFLD  NZ_JAJRCG010000001-NZ_JAJRCG010000033
//
LOCUS       NZ_DAIEVP010000000   1669809 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Ferroplasma sp. isolate clean2957, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAIEVP000000000
VERSION     NZ_DAIEVP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28407162
            Sequence Read Archive: SRR13221994
            Assembly: GCF_027381685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ferroplasma sp. (mine drainage metagenome)
  ORGANISM  Ferroplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma.
REFERENCE   1  (bases 1 to 1669809)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669809)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUL-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIEVP000000000.1.
            The Ferroplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAIEVP000000000.  This version of the project
            (01) has the accession number NZ_DAIEVP010000000, and consists of
            sequences DAIEVP010000001-DAIEVP010000200.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027381685.1-RS_2024_07_13
            Annotation Date                   :: 07/13/2024 06:54:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,870
            CDSs (total)                      :: 1,824
            Genes (coding)                    :: 1,761
            CDSs (with protein)               :: 1,761
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 4 of 63
            Pseudo Genes (incomplete)         :: 59 of 63
            Pseudo Genes (internal stop)      :: 2 of 63
            Pseudo Genes (multiple problems)  :: 1 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669809
                     /organism="Ferroplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="clean2957"
                     /isolation_source="sediment"
                     /db_xref="taxon:2591003"
                     /environmental_sample
                     /geo_loc_name="China: Anhui, Maanshan"
                     /lat_lon="31.67721 N 118.627434 E"
                     /collection_date="2016-10-30"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAIEVP010000001-DAIEVP010000200
WGS_SCAFLD  NZ_DAIEVP010000001-NZ_DAIEVP010000200
//
LOCUS       NZ_JASGLW010000000   1550882 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Methanohalophilus sp. isolate DJKA121_NP-J24_bin.30, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JASGLW000000000
VERSION     NZ_JASGLW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33401115
            Assembly: GCF_030156785.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanohalophilus sp. (subsurface metagenome)
  ORGANISM  Methanohalophilus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1550882)
  AUTHORS   Amundson,K. and Wilkins,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2023) Soil and Crop Sciences, Colorado State
            University, 1170 Campus Delivery, Fort Collins, CO 80523, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASGLW000000000.1.
            The Methanohalophilus sp. whole genome shotgun (WGS) project has
            the project accession NZ_JASGLW000000000.  This version of the
            project (01) has the accession number NZ_JASGLW010000000, and
            consists of sequences JASGLW010000001-JASGLW010000019.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: idba-ud v. 1.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 6.973140438x
            Sequencing Technology  :: Illumnina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030156785.1-RS_2024_07_13
            Annotation Date                   :: 07/13/2024 06:52:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,665
            CDSs (total)                      :: 1,618
            Genes (coding)                    :: 1,582
            CDSs (with protein)               :: 1,582
            Genes (RNA)                       :: 47
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 4 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 19 of 36
            Pseudo Genes (multiple problems)  :: 5 of 36
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550882
                     /organism="Methanohalophilus sp."
                     /mol_type="genomic DNA"
                     /isolate="DJKA121_NP-J24_bin.30"
                     /isolation_source="produced fluids from hydraulically
                     fractured shales DJB-6 day 513"
                     /db_xref="taxon:1966352"
                     /environmental_sample
                     /geo_loc_name="USA: Colorado"
                     /lat_lon="40.411582 N 104.348363 W"
                     /collection_date="2020"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JASGLW010000001-JASGLW010000019
WGS_SCAFLD  NZ_JASGLW010000001-NZ_JASGLW010000019
//
LOCUS       NZ_CAJOKH010000000   1891568 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate Reindeer_1_mag_112, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAJOKH000000000
VERSION     NZ_CAJOKH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8030318
            Assembly: GCF_905235195.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1891568)
  AUTHORS   Vasoya,D., Smith,R., Warr,A., Glendinning,L. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2021) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJOKH000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAJOKH000000000.  This version
            of the project (01) has the accession number NZ_CAJOKH010000000,
            and consists of sequences CAJOKH010000001-CAJOKH010000107.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905235195.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 02:12:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,773
            CDSs (total)                      :: 1,736
            Genes (coding)                    :: 1,676
            CDSs (with protein)               :: 1,676
            Genes (RNA)                       :: 37
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 40 of 60
            Pseudo Genes (incomplete)         :: 29 of 60
            Pseudo Genes (internal stop)      :: 12 of 60
            Pseudo Genes (multiple problems)  :: 16 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891568
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="Reindeer_1_mag_112"
                     /isolation_source="metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         CAJOKH010000001-CAJOKH010000107
WGS_SCAFLD  NZ_CAJOKH010000001-NZ_CAJOKH010000107
//
LOCUS       NZ_JACDNT010000000   2039628 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Archaeoglobus sp. isolate GB_MAG2_100, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDNT000000000
VERSION     NZ_JACDNT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15049707
            Assembly: GCF_017656475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Archaeoglobus sp. (marine sediment metagenome)
  ORGANISM  Archaeoglobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi;
            Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
REFERENCE   1  (bases 1 to 2039628)
  AUTHORS   Perez Castro,S. and Ruff,S.E.
  TITLE     Heterotrophic thermophiles and thermospores with the potential for
            polymeric C degradation in Guaymas Basin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2039628)
  AUTHORS   Perez Castro,S. and Ruff,S.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2020) Ruff Lab, Marine Biological Laboratory, 7
            MBL Street, Woods Hole, MA 02543, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDNT000000000.1.
            The Archaeoglobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JACDNT000000000.  This version of the project
            (01) has the accession number NZ_JACDNT010000000, and consists of
            sequences JACDNT010000001-JACDNT010000092.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 24-JAN-2020
            Assembly Method        :: SPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 282x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017656475.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 02:48:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,404
            CDSs (total)                      :: 2,357
            Genes (coding)                    :: 2,330
            CDSs (with protein)               :: 2,330
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 9 of 27
            Pseudo Genes (incomplete)         :: 21 of 27
            Pseudo Genes (internal stop)      :: 3 of 27
            Pseudo Genes (multiple problems)  :: 5 of 27
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039628
                     /organism="Archaeoglobus sp."
                     /mol_type="genomic DNA"
                     /isolate="GB_MAG2_100"
                     /isolation_source="deep sea sediment sample 4871-20 in
                     thermophilic enrichment culture"
                     /db_xref="taxon:1872626"
                     /environmental_sample
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /lat_lon="27.04618 N 111.38483 W"
                     /collection_date="2016-12-23"
                     /metagenome_source="marine sediment metagenome"
                     /metagenomic
WGS         JACDNT010000001-JACDNT010000092
WGS_SCAFLD  NZ_JACDNT010000001-NZ_JACDNT010000092
//
LOCUS       NZ_CAKVFS010000000   1778233 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_Mo
            Bio_hadza-A-D_L_21_1526.119, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAKVFS000000000
VERSION     NZ_CAKVFS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13516835
            Sequence Read Archive: ERR7738205
            Assembly: GCF_934746965.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (human gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1778233)
  AUTHORS   Sonnenburg L,J., Merrill D,B., Olm R,M. and Carter M,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2022) Stanford University School of Medicine,
            Sonnenburg Lab, Department of Microbiology and Immunology Stanford
            University, School of Medicine Fairchild Science Building, Rm D307a
            299 Campus Drive Stanford, CA 94305-5124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKVFS000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAKVFS000000000.  This version
            of the project (01) has the accession number NZ_CAKVFS010000000,
            and consists of sequences CAKVFS010000001-CAKVFS010000017.
            uncultured Methanobrevibacter sp. MAG assembled and binned from
            ERR7738205.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934746965.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 02:57:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,773
            CDSs (total)                      :: 1,737
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 9 of 16
            Pseudo Genes (incomplete)         :: 7 of 16
            Pseudo Genes (internal stop)      :: 7 of 16
            Pseudo Genes (multiple problems)  :: 6 of 16
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778233
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K
                     77_MERGED__Hadza_MoBio_hadza-A-D_L_21_1526.119"
                     /isolation_source="human feces"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKVFS010000001-CAKVFS010000017
WGS_SCAFLD  NZ_CAKVFS010000001-NZ_CAKVFS010000017
//
LOCUS       NZ_JACDNS010000000   2048078 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate GB_MAG1_027, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDNS000000000
VERSION     NZ_JACDNS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15049706
            Assembly: GCF_017656495.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (marine sediment metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2048078)
  AUTHORS   Perez Castro,S. and Ruff,S.E.
  TITLE     Heterotrophic thermophiles and thermospores with the potential for
            polymeric C degradation in Guaymas Basin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2048078)
  AUTHORS   Perez Castro,S. and Ruff,S.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2020) Ruff Lab, Marine Biological Laboratory, 7
            MBL Street, Woods Hole, MA 02543, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDNS000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JACDNS000000000.  This version of the project
            (01) has the accession number NZ_JACDNS010000000, and consists of
            sequences JACDNS010000001-JACDNS010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 24-JAN-2020
            Assembly Method        :: SPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017656495.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 02:07:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,271
            CDSs (total)                      :: 2,245
            Genes (coding)                    :: 2,236
            CDSs (with protein)               :: 2,236
            Genes (RNA)                       :: 26
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 5 of 9
            Pseudo Genes (incomplete)         :: 6 of 9
            Pseudo Genes (internal stop)      :: 1 of 9
            Pseudo Genes (multiple problems)  :: 2 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048078
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="GB_MAG1_027"
                     /isolation_source="deep sea sediment sample 4871-20 in
                     thermophilic enrichment culture"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /lat_lon="27.04618 N 111.38483 W"
                     /collection_date="2016-12-23"
                     /metagenome_source="marine sediment metagenome"
                     /metagenomic
WGS         JACDNS010000001-JACDNS010000025
WGS_SCAFLD  NZ_JACDNS010000001-NZ_JACDNS010000025
//
LOCUS       NZ_JAEELZ010000000   1856051 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Methanosphaera sp. isolate Tb.RUG.228, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEELZ000000000
VERSION     NZ_JAEELZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16243607
            Assembly: GCF_016282985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera sp. (gut metagenome)
  ORGANISM  Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1856051)
  AUTHORS   Gharechahi,J.
  TITLE     Metagenomic insights into the dynamic microbiomes with diversified
            adaptive functions to utilize high lignocellulosic forages by
            indigenous cattle
  JOURNAL   ISME J (2020) In press
REFERENCE   2  (bases 1 to 1856051)
  AUTHORS   Gharechahi,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2020) Human Genetics, Baqiyatallah University of
            Medical Sciences, Molasadra, Tehran 123456789, Iran
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEELZ000000000.1.
            The Methanosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAEELZ000000000.  This version of the project
            (01) has the accession number NZ_JAEELZ010000000, and consists of
            sequences JAEELZ010000001-JAEELZ010000151.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016282985.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 01:50:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,861
            CDSs (total)                      :: 1,811
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 2 of 32
            Pseudo Genes (incomplete)         :: 30 of 32
            Pseudo Genes (internal stop)      :: 0 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856051
                     /organism="Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="Tb.RUG.228"
                     /isolation_source="rumen"
                     /host="cattle"
                     /db_xref="taxon:2666342"
                     /environmental_sample
                     /geo_loc_name="Iran: Karaj"
                     /lat_lon="35.8400 N 50.9391 E"
                     /collection_date="2018-10"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAEELZ010000001-JAEELZ010000151
WGS_SCAFLD  NZ_JAEELZ010000001-NZ_JAEELZ010000151
//
LOCUS       NZ_JAFRJO010000000   1694684 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG2528, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFRJO000000000
VERSION     NZ_JAFRJO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16342995
            Assembly: GCF_017432245.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1694684)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1694684)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFRJO000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFRJO000000000.  This version of the
            project (01) has the accession number NZ_JAFRJO010000000, and
            consists of sequences JAFRJO010000001-JAFRJO010000104.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017432245.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 02:03:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,658
            CDSs (total)                      :: 1,618
            Genes (coding)                    :: 1,596
            CDSs (with protein)               :: 1,596
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 2 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 20 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694684
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG2528"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-12"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFRJO010000001-JAFRJO010000104
WGS_SCAFLD  NZ_JAFRJO010000001-NZ_JAFRJO010000104
//
LOCUS       NZ_CAJYDP010000000   2937859 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Methanoculleus sp. 10 isolate UFZ-1H3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJYDP000000000
VERSION     NZ_CAJYDP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA9542885
            Assembly: GCF_913757945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. 10 (metagenome)
  ORGANISM  Methanoculleus sp. 10
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2937859)
  AUTHORS   Popp,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-AUG-2021) HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH
            - UFZ., Environmental Microbiology, Permoserstr. 15, 04318 Leipzig,
            Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJYDP000000000.1.
            The Methanoculleus sp. 10 whole genome shotgun (WGS) project has
            the project accession NZ_CAJYDP000000000.  This version of the
            project (01) has the accession number NZ_CAJYDP010000000, and
            consists of sequences CAJYDP010000001-CAJYDP010000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_913757945.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 02:23:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,982
            CDSs (total)                      :: 2,928
            Genes (coding)                    :: 2,889
            CDSs (with protein)               :: 2,889
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 14 of 39
            Pseudo Genes (incomplete)         :: 28 of 39
            Pseudo Genes (internal stop)      :: 1 of 39
            Pseudo Genes (multiple problems)  :: 3 of 39
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2937859
                     /organism="Methanoculleus sp. 10"
                     /mol_type="genomic DNA"
                     /isolate="UFZ-1H3"
                     /isolation_source="Biogas reactor"
                     /db_xref="taxon:430615"
                     /environmental_sample
                     /metagenome_source="metagenome"
                     /metagenomic
WGS         CAJYDP010000001-CAJYDP010000027
WGS_SCAFLD  NZ_CAJYDP010000001-NZ_CAJYDP010000027
//
LOCUS       NZ_JAILWF010000000   1598099 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Nitrosarchaeum sp. isolate ECS24A1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAILWF000000000
VERSION     NZ_JAILWF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20425651
            Assembly: GCF_025699065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosarchaeum sp. (estuary metagenome)
  ORGANISM  Nitrosarchaeum sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosarchaeum.
REFERENCE   1  (bases 1 to 1598099)
  AUTHORS   Liu,L.
  TITLE     Genomes of ammonia-oxidizing archaea derived from marine sediments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1598099)
  AUTHORS   Liu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) School of Life Sciences and Biotechnology,
            Shanghai Jiao Tong University (SJTU), 800 Dongchuan RD. Minhang
            District, Shanghai 200240, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAILWF000000000.1.
            The Nitrosarchaeum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAILWF000000000.  This version of the project
            (01) has the accession number NZ_JAILWF010000000, and consists of
            sequences JAILWF010000001-JAILWF010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3624.43x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025699065.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 04:12:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,944
            CDSs (total)                      :: 1,895
            Genes (coding)                    :: 1,888
            CDSs (with protein)               :: 1,888
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 6 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598099
                     /organism="Nitrosarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="ECS24A1"
                     /isolation_source="enrichment culture inoculated with
                     surface estuarine sediment"
                     /db_xref="taxon:2026886"
                     /environmental_sample
                     /geo_loc_name="China: the East China Sea"
                     /lat_lon="30.7672 N 122.8300 E"
                     /collection_date="2021-05-07"
                     /metagenome_source="estuary metagenome"
                     /metagenomic
WGS         JAILWF010000001-JAILWF010000011
WGS_SCAFLD  NZ_JAILWF010000001-NZ_JAILWF010000011
//
LOCUS       NZ_JANIHG010000000   1662847 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Methanothrix sp. isolate LCB019-064, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANIHG000000000
VERSION     NZ_JANIHG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29855467
            Assembly: GCF_024518575.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (hot springs metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 1662847)
  AUTHORS   Lynes,M., Krukenberg,V., Jay,Z.J., Kohtz,A.J., Gobrogge,C.A.,
            Spietz,R.L. and Hatzenpichler,R.
  TITLE     Diversity and function of methyl-coenzyme M reductase-encoding
            archaea in Yellowstone hot springs revealed by metagenomics and
            mesocosm experiments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1662847)
  AUTHORS   Lynes,M., Krukenberg,V., Jay,Z.J., Kohtz,A.J., Gobrogge,C.A.,
            Spietz,R.L. and Hatzenpichler,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2022) Chemistry and Biochemistry, Montana State
            University, 103 Chemistry Building, Bozeman, MT 59717, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANIHG000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JANIHG000000000.  This version of the project
            (01) has the accession number NZ_JANIHG010000000, and consists of
            sequences JANIHG010000001-JANIHG010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 491.4x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024518575.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 04:14:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,676
            CDSs (total)                      :: 1,628
            Genes (coding)                    :: 1,615
            CDSs (with protein)               :: 1,615
            Genes (RNA)                       :: 48
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 13 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662847
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="LCB019-064"
                     /isolation_source="hot spring sediment"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park, WY"
                     /lat_lon="44.56765 N 110.80759 W"
                     /collection_date="2017-10-28"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JANIHG010000001-JANIHG010000072
WGS_SCAFLD  NZ_JANIHG010000001-NZ_JANIHG010000072
//
LOCUS       NZ_JALTCZ010000000   1781016 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate S013_metabat2_scaf2bin.060, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALTCZ000000000
VERSION     NZ_JALTCZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27358518
            Assembly: GCF_027008145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1781016)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781016)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALTCZ000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALTCZ000000000.  This version of the project
            (01) has the accession number NZ_JALTCZ010000000, and consists of
            sequences JALTCZ010000001-JALTCZ010000212.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.4x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027008145.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 04:19:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,181
            CDSs (total)                      :: 2,131
            Genes (coding)                    :: 2,023
            CDSs (with protein)               :: 2,023
            Genes (RNA)                       :: 50
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 17 of 108
            Pseudo Genes (incomplete)         :: 92 of 108
            Pseudo Genes (internal stop)      :: 7 of 108
            Pseudo Genes (multiple problems)  :: 7 of 108
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781016
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S013_metabat2_scaf2bin.060"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Brothers volcano"
                     /collection_date="2018"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALTCZ010000001-JALTCZ010000212
WGS_SCAFLD  NZ_JALTCZ010000001-NZ_JALTCZ010000212
//
LOCUS       NZ_JALTDA010000000   1707928 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate S013_metabat2_scaf2bin.062, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALTDA000000000
VERSION     NZ_JALTDA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27358519
            Assembly: GCF_027008105.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1707928)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707928)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALTDA000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALTDA000000000.  This version of the project
            (01) has the accession number NZ_JALTDA010000000, and consists of
            sequences JALTDA010000001-JALTDA010000067.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 270.27x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027008105.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 04:18:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,019
            CDSs (total)                      :: 1,966
            Genes (coding)                    :: 1,918
            CDSs (with protein)               :: 1,918
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 17 of 48
            Pseudo Genes (incomplete)         :: 33 of 48
            Pseudo Genes (internal stop)      :: 5 of 48
            Pseudo Genes (multiple problems)  :: 6 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707928
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S013_metabat2_scaf2bin.062"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Brothers volcano"
                     /collection_date="2018"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALTDA010000001-JALTDA010000067
WGS_SCAFLD  NZ_JALTDA010000001-NZ_JALTDA010000067
//
LOCUS       NZ_JALVAO010000000   1727937 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate 132-544_metabat2_scaf2bin.091, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALVAO000000000
VERSION     NZ_JALVAO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27359806
            Assembly: GCF_027011145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1727937)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727937)
  AUTHORS   Reysenbach,A.-L., Anantharaman,K., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALVAO000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALVAO000000000.  This version of the project
            (01) has the accession number NZ_JALVAO010000000, and consists of
            sequences JALVAO010000001-JALVAO010000070.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37.36x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027011145.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 04:18:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,031
            CDSs (total)                      :: 1,982
            Genes (coding)                    :: 1,946
            CDSs (with protein)               :: 1,946
            Genes (RNA)                       :: 49
            rRNAs                             :: 4, 1 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 6 of 36
            Pseudo Genes (incomplete)         :: 30 of 36
            Pseudo Genes (internal stop)      :: 3 of 36
            Pseudo Genes (multiple problems)  :: 3 of 36
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727937
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="132-544_metabat2_scaf2bin.091"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2005"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALVAO010000001-JALVAO010000070
WGS_SCAFLD  NZ_JALVAO010000001-NZ_JALVAO010000070
//
LOCUS       NZ_JALUYR010000000   1750369 bp    DNA     linear   ENV 14-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate 132-544_maxbin2_scaf2bin.015, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALUYR000000000
VERSION     NZ_JALUYR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27359757
            Assembly: GCF_027012695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1750369)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750369)
  AUTHORS   Reysenbach,A.-L., Anantharaman,K., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALUYR000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALUYR000000000.  This version of the project
            (01) has the accession number NZ_JALUYR010000000, and consists of
            sequences JALUYR010000001-JALUYR010000146.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 338.83x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027012695.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 04:23:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,032
            CDSs (total)                      :: 1,985
            Genes (coding)                    :: 1,935
            CDSs (with protein)               :: 1,935
            Genes (RNA)                       :: 47
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 6 of 50
            Pseudo Genes (incomplete)         :: 48 of 50
            Pseudo Genes (internal stop)      :: 3 of 50
            Pseudo Genes (multiple problems)  :: 6 of 50
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750369
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="132-544_maxbin2_scaf2bin.015"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2005"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALUYR010000001-JALUYR010000146
WGS_SCAFLD  NZ_JALUYR010000001-NZ_JALUYR010000146
//
LOCUS       NZ_JAQVMH010000000   2614907 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate STF1_129, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQVMH000000000
VERSION     NZ_JAQVMH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32737224
            Assembly: GCF_028703715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (landfill metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2614907)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2614907)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQVMH000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQVMH000000000.  This version of the project
            (01) has the accession number NZ_JAQVMH010000000, and consists of
            sequences JAQVMH010000001-JAQVMH010000079.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180.35x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028703715.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 05:00:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,678
            CDSs (total)                      :: 2,624
            Genes (coding)                    :: 2,580
            CDSs (with protein)               :: 2,580
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 3 of 44
            Pseudo Genes (incomplete)         :: 37 of 44
            Pseudo Genes (internal stop)      :: 4 of 44
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614907
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="STF1_129"
                     /isolation_source="NEUS_F1 leachate from a leachate well
                     at an active municipal landfill in the North Eastern
                     United States"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQVMH010000001-JAQVMH010000079
WGS_SCAFLD  NZ_JAQVMH010000001-NZ_JAQVMH010000079
//
LOCUS       NZ_JAQTQD010000000   2667532 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanoregula sp. isolate STB_131, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQTQD000000000
VERSION     NZ_JAQTQD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32731847
            Assembly: GCF_028712425.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (landfill metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2667532)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2667532)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQTQD000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQTQD000000000.  This version of the project
            (01) has the accession number NZ_JAQTQD010000000, and consists of
            sequences JAQTQD010000001-JAQTQD010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4.88x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028712425.1-RS_2024_07_14
            Annotation Date                   :: 07/14/2024 05:06:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,796
            CDSs (total)                      :: 2,746
            Genes (coding)                    :: 2,715
            CDSs (with protein)               :: 2,715
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 2 of 31
            Pseudo Genes (incomplete)         :: 28 of 31
            Pseudo Genes (internal stop)      :: 3 of 31
            Pseudo Genes (multiple problems)  :: 2 of 31
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2667532
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="STB_131"
                     /isolation_source="NEUS_B leachate from a leachate well at
                     an active municipal landfill in the North Eastern United
                     States"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQTQD010000001-JAQTQD010000056
WGS_SCAFLD  NZ_JAQTQD010000001-NZ_JAQTQD010000056
//
LOCUS       NZ_CADCEP010000000   2580004 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG14569, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADCEP000000000
VERSION     NZ_CADCEP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6152708
            Assembly: GCF_902800455.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2580004)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADCEP000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADCEP000000000.  This version
            of the project (01) has the accession number NZ_CADCEP010000000,
            and consists of sequences CADCEP010000001-CADCEP010000092.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902800455.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 01:57:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,371
            CDSs (total)                      :: 2,335
            Genes (coding)                    :: 2,296
            CDSs (with protein)               :: 2,296
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 9 of 39
            Pseudo Genes (incomplete)         :: 31 of 39
            Pseudo Genes (internal stop)      :: 3 of 39
            Pseudo Genes (multiple problems)  :: 4 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580004
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG14569"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADCEP010000001-CADCEP010000092
WGS_SCAFLD  NZ_CADCEP010000001-NZ_CADCEP010000092
//
LOCUS       NZ_SUTI01000000      1866258 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate SIG16, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SUTI00000000
VERSION     NZ_SUTI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11294301
            Assembly: GCF_015062985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (feces metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1866258)
  AUTHORS   Peng,X.
  TITLE     Evolution of Biomass-Degrading Anaerobic Consortia Revealed by
            Metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1866258)
  AUTHORS   Peng,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2019) Chemical Engineering, University of
            California, Santa Barbara, 3357 Engineering II, University of
            California, Santa Barbara, CA 93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SUTI00000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_SUTI00000000.  This version of the project
            (01) has the accession number NZ_SUTI01000000, and consists of
            sequences SUTI01000001-SUTI01000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31.823x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015062985.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 02:18:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,963
            CDSs (total)                      :: 1,945
            Genes (coding)                    :: 1,920
            CDSs (with protein)               :: 1,920
            Genes (RNA)                       :: 18
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 0 of 25
            Pseudo Genes (incomplete)         :: 25 of 25
            Pseudo Genes (internal stop)      :: 0 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866258
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SIG16"
                     /isolation_source="feces"
                     /host="San Clemente Island Goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="USA: Santa Barbara Zoo"
                     /lat_lon="34.4149 N 119.841 W"
                     /collection_date="2016-06-16"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         SUTI01000001-SUTI01000044
WGS_SCAFLD  NZ_SUTI01000001-NZ_SUTI01000044
//
LOCUS       NZ_JALEKL010000000   1608130 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanosphaera sp. isolate SUG86, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALEKL000000000
VERSION     NZ_JALEKL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26525310
            Assembly: GCF_022768985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera sp. (pig gut metagenome)
  ORGANISM  Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1608130)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Metagenome-assembled genomes from swine fecal metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1608130)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2022) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALEKL000000000.1.
            The Methanosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALEKL000000000.  This version of the project
            (01) has the accession number NZ_JALEKL010000000, and consists of
            sequences JALEKL010000001-JALEKL010000015.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2021
            Assembly Method        :: MEGAHIT v. v. 1.29.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022768985.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 03:28:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,475
            CDSs (total)                      :: 1,428
            Genes (coding)                    :: 1,420
            CDSs (with protein)               :: 1,420
            Genes (RNA)                       :: 47
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 1 of 8
            Pseudo Genes (incomplete)         :: 7 of 8
            Pseudo Genes (internal stop)      :: 0 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608130
                     /organism="Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="SUG86"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:2666342"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2019"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JALEKL010000001-JALEKL010000015
WGS_SCAFLD  NZ_JALEKL010000001-NZ_JALEKL010000015
//
LOCUS       NZ_JALOCH010000000   2847625 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanoregula sp. isolate SO_2017_LW4 bin 75, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JALOCH000000000
VERSION     NZ_JALOCH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27301932
            Assembly: GCF_023227875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (landfill metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2847625)
  AUTHORS   Hug,L.A. and George,N.A.
  TITLE     Virus-host interactions in a municipal landfill include
            non-specific viruses, hyper-targeted viral populations, and
            interviral conflicts
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2847625)
  AUTHORS   Hug,L.A. and George,N.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALOCH000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALOCH000000000.  This version of the project
            (01) has the accession number NZ_JALOCH010000000, and consists of
            sequences JALOCH010000001-JALOCH010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAY-2020
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75.5189x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023227875.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 03:39:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,959
            CDSs (total)                      :: 2,913
            Genes (coding)                    :: 2,897
            CDSs (with protein)               :: 2,897
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 2 of 16
            Pseudo Genes (incomplete)         :: 12 of 16
            Pseudo Genes (internal stop)      :: 3 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847625
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SO_2017_LW4 bin 75"
                     /isolation_source="leachate from a leachate well at an
                     active municipal landfill in Southern Ontario"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Canada: Waterloo"
                     /lat_lon="43.44 N 80.58 W"
                     /collection_date="2017-10"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JALOCH010000001-JALOCH010000026
WGS_SCAFLD  NZ_JALOCH010000001-NZ_JALOCH010000026
//
LOCUS       NZ_JAFWQL010000000   2103848 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG5977, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFWQL000000000
VERSION     NZ_JAFWQL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16346444
            Assembly: GCF_017545145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2103848)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2103848)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFWQL000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFWQL000000000.  This version of the
            project (01) has the accession number NZ_JAFWQL010000000, and
            consists of sequences JAFWQL010000001-JAFWQL010000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017545145.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 02:38:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,151
            CDSs (total)                      :: 2,104
            Genes (coding)                    :: 2,087
            CDSs (with protein)               :: 2,087
            Genes (RNA)                       :: 47
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 1 of 17
            Pseudo Genes (incomplete)         :: 15 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2103848
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG5977"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="sheep"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFWQL010000001-JAFWQL010000037
WGS_SCAFLD  NZ_JAFWQL010000001-NZ_JAFWQL010000037
//
LOCUS       NZ_JAFQQZ010000000   1840861 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG2071, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFQQZ000000000
VERSION     NZ_JAFQQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16342538
            Assembly: GCF_017410345.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1840861)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1840861)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFQQZ000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFQQZ000000000.  This version of the
            project (01) has the accession number NZ_JAFQQZ010000000, and
            consists of sequences JAFQQZ010000001-JAFQQZ010000063.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017410345.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 02:41:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,746
            CDSs (total)                      :: 1,706
            Genes (coding)                    :: 1,698
            CDSs (with protein)               :: 1,698
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 2 of 8
            Pseudo Genes (incomplete)         :: 6 of 8
            Pseudo Genes (internal stop)      :: 0 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840861
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG2071"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-12"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFQQZ010000001-JAFQQZ010000063
WGS_SCAFLD  NZ_JAFQQZ010000001-NZ_JAFQQZ010000063
//
LOCUS       NZ_JAGAXX010000000   2025603 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG8874, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGAXX000000000
VERSION     NZ_JAGAXX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16349376
            Assembly: GCF_017940815.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2025603)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2025603)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGAXX000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAGAXX000000000.  This version of the
            project (01) has the accession number NZ_JAGAXX010000000, and
            consists of sequences JAGAXX010000001-JAGAXX010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017940815.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 02:47:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,071
            CDSs (total)                      :: 2,033
            Genes (coding)                    :: 2,016
            CDSs (with protein)               :: 2,016
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 1 of 17
            Pseudo Genes (incomplete)         :: 16 of 17
            Pseudo Genes (internal stop)      :: 0 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025603
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG8874"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="water deer"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-12-27"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAGAXX010000001-JAGAXX010000088
WGS_SCAFLD  NZ_JAGAXX010000001-NZ_JAGAXX010000088
//
LOCUS       NZ_JAGGYN010000000   1675522 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Palaeococcus sp. (in: euryarchaeotes) isolate AUK179, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAGGYN000000000
VERSION     NZ_JAGGYN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18353675
            Assembly: GCF_021162525.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Palaeococcus sp. (in: euryarchaeotes) (hydrothermal vent
            metagenome)
  ORGANISM  Palaeococcus sp. (in: euryarchaeotes)
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Palaeococcus.
REFERENCE   1  (bases 1 to 1675522)
  AUTHORS   Speth,D.R., Yu,F.B., Connon,S.A., Lim,S., Magyar,J.S., Pena,M.E.,
            Quake,S.R. and Orphan,V.J.
  TITLE     Microbial community of recently discovered Auka vent field sheds
            light on vent biogeography and evolutionary history of thermophily
  JOURNAL   bioRxiv (2022) In press
  REMARK    DOI: 10.1101/2021.08.02.454472
REFERENCE   2  (bases 1 to 1675522)
  AUTHORS   Speth,D.R. and Orphan,V.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Geology and Planetary Sciences, California
            Institute of Technology, 1200 E California Blvd, MC100-23,
            Pasadena, CA 91125, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGYN000000000.1.
            The Palaeococcus sp. (in: euryarchaeotes) whole genome shotgun
            (WGS) project has the project accession NZ_JAGGYN000000000.  This
            version of the project (01) has the accession number
            NZ_JAGGYN010000000, and consists of sequences
            JAGGYN010000001-JAGGYN010000180.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.77x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021162525.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 03:22:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,978
            CDSs (total)                      :: 1,932
            Genes (coding)                    :: 1,848
            CDSs (with protein)               :: 1,848
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 14 of 84
            Pseudo Genes (incomplete)         :: 71 of 84
            Pseudo Genes (internal stop)      :: 4 of 84
            Pseudo Genes (multiple problems)  :: 5 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675522
                     /organism="Palaeococcus sp. (in: euryarchaeotes)"
                     /mol_type="genomic DNA"
                     /isolate="AUK179"
                     /isolation_source="marine hydrothermal sediment"
                     /db_xref="taxon:2820298"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Mexico, Pescadero Basin"
                     /lat_lon="23.957043 N 108.862273 W"
                     /collection_date="2015-04-18"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JAGGYN010000001-JAGGYN010000180
WGS_SCAFLD  NZ_JAGGYN010000001-NZ_JAGGYN010000180
//
LOCUS       NZ_JAMOSC010000000   1702712 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate 4561-384_metabat1_scaf2bin.008, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAMOSC000000000
VERSION     NZ_JAMOSC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27358166
            Assembly: GCF_027063285.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1702712)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702712)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMOSC000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAMOSC000000000.  This version of the project
            (01) has the accession number NZ_JAMOSC010000000, and consists of
            sequences JAMOSC010000001-JAMOSC010000278.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.76x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027063285.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 04:27:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,149
            CDSs (total)                      :: 2,104
            Genes (coding)                    :: 1,981
            CDSs (with protein)               :: 1,981
            Genes (RNA)                       :: 45
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 0 of 123
            Pseudo Genes (incomplete)         :: 121 of 123
            Pseudo Genes (internal stop)      :: 3 of 123
            Pseudo Genes (multiple problems)  :: 1 of 123
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702712
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="4561-384_metabat1_scaf2bin.008"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Gulf of California, Guaymas
                     Basin"
                     /collection_date="2009"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JAMOSC010000001-JAMOSC010000278
WGS_SCAFLD  NZ_JAMOSC010000001-NZ_JAMOSC010000278
//
LOCUS       NZ_JAOULD010000000   1655185 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate 8_1_Jan_SF_Bin66, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAOULD000000000
VERSION     NZ_JAOULD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30443103
            Assembly: GCF_029882185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (estuary metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1655185)
  AUTHORS   Langwig,M.V., De Anda,V., Sneed,S.L., Seitz,K.W., Rasmussen,A.,
            Anantharaman,K., Francis,C. and Baker,B.J.
  TITLE     Spatiotemporal shifts in microbial biogeochemical cycling in San
            Francisco Bay
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1655185)
  AUTHORS   Langwig,M.V., De Anda,V., Sneed,S.L., Seitz,K.W., Rasmussen,A.,
            Anantharaman,K., Francis,C. and Baker,B.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Marine Science, Integrative Biology,
            University of Texas - Austin, 2415 Speedway, Austin, TX 78712, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOULD000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAOULD000000000.  This version of the project
            (01) has the accession number NZ_JAOULD010000000, and consists of
            sequences JAOULD010000001-JAOULD010000102.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.570111800409x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029882185.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 05:06:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,114
            CDSs (total)                      :: 2,064
            Genes (coding)                    :: 2,015
            CDSs (with protein)               :: 2,015
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 3 of 49
            Pseudo Genes (incomplete)         :: 43 of 49
            Pseudo Genes (internal stop)      :: 5 of 49
            Pseudo Genes (multiple problems)  :: 2 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655185
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="8_1_Jan_SF_Bin66"
                     /isolation_source="Estuarine surface sediment"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="USA: San Francisco, California"
                     /lat_lon="38.030000 N 122.151667 W"
                     /collection_date="2012-01-01"
                     /metagenome_source="estuary metagenome"
                     /metagenomic
WGS         JAOULD010000001-JAOULD010000102
WGS_SCAFLD  NZ_JAOULD010000001-NZ_JAOULD010000102
//
LOCUS       NZ_JAQTZI010000000   2435409 bp    DNA     linear   ENV 15-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate STC_57, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQTZI000000000
VERSION     NZ_JAQTZI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32733674
            Assembly: GCF_028687835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (landfill metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2435409)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2435409)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQTZI000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQTZI000000000.  This version of the project
            (01) has the accession number NZ_JAQTZI010000000, and consists of
            sequences JAQTZI010000001-JAQTZI010000270.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3.22x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028687835.1-RS_2024_07_15
            Annotation Date                   :: 07/15/2024 05:05:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,679
            CDSs (total)                      :: 2,633
            Genes (coding)                    :: 2,533
            CDSs (with protein)               :: 2,533
            Genes (RNA)                       :: 46
            tRNAs                             :: 45
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 5 of 100
            Pseudo Genes (incomplete)         :: 89 of 100
            Pseudo Genes (internal stop)      :: 6 of 100
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435409
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="STC_57"
                     /isolation_source="NEUS_C leachate from a leachate well at
                     an active municipal landfill in the North Eastern United
                     States"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQTZI010000001-JAQTZI010000270
WGS_SCAFLD  NZ_JAQTZI010000001-NZ_JAQTZI010000270
//
LOCUS       NZ_JAFWSP010000000   1964947 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG6033, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFWSP000000000
VERSION     NZ_JAFWSP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16346504
            Assembly: GCF_017519255.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1964947)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1964947)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFWSP000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFWSP000000000.  This version of the
            project (01) has the accession number NZ_JAFWSP010000000, and
            consists of sequences JAFWSP010000001-JAFWSP010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017519255.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 02:38:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,002
            CDSs (total)                      :: 1,960
            Genes (coding)                    :: 1,951
            CDSs (with protein)               :: 1,951
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 8 of 9
            Pseudo Genes (internal stop)      :: 1 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964947
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG6033"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="sheep"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFWSP010000001-JAFWSP010000024
WGS_SCAFLD  NZ_JAFWSP010000001-NZ_JAFWSP010000024
//
LOCUS       NZ_CAMBZG010000000   1700550 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR17382101_bin.31_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMBZG000000000
VERSION     NZ_CAMBZG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110403143
            Sequence Read Archive: SRR17382101
            Assembly: GCF_945872535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (pig gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1700550)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMBZG000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAMBZG000000000.  This version
            of the project (01) has the accession number NZ_CAMBZG010000000,
            and consists of sequences CAMBZG010000001-CAMBZG010000151.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137783.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR17382101.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_945872535.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 03:21:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,940
            CDSs (total)                      :: 1,907
            Genes (coding)                    :: 1,854
            CDSs (with protein)               :: 1,854
            Genes (RNA)                       :: 33
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 7 of 53
            Pseudo Genes (incomplete)         :: 44 of 53
            Pseudo Genes (internal stop)      :: 5 of 53
            Pseudo Genes (multiple problems)  :: 2 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700550
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR17382101_bin.31_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMBZG010000001-CAMBZG010000151
WGS_SCAFLD  NZ_CAMBZG010000001-NZ_CAMBZG010000151
//
LOCUS       NZ_JAJGBJ010000000   2506600 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate NL_2.6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJGBJ000000000
VERSION     NZ_JAJGBJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22543507
            Assembly: GCF_020697455.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (coal metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2506600)
  AUTHORS   Li,Y.
  TITLE     Insights into the ecological roles of assembling genomes for
            stimulated methanogenic archaea Methanoculleus in coal seams
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2506600)
  AUTHORS   Li,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2021) State Key Laboratory of Mining Response and
            Disaster Prevention and Control in Deep Coal Mines, Anhui
            University of Science & Technology, Taifeng Road, Huainan, Anhui
            232001, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJGBJ000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAJGBJ000000000.  This version of the project
            (01) has the accession number NZ_JAJGBJ010000000, and consists of
            sequences JAJGBJ010000001-JAJGBJ010000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: FEB-2021
            Assembly Method        :: Metahit v. 1.2.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 97.71x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020697455.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 03:03:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,562
            CDSs (total)                      :: 2,509
            Genes (coding)                    :: 2,497
            CDSs (with protein)               :: 2,497
            Genes (RNA)                       :: 53
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 3 of 12
            Pseudo Genes (incomplete)         :: 10 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            Pseudo Genes (multiple problems)  :: 1 of 12
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506600
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="NL_2.6"
                     /isolation_source="coal samples cultured in anaerobic
                     conditions in minimal salts plus yeast media"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="China: Huainan"
                     /lat_lon="32.77 N 116.48 E"
                     /collection_date="2019-05-23"
                     /metagenome_source="coal metagenome"
                     /metagenomic
WGS         JAJGBJ010000001-JAJGBJ010000016
WGS_SCAFLD  NZ_JAJGBJ010000001-NZ_JAJGBJ010000016
//
LOCUS       NZ_JAILWA010000000   1649374 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate ECS22A1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAILWA000000000
VERSION     NZ_JAILWA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20425646
            Assembly: GCF_025699255.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (estuary metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1649374)
  AUTHORS   Liu,L.
  TITLE     Genomes of ammonia-oxidizing archaea derived from marine sediments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1649374)
  AUTHORS   Liu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) School of Life Sciences and Biotechnology,
            Shanghai Jiao Tong University (SJTU), 800 Dongchuan RD. Minhang
            District, Shanghai 200240, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAILWA000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAILWA000000000.  This version of the project
            (01) has the accession number NZ_JAILWA010000000, and consists of
            sequences JAILWA010000001-JAILWA010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4035.74x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025699255.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 03:33:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,025
            CDSs (total)                      :: 1,977
            Genes (coding)                    :: 1,964
            CDSs (with protein)               :: 1,964
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 12 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649374
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="ECS22A1"
                     /isolation_source="enrichment culture inoculated with
                     surface estuarine sediment"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="China: the East China Sea"
                     /lat_lon="30.9057 N 122.3792 E"
                     /collection_date="2021-05-07"
                     /metagenome_source="estuary metagenome"
                     /metagenomic
WGS         JAILWA010000001-JAILWA010000020
WGS_SCAFLD  NZ_JAILWA010000001-NZ_JAILWA010000020
//
LOCUS       NZ_JACCLX010000000   1468100 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: Methanocaldococcus sp. isolate T11_73, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACCLX000000000
VERSION     NZ_JACCLX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15465779
            Assembly: GCF_024490875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocaldococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Methanocaldococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanocaldococcaceae;
            Methanocaldococcus.
REFERENCE   1  (bases 1 to 1468100)
  AUTHORS   L'Haridon,S., Goulaouic,S., St John,E., Fouteau,S. and
            Reysenbach,A.L.
  TITLE     Methanocaldococcus lauensis sp. nov., a novel deep-sea hydrothermal
            vent hyperthermophilic methanogen
  JOURNAL   Int J Syst Evol Microbiol 73 (1) (2023)
   PUBMED   36748433
REFERENCE   2  (bases 1 to 1468100)
  AUTHORS   St. John,E. and Reysenbach,A.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2021) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACCLX000000000.1.
            The Methanocaldococcus sp. whole genome shotgun (WGS) project has
            the project accession NZ_JACCLX000000000.  This version of the
            project (01) has the accession number NZ_JACCLX010000000, and
            consists of sequences JACCLX010000001-JACCLX010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.1-2-g02102e1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 132.9x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024490875.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 03:39:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,617
            CDSs (total)                      :: 1,575
            Genes (coding)                    :: 1,516
            CDSs (with protein)               :: 1,516
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 2 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 11 of 59
            Pseudo Genes (incomplete)         :: 48 of 59
            Pseudo Genes (internal stop)      :: 2 of 59
            Pseudo Genes (multiple problems)  :: 2 of 59
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1468100
                     /organism="Methanocaldococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="T11_73"
                     /isolation_source="hydrothermal vent deposit"
                     /db_xref="taxon:2152917"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="21.9894 S 176.5683 W"
                     /collection_date="2015-05-09"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JACCLX010000001-JACCLX010000044
WGS_SCAFLD  NZ_JACCLX010000001-NZ_JACCLX010000044
//
LOCUS       NZ_JALNZN010000000   2546005 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: Methanothrix sp. isolate SO_2017_LW1 bin 36, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JALNZN000000000
VERSION     NZ_JALNZN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27301860
            Assembly: GCF_023229265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (landfill metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2546005)
  AUTHORS   Hug,L.A. and George,N.A.
  TITLE     Virus-host interactions in a municipal landfill include
            non-specific viruses, hyper-targeted viral populations, and
            interviral conflicts
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2546005)
  AUTHORS   Hug,L.A. and George,N.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALNZN000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALNZN000000000.  This version of the project
            (01) has the accession number NZ_JALNZN010000000, and consists of
            sequences JALNZN010000001-JALNZN010000222.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAY-2020
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.158x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023229265.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 03:51:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,825
            CDSs (total)                      :: 2,771
            Genes (coding)                    :: 2,672
            CDSs (with protein)               :: 2,672
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 13 of 99
            Pseudo Genes (incomplete)         :: 85 of 99
            Pseudo Genes (internal stop)      :: 8 of 99
            Pseudo Genes (multiple problems)  :: 7 of 99
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2546005
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="SO_2017_LW1 bin 36"
                     /isolation_source="leachate from a leachate well at an
                     active municipal landfill in Southern Ontario"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Canada: Waterloo"
                     /lat_lon="43.44 N 80.58 W"
                     /collection_date="2017-10"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JALNZN010000001-JALNZN010000222
WGS_SCAFLD  NZ_JALNZN010000001-NZ_JALNZN010000222
//
LOCUS       NZ_JARVGN010000000   2306769 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: Methanocalculus sp. isolate M17C-73-07, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARVGN000000000
VERSION     NZ_JARVGN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33973104
            Assembly: GCF_029762515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocalculus sp. (mud metagenome)
  ORGANISM  Methanocalculus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 2306769)
  AUTHORS   Khomyakova,M.A., Merkel,A.Y. and Slobodkin,A.I.
  TITLE     Towards a closer acquaintance with the phylum Bathyarchaeota: the
            first representative from a coastal lake, subcultured on
            methoxylated aromatics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2306769)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARVGN000000000.1.
            The Methanocalculus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JARVGN000000000.  This version of the project
            (01) has the accession number NZ_JARVGN010000000, and consists of
            sequences JARVGN010000001-JARVGN010000578.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029762515.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 04:11:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,668
            CDSs (total)                      :: 2,624
            Genes (coding)                    :: 2,456
            CDSs (with protein)               :: 2,456
            Genes (RNA)                       :: 44
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 168
            CDSs (without protein)            :: 168
            Pseudo Genes (ambiguous residues) :: 0 of 168
            Pseudo Genes (frameshifted)       :: 4 of 168
            Pseudo Genes (incomplete)         :: 164 of 168
            Pseudo Genes (internal stop)      :: 3 of 168
            Pseudo Genes (multiple problems)  :: 3 of 168
            CRISPR Arrays                     :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306769
                     /organism="Methanocalculus sp."
                     /mol_type="genomic DNA"
                     /isolate="M17C-73-07"
                     /isolation_source="terrestrial mud volcano enrichment
                     culture M17C_73"
                     /db_xref="taxon:2004547"
                     /environmental_sample
                     /geo_loc_name="Russia: Taman Peninsula, Golubitskoye Lake"
                     /lat_lon="45.330145 N 37.263235 E"
                     /collection_date="2020-12-23"
                     /metagenome_source="mud metagenome"
                     /metagenomic
WGS         JARVGN010000001-JARVGN010000578
WGS_SCAFLD  NZ_JARVGN010000001-NZ_JARVGN010000578
//
LOCUS       NZ_JAQWDP010000000   2699874 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate STF2_54, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQWDP000000000
VERSION     NZ_JAQWDP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32737674
            Assembly: GCF_028705395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (landfill metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2699874)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2699874)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQWDP000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQWDP000000000.  This version of the project
            (01) has the accession number NZ_JAQWDP010000000, and consists of
            sequences JAQWDP010000001-JAQWDP010000114.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 49.23x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028705395.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 04:10:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,863
            CDSs (total)                      :: 2,812
            Genes (coding)                    :: 2,759
            CDSs (with protein)               :: 2,759
            Genes (RNA)                       :: 51
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 4 of 53
            Pseudo Genes (incomplete)         :: 45 of 53
            Pseudo Genes (internal stop)      :: 4 of 53
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699874
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="STF2_54"
                     /isolation_source="NEUS_F2 leachate from a leachate well
                     at an active municipal landfill in the North Eastern
                     United States"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQWDP010000001-JAQWDP010000114
WGS_SCAFLD  NZ_JAQWDP010000001-NZ_JAQWDP010000114
//
LOCUS       NZ_JAQUIC010000000   2705985 bp    DNA     linear   ENV 16-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate STCSWMC_51, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQUIC000000000
VERSION     NZ_JAQUIC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32733902
            Assembly: GCF_028681455.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (landfill metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2705985)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2705985)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQUIC000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQUIC000000000.  This version of the project
            (01) has the accession number NZ_JAQUIC010000000, and consists of
            sequences JAQUIC010000001-JAQUIC010000124.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.08x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028681455.1-RS_2024_07_16
            Annotation Date                   :: 07/16/2024 04:07:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,872
            CDSs (total)                      :: 2,819
            Genes (coding)                    :: 2,777
            CDSs (with protein)               :: 2,777
            Genes (RNA)                       :: 53
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 3 of 42
            Pseudo Genes (incomplete)         :: 36 of 42
            Pseudo Genes (internal stop)      :: 3 of 42
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705985
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="STCSWMC_51"
                     /isolation_source="NEUS_CSWMC leachate from a leachate
                     collection cistern at an active municipal landfill in the
                     North Eastern United States"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQUIC010000001-JAQUIC010000124
WGS_SCAFLD  NZ_JAQUIC010000001-NZ_JAQUIC010000124
//
LOCUS       NZ_WAKV01000000      1730289 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate S013_43, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WAKV00000000
VERSION     NZ_WAKV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12837202
            Assembly: GCF_015523185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1730289)
  AUTHORS   Reysenbach,A.L., St John,E., Meneghin,J., Flores,G.E., Podar,M.,
            Dombrowski,N., Spang,A., L'Haridon,S., Humphris,S.E., de
            Ronde,C.E.J., Caratori Tontini,F., Tivey,M., Stucker,V.K.,
            Stewart,L.C., Diehl,A. and Bach,W.
  TITLE     Complex subsurface hydrothermal fluid mixing at a submarine arc
            volcano supports distinct and highly diverse microbial communities
  JOURNAL   Proc Natl Acad Sci U S A 117 (51), 32627-32638 (2020)
   PUBMED   33277434
REFERENCE   2  (bases 1 to 1730289)
  AUTHORS   Reysenbach,A.-L., Meneghin,J. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WAKV00000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_WAKV00000000.  This version of the project
            (01) has the accession number NZ_WAKV01000000, and consists of
            sequences WAKV01000001-WAKV01000085.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.1.1-2-g02102e1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 52.57x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015523185.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 02:28:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,040
            CDSs (total)                      :: 1,991
            Genes (coding)                    :: 1,941
            CDSs (with protein)               :: 1,941
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 7 of 50
            Pseudo Genes (incomplete)         :: 43 of 50
            Pseudo Genes (internal stop)      :: 3 of 50
            Pseudo Genes (multiple problems)  :: 3 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730289
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S013_43"
                     /isolation_source="deep-sea hydrothermal deposit"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="34.86107892 S 179.0576362 E"
                     /collection_date="2018-03"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         WAKV01000001-WAKV01000085
WGS_SCAFLD  NZ_WAKV01000001-NZ_WAKV01000085
//
LOCUS       NZ_JAFQXT010000000   1717510 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG2247, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFQXT000000000
VERSION     NZ_JAFQXT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16342714
            Assembly: GCF_017406825.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1717510)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1717510)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFQXT000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFQXT000000000.  This version of the
            project (01) has the accession number NZ_JAFQXT010000000, and
            consists of sequences JAFQXT010000001-JAFQXT010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017406825.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 02:38:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,902
            CDSs (total)                      :: 1,860
            Genes (coding)                    :: 1,846
            CDSs (with protein)               :: 1,846
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 2 of 14
            Pseudo Genes (incomplete)         :: 12 of 14
            Pseudo Genes (internal stop)      :: 2 of 14
            Pseudo Genes (multiple problems)  :: 2 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717510
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG2247"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-12"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFQXT010000001-JAFQXT010000054
WGS_SCAFLD  NZ_JAFQXT010000001-NZ_JAFQXT010000054
//
LOCUS       NZ_JADQBY010000000   2875476 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Methanolobus sp. isolate Soudan_27, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JADQBY000000000
VERSION     NZ_JADQBY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16091056
            Assembly: GCF_016278385.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanolobus sp. (mine drainage metagenome)
  ORGANISM  Methanolobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 2875476)
  AUTHORS   Telling,J., Alexander,S., Gralnick,J., Sherwood Lollar,B. and
            Toner,B.
  TITLE     Novel microbial groups drive productivity in an Archean Iron
            formation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2875476)
  AUTHORS   Sheik,C., Badalamenti,J. and Bond,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2020) Biology, University of Minnesota Duluth,
            2205 East 5th st, Duluth, MN 55812, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADQBY000000000.1.
            The Methanolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JADQBY000000000.  This version of the project
            (01) has the accession number NZ_JADQBY010000000, and consists of
            sequences JADQBY010000001-JADQBY010000052.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAY-2018
            Assembly Method        :: SPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016278385.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 02:39:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,936
            CDSs (total)                      :: 2,890
            Genes (coding)                    :: 2,837
            CDSs (with protein)               :: 2,837
            Genes (RNA)                       :: 46
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 16 of 53
            Pseudo Genes (incomplete)         :: 31 of 53
            Pseudo Genes (internal stop)      :: 19 of 53
            Pseudo Genes (multiple problems)  :: 11 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2875476
                     /organism="Methanolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="Soudan_27"
                     /isolation_source="brine fluids"
                     /db_xref="taxon:1874737"
                     /environmental_sample
                     /geo_loc_name="USA: Soudan Iron Mine, Minnesota"
                     /lat_lon="47.82333 N 92.23722 W"
                     /collection_date="2014-11-10"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         JADQBY010000001-JADQBY010000052
WGS_SCAFLD  NZ_JADQBY010000001-NZ_JADQBY010000052
//
LOCUS       NZ_JAGGSK010000000   1645980 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate AUK020, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGSK000000000
VERSION     NZ_JAGGSK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18353516
            Assembly: GCF_021159085.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1645980)
  AUTHORS   Speth,D.R., Yu,F.B., Connon,S.A., Lim,S., Magyar,J.S., Pena,M.E.,
            Quake,S.R. and Orphan,V.J.
  TITLE     Microbial community of recently discovered Auka vent field sheds
            light on vent biogeography and evolutionary history of thermophily
  JOURNAL   bioRxiv (2022) In press
  REMARK    DOI: 10.1101/2021.08.02.454472
REFERENCE   2  (bases 1 to 1645980)
  AUTHORS   Speth,D.R. and Orphan,V.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Geology and Planetary Sciences, California
            Institute of Technology, 1200 E California Blvd, MC100-23,
            Pasadena, CA 91125, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGSK000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAGGSK000000000.  This version of the project
            (01) has the accession number NZ_JAGGSK010000000, and consists of
            sequences JAGGSK010000001-JAGGSK010000162.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 151.46x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021159085.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 03:12:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,892
            CDSs (total)                      :: 1,845
            Genes (coding)                    :: 1,776
            CDSs (with protein)               :: 1,776
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 17 of 69
            Pseudo Genes (incomplete)         :: 55 of 69
            Pseudo Genes (internal stop)      :: 5 of 69
            Pseudo Genes (multiple problems)  :: 7 of 69
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645980
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="AUK020"
                     /isolation_source="marine hydrothermal sediment"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Mexico, Pescadero Basin"
                     /lat_lon="23.957043 N 108.862273 W"
                     /collection_date="2015-04-18"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JAGGSK010000001-JAGGSK010000162
WGS_SCAFLD  NZ_JAGGSK010000001-NZ_JAGGSK010000162
//
LOCUS       NZ_JAJGBK010000000   2287273 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate NL_3.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJGBK000000000
VERSION     NZ_JAJGBK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22543508
            Assembly: GCF_020696975.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (coal metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2287273)
  AUTHORS   Li,Y.
  TITLE     Insights into the ecological roles of assembling genomes for
            stimulated methanogenic archaea Methanoculleus in coal seams
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2287273)
  AUTHORS   Li,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2021) State Key Laboratory of Mining Response and
            Disaster Prevention and Control in Deep Coal Mines, Anhui
            University of Science & Technology, Taifeng Road, Huainan, Anhui
            232001, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJGBK000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAJGBK000000000.  This version of the project
            (01) has the accession number NZ_JAJGBK010000000, and consists of
            sequences JAJGBK010000001-JAJGBK010000033.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: FEB-2021
            Assembly Method        :: Metahit v. 1.2.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 97.71x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020696975.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 03:09:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,373
            CDSs (total)                      :: 2,318
            Genes (coding)                    :: 2,303
            CDSs (with protein)               :: 2,303
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 3 of 15
            Pseudo Genes (incomplete)         :: 13 of 15
            Pseudo Genes (internal stop)      :: 0 of 15
            Pseudo Genes (multiple problems)  :: 1 of 15
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287273
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="NL_3.1"
                     /isolation_source="coal samples cultured in anaerobic
                     conditions in minimal salts plus yeast media"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="China: Huainan"
                     /lat_lon="32.77 N 116.48 E"
                     /collection_date="2019-05-23"
                     /metagenome_source="coal metagenome"
                     /metagenomic
WGS         JAJGBK010000001-JAJGBK010000033
WGS_SCAFLD  NZ_JAJGBK010000001-NZ_JAJGBK010000033
//
LOCUS       NZ_JAJGBL010000000   2503462 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate NL_17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJGBL000000000
VERSION     NZ_JAJGBL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22543509
            Assembly: GCF_020696995.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (coal metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2503462)
  AUTHORS   Li,Y.
  TITLE     Insights into the ecological roles of assembling genomes for
            stimulated methanogenic archaea Methanoculleus in coal seams
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2503462)
  AUTHORS   Li,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2021) State Key Laboratory of Mining Response and
            Disaster Prevention and Control in Deep Coal Mines, Anhui
            University of Science & Technology, Taifeng Road, Huainan, Anhui
            232001, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJGBL000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAJGBL000000000.  This version of the project
            (01) has the accession number NZ_JAJGBL010000000, and consists of
            sequences JAJGBL010000001-JAJGBL010000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: FEB-2021
            Assembly Method        :: Metahit v. 1.2.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.4x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020696995.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 03:09:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,555
            CDSs (total)                      :: 2,502
            Genes (coding)                    :: 2,490
            CDSs (with protein)               :: 2,490
            Genes (RNA)                       :: 53
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 3 of 12
            Pseudo Genes (incomplete)         :: 10 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            Pseudo Genes (multiple problems)  :: 1 of 12
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2503462
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="NL_17"
                     /isolation_source="coal samples cultured in anaerobic
                     conditions in minimal salts plus yeast media"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="China: Huainan"
                     /lat_lon="32.77 N 116.48 E"
                     /collection_date="2019-05-23"
                     /metagenome_source="coal metagenome"
                     /metagenomic
WGS         JAJGBL010000001-JAJGBL010000016
WGS_SCAFLD  NZ_JAJGBL010000001-NZ_JAJGBL010000016
//
LOCUS       NZ_JACAEH010000000   1993934 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Nitrososphaera sp. isolate L.E.AR.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACAEH000000000
VERSION     NZ_JACAEH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14673727
            Assembly: GCF_013388945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrososphaera sp. (hot springs metagenome)
  ORGANISM  Nitrososphaera sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Nitrososphaera.
REFERENCE   1  (bases 1 to 1993934)
  AUTHORS   Levy-Booth,D.J.
  TITLE     Genomics and metatranscriptomics reveal distinct biogeochemical
            cycling and lignin-degrading populations across a thermal swamp
            temperature gradient
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1993934)
  AUTHORS   Levy-Booth,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2020) Microbiology and Immunology, University of
            British Columbia, 2350 Health Sciences Mall, Vancouver, BC V6T 1Z3,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACAEH000000000.1.
            The Nitrososphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JACAEH000000000.  This version of the project
            (01) has the accession number NZ_JACAEH010000000, and consists of
            sequences JACAEH010000001-JACAEH010000031.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-FEB-2020
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39.91x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013388945.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 03:09:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,468
            CDSs (total)                      :: 2,419
            Genes (coding)                    :: 2,395
            CDSs (with protein)               :: 2,395
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 1 of 24
            Pseudo Genes (incomplete)         :: 20 of 24
            Pseudo Genes (internal stop)      :: 5 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1993934
                     /organism="Nitrososphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="L.E.AR.1"
                     /isolation_source="hot spring sediment"
                     /db_xref="taxon:1971748"
                     /environmental_sample
                     /geo_loc_name="Canada: Liard River"
                     /lat_lon="59.431 N 126.1 W"
                     /collection_date="2018-08-27"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JACAEH010000001-JACAEH010000031
WGS_SCAFLD  NZ_JACAEH010000001-NZ_JACAEH010000031
//
LOCUS       NZ_CAMVTE010000000   2249770 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR8387719_bin.80_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMVTE000000000
VERSION     NZ_CAMVTE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111499129
            Sequence Read Archive: SRR8387719
            Assembly: GCF_947170395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobrevibacter sp. (sheep gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2249770)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMVTE000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAMVTE000000000.  This version
            of the project (01) has the accession number NZ_CAMVTE010000000,
            and consists of sequences CAMVTE010000001-CAMVTE010000070.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP141523.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR8387719.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_947170395.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,116
            CDSs (total)                      :: 2,079
            Genes (coding)                    :: 2,059
            CDSs (with protein)               :: 2,059
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 5 of 20
            Pseudo Genes (incomplete)         :: 17 of 20
            Pseudo Genes (internal stop)      :: 2 of 20
            Pseudo Genes (multiple problems)  :: 3 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249770
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR8387719_bin.80_metaWRAP_v1.3_MAG"
                     /isolation_source="sheep gut metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="sheep gut metagenome"
                     /metagenomic
WGS         CAMVTE010000001-CAMVTE010000070
WGS_SCAFLD  NZ_CAMVTE010000001-NZ_CAMVTE010000070
//
LOCUS       NZ_JALWSX010000000   1838575 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate M2_metabat2_scaf2bin.116, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALWSX000000000
VERSION     NZ_JALWSX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27360715
            Assembly: GCF_026993455.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1838575)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838575)
  AUTHORS   Reysenbach,A.-L., Anantharaman,K., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALWSX000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALWSX000000000.  This version of the project
            (01) has the accession number NZ_JALWSX010000000, and consists of
            sequences JALWSX010000001-JALWSX010000088.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 157.36x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026993455.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:06:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,138
            CDSs (total)                      :: 2,090
            Genes (coding)                    :: 2,031
            CDSs (with protein)               :: 2,031
            Genes (RNA)                       :: 48
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 18 of 59
            Pseudo Genes (incomplete)         :: 42 of 59
            Pseudo Genes (internal stop)      :: 5 of 59
            Pseudo Genes (multiple problems)  :: 6 of 59
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838575
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="M2_metabat2_scaf2bin.116"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2015"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALWSX010000001-JALWSX010000088
WGS_SCAFLD  NZ_JALWSX010000001-NZ_JALWSX010000088
//
LOCUS       NZ_JALUFF010000000   1889050 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate S143_metabat2_scaf2bin.042_VB, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALUFF000000000
VERSION     NZ_JALUFF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27359232
            Assembly: GCF_027052235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1889050)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889050)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALUFF000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALUFF000000000.  This version of the project
            (01) has the accession number NZ_JALUFF010000000, and consists of
            sequences JALUFF010000001-JALUFF010000086.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.47x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027052235.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:09:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,175
            CDSs (total)                      :: 2,125
            Genes (coding)                    :: 2,086
            CDSs (with protein)               :: 2,086
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 6 of 39
            Pseudo Genes (incomplete)         :: 34 of 39
            Pseudo Genes (internal stop)      :: 0 of 39
            Pseudo Genes (multiple problems)  :: 1 of 39
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889050
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S143_metabat2_scaf2bin.042_VB"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Brothers volcano"
                     /collection_date="2018"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALUFF010000001-JALUFF010000086
WGS_SCAFLD  NZ_JALUFF010000001-NZ_JALUFF010000086
//
LOCUS       NZ_JAILWC010000000   1854254 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate ECS23A1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAILWC000000000
VERSION     NZ_JAILWC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20425648
            Assembly: GCF_025699125.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (estuary metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1854254)
  AUTHORS   Liu,L.
  TITLE     Genomes of ammonia-oxidizing archaea derived from marine sediments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1854254)
  AUTHORS   Liu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) School of Life Sciences and Biotechnology,
            Shanghai Jiao Tong University (SJTU), 800 Dongchuan RD. Minhang
            District, Shanghai 200240, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAILWC000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAILWC000000000.  This version of the project
            (01) has the accession number NZ_JAILWC010000000, and consists of
            sequences JAILWC010000001-JAILWC010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2627.84x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025699125.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:03:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,248
            CDSs (total)                      :: 2,200
            Genes (coding)                    :: 2,197
            CDSs (with protein)               :: 2,197
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854254
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="ECS23A1"
                     /isolation_source="enrichment culture inoculated with
                     surface estuarine sediment"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="China: the East China Sea"
                     /lat_lon="30.8417 N 122.6282 E"
                     /collection_date="2021-05-07"
                     /metagenome_source="estuary metagenome"
                     /metagenomic
WGS         JAILWC010000001-JAILWC010000006
WGS_SCAFLD  NZ_JAILWC010000001-NZ_JAILWC010000006
//
LOCUS       NZ_JALTXP010000000   1703104 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate S141_metabat1_scaf2bin.103, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALTXP000000000
VERSION     NZ_JALTXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27359034
            Assembly: GCF_027048465.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1703104)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703104)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALTXP000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALTXP000000000.  This version of the project
            (01) has the accession number NZ_JALTXP010000000, and consists of
            sequences JALTXP010000001-JALTXP010000153.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 8.89x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027048465.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:08:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,072
            CDSs (total)                      :: 2,029
            Genes (coding)                    :: 1,933
            CDSs (with protein)               :: 1,933
            Genes (RNA)                       :: 43
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 9 of 96
            Pseudo Genes (incomplete)         :: 85 of 96
            Pseudo Genes (internal stop)      :: 6 of 96
            Pseudo Genes (multiple problems)  :: 4 of 96
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703104
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S141_metabat1_scaf2bin.103"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Brothers volcano"
                     /collection_date="2018"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALTXP010000001-JALTXP010000153
WGS_SCAFLD  NZ_JALTXP010000001-NZ_JALTXP010000153
//
LOCUS       NZ_CALDKF010000000   2094422 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR6425803_bin.102_CONCOCT_v1.1_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CALDKF000000000
VERSION     NZ_CALDKF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14076009
            Sequence Read Archive: SRR6425803
            Assembly: GCF_937898925.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobrevibacter sp. (metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2094422)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALDKF000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CALDKF000000000.  This version
            of the project (01) has the accession number NZ_CALDKF010000000,
            and consists of sequences CALDKF010000001-CALDKF010000123.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135528.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR6425803.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937898925.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:25:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,078
            CDSs (total)                      :: 2,043
            Genes (coding)                    :: 1,997
            CDSs (with protein)               :: 1,997
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 1 of 46
            Pseudo Genes (incomplete)         :: 44 of 46
            Pseudo Genes (internal stop)      :: 1 of 46
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094422
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR6425803_bin.102_CONCOCT_v1.1_MAG"
                     /isolation_source="metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="metagenome"
                     /metagenomic
WGS         CALDKF010000001-CALDKF010000123
WGS_SCAFLD  NZ_CALDKF010000001-NZ_CALDKF010000123
//
LOCUS       NZ_JALWGA010000000   1957101 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate T11_metabat2_scaf2bin.116, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALWGA000000000
VERSION     NZ_JALWGA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27360970
            Assembly: GCF_027038865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1957101)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957101)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALWGA000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALWGA000000000.  This version of the project
            (01) has the accession number NZ_JALWGA010000000, and consists of
            sequences JALWGA010000001-JALWGA010000242.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.14x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027038865.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:11:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,295
            CDSs (total)                      :: 2,241
            Genes (coding)                    :: 2,136
            CDSs (with protein)               :: 2,136
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 3 of 105
            Pseudo Genes (incomplete)         :: 102 of 105
            Pseudo Genes (internal stop)      :: 2 of 105
            Pseudo Genes (multiple problems)  :: 2 of 105
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957101
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="T11_metabat2_scaf2bin.116"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2015"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALWGA010000001-JALWGA010000242
WGS_SCAFLD  NZ_JALWGA010000001-NZ_JALWGA010000242
//
LOCUS       NZ_JALWFH010000000   1725233 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate T11_metabat2_scaf2bin.037, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALWFH000000000
VERSION     NZ_JALWFH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27360951
            Assembly: GCF_027100975.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1725233)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725233)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALWFH000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALWFH000000000.  This version of the project
            (01) has the accession number NZ_JALWFH010000000, and consists of
            sequences JALWFH010000001-JALWFH010000127.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28.46x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027100975.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:18:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,040
            CDSs (total)                      :: 1,990
            Genes (coding)                    :: 1,929
            CDSs (with protein)               :: 1,929
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 7 of 61
            Pseudo Genes (incomplete)         :: 54 of 61
            Pseudo Genes (internal stop)      :: 2 of 61
            Pseudo Genes (multiple problems)  :: 2 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725233
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="T11_metabat2_scaf2bin.037"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2015"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALWFH010000001-JALWFH010000127
WGS_SCAFLD  NZ_JALWFH010000001-NZ_JALWFH010000127
//
LOCUS       NZ_JAQVNX010000000   2407975 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Methanofollis sp. isolate STF1_167, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQVNX000000000
VERSION     NZ_JAQVNX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32737266
            Assembly: GCF_028702905.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanofollis sp. (landfill metagenome)
  ORGANISM  Methanofollis sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanofollis.
REFERENCE   1  (bases 1 to 2407975)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2407975)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQVNX000000000.1.
            The Methanofollis sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQVNX000000000.  This version of the project
            (01) has the accession number NZ_JAQVNX010000000, and consists of
            sequences JAQVNX010000001-JAQVNX010000190.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6.02x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028702905.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,537
            CDSs (total)                      :: 2,485
            Genes (coding)                    :: 2,412
            CDSs (with protein)               :: 2,412
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 1 of 73
            Pseudo Genes (incomplete)         :: 70 of 73
            Pseudo Genes (internal stop)      :: 2 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407975
                     /organism="Methanofollis sp."
                     /mol_type="genomic DNA"
                     /isolate="STF1_167"
                     /isolation_source="NEUS_F1 leachate from a leachate well
                     at an active municipal landfill in the North Eastern
                     United States"
                     /db_xref="taxon:2052835"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQVNX010000001-JAQVNX010000190
WGS_SCAFLD  NZ_JAQVNX010000001-NZ_JAQVNX010000190
//
LOCUS       NZ_JARRCR010000000   1944832 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Methanobacterium sp. isolate DJKA113_NP-J24_bin.44, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JARRCR000000000
VERSION     NZ_JARRCR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33401096
            Assembly: GCF_029981945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (subsurface metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 1944832)
  AUTHORS   Amundson,K. and Wilkins,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2023) Soil and Crop Sciences, Colorado State
            University, 1170 Campus Delivery, Fort Collins, CO 80523, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRCR000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JARRCR000000000.  This version of the project
            (01) has the accession number NZ_JARRCR010000000, and consists of
            sequences JARRCR010000001-JARRCR010000021.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: idba-ud v. 1.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 7.398063196x
            Sequencing Technology  :: Illumnina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029981945.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 04:59:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,990
            CDSs (total)                      :: 1,945
            Genes (coding)                    :: 1,925
            CDSs (with protein)               :: 1,925
            Genes (RNA)                       :: 45
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 8 of 20
            Pseudo Genes (incomplete)         :: 10 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 3 of 20
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1944832
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="DJKA113_NP-J24_bin.44"
                     /isolation_source="Produced fluids from hydraulically
                     fractured shales"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="USA: Colorado"
                     /lat_lon="40.411582 N 104.348363 W"
                     /collection_date="2019"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         JARRCR010000001-JARRCR010000021
WGS_SCAFLD  NZ_JARRCR010000001-NZ_JARRCR010000021
//
LOCUS       NZ_JASEFJ010000000   1913281 bp    DNA     linear   ENV 17-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate Yes49-05, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JASEFJ000000000
VERSION     NZ_JASEFJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34587891
            Assembly: GCF_030019085.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (groundwater metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 1913281)
  AUTHORS   Zavarzina,D.G., Maslov,A., Merkel,A.Y., Kharitonova,N.A.,
            Klyukina,A., Baranovskaya,E.I., Baydariko,E.A., Potapov,E.G.,
            Zaylina,K.S., Chernyh,N.A. and Gavrilov,S.N.
  TITLE     Shadow of the past - crucial junctions of the Earth's biosphere are
            still ongoing in layered subsurface aquifers
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1913281)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASEFJ000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JASEFJ000000000.  This version of the project
            (01) has the accession number NZ_JASEFJ010000000, and consists of
            sequences JASEFJ010000001-JASEFJ010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. spades 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31,433235x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030019085.1-RS_2024_07_17
            Annotation Date                   :: 07/17/2024 05:03:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,995
            CDSs (total)                      :: 1,941
            Genes (coding)                    :: 1,912
            CDSs (with protein)               :: 1,912
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 4 of 29
            Pseudo Genes (incomplete)         :: 25 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            Pseudo Genes (multiple problems)  :: 1 of 29
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913281
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="Yes49-05"
                     /isolation_source="groundwater"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="Russia: Yessentuki mineral water deposit"
                     /lat_lon="44.11401979 N 42.90694440 E"
                     /collection_date="2020-11"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JASEFJ010000001-JASEFJ010000059
WGS_SCAFLD  NZ_JASEFJ010000001-NZ_JASEFJ010000059
//
LOCUS       NZ_CACZUM010000000   2270695 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG12954, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACZUM000000000
VERSION     NZ_CACZUM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151090
            Assembly: GCF_902784295.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2270695)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACZUM000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACZUM000000000.  This version
            of the project (01) has the accession number NZ_CACZUM010000000,
            and consists of sequences CACZUM010000001-CACZUM010000051.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902784295.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 01:22:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,216
            CDSs (total)                      :: 2,182
            Genes (coding)                    :: 2,149
            CDSs (with protein)               :: 2,149
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 18 of 33
            Pseudo Genes (incomplete)         :: 15 of 33
            Pseudo Genes (internal stop)      :: 2 of 33
            Pseudo Genes (multiple problems)  :: 1 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270695
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG12954"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACZUM010000001-CACZUM010000051
WGS_SCAFLD  NZ_CACZUM010000001-NZ_CACZUM010000051
//
LOCUS       NZ_WANY01000000      1742345 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Ferroglobus sp. isolate S141_76_esom, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WANY00000000
VERSION     NZ_WANY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12837283
            Assembly: GCF_015521575.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ferroglobus sp. (hydrothermal vent metagenome)
  ORGANISM  Ferroglobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi;
            Archaeoglobales; Archaeoglobaceae; Ferroglobus.
REFERENCE   1  (bases 1 to 1742345)
  AUTHORS   Reysenbach,A.L., St John,E., Meneghin,J., Flores,G.E., Podar,M.,
            Dombrowski,N., Spang,A., L'Haridon,S., Humphris,S.E., de
            Ronde,C.E.J., Caratori Tontini,F., Tivey,M., Stucker,V.K.,
            Stewart,L.C., Diehl,A. and Bach,W.
  TITLE     Complex subsurface hydrothermal fluid mixing at a submarine arc
            volcano supports distinct and highly diverse microbial communities
  JOURNAL   Proc Natl Acad Sci U S A 117 (51), 32627-32638 (2020)
   PUBMED   33277434
REFERENCE   2  (bases 1 to 1742345)
  AUTHORS   Reysenbach,A.-L., Meneghin,J. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WANY00000000.1.
            The Ferroglobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_WANY00000000.  This version of the project
            (01) has the accession number NZ_WANY01000000, and consists of
            sequences WANY01000001-WANY01000274.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.1.1-2-g02102e1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.01x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015521575.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 02:03:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,226
            CDSs (total)                      :: 2,181
            Genes (coding)                    :: 2,108
            CDSs (with protein)               :: 2,108
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 5 of 73
            Pseudo Genes (incomplete)         :: 67 of 73
            Pseudo Genes (internal stop)      :: 6 of 73
            Pseudo Genes (multiple problems)  :: 3 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742345
                     /organism="Ferroglobus sp."
                     /mol_type="genomic DNA"
                     /isolate="S141_76_esom"
                     /isolation_source="deep-sea hydrothermal deposit"
                     /db_xref="taxon:2614230"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="34.86111866 S 179.0576651 E"
                     /collection_date="2018-03"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         WANY01000001-WANY01000274
WGS_SCAFLD  NZ_WANY01000001-NZ_WANY01000274
//
LOCUS       NZ_JAGDXI010000000   1517680 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Caldisphaera sp. isolate KMA_Bin23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGDXI000000000
VERSION     NZ_JAGDXI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17914442
            Assembly: GCF_023256325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldisphaera sp. (hot springs metagenome)
  ORGANISM  Caldisphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Acidilobales;
            Caldisphaeraceae; Caldisphaera.
REFERENCE   1  (bases 1 to 1517680)
  AUTHORS   Wemheuer,B.
  TITLE     Collection of 70 Metagenome-assembled genomes reconstructed from
            two hot spring metagenomes derived from Kamchatka, Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1517680)
  AUTHORS   Wemheuer,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2021) Institute of Microbiology and Genetics (AG
            Daniel), University of Goettingen, Grisebachstr. 8, Goettingen
            37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGDXI000000000.1.
            The Caldisphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAGDXI000000000.  This version of the project
            (01) has the accession number NZ_JAGDXI010000000, and consists of
            sequences JAGDXI010000001-JAGDXI010000050.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.55483x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023256325.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 02:46:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,596
            CDSs (total)                      :: 1,550
            Genes (coding)                    :: 1,531
            CDSs (with protein)               :: 1,531
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 3 of 19
            Pseudo Genes (incomplete)         :: 19 of 19
            Pseudo Genes (internal stop)      :: 3 of 19
            Pseudo Genes (multiple problems)  :: 4 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517680
                     /organism="Caldisphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="KMA_Bin23"
                     /isolation_source="thermophilic sediment from acid hot
                     spring"
                     /db_xref="taxon:2060322"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, Mutnovsky"
                     /lat_lon="52.45 N 158.2 E"
                     /collection_date="2001-08-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAGDXI010000001-JAGDXI010000050
WGS_SCAFLD  NZ_JAGDXI010000001-NZ_JAGDXI010000050
//
LOCUS       NZ_JALNXU010000000   3352654 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Methanoculleus sp. isolate SO_2017_CLC bin 33, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JALNXU000000000
VERSION     NZ_JALNXU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27301815
            Assembly: GCF_023230185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (landfill metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 3352654)
  AUTHORS   Hug,L.A. and George,N.A.
  TITLE     Virus-host interactions in a municipal landfill include
            non-specific viruses, hyper-targeted viral populations, and
            interviral conflicts
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3352654)
  AUTHORS   Hug,L.A. and George,N.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALNXU000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALNXU000000000.  This version of the project
            (01) has the accession number NZ_JALNXU010000000, and consists of
            sequences JALNXU010000001-JALNXU010000276.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAY-2020
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 62.1501x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023230185.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 02:39:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,735
            CDSs (total)                      :: 3,679
            Genes (coding)                    :: 3,627
            CDSs (with protein)               :: 3,627
            Genes (RNA)                       :: 56
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 3 of 52
            Pseudo Genes (incomplete)         :: 44 of 52
            Pseudo Genes (internal stop)      :: 5 of 52
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352654
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="SO_2017_CLC bin 33"
                     /isolation_source="leachate from a composite leachate
                     cistern at an active municipal landfill in Southern
                     Ontario"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="Canada: Waterloo"
                     /lat_lon="43.44 N 80.58 W"
                     /collection_date="2017-10"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JALNXU010000001-JALNXU010000276
WGS_SCAFLD  NZ_JALNXU010000001-NZ_JALNXU010000276
//
LOCUS       NZ_CAJOKQ010000000   2057366 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate Cattle_4_mag_56, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAJOKQ000000000
VERSION     NZ_CAJOKQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8030314
            Assembly: GCF_905235185.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2057366)
  AUTHORS   Vasoya,D., Smith,R., Warr,A., Glendinning,L. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2021) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJOKQ000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAJOKQ000000000.  This version
            of the project (01) has the accession number NZ_CAJOKQ010000000,
            and consists of sequences CAJOKQ010000001-CAJOKQ010000146.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905235185.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 01:49:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,939
            CDSs (total)                      :: 1,903
            Genes (coding)                    :: 1,853
            CDSs (with protein)               :: 1,853
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 17 of 50
            Pseudo Genes (incomplete)         :: 32 of 50
            Pseudo Genes (internal stop)      :: 2 of 50
            Pseudo Genes (multiple problems)  :: 1 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057366
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="Cattle_4_mag_56"
                     /isolation_source="metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         CAJOKQ010000001-CAJOKQ010000146
WGS_SCAFLD  NZ_CAJOKQ010000001-NZ_CAJOKQ010000146
//
LOCUS       NZ_JACRGA010000000   2607763 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Methanobacterium sp. isolate
            NC_groundwater_1739_Pr3_B-0.1um_39_112, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACRGA000000000
VERSION     NZ_JACRGA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15436386
            Assembly: GCF_016217785.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (groundwater metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2607763)
  AUTHORS   He,C.Y., Keren,R., Whittaker,M., Farag,I.F., Doudna,J., Cate,J.H.D.
            and Banfield,J.F.
  TITLE     Huge and variable diversity of episymbiotic CPR bacteria and DPANN
            archaea in groundwater ecosystems
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2607763)
  AUTHORS   He,C.Y., Keren,R., Whittaker,M., Farag,I.F., Doudna,J., Cate,J.H.D.
            and Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2020) Earth and Planetary Science, Jill
            Banfield's Lab at Berkeley, University of California, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACRGA000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JACRGA000000000.  This version of the project
            (01) has the accession number NZ_JACRGA010000000, and consists of
            sequences JACRGA010000001-JACRGA010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.60
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39.05x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016217785.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 01:43:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,553
            CDSs (total)                      :: 2,506
            Genes (coding)                    :: 2,491
            CDSs (with protein)               :: 2,491
            Genes (RNA)                       :: 47
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 2 of 15
            Pseudo Genes (incomplete)         :: 14 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607763
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="NC_groundwater_1739_Pr3_B-0.1um_39_112"
                     /isolation_source="groundwater"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="USA: California, Middletown"
                     /lat_lon="38.70266 N 122.51889 W"
                     /collection_date="2017-11-19"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
                     /note="SR2-
                     17_Biohub_180515_Methanobacterium_sp__Maddingley_MBC34_39_
                     112"
WGS         JACRGA010000001-JACRGA010000027
WGS_SCAFLD  NZ_JACRGA010000001-NZ_JACRGA010000027
//
LOCUS       NZ_JAGAQL010000000   2299150 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG8680, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGAQL000000000
VERSION     NZ_JAGAQL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16349182
            Assembly: GCF_017622775.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2299150)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2299150)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGAQL000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAGAQL000000000.  This version of the
            project (01) has the accession number NZ_JAGAQL010000000, and
            consists of sequences JAGAQL010000001-JAGAQL010000257.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017622775.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 01:47:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,275
            CDSs (total)                      :: 2,236
            Genes (coding)                    :: 2,165
            CDSs (with protein)               :: 2,165
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 5 of 71
            Pseudo Genes (incomplete)         :: 64 of 71
            Pseudo Genes (internal stop)      :: 5 of 71
            Pseudo Genes (multiple problems)  :: 3 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299150
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG8680"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="water deer"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-12-27"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAGAQL010000001-JAGAQL010000257
WGS_SCAFLD  NZ_JAGAQL010000001-NZ_JAGAQL010000257
//
LOCUS       NZ_JAGDXD010000000   2067067 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Caldivirga sp. isolate KMA_Bin28, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGDXD000000000
VERSION     NZ_JAGDXD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17914447
            Assembly: GCF_023256255.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldivirga sp. (hot springs metagenome)
  ORGANISM  Caldivirga sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Caldivirga.
REFERENCE   1  (bases 1 to 2067067)
  AUTHORS   Wemheuer,B.
  TITLE     Collection of 70 Metagenome-assembled genomes reconstructed from
            two hot spring metagenomes derived from Kamchatka, Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2067067)
  AUTHORS   Wemheuer,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2021) Institute of Microbiology and Genetics (AG
            Daniel), University of Goettingen, Grisebachstr. 8, Goettingen
            37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGDXD000000000.1.
            The Caldivirga sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAGDXD000000000.  This version of the project
            (01) has the accession number NZ_JAGDXD010000000, and consists of
            sequences JAGDXD010000001-JAGDXD010000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.92313x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023256255.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:03:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,159
            CDSs (total)                      :: 2,118
            Genes (coding)                    :: 2,065
            CDSs (with protein)               :: 2,065
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 13 of 53
            Pseudo Genes (incomplete)         :: 45 of 53
            Pseudo Genes (internal stop)      :: 7 of 53
            Pseudo Genes (multiple problems)  :: 10 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067067
                     /organism="Caldivirga sp."
                     /mol_type="genomic DNA"
                     /isolate="KMA_Bin28"
                     /isolation_source="thermophilic sediment from acid hot
                     spring"
                     /db_xref="taxon:2080243"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, Mutnovsky"
                     /lat_lon="52.45 N 158.2 E"
                     /collection_date="2001-08-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAGDXD010000001-JAGDXD010000071
WGS_SCAFLD  NZ_JAGDXD010000001-NZ_JAGDXD010000071
//
LOCUS       NZ_DAICVY010000000   2145851 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Ferroplasma sp. isolate clean2886, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAICVY000000000
VERSION     NZ_DAICVY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28407094
            Sequence Read Archive: SRR13300764
            Assembly: GCF_027366685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ferroplasma sp. (mine drainage metagenome)
  ORGANISM  Ferroplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma.
REFERENCE   1  (bases 1 to 2145851)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145851)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAICVY000000000.1.
            The Ferroplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAICVY000000000.  This version of the project
            (01) has the accession number NZ_DAICVY010000000, and consists of
            sequences DAICVY010000001-DAICVY010000133.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027366685.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:52:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,337
            CDSs (total)                      :: 2,283
            Genes (coding)                    :: 2,232
            CDSs (with protein)               :: 2,232
            Genes (RNA)                       :: 54
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 6 of 51
            Pseudo Genes (incomplete)         :: 45 of 51
            Pseudo Genes (internal stop)      :: 4 of 51
            Pseudo Genes (multiple problems)  :: 3 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145851
                     /organism="Ferroplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="clean2886"
                     /isolation_source="sediment"
                     /db_xref="taxon:2591003"
                     /environmental_sample
                     /geo_loc_name="China: Guangxi, Wuyi"
                     /lat_lon="25.14787 N 107.50102 E"
                     /collection_date="2016-12-07"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAICVY010000001-DAICVY010000133
WGS_SCAFLD  NZ_DAICVY010000001-NZ_DAICVY010000133
//
LOCUS       NZ_JAGDXM010000000   1545821 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Thermoplasma sp. isolate KMA_Bin19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGDXM000000000
VERSION     NZ_JAGDXM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17914438
            Assembly: GCF_023256435.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermoplasma sp. (hot springs metagenome)
  ORGANISM  Thermoplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Thermoplasmataceae; Thermoplasma.
REFERENCE   1  (bases 1 to 1545821)
  AUTHORS   Wemheuer,B.
  TITLE     Collection of 70 Metagenome-assembled genomes reconstructed from
            two hot spring metagenomes derived from Kamchatka, Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1545821)
  AUTHORS   Wemheuer,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2021) Institute of Microbiology and Genetics (AG
            Daniel), University of Goettingen, Grisebachstr. 8, Goettingen
            37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGDXM000000000.1.
            The Thermoplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAGDXM000000000.  This version of the project
            (01) has the accession number NZ_JAGDXM010000000, and consists of
            sequences JAGDXM010000001-JAGDXM010000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.25211x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023256435.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 02:58:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,601
            CDSs (total)                      :: 1,554
            Genes (coding)                    :: 1,529
            CDSs (with protein)               :: 1,529
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 2 of 25
            Pseudo Genes (incomplete)         :: 23 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545821
                     /organism="Thermoplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="KMA_Bin19"
                     /isolation_source="thermophilic sediment from acid hot
                     spring"
                     /db_xref="taxon:1973142"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, Mutnovsky"
                     /lat_lon="52.45 N 158.2 E"
                     /collection_date="2001-08-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAGDXM010000001-JAGDXM010000060
WGS_SCAFLD  NZ_JAGDXM010000001-NZ_JAGDXM010000060
//
LOCUS       NZ_JAMONU010000000   1721316 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate 4281-140_metabat2_scaf2bin.063, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAMONU000000000
VERSION     NZ_JAMONU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27358054
            Assembly: GCF_027066465.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1721316)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721316)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMONU000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAMONU000000000.  This version of the project
            (01) has the accession number NZ_JAMONU010000000, and consists of
            sequences JAMONU010000001-JAMONU010000214.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22.36x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027066465.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:14:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,106
            CDSs (total)                      :: 2,065
            Genes (coding)                    :: 1,980
            CDSs (with protein)               :: 1,980
            Genes (RNA)                       :: 41
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 38
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 5 of 85
            Pseudo Genes (incomplete)         :: 79 of 85
            Pseudo Genes (internal stop)      :: 1 of 85
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721316
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="4281-140_metabat2_scaf2bin.063"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: East Pacific Rise"
                     /collection_date="2006"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JAMONU010000001-JAMONU010000214
WGS_SCAFLD  NZ_JAMONU010000001-NZ_JAMONU010000214
//
LOCUS       NZ_JAILWM010000000   1749482 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate ECS31A1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAILWM000000000
VERSION     NZ_JAILWM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20425658
            Assembly: GCF_025698945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (estuary metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1749482)
  AUTHORS   Liu,L.
  TITLE     Genomes of ammonia-oxidizing archaea derived from marine sediments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1749482)
  AUTHORS   Liu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2021) School of Life Sciences and Biotechnology,
            Shanghai Jiao Tong University (SJTU), 800 Dongchuan RD. Minhang
            District, Shanghai 200240, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAILWM000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAILWM000000000.  This version of the project
            (01) has the accession number NZ_JAILWM010000000, and consists of
            sequences JAILWM010000001-JAILWM010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5035.5x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025698945.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:12:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,153
            CDSs (total)                      :: 2,105
            Genes (coding)                    :: 2,096
            CDSs (with protein)               :: 2,096
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 9 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749482
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="ECS31A1"
                     /isolation_source="enrichment culture inoculated with
                     surface estuarine sediment"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="China: the East China Sea"
                     /lat_lon="30.9864 N 122.2782 E"
                     /collection_date="2021-04-27"
                     /metagenome_source="estuary metagenome"
                     /metagenomic
WGS         JAILWM010000001-JAILWM010000008
WGS_SCAFLD  NZ_JAILWM010000001-NZ_JAILWM010000008
//
LOCUS       NZ_JALVTG010000000   1752656 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate M1_metabat1_scaf2bin.017, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALVTG000000000
VERSION     NZ_JALVTG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27360292
            Assembly: GCF_027024105.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1752656)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752656)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALVTG000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALVTG000000000.  This version of the project
            (01) has the accession number NZ_JALVTG010000000, and consists of
            sequences JALVTG010000001-JALVTG010000107.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28.21x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027024105.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:14:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,977
            CDSs (with protein)               :: 1,977
            Genes (RNA)                       :: 48
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 14 of 62
            Pseudo Genes (incomplete)         :: 45 of 62
            Pseudo Genes (internal stop)      :: 4 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752656
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="M1_metabat1_scaf2bin.017"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2015"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALVTG010000001-JALVTG010000107
WGS_SCAFLD  NZ_JALVTG010000001-NZ_JALVTG010000107
//
LOCUS       NZ_JALUWQ010000000   1949838 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate 131-447_maxbin2_scaf2bin.076, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALUWQ000000000
VERSION     NZ_JALUWQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27359704
            Assembly: GCF_027019385.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1949838)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949838)
  AUTHORS   Reysenbach,A.-L., Anantharaman,K., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALUWQ000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALUWQ000000000.  This version of the project
            (01) has the accession number NZ_JALUWQ010000000, and consists of
            sequences JALUWQ010000001-JALUWQ010000110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.53x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027019385.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:20:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,262
            CDSs (total)                      :: 2,208
            Genes (coding)                    :: 2,151
            CDSs (with protein)               :: 2,151
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 19 of 57
            Pseudo Genes (incomplete)         :: 40 of 57
            Pseudo Genes (internal stop)      :: 4 of 57
            Pseudo Genes (multiple problems)  :: 6 of 57
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949838
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="131-447_maxbin2_scaf2bin.076"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2005"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALUWQ010000001-JALUWQ010000110
WGS_SCAFLD  NZ_JALUWQ010000001-NZ_JALUWQ010000110
//
LOCUS       NZ_JASFYE010000000   1667441 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Methanothermobacter sp. isolate GMQ_75_MeOH_H2_bin_21, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JASFYE000000000
VERSION     NZ_JASFYE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34195776
            Assembly: GCF_030055425.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothermobacter sp. (hot springs metagenome)
  ORGANISM  Methanothermobacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1667441)
  AUTHORS   Hua,Z.-S.
  TITLE     Non-traditional mcr-containing archaea contribute to biological
            methanogenesis in geothermal springs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1667441)
  AUTHORS   Hua,Z.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2023) Department of Environmental Science and
            Engineering, University of Science and Technology of China, No. 96,
            JinZhai Road Baohe District, Hefei, Anhui 230026, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASFYE000000000.1.
            The Methanothermobacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JASFYE000000000.  This version of the
            project (01) has the accession number NZ_JASFYE010000000, and
            consists of sequences JASFYE010000001-JASFYE010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 445.2x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030055425.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:57:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,800
            CDSs (total)                      :: 1,758
            Genes (coding)                    :: 1,751
            CDSs (with protein)               :: 1,751
            Genes (RNA)                       :: 42
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 1 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667441
                     /organism="Methanothermobacter sp."
                     /mol_type="genomic DNA"
                     /isolate="GMQ_75_MeOH_H2_bin_21"
                     /isolation_source="enrichment culture inoculated with
                     sediment from GuMingQuan pool was maintained at 75 degree"
                     /db_xref="taxon:1884223"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, GuMingQuan
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2021-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JASFYE010000001-JASFYE010000012
WGS_SCAFLD  NZ_JASFYE010000001-NZ_JASFYE010000012
//
LOCUS       NZ_JASFYG010000000   1669522 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Methanothermobacter sp. isolate JZ-3_D_bin_25, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JASFYG000000000
VERSION     NZ_JASFYG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34195774
            Assembly: GCF_030055435.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothermobacter sp. (hot springs metagenome)
  ORGANISM  Methanothermobacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1669522)
  AUTHORS   Hua,Z.-S.
  TITLE     Non-traditional mcr-containing archaea contribute to biological
            methanogenesis in geothermal springs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1669522)
  AUTHORS   Hua,Z.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2023) Department of Environmental Science and
            Engineering, University of Science and Technology of China, No. 96,
            JinZhai Road Baohe District, Hefei, Anhui 230026, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASFYG000000000.1.
            The Methanothermobacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JASFYG000000000.  This version of the
            project (01) has the accession number NZ_JASFYG010000000, and
            consists of sequences JASFYG010000001-JASFYG010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 762.8x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030055435.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:58:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,809
            CDSs (total)                      :: 1,765
            Genes (coding)                    :: 1,755
            CDSs (with protein)               :: 1,755
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 4 of 10
            Pseudo Genes (incomplete)         :: 7 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669522
                     /organism="Methanothermobacter sp."
                     /mol_type="genomic DNA"
                     /isolate="JZ-3_D_bin_25"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1884223"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, JinZe-3
                     pool"
                     /lat_lon="25.44 N 98.46 E"
                     /collection_date="2021-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JASFYG010000001-JASFYG010000010
WGS_SCAFLD  NZ_JASFYG010000001-NZ_JASFYG010000010
//
LOCUS       NZ_JAQXYC010000000   1623955 bp    DNA     linear   ENV 18-JUL-2024
DEFINITION  MAG: Methanosphaera sp. isolate SUG2189, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQXYC000000000
VERSION     NZ_JAQXYC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32899615
            Assembly: GCF_029226445.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera sp. (pig gut metagenome)
  ORGANISM  Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1623955)
  AUTHORS   Holman,D.B., Gzyl,K.E. and Kommadath,A.
  TITLE     Metagenome-assembled genomes from pasture and conventional swine
            fecal metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1623955)
  AUTHORS   Holman,D.B., Gzyl,K.E. and Kommadath,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2023) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQXYC000000000.1.
            The Methanosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQXYC000000000.  This version of the project
            (01) has the accession number NZ_JAQXYC010000000, and consists of
            sequences JAQXYC010000001-JAQXYC010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 21-APR-2022
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34.932476x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029226445.1-RS_2024_07_18
            Annotation Date                   :: 07/18/2024 03:51:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,495
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,436
            CDSs (with protein)               :: 1,436
            Genes (RNA)                       :: 50
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 2 of 9
            Pseudo Genes (incomplete)         :: 6 of 9
            Pseudo Genes (internal stop)      :: 1 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623955
                     /organism="Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="SUG2189"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:2666342"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2018"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JAQXYC010000001-JAQXYC010000005
WGS_SCAFLD  NZ_JAQXYC010000001-NZ_JAQXYC010000005
//
LOCUS       NZ_CACVXI010000000   2220636 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10318, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACVXI000000000
VERSION     NZ_CACVXI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6148451
            Assembly: GCF_902758075.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2220636)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACVXI000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACVXI000000000.  This version
            of the project (01) has the accession number NZ_CACVXI010000000,
            and consists of sequences CACVXI010000001-CACVXI010000098.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902758075.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 01:17:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,143
            CDSs (total)                      :: 2,115
            Genes (coding)                    :: 2,061
            CDSs (with protein)               :: 2,061
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 25
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 30 of 54
            Pseudo Genes (incomplete)         :: 23 of 54
            Pseudo Genes (internal stop)      :: 3 of 54
            Pseudo Genes (multiple problems)  :: 1 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220636
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10318"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACVXI010000001-CACVXI010000098
WGS_SCAFLD  NZ_CACVXI010000001-NZ_CACVXI010000098
//
LOCUS       NZ_SUTM01000000      2499225 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate SIG20, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SUTM00000000
VERSION     NZ_SUTM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11294305
            Assembly: GCF_015062935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (feces metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2499225)
  AUTHORS   Peng,X.
  TITLE     Evolution of Biomass-Degrading Anaerobic Consortia Revealed by
            Metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2499225)
  AUTHORS   Peng,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2019) Chemical Engineering, University of
            California, Santa Barbara, 3357 Engineering II, University of
            California, Santa Barbara, CA 93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SUTM00000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_SUTM00000000.  This version of the project
            (01) has the accession number NZ_SUTM01000000, and consists of
            sequences SUTM01000001-SUTM01000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 41.2475x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015062935.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 01:34:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,416
            CDSs (total)                      :: 2,381
            Genes (coding)                    :: 2,361
            CDSs (with protein)               :: 2,361
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 4 of 20
            Pseudo Genes (incomplete)         :: 13 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499225
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SIG20"
                     /isolation_source="feces"
                     /host="San Clemente Island Goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="USA: Santa Barbara Zoo"
                     /lat_lon="34.4149 N 119.841 W"
                     /collection_date="2016-06-16"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         SUTM01000001-SUTM01000044
WGS_SCAFLD  NZ_SUTM01000001-NZ_SUTM01000044
//
LOCUS       NZ_CAMYVM010000000   1669840 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR10912534_bin.116_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMYVM000000000
VERSION     NZ_CAMYVM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111560309
            Sequence Read Archive: SRR10912534
            Assembly: GCF_947302395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobrevibacter sp. (sheep gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1669840)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMYVM000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAMYVM000000000.  This version
            of the project (01) has the accession number NZ_CAMYVM010000000,
            and consists of sequences CAMYVM010000001-CAMYVM010000119.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP141612.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR10912534.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_947302395.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 02:38:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,814
            CDSs (total)                      :: 1,777
            Genes (coding)                    :: 1,753
            CDSs (with protein)               :: 1,753
            Genes (RNA)                       :: 37
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 1 of 24
            Pseudo Genes (incomplete)         :: 24 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669840
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR10912534_bin.116_metaWRAP_v1.3_MAG"
                     /isolation_source="sheep gut metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="sheep gut metagenome"
                     /metagenomic
WGS         CAMYVM010000001-CAMYVM010000119
WGS_SCAFLD  NZ_CAMYVM010000001-NZ_CAMYVM010000119
//
LOCUS       NZ_CAMHFP010000000   2232857 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR11784285_bin.41_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMHFP000000000
VERSION     NZ_CAMHFP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110586516
            Sequence Read Archive: SRR11784285
            Assembly: GCF_946184425.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (sheep gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2232857)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMHFP000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAMHFP000000000.  This version
            of the project (01) has the accession number NZ_CAMHFP010000000,
            and consists of sequences CAMHFP010000001-CAMHFP010000083.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP139458.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR11784285.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_946184425.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 02:37:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,101
            CDSs (total)                      :: 2,067
            Genes (coding)                    :: 2,050
            CDSs (with protein)               :: 2,050
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 2 of 17
            Pseudo Genes (incomplete)         :: 15 of 17
            Pseudo Genes (internal stop)      :: 2 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232857
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR11784285_bin.41_metaWRAP_v1.3_MAG"
                     /isolation_source="sheep gut metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="sheep gut metagenome"
                     /metagenomic
WGS         CAMHFP010000001-CAMHFP010000083
WGS_SCAFLD  NZ_CAMHFP010000001-NZ_CAMHFP010000083
//
LOCUS       NZ_CAMVEE010000000   1719883 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR8387718_bin.72_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMVEE000000000
VERSION     NZ_CAMVEE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111499060
            Sequence Read Archive: SRR8387718
            Assembly: GCF_947166415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobrevibacter sp. (sheep gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1719883)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMVEE000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAMVEE000000000.  This version
            of the project (01) has the accession number NZ_CAMVEE010000000,
            and consists of sequences CAMVEE010000001-CAMVEE010000062.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP141523.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR8387718.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_947166415.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 02:36:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,777
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 27
            tRNAs                             :: 25
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 3 of 25
            Pseudo Genes (incomplete)         :: 21 of 25
            Pseudo Genes (internal stop)      :: 5 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719883
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR8387718_bin.72_metaWRAP_v1.3_MAG"
                     /isolation_source="sheep gut metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="sheep gut metagenome"
                     /metagenomic
WGS         CAMVEE010000001-CAMVEE010000062
WGS_SCAFLD  NZ_CAMVEE010000001-NZ_CAMVEE010000062
//
LOCUS       NZ_JALSLB010000000   1972058 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate 355-202_metabat1_scaf2bin.035, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALSLB000000000
VERSION     NZ_JALSLB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27357778
            Assembly: GCF_026988555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1972058)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1972058)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALSLB000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALSLB000000000.  This version of the project
            (01) has the accession number NZ_JALSLB010000000, and consists of
            sequences JALSLB010000001-JALSLB010000068.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.12x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026988555.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 02:39:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,244
            CDSs (total)                      :: 2,190
            Genes (coding)                    :: 2,146
            CDSs (with protein)               :: 2,146
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 13 of 44
            Pseudo Genes (incomplete)         :: 29 of 44
            Pseudo Genes (internal stop)      :: 7 of 44
            Pseudo Genes (multiple problems)  :: 4 of 44
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972058
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="355-202_metabat1_scaf2bin.035"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Atlantic Ocean: Mid Atlantic Ridge"
                     /collection_date="2008"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALSLB010000001-JALSLB010000068
WGS_SCAFLD  NZ_JALSLB010000001-NZ_JALSLB010000068
//
LOCUS       NZ_JALWKT010000000   1689044 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate M17_metabat2_scaf2bin.011, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALWKT000000000
VERSION     NZ_JALWKT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27360503
            Assembly: GCF_027081315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1689044)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689044)
  AUTHORS   Reysenbach,A.-L., Anantharaman,K., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALWKT000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALWKT000000000.  This version of the project
            (01) has the accession number NZ_JALWKT010000000, and consists of
            sequences JALWKT010000001-JALWKT010000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 193.48x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027081315.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 02:41:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,939
            CDSs (total)                      :: 1,887
            Genes (coding)                    :: 1,862
            CDSs (with protein)               :: 1,862
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 11 of 25
            Pseudo Genes (incomplete)         :: 13 of 25
            Pseudo Genes (internal stop)      :: 3 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689044
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="M17_metabat2_scaf2bin.011"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2015"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALWKT010000001-JALWKT010000018
WGS_SCAFLD  NZ_JALWKT010000001-NZ_JALWKT010000018
//
LOCUS       NZ_JALXBJ010000000   1994427 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate T2_metabat2_scaf2bin.092, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALXBJ000000000
VERSION     NZ_JALXBJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27361179
            Assembly: GCF_026991495.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1994427)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994427)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALXBJ000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALXBJ000000000.  This version of the project
            (01) has the accession number NZ_JALXBJ010000000, and consists of
            sequences JALXBJ010000001-JALXBJ010000092.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.88x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026991495.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 02:41:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,264
            CDSs (total)                      :: 2,214
            Genes (coding)                    :: 2,159
            CDSs (with protein)               :: 2,159
            Genes (RNA)                       :: 50
            rRNAs                             :: 3, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 7 of 55
            Pseudo Genes (incomplete)         :: 50 of 55
            Pseudo Genes (internal stop)      :: 2 of 55
            Pseudo Genes (multiple problems)  :: 4 of 55
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994427
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="T2_metabat2_scaf2bin.092"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2015"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALXBJ010000001-JALXBJ010000092
WGS_SCAFLD  NZ_JALXBJ010000001-NZ_JALXBJ010000092
//
LOCUS       NZ_JALVUC010000000   1917376 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate M1_metabat2_scaf2bin.057, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALVUC000000000
VERSION     NZ_JALVUC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27360314
            Assembly: GCF_027023865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1917376)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917376)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALVUC000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALVUC000000000.  This version of the project
            (01) has the accession number NZ_JALVUC010000000, and consists of
            sequences JALVUC010000001-JALVUC010000026.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 769.1x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027023865.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 02:41:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,203
            CDSs (total)                      :: 2,151
            Genes (coding)                    :: 2,104
            CDSs (with protein)               :: 2,104
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 22 of 47
            Pseudo Genes (incomplete)         :: 28 of 47
            Pseudo Genes (internal stop)      :: 5 of 47
            Pseudo Genes (multiple problems)  :: 8 of 47
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917376
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="M1_metabat2_scaf2bin.057"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Lau Basin"
                     /collection_date="2015"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALVUC010000001-JALVUC010000026
WGS_SCAFLD  NZ_JALVUC010000001-NZ_JALVUC010000026
//
LOCUS       NZ_JALSZL010000000   1781993 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Thermococcus sp. isolate S012_metabat2_scaf2bin.036, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALSZL000000000
VERSION     NZ_JALSZL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27358426
            Assembly: GCF_027059365.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1781993)
  AUTHORS   Zhou,Z., St John,E., Anantharaman,K. and Reysenbach,A.L.
  TITLE     Global patterns of diversity and metabolism of microbial
            communities in deep-sea hydrothermal vent deposits
  JOURNAL   Microbiome 10 (1), 241 (2022)
   PUBMED   36572924
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781993)
  AUTHORS   Anantharaman,K., Reysenbach,A.-L., Zhou,Z. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALSZL000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JALSZL000000000.  This version of the project
            (01) has the accession number NZ_JALSZL010000000, and consists of
            sequences JALSZL010000001-JALSZL010000107.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.66x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027059365.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 02:43:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,115
            CDSs (total)                      :: 2,067
            Genes (coding)                    :: 2,007
            CDSs (with protein)               :: 2,007
            Genes (RNA)                       :: 48
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 4 of 60
            Pseudo Genes (incomplete)         :: 56 of 60
            Pseudo Genes (internal stop)      :: 4 of 60
            Pseudo Genes (multiple problems)  :: 4 of 60
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781993
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S012_metabat2_scaf2bin.036"
                     /isolation_source="marine hydrothermal vent"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean: Brothers volcano"
                     /collection_date="2018"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         JALSZL010000001-JALSZL010000107
WGS_SCAFLD  NZ_JALSZL010000001-NZ_JALSZL010000107
//
LOCUS       NZ_JANQTA010000000   1690937 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate IP29b_bin.65, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANQTA000000000
VERSION     NZ_JANQTA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29486824
            Assembly: GCF_028278985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (coral metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1690937)
  AUTHORS   Tandon,K., Ricci,F., Costa,J., Medina,M., Kuhl,M., Blackall,L.L.
            and Verbruggen,H.
  TITLE     Genomic view of the diversity and functional role of archaea and
            bacteria in the skeleton of the reef-building corals Porites lutea
            and Isopora palifera
  JOURNAL   Gigascience 12 (2022)
   PUBMED   36683362
REFERENCE   2  (bases 1 to 1690937)
  AUTHORS   Tandon,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2022) School of BioSciences, The University of
            Melbourne, Biosciences 2, The Royal Parade, Melbourne 3052,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANQTA000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JANQTA000000000.  This version of the project
            (01) has the accession number NZ_JANQTA010000000, and consists of
            sequences JANQTA010000001-JANQTA010000032.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MegaHIT v. v1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.6843076x
            Sequencing Technology  :: DNBSEQ
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028278985.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 03:02:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,086
            CDSs (total)                      :: 2,037
            Genes (coding)                    :: 2,025
            CDSs (with protein)               :: 2,025
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 0 of 12
            Pseudo Genes (incomplete)         :: 12 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690937
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="IP29b_bin.65"
                     /isolation_source="Coral skeleton"
                     /host="Isopora palifera"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="Australia: Heron Island"
                     /lat_lon="23.44 S 151.91 E"
                     /collection_date="2020-01"
                     /metagenome_source="coral metagenome"
                     /metagenomic
WGS         JANQTA010000001-JANQTA010000032
WGS_SCAFLD  NZ_JANQTA010000001-NZ_JANQTA010000032
//
LOCUS       NZ_JAJRBM010000000   3098146 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Methanospirillum sp. isolate OWC_0038, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJRBM000000000
VERSION     NZ_JAJRBM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23830037
            Assembly: GCF_028679455.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanospirillum sp. (wetland metagenome)
  ORGANISM  Methanospirillum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 3098146)
  AUTHORS   Narrowe,A.B., Borton,M.A., Liu,P., Daly,R.A., Nikulkova,M.,
            Miller,C.S. and Wrighton,K.C.
  TITLE     Old Woman Creek methane-cycling MAG database
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3098146)
  AUTHORS   Narrowe,A.B., Borton,M.A., Liu,P., Daly,R.A., Nikulkova,M.,
            Miller,C.S. and Wrighton,K.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2021) Department of Soil and Crop Sciences,
            Colorado State University, 307 University Avenue, Fort Collins, CO
            80523, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJRBM000000000.1.
            The Methanospirillum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAJRBM000000000.  This version of the project
            (01) has the accession number NZ_JAJRBM010000000, and consists of
            sequences JAJRBM010000001-JAJRBM010000462.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028679455.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 03:15:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,202
            CDSs (total)                      :: 3,158
            Genes (coding)                    :: 3,061
            CDSs (with protein)               :: 3,061
            Genes (RNA)                       :: 44
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 4 of 97
            Pseudo Genes (incomplete)         :: 89 of 97
            Pseudo Genes (internal stop)      :: 7 of 97
            Pseudo Genes (multiple problems)  :: 3 of 97
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3098146
                     /organism="Methanospirillum sp."
                     /mol_type="genomic DNA"
                     /isolate="OWC_0038"
                     /isolation_source="freshwater wetland soil"
                     /db_xref="taxon:45200"
                     /environmental_sample
                     /geo_loc_name="USA: Ohio, Old Woman Creek NERR"
                     /lat_lon="41.377788 N 82.510793 W"
                     /collection_date="2013-10"
                     /metagenome_source="wetland metagenome"
                     /metagenomic
WGS         JAJRBM010000001-JAJRBM010000462
WGS_SCAFLD  NZ_JAJRBM010000001-NZ_JAJRBM010000462
//
LOCUS       NZ_JAQUVZ010000000   4219459 bp    DNA     linear   ENV 19-JUL-2024
DEFINITION  MAG: Methanosarcina sp. isolate STD2_179, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQUVZ000000000
VERSION     NZ_JAQUVZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32734503
            Assembly: GCF_028693135.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosarcina sp. (landfill metagenome)
  ORGANISM  Methanosarcina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4219459)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4219459)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQUVZ000000000.1.
            The Methanosarcina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQUVZ000000000.  This version of the project
            (01) has the accession number NZ_JAQUVZ010000000, and consists of
            sequences JAQUVZ010000001-JAQUVZ010000089.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.25x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028693135.1-RS_2024_07_19
            Annotation Date                   :: 07/19/2024 03:16:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,622
            CDSs (total)                      :: 3,563
            Genes (coding)                    :: 3,475
            CDSs (with protein)               :: 3,475
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 17 of 88
            Pseudo Genes (incomplete)         :: 70 of 88
            Pseudo Genes (internal stop)      :: 23 of 88
            Pseudo Genes (multiple problems)  :: 18 of 88
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4219459
                     /organism="Methanosarcina sp."
                     /mol_type="genomic DNA"
                     /isolate="STD2_179"
                     /isolation_source="NEUS_D2 leachate from a leachate well
                     at an active municipal landfill in the North Eastern
                     United States"
                     /db_xref="taxon:2213"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAQUVZ010000001-JAQUVZ010000089
WGS_SCAFLD  NZ_JAQUVZ010000001-NZ_JAQUVZ010000089
//
LOCUS       NZ_JAXGML010000000   2244013 bp    DNA     linear   ENV 20-JUL-2024
DEFINITION  MAG: Methanomethylovorans sp. isolate AnMBR.bin231, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXGML000000000
VERSION     NZ_JAXGML000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38439004
            Assembly: GCF_040768725.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanomethylovorans sp. (anaerobic digester metagenome)
  ORGANISM  Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2244013)
  AUTHORS   Yan,W., Wang,D., Wang,Y., Wang,C., Chen,X., Liu,L., Wang,Y.,
            Li,Y.Y., Kamagata,Y., Nobu,M.K. and Zhang,T.
  TITLE     Metatranscriptomics-guided genome-scale metabolic reconstruction
            reveals the carbon flux and trophic interaction in methanogenic
            communities
  JOURNAL   Microbiome 12 (1), 121 (2024)
   PUBMED   38970122
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244013)
  AUTHORS   Yan,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2023) Department of Civil Engineering, The
            University of Hong Kong, Pokfulam, Hong Kong 999077, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXGML000000000.1.
            The Methanomethylovorans sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAXGML000000000.  This version of the
            project (01) has the accession number NZ_JAXGML010000000, and
            consists of sequence JAXGML010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. v2.9-b1768
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 49x
            Sequencing Technology  :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040768725.1-RS_2024_07_20
            Annotation Date                   :: 07/20/2024 10:32:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,139
            CDSs (total)                      :: 2,083
            Genes (coding)                    :: 2,061
            CDSs (with protein)               :: 2,061
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 8 of 22
            Pseudo Genes (incomplete)         :: 10 of 22
            Pseudo Genes (internal stop)      :: 7 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244013
                     /organism="Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="AnMBR.bin231"
                     /isolation_source="AnMBR reactor"
                     /db_xref="taxon:2758717"
                     /environmental_sample
                     /geo_loc_name="China: Hong Kong"
                     /lat_lon="22.2827 N 114.1368 E"
                     /collection_date="2021-06-20"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JAXGML010000001
WGS_SCAFLD  NZ_JAXGML010000001
//
LOCUS       NZ_JAXGLJ010000000   2864155 bp    DNA     linear   ENV 20-JUL-2024
DEFINITION  MAG: Methanothrix sp. isolate AnMBR.bin206, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXGLJ000000000
VERSION     NZ_JAXGLJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38438976
            Assembly: GCF_040769265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (anaerobic digester metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2864155)
  AUTHORS   Yan,W., Wang,D., Wang,Y., Wang,C., Chen,X., Liu,L., Wang,Y.,
            Li,Y.Y., Kamagata,Y., Nobu,M.K. and Zhang,T.
  TITLE     Metatranscriptomics-guided genome-scale metabolic reconstruction
            reveals the carbon flux and trophic interaction in methanogenic
            communities
  JOURNAL   Microbiome 12 (1), 121 (2024)
   PUBMED   38970122
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2864155)
  AUTHORS   Yan,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2023) Department of Civil Engineering, The
            University of Hong Kong, Pokfulam, Hong Kong 999077, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXGLJ000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAXGLJ000000000.  This version of the project
            (01) has the accession number NZ_JAXGLJ010000000, and consists of
            sequences JAXGLJ010000001-JAXGLJ010000036.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. v2.9-b1768
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 878x
            Sequencing Technology  :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040769265.1-RS_2024_07_20
            Annotation Date                   :: 07/20/2024 11:26:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,979
            CDSs (total)                      :: 2,928
            Genes (coding)                    :: 2,870
            CDSs (with protein)               :: 2,870
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 22 of 58
            Pseudo Genes (incomplete)         :: 42 of 58
            Pseudo Genes (internal stop)      :: 7 of 58
            Pseudo Genes (multiple problems)  :: 12 of 58
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2864155
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="AnMBR.bin206"
                     /isolation_source="AnMBR reactor"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="China: Hong Kong"
                     /lat_lon="22.2827 N 114.1368 E"
                     /collection_date="2021-06-20"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JAXGLJ010000001-JAXGLJ010000036
WGS_SCAFLD  NZ_JAXGLJ010000001-NZ_JAXGLJ010000036
//
LOCUS       NZ_JAXGZH010000000   2539267 bp    DNA     linear   ENV 20-JUL-2024
DEFINITION  MAG: Methanothrix sp. isolate AnMBR.bin532, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXGZH000000000
VERSION     NZ_JAXGZH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38439343
            Assembly: GCF_040771845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (anaerobic digester metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2539267)
  AUTHORS   Yan,W., Wang,D., Wang,Y., Wang,C., Chen,X., Liu,L., Wang,Y.,
            Li,Y.Y., Kamagata,Y., Nobu,M.K. and Zhang,T.
  TITLE     Metatranscriptomics-guided genome-scale metabolic reconstruction
            reveals the carbon flux and trophic interaction in methanogenic
            communities
  JOURNAL   Microbiome 12 (1), 121 (2024)
   PUBMED   38970122
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539267)
  AUTHORS   Yan,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2023) Department of Civil Engineering, The
            University of Hong Kong, Pokfulam, Hong Kong 999077, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXGZH000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAXGZH000000000.  This version of the project
            (01) has the accession number NZ_JAXGZH010000000, and consists of
            sequence JAXGZH010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. v2.9-b1768
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 229x
            Sequencing Technology  :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040771845.1-RS_2024_07_20
            Annotation Date                   :: 07/20/2024 11:24:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,490
            CDSs (total)                      :: 2,435
            Genes (coding)                    :: 2,392
            CDSs (with protein)               :: 2,392
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 17 of 43
            Pseudo Genes (incomplete)         :: 33 of 43
            Pseudo Genes (internal stop)      :: 12 of 43
            Pseudo Genes (multiple problems)  :: 15 of 43
            CRISPR Arrays                     :: 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539267
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="AnMBR.bin532"
                     /isolation_source="Anaerobic reactor"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="China: Hong Kong"
                     /lat_lon="22.2827 N 114.1368 E"
                     /collection_date="2021-06-20"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JAXGZH010000001
WGS_SCAFLD  NZ_JAXGZH010000001
//
LOCUS       NZ_BBDN01000000      2249042 bp    DNA     linear   BCT 24-JUL-2024
DEFINITION  Vulcanisaeta sp. JCM 16159, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBDN00000000
VERSION     NZ_BBDN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000531
            Sequence Read Archive: DRR017732
            Assembly: GCF_001316265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta sp. JCM 16159
  ORGANISM  Vulcanisaeta sp. JCM 16159
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2249042)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBDN00000000.1.
            The Vulcanisaeta sp. JCM 16159 whole genome shotgun (WGS) project
            has the project accession NZ_BBDN00000000.  This version of the
            project (01) has the accession number NZ_BBDN01000000, and consists
            of sequences BBDN01000001-BBDN01000028.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 51x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316265.1-RS_2024_07_24
            Annotation Date                   :: 07/24/2024 01:22:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,373
            CDSs (total)                      :: 3,324
            Genes (coding)                    :: 2,928
            CDSs (with protein)               :: 2,928
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 396
            CDSs (without protein)            :: 396
            Pseudo Genes (ambiguous residues) :: 0 of 396
            Pseudo Genes (frameshifted)       :: 359 of 396
            Pseudo Genes (incomplete)         :: 61 of 396
            Pseudo Genes (internal stop)      :: 13 of 396
            Pseudo Genes (multiple problems)  :: 36 of 396
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249042
                     /organism="Vulcanisaeta sp. JCM 16159"
                     /mol_type="genomic DNA"
                     /strain="JCM 16159"
                     /culture_collection="JCM:16159"
                     /db_xref="taxon:1295371"
WGS         BBDN01000001-BBDN01000028
WGS_SCAFLD  NZ_BBDN01000001-NZ_BBDN01000028
//
LOCUS       NZ_JBBECB010000000   1744171 bp    DNA     linear   ENV 27-JUL-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate LejiaF_33_100, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBECB000000000
VERSION     NZ_JBBECB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39963673
            Assembly: GCF_040882045.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (sediment metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1744171)
  AUTHORS   Lezcano,M.A., Bornemann,T.L.V., Sanchez-Garcia,L., Carrizo,D.,
            Adam,P.S., Esser,S.P., Cabrol,N.A., Probst,A.J. and Parro,V.
  TITLE     Hyperexpansion of genetic diversity and metabolic capacity of
            extremophilic bacteria and archaea in ancient Andean lake sediments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1744171)
  AUTHORS   Lezcano,M.A., Bornemann,T.L.V., Probst,A.J. and Parro,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2024) Molecular Evolution, Centro de
            Astrobiologia, Carretera de Ajalvir, km 4, Torrejon de Ardoz,
            Madrid 28850, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBECB000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBBECB000000000.  This version of the project
            (01) has the accession number NZ_JBBECB010000000, and consists of
            sequences JBBECB010000001-JBBECB010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: MetaSPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040882045.1-RS_2024_07_27
            Annotation Date                   :: 07/27/2024 04:51:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,126
            CDSs (total)                      :: 2,077
            Genes (coding)                    :: 2,064
            CDSs (with protein)               :: 2,064
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 0 of 13
            Pseudo Genes (incomplete)         :: 13 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744171
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="LejiaF_33_100"
                     /isolation_source="Sediment layer of the Laguna Lejia
                     terrace"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="Chile: Laguna Lejia, Altiplano, Andes"
                     /lat_lon="23.5 S 67.7 W"
                     /collection_date="2018-11"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JBBECB010000001-JBBECB010000010
WGS_SCAFLD  NZ_JBBECB010000001-NZ_JBBECB010000010
//
LOCUS       NZ_JBBDLU010000000   1775694 bp    DNA     linear   ENV 27-JUL-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate LejiaA_33_50, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBDLU000000000
VERSION     NZ_JBBDLU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39963232
            Assembly: GCF_040878665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (sediment metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1775694)
  AUTHORS   Lezcano,M.A., Bornemann,T.L.V., Sanchez-Garcia,L., Carrizo,D.,
            Adam,P.S., Esser,S.P., Cabrol,N.A., Probst,A.J. and Parro,V.
  TITLE     Hyperexpansion of genetic diversity and metabolic capacity of
            extremophilic bacteria and archaea in ancient Andean lake sediments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1775694)
  AUTHORS   Lezcano,M.A., Bornemann,T.L.V., Probst,A.J. and Parro,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2024) Molecular Evolution, Centro de
            Astrobiologia, Carretera de Ajalvir, km 4, Torrejon de Ardoz,
            Madrid 28850, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBDLU000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBBDLU000000000.  This version of the project
            (01) has the accession number NZ_JBBDLU010000000, and consists of
            sequences JBBDLU010000001-JBBDLU010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: MetaSPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040878665.1-RS_2024_07_27
            Annotation Date                   :: 07/27/2024 04:47:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,170
            CDSs (total)                      :: 2,121
            Genes (coding)                    :: 2,109
            CDSs (with protein)               :: 2,109
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 0 of 12
            Pseudo Genes (incomplete)         :: 12 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775694
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="LejiaA_33_50"
                     /isolation_source="Sediment layer of the Laguna Lejia
                     terrace"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="Chile: Laguna Lejia, Altiplano, Andes"
                     /lat_lon="23.5 S 67.7 W"
                     /collection_date="2018-11"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JBBDLU010000001-JBBDLU010000009
WGS_SCAFLD  NZ_JBBDLU010000001-NZ_JBBDLU010000009
//
LOCUS       NZ_JBBDVW010000000   1739838 bp    DNA     linear   ENV 29-JUL-2024
DEFINITION  MAG: Nitrosopumilus sp. isolate LejiaC_33_18, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBDVW000000000
VERSION     NZ_JBBDVW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39963512
            Assembly: GCF_040903195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (sediment metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1739838)
  AUTHORS   Lezcano,M.A., Bornemann,T.L.V., Sanchez-Garcia,L., Carrizo,D.,
            Adam,P.S., Esser,S.P., Cabrol,N.A., Probst,A.J. and Parro,V.
  TITLE     Hyperexpansion of genetic diversity and metabolic capacity of
            extremophilic bacteria and archaea in ancient Andean lake sediments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1739838)
  AUTHORS   Lezcano,M.A., Bornemann,T.L.V., Probst,A.J. and Parro,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2024) Molecular Evolution, Centro de
            Astrobiologia, Carretera de Ajalvir, km 4, Torrejon de Ardoz,
            Madrid 28850, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBDVW000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBBDVW000000000.  This version of the project
            (01) has the accession number NZ_JBBDVW010000000, and consists of
            sequences JBBDVW010000001-JBBDVW010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: MetaSPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040903195.1-RS_2024_07_29
            Annotation Date                   :: 07/29/2024 11:44:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,128
            CDSs (total)                      :: 2,081
            Genes (coding)                    :: 2,067
            CDSs (with protein)               :: 2,067
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 0 of 14
            Pseudo Genes (incomplete)         :: 14 of 14
            Pseudo Genes (internal stop)      :: 0 of 14
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739838
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="LejiaC_33_18"
                     /isolation_source="Sediment layer of the Laguna Lejia
                     terrace"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="Chile: Laguna Lejia, Altiplano, Andes"
                     /lat_lon="23.5 S 67.7 W"
                     /collection_date="2018-11"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JBBDVW010000001-JBBDVW010000019
WGS_SCAFLD  NZ_JBBDVW010000001-NZ_JBBDVW010000019
//
LOCUS       NZ_CAUHKU010000000   1551829 bp    DNA     linear   ENV 31-JUL-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate
            SRR16280058_bin.44_MetaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAUHKU000000000
VERSION     NZ_CAUHKU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114122528
            Sequence Read Archive: SRR16280058
            Assembly: GCF_959607185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobrevibacter sp. (human feces metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1551829)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2023) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAUHKU000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAUHKU000000000.  This version
            of the project (01) has the accession number NZ_CAUHKU010000000,
            and consists of sequences CAUHKU010000001-CAUHKU010000048.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set SRP340671.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR16280058.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_959607185.1-RS_2024_07_31
            Annotation Date                   :: 07/31/2024 06:42:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,619
            CDSs (total)                      :: 1,583
            Genes (coding)                    :: 1,561
            CDSs (with protein)               :: 1,561
            Genes (RNA)                       :: 36
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 1 of 22
            Pseudo Genes (incomplete)         :: 21 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551829
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SRR16280058_bin.44_MetaWRAP_v1.3_MAG"
                     /isolation_source="human feces metagenome"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="human feces metagenome"
                     /metagenomic
WGS         CAUHKU010000001-CAUHKU010000048
WGS_SCAFLD  NZ_CAUHKU010000001-NZ_CAUHKU010000048
//
LOCUS       NZ_JAUNXX010000000   2079934 bp    DNA     linear   ENV 31-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate S6M_St_15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAUNXX000000000
VERSION     NZ_JAUNXX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36400722
            Assembly: GCF_030539555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (feces metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2079934)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Between Cages and Wild: Unraveling the Impact of Captivity on
            Animal Microbiomes and Antimicrobial Resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2079934)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2023) Chair for Clinical Bioinformatics, Center
            for Bioinformatics, Uni-Campus N, E2.1, Saarbruecken, Saarland
            66123, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUNXX000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAUNXX000000000.  This version of the
            project (01) has the accession number NZ_JAUNXX010000000, and
            consists of sequences JAUNXX010000001-JAUNXX010000148.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.93881178493302x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030539555.1-RS_2024_07_31
            Annotation Date                   :: 07/31/2024 06:51:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,134
            CDSs (total)                      :: 2,100
            Genes (coding)                    :: 2,047
            CDSs (with protein)               :: 2,047
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 3 of 53
            Pseudo Genes (incomplete)         :: 50 of 53
            Pseudo Genes (internal stop)      :: 3 of 53
            Pseudo Genes (multiple problems)  :: 3 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079934
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="S6M_St_15"
                     /isolation_source="feces"
                     /host="Giraffa camelopardalis"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Germany: Zoo Saarbruecken"
                     /lat_lon="49.2307 N 7.0407 E"
                     /collection_date="2022-01-21"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         JAUNXX010000001-JAUNXX010000148
WGS_SCAFLD  NZ_JAUNXX010000001-NZ_JAUNXX010000148
//
LOCUS       NZ_JAUNXH010000000   1620351 bp    DNA     linear   ENV 31-JUL-2024
DEFINITION  MAG: Methanosphaera sp. isolate S12M_St_24, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAUNXH000000000
VERSION     NZ_JAUNXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36400042
            Assembly: GCF_030539905.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera sp. (feces metagenome)
  ORGANISM  Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1620351)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Between Cages and Wild: Unraveling the Impact of Captivity on
            Animal Microbiomes and Antimicrobial Resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1620351)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2023) Chair for Clinical Bioinformatics, Center
            for Bioinformatics, Uni-Campus N, E2.1, Saarbruecken, Saarland
            66123, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUNXH000000000.1.
            The Methanosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAUNXH000000000.  This version of the project
            (01) has the accession number NZ_JAUNXH010000000, and consists of
            sequences JAUNXH010000001-JAUNXH010000095.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.8623949158108x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030539905.1-RS_2024_07_31
            Annotation Date                   :: 07/31/2024 06:50:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,563
            CDSs (total)                      :: 1,520
            Genes (coding)                    :: 1,501
            CDSs (with protein)               :: 1,501
            Genes (RNA)                       :: 43
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 4 of 19
            Pseudo Genes (incomplete)         :: 13 of 19
            Pseudo Genes (internal stop)      :: 3 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620351
                     /organism="Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="S12M_St_24"
                     /isolation_source="feces"
                     /host="Gorilla gorilla"
                     /db_xref="taxon:2666342"
                     /environmental_sample
                     /geo_loc_name="Germany: Zoo Saarbruecken"
                     /lat_lon="49.2307 N 7.0407 E"
                     /collection_date="2021-11-28"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         JAUNXH010000001-JAUNXH010000095
WGS_SCAFLD  NZ_JAUNXH010000001-NZ_JAUNXH010000095
//
LOCUS       NZ_JAUNXR010000000   1618714 bp    DNA     linear   ENV 31-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate S2A_St_19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAUNXR000000000
VERSION     NZ_JAUNXR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36400416
            Assembly: GCF_030539665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (feces metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1618714)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Between Cages and Wild: Unraveling the Impact of Captivity on
            Animal Microbiomes and Antimicrobial Resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1618714)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2023) Chair for Clinical Bioinformatics, Center
            for Bioinformatics, Uni-Campus N, E2.1, Saarbruecken, Saarland
            66123, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUNXR000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAUNXR000000000.  This version of the
            project (01) has the accession number NZ_JAUNXR010000000, and
            consists of sequences JAUNXR010000001-JAUNXR010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 124.868418001994x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030539665.1-RS_2024_07_31
            Annotation Date                   :: 07/31/2024 06:58:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,703
            CDSs (total)                      :: 1,668
            Genes (coding)                    :: 1,660
            CDSs (with protein)               :: 1,660
            Genes (RNA)                       :: 35
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 4 of 8
            Pseudo Genes (incomplete)         :: 2 of 8
            Pseudo Genes (internal stop)      :: 3 of 8
            Pseudo Genes (multiple problems)  :: 1 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618714
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="S2A_St_19"
                     /isolation_source="feces"
                     /host="Rhea americana"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Germany: Zoo Saarbruecken"
                     /lat_lon="49.2307 N 7.0407 E"
                     /collection_date="2022-01-20"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         JAUNXR010000001-JAUNXR010000013
WGS_SCAFLD  NZ_JAUNXR010000001-NZ_JAUNXR010000013
//
LOCUS       NZ_JAUNXI010000000   1820218 bp    DNA     linear   ENV 31-JUL-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate S12M_St_64, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAUNXI000000000
VERSION     NZ_JAUNXI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36400058
            Assembly: GCF_030539875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (feces metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1820218)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Between Cages and Wild: Unraveling the Impact of Captivity on
            Animal Microbiomes and Antimicrobial Resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1820218)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2023) Chair for Clinical Bioinformatics, Center
            for Bioinformatics, Uni-Campus N, E2.1, Saarbruecken, Saarland
            66123, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUNXI000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAUNXI000000000.  This version of the
            project (01) has the accession number NZ_JAUNXI010000000, and
            consists of sequences JAUNXI010000001-JAUNXI010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 23.3410809916668x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030539875.1-RS_2024_07_31
            Annotation Date                   :: 07/31/2024 06:58:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,855
            CDSs (total)                      :: 1,825
            Genes (coding)                    :: 1,809
            CDSs (with protein)               :: 1,809
            Genes (RNA)                       :: 30
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 24
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 2 of 16
            Pseudo Genes (incomplete)         :: 15 of 16
            Pseudo Genes (internal stop)      :: 1 of 16
            Pseudo Genes (multiple problems)  :: 2 of 16
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820218
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="S12M_St_64"
                     /isolation_source="feces"
                     /host="Gorilla gorilla"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Germany: Zoo Saarbruecken"
                     /lat_lon="49.2307 N 7.0407 E"
                     /collection_date="2021-11-28"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         JAUNXI010000001-JAUNXI010000040
WGS_SCAFLD  NZ_JAUNXI010000001-NZ_JAUNXI010000040
//
LOCUS       NZ_CAMFXU010000000   1470636 bp    DNA     linear   ENV 31-JUL-2024
DEFINITION  MAG: Methanobrevibacter gottschalkii isolate
            SRR12203196_bin.14_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMFXU000000000
VERSION     NZ_CAMFXU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110426238
            Sequence Read Archive: SRR12203196
            Assembly: GCF_946000995.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter gottschalkii (pig gut metagenome)
  ORGANISM  Methanobrevibacter gottschalkii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1470636)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMFXU000000000.1.
            The Methanobrevibacter gottschalkii whole genome shotgun (WGS)
            project has the project accession NZ_CAMFXU000000000.  This version
            of the project (01) has the accession number NZ_CAMFXU010000000,
            and consists of sequences CAMFXU010000001-CAMFXU010000117.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137804.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR12203196.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_946000995.1-RS_2024_07_31
            Annotation Date                   :: 07/31/2024 15:12:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,636
            CDSs (total)                      :: 1,601
            Genes (coding)                    :: 1,582
            CDSs (with protein)               :: 1,582
            Genes (RNA)                       :: 35
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 1 of 19
            Pseudo Genes (incomplete)         :: 17 of 19
            Pseudo Genes (internal stop)      :: 1 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1470636
                     /organism="Methanobrevibacter gottschalkii"
                     /mol_type="genomic DNA"
                     /isolate="SRR12203196_bin.14_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:190974"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMFXU010000001-CAMFXU010000117
WGS_SCAFLD  NZ_CAMFXU010000001-NZ_CAMFXU010000117
//
LOCUS       NZ_CACXTS010000000   2118224 bp    DNA     linear   ENV 07-AUG-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG11588, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACXTS000000000
VERSION     NZ_CACXTS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6149723
            Assembly: GCF_902770715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2118224)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACXTS000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACXTS000000000.  This version
            of the project (01) has the accession number NZ_CACXTS010000000,
            and consists of sequences CACXTS010000001-CACXTS010000086.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902770715.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 03:52:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,183
            CDSs (total)                      :: 2,150
            Genes (coding)                    :: 2,114
            CDSs (with protein)               :: 2,114
            Genes (RNA)                       :: 33
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 9 of 36
            Pseudo Genes (incomplete)         :: 27 of 36
            Pseudo Genes (internal stop)      :: 0 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118224
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG11588"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACXTS010000001-CACXTS010000086
WGS_SCAFLD  NZ_CACXTS010000001-NZ_CACXTS010000086
//
LOCUS       NZ_CACWAT010000000   2431500 bp    DNA     linear   ENV 07-AUG-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10414, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACWAT000000000
VERSION     NZ_CACWAT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6148547
            Assembly: GCF_902758945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2431500)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACWAT000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACWAT000000000.  This version
            of the project (01) has the accession number NZ_CACWAT010000000,
            and consists of sequences CACWAT010000001-CACWAT010000057.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902758945.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 03:48:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,342
            CDSs (total)                      :: 2,306
            Genes (coding)                    :: 2,262
            CDSs (with protein)               :: 2,262
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 16 of 44
            Pseudo Genes (incomplete)         :: 26 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2431500
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10414"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACWAT010000001-CACWAT010000057
WGS_SCAFLD  NZ_CACWAT010000001-NZ_CACWAT010000057
//
LOCUS       NZ_SNUS01000000      1921837 bp    DNA     linear   BCT 07-AUG-2024
DEFINITION  Thermococcus sp. 21S9, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUS00000000
VERSION     NZ_SNUS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963465
            Assembly: GCF_012027635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. 21S9
  ORGANISM  Thermococcus sp. 21S9
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1921837)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1921837)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUS00000000.1.
            The Thermococcus sp. 21S9 whole genome shotgun (WGS) project has
            the project accession NZ_SNUS00000000.  This version of the project
            (01) has the accession number NZ_SNUS01000000, and consists of
            sequences SNUS01000001-SNUS01000084.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 45x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027635.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 03:54:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,203
            CDSs (total)                      :: 2,151
            Genes (coding)                    :: 2,121
            CDSs (with protein)               :: 2,121
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 1 of 30
            Pseudo Genes (incomplete)         :: 29 of 30
            Pseudo Genes (internal stop)      :: 0 of 30
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921837
                     /organism="Thermococcus sp. 21S9"
                     /mol_type="genomic DNA"
                     /strain="21S9"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638223"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUS01000001-SNUS01000084
WGS_SCAFLD  NZ_SNUS01000001-NZ_SNUS01000084
//
LOCUS       NZ_SIJA01000000      1915262 bp    DNA     linear   BCT 07-AUG-2024
DEFINITION  Methanocorpusculum sp. GPch4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SIJA00000000
VERSION     NZ_SIJA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10960624
            Assembly: GCF_012062385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocorpusculum sp. GPch4
  ORGANISM  Methanocorpusculum sp. GPch4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanocorpusculum.
REFERENCE   1  (bases 1 to 1915262)
  AUTHORS   Yang,Y.
  TITLE     Draft genome sequence of Methanocorpusculum from Grape pomace
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1915262)
  AUTHORS   Yang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2019) Environmental Engineering, Institute of
            Applied Ecology (CAS), Wenhua Road #72, Shenyang, Liaoning 110016,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SIJA00000000.1.
            The Methanocorpusculum sp. GPch4 whole genome shotgun (WGS) project
            has the project accession NZ_SIJA00000000.  This version of the
            project (01) has the accession number NZ_SIJA01000000, and consists
            of sequences SIJA01000001-SIJA01000087.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: FEB-2019
            Assembly Method        :: MEGAHIT Galaxy v. 1.1.2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 93.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012062385.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 03:55:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,871
            CDSs (total)                      :: 1,815
            Genes (coding)                    :: 1,802
            CDSs (with protein)               :: 1,802
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 13 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915262
                     /organism="Methanocorpusculum sp. GPch4"
                     /mol_type="genomic DNA"
                     /strain="GPch4"
                     /isolation_source="soils"
                     /db_xref="taxon:2527877"
                     /geo_loc_name="Germany: Stuttgart"
                     /lat_lon="48.77 N 9.18 E"
                     /collection_date="2012"
WGS         SIJA01000001-SIJA01000087
WGS_SCAFLD  NZ_SIJA01000001-NZ_SIJA01000087
//
LOCUS       NZ_CAJODJ010000000   2391894 bp    DNA     linear   ENV 07-AUG-2024
DEFINITION  Methanobrevibacter sp. UBA212 isolate Sheep_1_mag_44, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAJODJ000000000
VERSION     NZ_CAJODJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8030122
            Assembly: GCF_905233225.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      Methanobrevibacter sp. UBA212
  ORGANISM  Methanobrevibacter sp. UBA212
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2391894)
  AUTHORS   Vasoya,D., Smith,R., Warr,A., Glendinning,L. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2021) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJODJ000000000.1.
            The Methanobrevibacter sp. UBA212 whole genome shotgun (WGS)
            project has the project accession NZ_CAJODJ000000000.  This version
            of the project (01) has the accession number NZ_CAJODJ010000000,
            and consists of sequences CAJODJ010000001-CAJODJ010000078.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905233225.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 04:21:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,274
            CDSs (total)                      :: 2,238
            Genes (coding)                    :: 2,202
            CDSs (with protein)               :: 2,202
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 16 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 2 of 36
            Pseudo Genes (multiple problems)  :: 2 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391894
                     /organism="Methanobrevibacter sp. UBA212"
                     /mol_type="genomic DNA"
                     /isolate="Sheep_1_mag_44"
                     /isolation_source="metagenome"
                     /db_xref="taxon:1915476"
                     /environmental_sample
WGS         CAJODJ010000001-CAJODJ010000078
WGS_SCAFLD  NZ_CAJODJ010000001-NZ_CAJODJ010000078
//
LOCUS       NZ_JAHENT010000000   2086548 bp    DNA     linear   ENV 07-AUG-2024
DEFINITION  MAG: Methanohalobium sp. isolate
            BinSanityLC-kmean-bin_14-bin_0-refined_8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHENT000000000
VERSION     NZ_JAHENT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19270127
            Assembly: GCF_018609725.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanohalobium sp. (sediment metagenome)
  ORGANISM  Methanohalobium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalobium.
REFERENCE   1  (bases 1 to 2086548)
  AUTHORS   Mcgonigle,J.M., Bernau,J.A., Bowen,B. and Brazelton,W.J.
  TITLE     Metabolic potential of microbial communities in the hypersaline
            sediments of the Bonneville Salt Flats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2086548)
  AUTHORS   Mcgonigle,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAY-2021) School of Biological Sciences, University
            of Utah, 257 S 1400 E, Rm 201, Salt Lake City, UT 84112, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHENT000000000.1.
            The Methanohalobium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAHENT000000000.  This version of the project
            (01) has the accession number NZ_JAHENT010000000, and consists of
            sequences JAHENT010000001-JAHENT010000161.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MegaHit v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018609725.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 04:25:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,303
            CDSs (total)                      :: 2,256
            Genes (coding)                    :: 2,168
            CDSs (with protein)               :: 2,168
            Genes (RNA)                       :: 47
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 24 of 88
            Pseudo Genes (incomplete)         :: 71 of 88
            Pseudo Genes (internal stop)      :: 13 of 88
            Pseudo Genes (multiple problems)  :: 16 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086548
                     /organism="Methanohalobium sp."
                     /mol_type="genomic DNA"
                     /isolate="BinSanityLC-kmean-bin_14-bin_0-refined_8"
                     /isolation_source="salt flat sediment sample"
                     /db_xref="taxon:2837493"
                     /environmental_sample
                     /geo_loc_name="USA: Utah Bonneville Salt Flats"
                     /lat_lon="40.75934984 N 113.901557 W"
                     /collection_date="2016-09-03"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JAHENT010000001-JAHENT010000161
WGS_SCAFLD  NZ_JAHENT010000001-NZ_JAHENT010000161
//
LOCUS       NZ_CALZFV010000000   1866437 bp    DNA     linear   ENV 07-AUG-2024
DEFINITION  MAG: Methanobrevibacter ruminantium isolate
            SRR14474045_bin.29_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CALZFV000000000
VERSION     NZ_CALZFV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110321985
            Sequence Read Archive: SRR14474045
            Assembly: GCF_945650115.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (pig gut metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1866437)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALZFV000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_CALZFV000000000.  This version
            of the project (01) has the accession number NZ_CALZFV010000000,
            and consists of sequences CALZFV010000001-CALZFV010000097.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137368.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR14474045.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_945650115.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 04:46:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,806
            CDSs (total)                      :: 1,782
            Genes (coding)                    :: 1,761
            CDSs (with protein)               :: 1,761
            Genes (RNA)                       :: 24
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 19
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 1 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866437
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="SRR14474045_bin.29_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CALZFV010000001-CALZFV010000097
WGS_SCAFLD  NZ_CALZFV010000001-NZ_CALZFV010000097
//
LOCUS       NZ_JADPQC010000000   3367405 bp    DNA     linear   BCT 07-AUG-2024
DEFINITION  Halomicrobium sp. IBSBa, whole genome shotgun sequencing project.
ACCESSION   NZ_JADPQC000000000
VERSION     NZ_JADPQC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16385344
            Assembly: GCF_017612575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicrobium sp. IBSBa
  ORGANISM  Halomicrobium sp. IBSBa
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halomicrobium.
REFERENCE   1  (bases 1 to 3367405)
  AUTHORS   Kirtel,O., Lescrinier,E., Van Den Ende,W. and Toksoy Oner,E.
  TITLE     Inulin-producing extremely halophilic Archaeon
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3367405)
  AUTHORS   Kirtel,O., Lescrinier,E., Van Den Ende,W. and Toksoy Oner,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-NOV-2020) Bioengineering, Marmara University,
            IBSB-Industrial Biotechnology and Systems Biology Research Group,
            Marmara University, Goztepe Campus, Istanbul 34722, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADPQC000000000.1.
            The Halomicrobium sp. IBSBa whole genome shotgun (WGS) project has
            the project accession NZ_JADPQC000000000.  This version of the
            project (01) has the accession number NZ_JADPQC010000000, and
            consists of sequences JADPQC010000001-JADPQC010000085.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017612575.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 04:45:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,515
            CDSs (total)                      :: 3,461
            Genes (coding)                    :: 3,391
            CDSs (with protein)               :: 3,391
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 15 of 70
            Pseudo Genes (incomplete)         :: 56 of 70
            Pseudo Genes (internal stop)      :: 5 of 70
            Pseudo Genes (multiple problems)  :: 6 of 70
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367405
                     /organism="Halomicrobium sp. IBSBa"
                     /mol_type="genomic DNA"
                     /strain="IBSBa"
                     /isolation_source="Crude salt from Tuz Lake"
                     /db_xref="taxon:2778916"
                     /geo_loc_name="Turkey: Tuz Lake"
                     /collection_date="2017-09"
WGS         JADPQC010000001-JADPQC010000085
WGS_SCAFLD  NZ_JADPQC010000001-NZ_JADPQC010000085
//
LOCUS       NZ_JAPDFS010000000   3280496 bp    DNA     linear   BCT 07-AUG-2024
DEFINITION  Halorubrum sp. F4, whole genome shotgun sequencing project.
ACCESSION   NZ_JAPDFS000000000
VERSION     NZ_JAPDFS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31432563
            Assembly: GCF_027257195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. F4
  ORGANISM  Halorubrum sp. F4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3280496)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a salted mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3280496)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2022) College of Life Sciences, Anhui Normal
            University, Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPDFS000000000.1.
            The Halorubrum sp. F4 whole genome shotgun (WGS) project has the
            project accession NZ_JAPDFS000000000.  This version of the project
            (01) has the accession number NZ_JAPDFS010000000, and consists of
            sequences JAPDFS010000001-JAPDFS010000077.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027257195.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 05:04:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,349
            CDSs (total)                      :: 3,293
            Genes (coding)                    :: 3,205
            CDSs (with protein)               :: 3,205
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 23 of 88
            Pseudo Genes (incomplete)         :: 71 of 88
            Pseudo Genes (internal stop)      :: 12 of 88
            Pseudo Genes (multiple problems)  :: 16 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280496
                     /organism="Halorubrum sp. F4"
                     /mol_type="genomic DNA"
                     /strain="F4"
                     /isolation_source="salt mine"
                     /db_xref="taxon:2989715"
                     /geo_loc_name="China: Yunnan"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
WGS         JAPDFS010000001-JAPDFS010000077
WGS_SCAFLD  NZ_JAPDFS010000001-NZ_JAPDFS010000077
//
LOCUS       NZ_JAHPYX010000000   3679462 bp    DNA     linear   ENV 07-AUG-2024
DEFINITION  MAG: Candidatus Borrarchaeum sp. isolate LW55_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAHPYX000000000
VERSION     NZ_JAHPYX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19664020
            Assembly: GCF_019058535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Borrarchaeum sp. (sediment metagenome)
  ORGANISM  Candidatus Borrarchaeum sp.
            Archaea; Promethearchaeati; Candidatus Borrarchaeota; Candidatus
            Borrarchaeia; Candidatus Borrarchaeales; Candidatus
            Borrarchaeaceae; Candidatus Borrarchaeum.
REFERENCE   1  (bases 1 to 3679462)
  AUTHORS   Sun,J., Evans,P.N., Gagen,E.J., Woodcroft,B.J., Hedlund,B.P.,
            Woyke,T., Hugenholtz,P. and Rinke,C.
  TITLE     Recoding of stop codons expands the metabolic potential of two
            novel Asgardarchaeota lineages
  JOURNAL   ISME Commun 1 (1) (2021)
REFERENCE   2  (bases 1 to 3679462)
  AUTHORS   Sun,J., Evans,P.N., Gagen,E.J., Woodcroft,B.J., Hedlund,B.P.,
            Woyke,T., Hugenholtz,P. and Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUN-2021) The University of Queensland, The
            University of Queensland, Building 76, School of Chemistry and
            Molecular Biosciences, The University of Queensland, St Lucia,
            Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHPYX000000000.1.
            The Candidatus Borrarchaeum sp. whole genome shotgun (WGS) project
            has the project accession NZ_JAHPYX000000000.  This version of the
            project (01) has the accession number NZ_JAHPYX010000000, and
            consists of sequences JAHPYX010000001-JAHPYX010000283.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: metaSPAdes v. v3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 93.15x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019058535.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 05:33:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,701
            CDSs (total)                      :: 3,657
            Genes (coding)                    :: 3,573
            CDSs (with protein)               :: 3,573
            Genes (RNA)                       :: 44
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 4 of 84
            Pseudo Genes (incomplete)         :: 76 of 84
            Pseudo Genes (internal stop)      :: 7 of 84
            Pseudo Genes (multiple problems)  :: 3 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3679462
                     /organism="Candidatus Borrarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="LW55_7"
                     /isolation_source="Saline water lake sediment"
                     /db_xref="taxon:2846742"
                     /environmental_sample
                     /geo_loc_name="Australia: Lake Weyba, Sunshine Coast"
                     /lat_lon="26.44 S 153.06 E"
                     /collection_date="2018"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JAHPYX010000001-JAHPYX010000283
WGS_SCAFLD  NZ_JAHPYX010000001-NZ_JAHPYX010000283
//
LOCUS       NZ_JAXHGN010000000   4968424 bp    DNA     linear   BCT 07-AUG-2024
DEFINITION  Natrialba sp. PRR66, whole genome shotgun sequencing project.
ACCESSION   NZ_JAXHGN000000000
VERSION     NZ_JAXHGN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38415159
            Assembly: GCF_034808065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba sp. PRR66
  ORGANISM  Natrialba sp. PRR66
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4968424)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a salted mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4968424)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2023) College of Life Sciences, Anhui Normal
            University, Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXHGN000000000.1.
            The Natrialba sp. PRR66 whole genome shotgun (WGS) project has the
            project accession NZ_JAXHGN000000000.  This version of the project
            (01) has the accession number NZ_JAXHGN010000000, and consists of
            sequences JAXHGN010000001-JAXHGN010000312.
            Bacteria and source DNA available from salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034808065.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 05:30:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,888
            CDSs (total)                      :: 4,827
            Genes (coding)                    :: 4,596
            CDSs (with protein)               :: 4,596
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3, 5 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 231
            CDSs (without protein)            :: 231
            Pseudo Genes (ambiguous residues) :: 0 of 231
            Pseudo Genes (frameshifted)       :: 76 of 231
            Pseudo Genes (incomplete)         :: 180 of 231
            Pseudo Genes (internal stop)      :: 56 of 231
            Pseudo Genes (multiple problems)  :: 62 of 231
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4968424
                     /organism="Natrialba sp. PRR66"
                     /mol_type="genomic DNA"
                     /strain="PRR66"
                     /isolation_source="salt mine"
                     /db_xref="taxon:3098146"
                     /geo_loc_name="China: Anhui"
                     /collection_date="2021-08-10"
                     /collected_by="Shaoxing Chen"
WGS         JAXHGN010000001-JAXHGN010000312
WGS_SCAFLD  NZ_JAXHGN010000001-NZ_JAXHGN010000312
//
LOCUS       NZ_JAXHGL010000000   4012618 bp    DNA     linear   BCT 07-AUG-2024
DEFINITION  Halostella sp. PRR32, whole genome shotgun sequencing project.
ACCESSION   NZ_JAXHGL000000000
VERSION     NZ_JAXHGL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38415154
            Assembly: GCF_034808085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostella sp. PRR32
  ORGANISM  Halostella sp. PRR32
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae; Halostella.
REFERENCE   1  (bases 1 to 4012618)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a salted mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4012618)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2023) College of Life Sciences, Anhui Normal
            University, Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXHGL000000000.1.
            The Halostella sp. PRR32 whole genome shotgun (WGS) project has the
            project accession NZ_JAXHGL000000000.  This version of the project
            (01) has the accession number NZ_JAXHGL010000000, and consists of
            sequences JAXHGL010000001-JAXHGL010000321.
            Bacteria and source DNA available from salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034808085.1-RS_2024_08_07
            Annotation Date                   :: 08/07/2024 05:25:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,266
            CDSs (total)                      :: 4,202
            Genes (coding)                    :: 4,060
            CDSs (with protein)               :: 4,060
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 2, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 8 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 142
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 0 of 142
            Pseudo Genes (frameshifted)       :: 17 of 142
            Pseudo Genes (incomplete)         :: 128 of 142
            Pseudo Genes (internal stop)      :: 8 of 142
            Pseudo Genes (multiple problems)  :: 10 of 142
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4012618
                     /organism="Halostella sp. PRR32"
                     /mol_type="genomic DNA"
                     /strain="PRR32"
                     /isolation_source="salt mine"
                     /db_xref="taxon:3098147"
                     /geo_loc_name="China: Anhui"
                     /collection_date="2021-08-10"
                     /collected_by="Shaoxing Chen"
WGS         JAXHGL010000001-JAXHGL010000321
WGS_SCAFLD  NZ_JAXHGL010000001-NZ_JAXHGL010000321
//
LOCUS       NZ_JAAOHV010000000   4372177 bp    DNA     linear   BCT 11-AUG-2024
DEFINITION  Halorussus sp. JP-T4, whole genome shotgun sequencing project.
ACCESSION   NZ_JAAOHV000000000
VERSION     NZ_JAAOHV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14351924
            Assembly: GCF_011440385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus sp. JP-T4
  ORGANISM  Halorussus sp. JP-T4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4372177)
  AUTHORS   Wang,Z., Xu,J.Q., Xu,W.M., Li,Y., Zhou,Y., Lu,Z.Z., Hou,J., Zhu,L.
            and Cui,H.L.
  TITLE     Salinigranum salinum sp. nov., isolated from a marine solar saltern
  JOURNAL   Int J Syst Evol Microbiol 66 (8), 3017-3021 (2016)
   PUBMED   27151192
REFERENCE   2  (bases 1 to 4372177)
  AUTHORS   Wei,W. and Sai,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2020) School of Agricultural Equipment
            Engineering, Jiangsu University, Xuefu Road, Zhenjiang, Jiangsu
            212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAOHV000000000.1.
            The Halorussus sp. JP-T4 whole genome shotgun (WGS) project has the
            project accession NZ_JAAOHV000000000.  This version of the project
            (01) has the accession number NZ_JAAOHV010000000, and consists of
            sequences JAAOHV010000001-JAAOHV010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011440385.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 02:54:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,400
            CDSs (total)                      :: 4,343
            Genes (coding)                    :: 4,305
            CDSs (with protein)               :: 4,305
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 11 of 38
            Pseudo Genes (incomplete)         :: 33 of 38
            Pseudo Genes (internal stop)      :: 2 of 38
            Pseudo Genes (multiple problems)  :: 8 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4372177
                     /organism="Halorussus sp. JP-T4"
                     /mol_type="genomic DNA"
                     /strain="JP-T4"
                     /isolation_source="soil"
                     /db_xref="taxon:2716718"
                     /geo_loc_name="China: Anda"
                     /lat_lon="46.27 N 125.22 E"
                     /collection_date="2015-05"
WGS         JAAOHV010000001-JAAOHV010000007
WGS_SCAFLD  NZ_JAAOHV010000001-NZ_JAAOHV010000007
//
LOCUS       NZ_CAMBKS010000000   1873537 bp    DNA     linear   ENV 11-AUG-2024
DEFINITION  MAG: Methanobrevibacter ruminantium isolate
            SRR15732358_bin.9_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMBKS000000000
VERSION     NZ_CAMBKS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110402541
            Sequence Read Archive: SRR15732358
            Assembly: GCF_945868105.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (pig gut metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1873537)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMBKS000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_CAMBKS000000000.  This version
            of the project (01) has the accession number NZ_CAMBKS010000000,
            and consists of sequences CAMBKS010000001-CAMBKS010000111.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137371.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR15732358.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_945868105.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 03:37:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,894
            CDSs (total)                      :: 1,863
            Genes (coding)                    :: 1,837
            CDSs (with protein)               :: 1,837
            Genes (RNA)                       :: 31
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 5 of 26
            Pseudo Genes (incomplete)         :: 18 of 26
            Pseudo Genes (internal stop)      :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873537
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="SRR15732358_bin.9_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMBKS010000001-CAMBKS010000111
WGS_SCAFLD  NZ_CAMBKS010000001-NZ_CAMBKS010000111
//
LOCUS       NZ_CAMEQT010000000   1500559 bp    DNA     linear   ENV 11-AUG-2024
DEFINITION  MAG: Methanobrevibacter gottschalkii isolate
            SRR15057929_bin.22_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMEQT000000000
VERSION     NZ_CAMEQT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110414578
            Sequence Read Archive: SRR15057929
            Assembly: GCF_945933675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter gottschalkii (pig gut metagenome)
  ORGANISM  Methanobrevibacter gottschalkii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1500559)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMEQT000000000.1.
            The Methanobrevibacter gottschalkii whole genome shotgun (WGS)
            project has the project accession NZ_CAMEQT000000000.  This version
            of the project (01) has the accession number NZ_CAMEQT010000000,
            and consists of sequences CAMEQT010000001-CAMEQT010000055.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137700.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR15057929.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_945933675.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 03:37:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,651
            CDSs (total)                      :: 1,616
            Genes (coding)                    :: 1,600
            CDSs (with protein)               :: 1,600
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 1 of 16
            Pseudo Genes (incomplete)         :: 13 of 16
            Pseudo Genes (internal stop)      :: 2 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500559
                     /organism="Methanobrevibacter gottschalkii"
                     /mol_type="genomic DNA"
                     /isolate="SRR15057929_bin.22_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:190974"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMEQT010000001-CAMEQT010000055
WGS_SCAFLD  NZ_CAMEQT010000001-NZ_CAMEQT010000055
//
LOCUS       NZ_JAMYJX010000000   4824700 bp    DNA     linear   BCT 11-AUG-2024
DEFINITION  Haladaptatus sp. AB618, whole genome shotgun sequencing project.
ACCESSION   NZ_JAMYJX000000000
VERSION     NZ_JAMYJX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27512718
            Assembly: GCF_024136965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. AB618
  ORGANISM  Haladaptatus sp. AB618
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 4824700)
  AUTHORS   Mukherji,S., Bakshi,U. and Ghosh,A.
  TITLE     Draft genome sequences of hydrocarbon degrading Haloferax sp.
            AB510, Haladaptatus sp. AB618 and Haladaptatus sp. AB643 isolated
            from the estuarine sediments of Sundarban mangrove forests, India
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4824700)
  AUTHORS   Mukherji,S., Bakshi,U. and Ghosh,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2022) Biochemistry, Bose Institute, EN 80, Sector
            V, Bidhan Nagar, Kolkata, West Bengal 700091, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMYJX000000000.1.
            The Haladaptatus sp. AB618 whole genome shotgun (WGS) project has
            the project accession NZ_JAMYJX000000000.  This version of the
            project (01) has the accession number NZ_JAMYJX010000000, and
            consists of sequences JAMYJX010000001-JAMYJX010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-AUG-2019
            Assembly Method        :: SPAdes v. 3.6
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024136965.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 03:34:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,837
            CDSs (total)                      :: 4,777
            Genes (coding)                    :: 4,719
            CDSs (with protein)               :: 4,719
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 5 (16S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 23 of 58
            Pseudo Genes (incomplete)         :: 35 of 58
            Pseudo Genes (internal stop)      :: 3 of 58
            Pseudo Genes (multiple problems)  :: 3 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4824700
                     /organism="Haladaptatus sp. AB618"
                     /mol_type="genomic DNA"
                     /strain="AB618"
                     /isolation_source="estuarine mud [ENVO:00002160]"
                     /db_xref="taxon:2934173"
                     /geo_loc_name="India:West Bengal, Sundarban mangrove
                     forests"
                     /lat_lon="22.10904722 N 88.77283889 E"
                     /collection_date="2017-01"
WGS         JAMYJX010000001-JAMYJX010000040
WGS_SCAFLD  NZ_JAMYJX010000001-NZ_JAMYJX010000040
//
LOCUS       NZ_CAMFSI010000000   1495101 bp    DNA     linear   ENV 11-AUG-2024
DEFINITION  MAG: Methanobrevibacter gottschalkii isolate
            ERR2020037_bin.5_metaWRAP_v1.3_MAG, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAMFSI000000000
VERSION     NZ_CAMFSI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110425026
            Sequence Read Archive: ERR2020037
            Assembly: GCF_945982695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter gottschalkii (pig gut metagenome)
  ORGANISM  Methanobrevibacter gottschalkii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1495101)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMFSI000000000.1.
            The Methanobrevibacter gottschalkii whole genome shotgun (WGS)
            project has the project accession NZ_CAMFSI000000000.  This version
            of the project (01) has the accession number NZ_CAMFSI010000000,
            and consists of sequences CAMFSI010000001-CAMFSI010000126.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137805.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run ERR2020037.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_945982695.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 03:38:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,644
            CDSs (total)                      :: 1,611
            Genes (coding)                    :: 1,564
            CDSs (with protein)               :: 1,564
            Genes (RNA)                       :: 33
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 1 of 47
            Pseudo Genes (incomplete)         :: 39 of 47
            Pseudo Genes (internal stop)      :: 7 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1495101
                     /organism="Methanobrevibacter gottschalkii"
                     /mol_type="genomic DNA"
                     /isolate="ERR2020037_bin.5_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:190974"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CAMFSI010000001-CAMFSI010000126
WGS_SCAFLD  NZ_CAMFSI010000001-NZ_CAMFSI010000126
//
LOCUS       NZ_CANQEZ010000000   1714301 bp    DNA     linear   ENV 11-AUG-2024
DEFINITION  MAG: Methanosphaera cuniculi isolate Lapin-003-2__bin24, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CANQEZ000000000
VERSION     NZ_CANQEZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA112229970
            Assembly: GCF_947597825.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera cuniculi (rabbit gut metagenome)
  ORGANISM  Methanosphaera cuniculi
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1714301)
  AUTHORS   Pons,N.
  CONSRTM   INRAE-MetaGenoPolis
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2022) INRA-META, METAGENOPOLIS, Domaine de
            Vilvert, 78352 JOUY-EN-JOSAS, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CANQEZ000000000.1.
            The Methanosphaera cuniculi whole genome shotgun (WGS) project has
            the project accession NZ_CANQEZ000000000.  This version of the
            project (01) has the accession number NZ_CANQEZ010000000, and
            consists of sequences CANQEZ010000001-CANQEZ010000007.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_947597825.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 03:47:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,504
            CDSs (total)                      :: 1,461
            Genes (coding)                    :: 1,456
            CDSs (with protein)               :: 1,456
            Genes (RNA)                       :: 43
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 2 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714301
                     /organism="Methanosphaera cuniculi"
                     /mol_type="genomic DNA"
                     /isolate="Lapin-003-2__bin24"
                     /isolation_source="rabbit gut"
                     /db_xref="taxon:1077256"
                     /environmental_sample
                     /metagenome_source="rabbit gut metagenome"
                     /metagenomic
WGS         CANQEZ010000001-CANQEZ010000007
WGS_SCAFLD  NZ_CANQEZ010000001-NZ_CANQEZ010000007
//
LOCUS       NZ_JAQXLS010000000   1940404 bp    DNA     linear   ENV 11-AUG-2024
DEFINITION  MAG: Methanobrevibacter ruminantium isolate SUG2186, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAQXLS000000000
VERSION     NZ_JAQXLS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32899612
            Assembly: GCF_029012245.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (pig gut metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1940404)
  AUTHORS   Holman,D.B. and Gzyl,K.E.
  TITLE     Metagenome-assembled genomes from pasture and conventional
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1940404)
  AUTHORS   Holman,D.B. and Gzyl,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2023) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQXLS000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_JAQXLS000000000.  This version
            of the project (01) has the accession number NZ_JAQXLS010000000,
            and consists of sequences JAQXLS010000001-JAQXLS010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 21-APR-2022
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 77.081116x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029012245.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 03:50:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,861
            CDSs (total)                      :: 1,823
            Genes (coding)                    :: 1,808
            CDSs (with protein)               :: 1,808
            Genes (RNA)                       :: 38
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 8 of 15
            Pseudo Genes (incomplete)         :: 5 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940404
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="SUG2186"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2018"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JAQXLS010000001-JAQXLS010000009
WGS_SCAFLD  NZ_JAQXLS010000001-NZ_JAQXLS010000009
//
LOCUS       NZ_JANJYH010000000   3894013 bp    DNA     linear   BCT 11-AUG-2024
DEFINITION  Haloarchaeobius sp. FL176, whole genome shotgun sequencing project.
ACCESSION   NZ_JANJYH000000000
VERSION     NZ_JANJYH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29914698
            Assembly: GCF_024609245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius sp. FL176
  ORGANISM  Haloarchaeobius sp. FL176
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 3894013)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a salted seafood
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3894013)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2022) College of Life Sciences, Anhui Normal
            University, Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANJYH000000000.1.
            The Haloarchaeobius sp. FL176 whole genome shotgun (WGS) project
            has the project accession NZ_JANJYH000000000.  This version of the
            project (01) has the accession number NZ_JANJYH010000000, and
            consists of sequences JANJYH010000001-JANJYH010000036.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024609245.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 03:53:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,970
            CDSs (total)                      :: 3,911
            Genes (coding)                    :: 3,831
            CDSs (with protein)               :: 3,831
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 6 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 22 of 80
            Pseudo Genes (incomplete)         :: 72 of 80
            Pseudo Genes (internal stop)      :: 9 of 80
            Pseudo Genes (multiple problems)  :: 18 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3894013
                     /organism="Haloarchaeobius sp. FL176"
                     /mol_type="genomic DNA"
                     /strain="FL176"
                     /isolation_source="Salted seafood"
                     /db_xref="taxon:2967129"
                     /geo_loc_name="China: Wuhui"
                     /collection_date="2018-07-10"
                     /collected_by="Shaoxing Chen"
                     /identified_by="Shaoxing Chen"
WGS         JANJYH010000001-JANJYH010000036
WGS_SCAFLD  NZ_JANJYH010000001-NZ_JANJYH010000036
//
LOCUS       NZ_JAODVR010000000   4187993 bp    DNA     linear   BCT 11-AUG-2024
DEFINITION  Haloarchaeobius sp. HME9146, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAODVR000000000
VERSION     NZ_JAODVR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30841357
            Assembly: GCF_025399835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius sp. HME9146
  ORGANISM  Haloarchaeobius sp. HME9146
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4187993)
  AUTHORS   Kim,H., Kang,H. and Joh,K.
  TITLE     Haloarchaeobius sp. HME9146 genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4187993)
  AUTHORS   Kim,H., Kang,H. and Joh,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-SEP-2022) Bioscience and Biotechnology, Hankuk
            University of Foreign Studues, 81, Oedae-ro, Gyeonggi-do 17035,
            South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAODVR000000000.1.
            The Haloarchaeobius sp. HME9146 whole genome shotgun (WGS) project
            has the project accession NZ_JAODVR000000000.  This version of the
            project (01) has the accession number NZ_JAODVR010000000, and
            consists of sequences JAODVR010000001-JAODVR010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 238.75x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025399835.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 03:56:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,207
            CDSs (total)                      :: 4,146
            Genes (coding)                    :: 4,125
            CDSs (with protein)               :: 4,125
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 8 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 1 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4187993
                     /organism="Haloarchaeobius sp. HME9146"
                     /mol_type="genomic DNA"
                     /strain="HME9146"
                     /isolation_source="solar saltern"
                     /db_xref="taxon:2978732"
                     /geo_loc_name="South Korea: Shinan"
                     /collection_date="2014-10"
WGS         JAODVR010000001-JAODVR010000003
WGS_SCAFLD  NZ_JAODVR010000001-NZ_JAODVR010000003
//
LOCUS       NZ_JASVVV010000000   3468802 bp    DNA     linear   BCT 11-AUG-2024
DEFINITION  Halalkalicoccus sp. NIPERK01, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JASVVV000000000
VERSION     NZ_JASVVV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35699926
            Assembly: GCF_030287405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus sp. NIPERK01
  ORGANISM  Halalkalicoccus sp. NIPERK01
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 3468802)
  AUTHORS   Ashok,G.
  TITLE     Genome sequencing of extreme halophilic Halalkalicoccus strain
            isolated from Lonar Lake, India
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3468802)
  AUTHORS   Ashok,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2023) Department of Medicinal Chemistry, National
            Institute of Pharmaceutical Education and Research, Kolkata,
            National Institute of Pharmaceutical Education and Research, 168,
            Maniktala main road, Kolkata, Kolkata, **Non-US resident** 700054,
            India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASVVV000000000.1.
            The Halalkalicoccus sp. NIPERK01 whole genome shotgun (WGS) project
            has the project accession NZ_JASVVV000000000.  This version of the
            project (01) has the accession number NZ_JASVVV010000000, and
            consists of sequences JASVVV010000001-JASVVV010000081.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from PI, Department of Medicinal
            Chemistry, NIPER, Kolkata.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030287405.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 04:06:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,743
            CDSs (total)                      :: 3,690
            Genes (coding)                    :: 3,626
            CDSs (with protein)               :: 3,626
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 23 of 64
            Pseudo Genes (incomplete)         :: 46 of 64
            Pseudo Genes (internal stop)      :: 11 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468802
                     /organism="Halalkalicoccus sp. NIPERK01"
                     /mol_type="genomic DNA"
                     /strain="NIPERK01"
                     /isolation_source="soil sample"
                     /db_xref="taxon:3053469"
                     /geo_loc_name="India: Lonar Lake"
                     /lat_lon="19.97 N 76.51 E"
                     /collection_date="2021-06-30"
                     /collected_by="Dynesawar panpatte"
                     /identified_by="Ganapathy Ashok"
WGS         JASVVV010000001-JASVVV010000081
WGS_SCAFLD  NZ_JASVVV010000001-NZ_JASVVV010000081
//
LOCUS       NZ_JANGFQ010000000   2120969 bp    DNA     linear   ENV 11-AUG-2024
DEFINITION  MAG: Candidatus Culexarchaeum yellowstonense isolate YNP-LCB-3-016,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JANGFQ000000000
VERSION     NZ_JANGFQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26898765
            Assembly: GCF_024707025.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Culexarchaeum yellowstonense (hot springs metagenome)
  ORGANISM  Candidatus Culexarchaeum yellowstonense
            Archaea; Candidatus Culexarchaeota; Candidatus Culexarchaeia;
            Candidatus Culexarchaeles; Candidatus Culexarchaeaceae; Candidatus
            Culexarchaeum.
REFERENCE   1  (bases 1 to 2120969)
  AUTHORS   Kohtz,A.J., Jay,Z.J., Lynes,M., Krukenberg,V. and Hatzenpichler,R.
  TITLE     Culexarchaeia, a novel archaeal class of anaerobic generalists
            inhabiting geothermal environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2120969)
  AUTHORS   Kohtz,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAY-2022) Biochemistry, Montana State University,
            1600 S 11th Ave 103 Chemistry and Biochemistry Bldg, Bozeman, MT
            59717, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANGFQ000000000.1.
            The Candidatus Culexarchaeum yellowstonense whole genome shotgun
            (WGS) project has the project accession NZ_JANGFQ000000000.  This
            version of the project (01) has the accession number
            NZ_JANGFQ010000000, and consists of sequences
            JANGFQ010000001-JANGFQ010000266.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72.1x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024707025.1-RS_2024_08_11
            Annotation Date                   :: 08/11/2024 04:18:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,529
            CDSs (total)                      :: 2,488
            Genes (coding)                    :: 2,400
            CDSs (with protein)               :: 2,400
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 6 of 88
            Pseudo Genes (incomplete)         :: 81 of 88
            Pseudo Genes (internal stop)      :: 1 of 88
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120969
                     /organism="Candidatus Culexarchaeum yellowstonense"
                     /mol_type="genomic DNA"
                     /isolate="YNP-LCB-3-016"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2928963"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park, Wyoming"
                     /lat_lon="44.57763 N 110.78957 W"
                     /collection_date="2017-10-28"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JANGFQ010000001-JANGFQ010000266
WGS_SCAFLD  NZ_JANGFQ010000001-NZ_JANGFQ010000266
//
LOCUS       NZ_SUTK01000000      1923644 bp    DNA     linear   ENV 12-AUG-2024
DEFINITION  MAG: Methanobrevibacter thaueri isolate SIG18, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SUTK00000000
VERSION     NZ_SUTK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11294303
            Assembly: GCF_015062905.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter thaueri (feces metagenome)
  ORGANISM  Methanobrevibacter thaueri
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1923644)
  AUTHORS   Peng,X.
  TITLE     Evolution of Biomass-Degrading Anaerobic Consortia Revealed by
            Metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1923644)
  AUTHORS   Peng,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2019) Chemical Engineering, University of
            California, Santa Barbara, 3357 Engineering II, University of
            California, Santa Barbara, CA 93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SUTK00000000.1.
            The Methanobrevibacter thaueri whole genome shotgun (WGS) project
            has the project accession NZ_SUTK00000000.  This version of the
            project (01) has the accession number NZ_SUTK01000000, and consists
            of sequences SUTK01000001-SUTK01000101.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.67234x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015062905.1-RS_2024_08_12
            Annotation Date                   :: 08/12/2024 03:09:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,949
            CDSs (total)                      :: 1,910
            Genes (coding)                    :: 1,880
            CDSs (with protein)               :: 1,880
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 6 of 30
            Pseudo Genes (incomplete)         :: 25 of 30
            Pseudo Genes (internal stop)      :: 0 of 30
            Pseudo Genes (multiple problems)  :: 1 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923644
                     /organism="Methanobrevibacter thaueri"
                     /mol_type="genomic DNA"
                     /isolate="SIG18"
                     /isolation_source="feces"
                     /host="San Clemente Island Goat"
                     /db_xref="taxon:190975"
                     /environmental_sample
                     /geo_loc_name="USA: Santa Barbara Zoo"
                     /lat_lon="34.4149 N 119.841 W"
                     /collection_date="2016-06-16"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         SUTK01000001-SUTK01000101
WGS_SCAFLD  NZ_SUTK01000001-NZ_SUTK01000101
//
LOCUS       NZ_SUTE01000000      2378981 bp    DNA     linear   ENV 12-AUG-2024
DEFINITION  MAG: Methanobrevibacter millerae isolate SIG12, whole genome
            shotgun sequencing project.
ACCESSION   NZ_SUTE00000000
VERSION     NZ_SUTE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11294297
            Assembly: GCF_015063065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter millerae (feces metagenome)
  ORGANISM  Methanobrevibacter millerae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2378981)
  AUTHORS   Peng,X.
  TITLE     Evolution of Biomass-Degrading Anaerobic Consortia Revealed by
            Metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2378981)
  AUTHORS   Peng,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2019) Chemical Engineering, University of
            California, Santa Barbara, 3357 Engineering II, University of
            California, Santa Barbara, CA 93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SUTE00000000.1.
            The Methanobrevibacter millerae whole genome shotgun (WGS) project
            has the project accession NZ_SUTE00000000.  This version of the
            project (01) has the accession number NZ_SUTE01000000, and consists
            of sequences SUTE01000001-SUTE01000109.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31.29605273x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015063065.1-RS_2024_08_12
            Annotation Date                   :: 08/12/2024 03:12:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,332
            CDSs (total)                      :: 2,291
            Genes (coding)                    :: 2,247
            CDSs (with protein)               :: 2,247
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 8 of 44
            Pseudo Genes (incomplete)         :: 37 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 2 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2378981
                     /organism="Methanobrevibacter millerae"
                     /mol_type="genomic DNA"
                     /isolate="SIG12"
                     /isolation_source="feces"
                     /host="San Clemente Island Goat"
                     /db_xref="taxon:230361"
                     /environmental_sample
                     /geo_loc_name="USA: Santa Barbara Zoo"
                     /lat_lon="34.4149 N 119.841 W"
                     /collection_date="2016-06-16"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         SUTE01000001-SUTE01000109
WGS_SCAFLD  NZ_SUTE01000001-NZ_SUTE01000109
//
LOCUS       NZ_CALZFF010000000   1734542 bp    DNA     linear   ENV 12-AUG-2024
DEFINITION  MAG: Methanobrevibacter gottschalkii isolate
            SRR14474044_bin.6_metaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CALZFF000000000
VERSION     NZ_CALZFF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110321972
            Sequence Read Archive: SRR14474044
            Assembly: GCF_945645595.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter gottschalkii (pig gut metagenome)
  ORGANISM  Methanobrevibacter gottschalkii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1734542)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2022) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALZFF000000000.1.
            The Methanobrevibacter gottschalkii whole genome shotgun (WGS)
            project has the project accession NZ_CALZFF000000000.  This version
            of the project (01) has the accession number NZ_CALZFF010000000,
            and consists of sequences CALZFF010000001-CALZFF010000040.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137368.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR14474044.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_945645595.1-RS_2024_08_12
            Annotation Date                   :: 08/12/2024 03:30:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,850
            CDSs (total)                      :: 1,813
            Genes (coding)                    :: 1,805
            CDSs (with protein)               :: 1,805
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 0 of 8
            Pseudo Genes (incomplete)         :: 8 of 8
            Pseudo Genes (internal stop)      :: 0 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734542
                     /organism="Methanobrevibacter gottschalkii"
                     /mol_type="genomic DNA"
                     /isolate="SRR14474044_bin.6_metaWRAP_v1.3_MAG"
                     /isolation_source="pig gut metagenome"
                     /db_xref="taxon:190974"
                     /environmental_sample
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         CALZFF010000001-CALZFF010000040
WGS_SCAFLD  NZ_CALZFF010000001-NZ_CALZFF010000040
//
LOCUS       NZ_VOUA01000000      4039277 bp    DNA     linear   BCT 12-AUG-2024
DEFINITION  Methanosarcina sp. KYL-1, whole genome shotgun sequencing project.
ACCESSION   NZ_VOUA00000000
VERSION     NZ_VOUA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12512307
            Assembly: GCF_024372725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. KYL-1
  ORGANISM  Methanosarcina sp. KYL-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4039277)
  AUTHORS   Lee,K.-Y., Lai,M.-C. and Chen,S.-C.
  TITLE     Methanosarcina sp. KYL-1 isolated from marine sediment at Fangliao
            Canyon, offshore SW Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4039277)
  AUTHORS   Lee,K.-Y., Lai,M.-C. and Chen,S.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2019) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VOUA00000000.1.
            The Methanosarcina sp. KYL-1 whole genome shotgun (WGS) project has
            the project accession NZ_VOUA00000000.  This version of the project
            (01) has the accession number NZ_VOUA01000000, and consists of
            sequences VOUA01000001-VOUA01000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Department of Life Sciences,
            National Chung Hsing University, Taichung, Taiwan; PI: Prof.
            Mei-Chin Lai.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 08-JUL-2019
            Assembly Method        :: SPAdes v. July-2019
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 247.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024372725.1-RS_2024_08_12
            Annotation Date                   :: 08/12/2024 03:39:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,588
            CDSs (total)                      :: 3,525
            Genes (coding)                    :: 3,465
            CDSs (with protein)               :: 3,465
            Genes (RNA)                       :: 63
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 14 of 60
            Pseudo Genes (incomplete)         :: 41 of 60
            Pseudo Genes (internal stop)      :: 17 of 60
            Pseudo Genes (multiple problems)  :: 11 of 60
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4039277
                     /organism="Methanosarcina sp. KYL-1"
                     /mol_type="genomic DNA"
                     /strain="KYL-1"
                     /isolation_source="marine sediment"
                     /db_xref="taxon:2602068"
                     /geo_loc_name="Taiwan: offshore southwestern Taiwan"
                     /lat_lon="22.2158 N 120.5749 E"
                     /collection_date="2017-05"
                     /collected_by="Sheng-Chung Chen"
                     /identified_by="Kuan-Yi Lee"
WGS         VOUA01000001-VOUA01000066
WGS_SCAFLD  NZ_VOUA01000001-NZ_VOUA01000066
//
LOCUS       NZ_JAUNXQ010000000   1984279 bp    DNA     linear   ENV 12-AUG-2024
DEFINITION  MAG: Methanobrevibacter ruminantium isolate S28M_St_metabat_116,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JAUNXQ000000000
VERSION     NZ_JAUNXQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36400380
            Assembly: GCF_030539705.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (feces metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1984279)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Between Cages and Wild: Unraveling the Impact of Captivity on
            Animal Microbiomes and Antimicrobial Resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1984279)
  AUTHORS   Schmartz,G.P., Rehner,J., Schuff,M.J., Becker,S.L., Kravczyk,M.,
            Gurevich,A., Francke,R., Mueller,R., Keller,V. and Keller,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2023) Chair for Clinical Bioinformatics, Center
            for Bioinformatics, Uni-Campus N, E2.1, Saarbruecken, Saarland
            66123, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUNXQ000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_JAUNXQ000000000.  This version
            of the project (01) has the accession number NZ_JAUNXQ010000000,
            and consists of sequences JAUNXQ010000001-JAUNXQ010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.2455918270624x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030539705.1-RS_2024_08_12
            Annotation Date                   :: 08/12/2024 03:46:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,931
            CDSs (total)                      :: 1,895
            Genes (coding)                    :: 1,876
            CDSs (with protein)               :: 1,876
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 6 of 19
            Pseudo Genes (incomplete)         :: 12 of 19
            Pseudo Genes (internal stop)      :: 1 of 19
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984279
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="S28M_St_metabat_116"
                     /isolation_source="feces"
                     /host="Tapirus terrestris"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /geo_loc_name="Germany: Zoo Saarbruecken"
                     /lat_lon="49.2307 N 7.0407 E"
                     /collection_date="2021-11-18"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         JAUNXQ010000001-JAUNXQ010000040
WGS_SCAFLD  NZ_JAUNXQ010000001-NZ_JAUNXQ010000040
//
LOCUS       NZ_JAIWNS010000000   3005800 bp    DNA     linear   ENV 12-AUG-2024
DEFINITION  MAG: Methanospirillum hungatei isolate M59, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAIWNS000000000
VERSION     NZ_JAIWNS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16861154
            Assembly: GCF_020216685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanospirillum hungatei (hot springs metagenome)
  ORGANISM  Methanospirillum hungatei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 3005800)
  AUTHORS   Negi,R.K. and Nagar,S.
  TITLE     Metagenome-assembled genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3005800)
  AUTHORS   Negi,R.K. and Nagar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2020) Department of Zoology, University of Delhi,
            Room No. 18, Department of Zoology, Gate No. 3, Chhatra Marg,
            University of Delhi, Delhi, Delhi 110007, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIWNS000000000.1.
            The Methanospirillum hungatei whole genome shotgun (WGS) project
            has the project accession NZ_JAIWNS000000000.  This version of the
            project (01) has the accession number NZ_JAIWNS010000000, and
            consists of sequences JAIWNS010000001-JAIWNS010000300.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020216685.1-RS_2024_08_12
            Annotation Date                   :: 08/12/2024 03:42:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,096
            CDSs (total)                      :: 3,052
            Genes (coding)                    :: 2,975
            CDSs (with protein)               :: 2,975
            Genes (RNA)                       :: 44
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 9 of 77
            Pseudo Genes (incomplete)         :: 68 of 77
            Pseudo Genes (internal stop)      :: 11 of 77
            Pseudo Genes (multiple problems)  :: 10 of 77
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3005800
                     /organism="Methanospirillum hungatei"
                     /mol_type="genomic DNA"
                     /isolate="M59"
                     /isolation_source="microbial mat"
                     /db_xref="taxon:2203"
                     /environmental_sample
                     /geo_loc_name="India: Khirganga hotspring, Himachal
                     Pradesh, Northern Hiamayas"
                     /lat_lon="31.5934 N 77.3035 E"
                     /collection_date="2017-02-26"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAIWNS010000001-JAIWNS010000300
WGS_SCAFLD  NZ_JAIWNS010000001-NZ_JAIWNS010000300
//
LOCUS       NZ_JAXRUU010000000   3519991 bp    DNA     linear   BCT 12-AUG-2024
DEFINITION  Halorubrum sp. AD140, whole genome shotgun sequencing project.
ACCESSION   NZ_JAXRUU000000000
VERSION     NZ_JAXRUU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36876511
            Assembly: GCF_034497445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. AD140
  ORGANISM  Halorubrum sp. AD140
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3519991)
  AUTHORS   Rodriguez-Cruz,U.E., Castelan-Sanchez,H.G., Madrigal-Trejo,D.,
            Eguiarte,L.E. and Souza,V.
  TITLE     Uncovering novel bacterial and archaeal diversity: genomic insights
            from metagenome-assembled genomes in Cuatro Cienegas, Coahuila
  JOURNAL   Front Microbiol 15, 1369263 (2024)
   PUBMED   38873164
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3519991)
  AUTHORS   Medina-Chavez,N.O., Viladomat-Jasso,M., Zarza,E., Islas-Robles,A.,
            Valdivia-Anistro,J., Thalasso-Siret,F., Eguiarte,L.E.,
            Olmedo-Alvarez,G., Souza,V. and De la Torre-Zavala,S.
  TITLE     A Transiently Hypersaline Microbial Mat Harbors a Diverse and
            Stable Archaeal Community in the Cuatro Cienegas Basin, Mexico
  JOURNAL   Astrobiology 23 (7), 796-811 (2023)
   PUBMED   37279013
REFERENCE   3  (bases 1 to 3519991)
  AUTHORS   Medina-Chavez,N.O. and Rodriguez-Cruz,U.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2023) Departamento de Ecologia Evolutiva,
            Instituto de Ecologia, Circuito exterior sn anexo al Jardin
            Botanico, Mexico, Mexico 04510, Mexico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXRUU000000000.1.
            The Halorubrum sp. AD140 whole genome shotgun (WGS) project has the
            project accession NZ_JAXRUU000000000.  This version of the project
            (01) has the accession number NZ_JAXRUU010000000, and consists of
            sequences JAXRUU010000001-JAXRUU010000369.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v.3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034497445.1-RS_2024_08_12
            Annotation Date                   :: 08/12/2024 08:46:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,798
            CDSs (total)                      :: 3,745
            Genes (coding)                    :: 3,541
            CDSs (with protein)               :: 3,541
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 204
            CDSs (without protein)            :: 204
            Pseudo Genes (ambiguous residues) :: 0 of 204
            Pseudo Genes (frameshifted)       :: 27 of 204
            Pseudo Genes (incomplete)         :: 177 of 204
            Pseudo Genes (internal stop)      :: 17 of 204
            Pseudo Genes (multiple problems)  :: 17 of 204
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3519991
                     /organism="Halorubrum sp. AD140"
                     /mol_type="genomic DNA"
                     /strain="AD140"
                     /isolation_source="slit-clay"
                     /db_xref="taxon:3050073"
                     /geo_loc_name="Mexico: Cuatro Cienegas, Archean Domes"
                     /lat_lon="26.828250 N 102.024639 W"
                     /collection_date="2016-10"
WGS         JAXRUU010000001-JAXRUU010000369
WGS_SCAFLD  NZ_JAXRUU010000001-NZ_JAXRUU010000369
//
LOCUS       NZ_LCTF01000000      2260471 bp    DNA     linear   BCT 14-AUG-2024
DEFINITION  Caldivirga sp. MU80, whole genome shotgun sequencing project.
ACCESSION   NZ_LCTF00000000
VERSION     NZ_LCTF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03580834
            Assembly: GCF_001663375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Caldivirga sp. MU80
  ORGANISM  Caldivirga sp. MU80
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Caldivirga.
REFERENCE   1  (bases 1 to 2260471)
  AUTHORS   Hamilton,T.L., Boyd,E.S., Urschel,M. and Roden,E.
  TITLE     Carbon Source Preference, Uptake Kinetics, and Energetics in a
            Facultatively Autotrophic, Hyperthermophilic Crenarchaeote
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2260471)
  AUTHORS   Hamilton,T.L., Boyd,E.S., Urschel,M. and Roden,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2015) Biological Sciences, University of
            Cincinnati, 831 Rieveschl, Cincinnati, OH 45221, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LCTF00000000.1.
            The Caldivirga sp. MU80 whole genome shotgun (WGS) project has the
            project accession NZ_LCTF00000000.  This version of the project
            (01) has the accession number NZ_LCTF01000000, and consists of
            sequences LCTF01000001-LCTF01000086.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: Velvet v. 1.2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001663375.1-RS_2024_08_14
            Annotation Date                   :: 08/14/2024 01:33:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,391
            CDSs (total)                      :: 2,341
            Genes (coding)                    :: 2,288
            CDSs (with protein)               :: 2,288
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 7 of 53
            Pseudo Genes (incomplete)         :: 48 of 53
            Pseudo Genes (internal stop)      :: 3 of 53
            Pseudo Genes (multiple problems)  :: 4 of 53
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2260471
                     /organism="Caldivirga sp. MU80"
                     /mol_type="genomic DNA"
                     /strain="MU80"
                     /isolation_source="hot spring"
                     /db_xref="taxon:1650354"
                     /geo_loc_name="USA: Yellowstone National Park, WY"
                     /collection_date="2012-05"
WGS         LCTF01000001-LCTF01000086
WGS_SCAFLD  NZ_LCTF01000001-NZ_LCTF01000086
//
LOCUS       NZ_LCWN02000000      2349151 bp    DNA     linear   BCT 14-AUG-2024
DEFINITION  Vulcanisaeta sp. EB80, whole genome shotgun sequencing project.
ACCESSION   NZ_LCWN00000000
VERSION     NZ_LCWN00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03580359
            Assembly: GCF_002078205.2
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta sp. EB80
  ORGANISM  Vulcanisaeta sp. EB80
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1  (bases 1 to 2349151)
  AUTHORS   Urschel,M., Hamilton,T.L. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2017) Biological Sciences, University of
            Cincinnati, 731F Rieveschl, Cincinnati, OH 45221, USA
REFERENCE   2  (bases 1 to 2349151)
  AUTHORS   Hamilton,T.L., Boyd,E.S., Urschel,M. and Roden,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2015) Biological Sciences, University of
            Cincinnati, 831 Rieveschl, Cincinnati, OH 45221, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LCWN00000000.2.
            
            On Jan 11, 2018 this sequence version replaced NZ_LCWN00000000.1.
            The Vulcanisaeta sp. EB80 whole genome shotgun (WGS) project has
            the project accession NZ_LCWN00000000.  This version of the project
            (02) has the accession number NZ_LCWN02000000, and consists of
            sequences LCWN02000001-LCWN02000153.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAR-2015
            Assembly Method        :: Velvet v. 1.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002078205.2-RS_2024_08_14
            Annotation Date                   :: 08/14/2024 02:52:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,685
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,510
            CDSs (with protein)               :: 2,510
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 58
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 11 of 113
            Pseudo Genes (incomplete)         :: 96 of 113
            Pseudo Genes (internal stop)      :: 8 of 113
            Pseudo Genes (multiple problems)  :: 2 of 113
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349151
                     /organism="Vulcanisaeta sp. EB80"
                     /mol_type="genomic DNA"
                     /strain="EB80"
                     /isolation_source="hot spring"
                     /db_xref="taxon:1650660"
                     /geo_loc_name="USA: Yellowstone National Park, WY"
                     /collection_date="2012-05"
WGS         LCWN02000001-LCWN02000153
WGS_SCAFLD  NZ_LCWN02000001-NZ_LCWN02000153
//
LOCUS       NZ_LCWM02000000      1549076 bp    DNA     linear   BCT 14-AUG-2024
DEFINITION  Thermoproteus sp. CP80, whole genome shotgun sequencing project.
ACCESSION   NZ_LCWM00000000
VERSION     NZ_LCWM00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03580358
            Assembly: GCF_002077075.2
KEYWORDS    WGS; RefSeq.
SOURCE      Thermoproteus sp. CP80
  ORGANISM  Thermoproteus sp. CP80
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Thermoproteus.
REFERENCE   1  (bases 1 to 1549076)
  AUTHORS   Urschel,M.R., Hamilton,T.L., Roden,E.E. and Boyd,E.S.
  TITLE     Substrate preference, uptake kinetics and bioenergetics in a
            facultatively autotrophic, thermoacidophilic crenarchaeote
  JOURNAL   FEMS Microbiol Ecol 92 (5), fiw069 (2016)
   PUBMED   27037359
REFERENCE   2  (bases 1 to 1549076)
  AUTHORS   Urshel,M., Hamilton,T.L., Boyd,E.S. and Roden,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2017) Biological Sciences, University of
            Cincinnati, 731F Rieveschl, Cincinnati, OH 45221, USA
REFERENCE   3  (bases 1 to 1549076)
  AUTHORS   Hamilton,T.L., Boyd,E.S., Urschel,M. and Roden,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2015) Biological Sciences, University of
            Cincinnati, 831 Rieveschl, Cincinnati, OH 45221, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LCWM00000000.2.
            
            On Jan 11, 2018 this sequence version replaced NZ_LCWM00000000.1.
            The Thermoproteus sp. CP80 whole genome shotgun (WGS) project has
            the project accession NZ_LCWM00000000.  This version of the project
            (02) has the accession number NZ_LCWM02000000, and consists of
            sequences LCWM02000001-LCWM02000080.
            Bacteria and source DNA available from Thermoproteus sp. CP80.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAR-2015
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002077075.2-RS_2024_08_14
            Annotation Date                   :: 08/14/2024 02:54:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,724
            CDSs (total)                      :: 1,682
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 0 of 34
            Pseudo Genes (incomplete)         :: 34 of 34
            Pseudo Genes (internal stop)      :: 0 of 34
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549076
                     /organism="Thermoproteus sp. CP80"
                     /mol_type="genomic DNA"
                     /strain="CP80"
                     /isolation_source="hot spring"
                     /db_xref="taxon:1650659"
                     /geo_loc_name="USA: Yellowstone National Park, WY"
                     /collection_date="2012-05"
WGS         LCWM02000001-LCWM02000080
WGS_SCAFLD  NZ_LCWM02000001-NZ_LCWM02000080
//
LOCUS       NZ_SNUM01000000      1812151 bp    DNA     linear   BCT 15-AUG-2024
DEFINITION  Thermococcus sp. GR6, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUM00000000
VERSION     NZ_SNUM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963474
            Assembly: GCF_012027415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. GR6
  ORGANISM  Thermococcus sp. GR6
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1812151)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1812151)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUM00000000.1.
            The Thermococcus sp. GR6 whole genome shotgun (WGS) project has the
            project accession NZ_SNUM00000000.  This version of the project
            (01) has the accession number NZ_SNUM01000000, and consists of
            sequences SNUM01000001-SNUM01000008.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 56x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027415.1-RS_2024_08_15
            Annotation Date                   :: 08/15/2024 03:07:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,016
            CDSs (total)                      :: 1,962
            Genes (coding)                    :: 1,946
            CDSs (with protein)               :: 1,946
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 10 of 16
            Pseudo Genes (incomplete)         :: 6 of 16
            Pseudo Genes (internal stop)      :: 3 of 16
            Pseudo Genes (multiple problems)  :: 3 of 16
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812151
                     /organism="Thermococcus sp. GR6"
                     /mol_type="genomic DNA"
                     /strain="GR6"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638256"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUM01000001-SNUM01000008
WGS_SCAFLD  NZ_SNUM01000001-NZ_SNUM01000008
//
LOCUS       NZ_VOLB01000000      2617656 bp    DNA     linear   BCT 16-AUG-2024
DEFINITION  Halorhabdus sp. CUG00001, whole genome shotgun sequencing project.
ACCESSION   NZ_VOLB00000000
VERSION     NZ_VOLB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12430248
            Assembly: GCF_009797925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorhabdus sp. CUG00001
  ORGANISM  Halorhabdus sp. CUG00001
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorhabdus.
REFERENCE   1  (bases 1 to 2617656)
  AUTHORS   Huang,J. and Han,M.
  TITLE     Halorhabdus sp. CUG00001T, an extremely halophilic archaeon from
            Dabuxun Lake, Qinghai-Tibetan Plateau
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2617656)
  AUTHORS   Huang,J. and Han,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2019) China University of Geosciences, State Key
            Laboratory of Biogeology and Environmental Geology, Lumo Road,
            Wuhan, Hebei 430074, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VOLB00000000.1.
            The Halorhabdus sp. CUG00001 whole genome shotgun (WGS) project has
            the project accession NZ_VOLB00000000.  This version of the project
            (01) has the accession number NZ_VOLB01000000, and consists of
            sequence VOLB01000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009797925.1-RS_2024_08_16
            Annotation Date                   :: 08/16/2024 03:34:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,655
            CDSs (total)                      :: 2,604
            Genes (coding)                    :: 2,580
            CDSs (with protein)               :: 2,580
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 4 of 24
            Pseudo Genes (incomplete)         :: 18 of 24
            Pseudo Genes (internal stop)      :: 4 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617656
                     /organism="Halorhabdus sp. CUG00001"
                     /mol_type="genomic DNA"
                     /strain="CUG00001"
                     /isolation_source="surface sediment"
                     /db_xref="taxon:2600297"
                     /geo_loc_name="China: Qinghai-Tibetan Plateau, Dabuxun
                     Lake"
                     /altitude="2683 m"
                     /collection_date="2011-07-10"
                     /collected_by="Hongchen Jiang"
WGS         VOLB01000001
WGS_SCAFLD  NZ_VOLB01000001
//
LOCUS       NZ_SNUN01000000      1939848 bp    DNA     linear   BCT 16-AUG-2024
DEFINITION  Thermococcus sp. GR5, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUN00000000
VERSION     NZ_SNUN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963473
            Assembly: GCF_012027535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. GR5
  ORGANISM  Thermococcus sp. GR5
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1939848)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1939848)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUN00000000.1.
            The Thermococcus sp. GR5 whole genome shotgun (WGS) project has the
            project accession NZ_SNUN00000000.  This version of the project
            (01) has the accession number NZ_SNUN01000000, and consists of
            sequences SNUN01000001-SNUN01000054.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027535.1-RS_2024_08_16
            Annotation Date                   :: 08/16/2024 03:59:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,188
            CDSs (total)                      :: 2,133
            Genes (coding)                    :: 2,104
            CDSs (with protein)               :: 2,104
            Genes (RNA)                       :: 55
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 8 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 1 of 29
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939848
                     /organism="Thermococcus sp. GR5"
                     /mol_type="genomic DNA"
                     /strain="GR5"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638255"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUN01000001-SNUN01000054
WGS_SCAFLD  NZ_SNUN01000001-NZ_SNUN01000054
//
LOCUS       NZ_SNUI01000000      2292008 bp    DNA     linear   BCT 16-AUG-2024
DEFINITION  Thermococcus sp. LS2, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUI00000000
VERSION     NZ_SNUI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963478
            Assembly: GCF_012027375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. LS2
  ORGANISM  Thermococcus sp. LS2
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2292008)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2292008)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUI00000000.1.
            The Thermococcus sp. LS2 whole genome shotgun (WGS) project has the
            project accession NZ_SNUI00000000.  This version of the project
            (01) has the accession number NZ_SNUI01000000, and consists of
            sequences SNUI01000001-SNUI01000043.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 114x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027375.1-RS_2024_08_16
            Annotation Date                   :: 08/16/2024 04:00:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,552
            CDSs (total)                      :: 2,498
            Genes (coding)                    :: 2,450
            CDSs (with protein)               :: 2,450
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 21 of 48
            Pseudo Genes (incomplete)         :: 31 of 48
            Pseudo Genes (internal stop)      :: 0 of 48
            Pseudo Genes (multiple problems)  :: 4 of 48
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292008
                     /organism="Thermococcus sp. LS2"
                     /mol_type="genomic DNA"
                     /strain="LS2"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638260"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUI01000001-SNUI01000043
WGS_SCAFLD  NZ_SNUI01000001-NZ_SNUI01000043
//
LOCUS       NZ_JBFYLB010000000   2236527 bp    DNA     linear   ENV 17-AUG-2024
DEFINITION  MAG: Methanomethylovorans sp. isolate PPR_0024, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBFYLB000000000
VERSION     NZ_JBFYLB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40438322
            Assembly: GCF_041305605.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanomethylovorans sp. (soil metagenome)
  ORGANISM  Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2236527)
  AUTHORS   Bechtold,E.
  TITLE     Metabolic interactions and core taxa underpinning high methane
            fluxes across terrestrial freshwater wetlands
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2236527)
  AUTHORS   Bechtold,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Soil and Crop Sciences, Colorado State
            University, 307 University Ave, Fort Collins, CO 80521, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBFYLB000000000.1.
            The Methanomethylovorans sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBFYLB000000000.  This version of the
            project (01) has the accession number NZ_JBFYLB010000000, and
            consists of sequences JBFYLB010000001-JBFYLB010000179.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: megahit v. v1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22.665631519999998x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041305605.1-RS_2024_08_17
            Annotation Date                   :: 08/17/2024 10:24:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,297
            CDSs (total)                      :: 2,255
            Genes (coding)                    :: 2,216
            CDSs (with protein)               :: 2,216
            Genes (RNA)                       :: 42
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 2 of 39
            Pseudo Genes (incomplete)         :: 35 of 39
            Pseudo Genes (internal stop)      :: 3 of 39
            Pseudo Genes (multiple problems)  :: 1 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236527
                     /organism="Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="PPR_0024"
                     /isolation_source="wetland soil"
                     /db_xref="taxon:2758717"
                     /environmental_sample
                     /geo_loc_name="USA: North Dakota"
                     /collection_date="2022"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBFYLB010000001-JBFYLB010000179
WGS_SCAFLD  NZ_JBFYLB010000001-NZ_JBFYLB010000179
//
LOCUS       NZ_JBFYKZ010000000   2936581 bp    DNA     linear   ENV 17-AUG-2024
DEFINITION  MAG: Methanomethylovorans sp. isolate PPR_0022, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBFYKZ000000000
VERSION     NZ_JBFYKZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40438320
            Assembly: GCF_041305625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanomethylovorans sp. (soil metagenome)
  ORGANISM  Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2936581)
  AUTHORS   Bechtold,E.
  TITLE     Metabolic interactions and core taxa underpinning high methane
            fluxes across terrestrial freshwater wetlands
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2936581)
  AUTHORS   Bechtold,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Soil and Crop Sciences, Colorado State
            University, 307 University Ave, Fort Collins, CO 80521, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBFYKZ000000000.1.
            The Methanomethylovorans sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBFYKZ000000000.  This version of the
            project (01) has the accession number NZ_JBFYKZ010000000, and
            consists of sequences JBFYKZ010000001-JBFYKZ010000309.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: megahit v. v1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.762951860000001x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041305625.1-RS_2024_08_17
            Annotation Date                   :: 08/17/2024 10:27:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,090
            CDSs (total)                      :: 3,036
            Genes (coding)                    :: 2,927
            CDSs (with protein)               :: 2,927
            Genes (RNA)                       :: 54
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 7 of 109
            Pseudo Genes (incomplete)         :: 97 of 109
            Pseudo Genes (internal stop)      :: 10 of 109
            Pseudo Genes (multiple problems)  :: 4 of 109
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936581
                     /organism="Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="PPR_0022"
                     /isolation_source="wetland soil"
                     /db_xref="taxon:2758717"
                     /environmental_sample
                     /geo_loc_name="USA: North Dakota"
                     /collection_date="2022"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBFYKZ010000001-JBFYKZ010000309
WGS_SCAFLD  NZ_JBFYKZ010000001-NZ_JBFYKZ010000309
//
LOCUS       NZ_JAKLTD010000000   1741570 bp    DNA     linear   BCT 18-AUG-2024
DEFINITION  Methanothermobacter sp. K4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKLTD000000000
VERSION     NZ_JAKLTD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25301095
            Assembly: GCF_022014235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanothermobacter sp. K4
  ORGANISM  Methanothermobacter sp. K4
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1741570)
  AUTHORS   Petrov,P.D., Trubitsyn,V.E. and Shcherbakova,V.A.
  TITLE     Draft genome of a new thermophilic methanogenic Archaea from the
            underground biosphere of Western Siberia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1741570)
  AUTHORS   Petrov,P.D., Trubitsyn,V.E. and Shcherbakova,V.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2022) Laboratory of Anaerobic Microorganisms,
            IBPM RAS, Prospect Nauki, Pushchino 142290, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKLTD000000000.1.
            The Methanothermobacter sp. K4 whole genome shotgun (WGS) project
            has the project accession NZ_JAKLTD000000000.  This version of the
            project (01) has the accession number NZ_JAKLTD010000000, and
            consists of sequences JAKLTD010000001-JAKLTD010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-OCT-2021
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1282.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022014235.1-RS_2024_08_18
            Annotation Date                   :: 08/18/2024 03:40:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,855
            CDSs (total)                      :: 1,811
            Genes (coding)                    :: 1,806
            CDSs (with protein)               :: 1,806
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 2 of 5
            Pseudo Genes (incomplete)         :: 3 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741570
                     /organism="Methanothermobacter sp. K4"
                     /mol_type="genomic DNA"
                     /strain="K4"
                     /isolation_source="Water samples from a deep subsurface
                     thermal aquifer"
                     /culture_collection="VKM:B-3410"
                     /db_xref="taxon:2913262"
                     /geo_loc_name="Russia: Tomsk Region, Western Siberia"
                     /lat_lon="58.833333 N 81.50 E"
                     /collection_date="2009-08"
WGS         JAKLTD010000001-JAKLTD010000012
WGS_SCAFLD  NZ_JAKLTD010000001-NZ_JAKLTD010000012
//
LOCUS       NZ_JAUSCG010000000   1835583 bp    DNA     linear   ENV 18-AUG-2024
DEFINITION  MAG: Methanocalculus sp. isolate E9_metabat.bin.14, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAUSCG000000000
VERSION     NZ_JAUSCG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36304572
            Assembly: GCF_030651615.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocalculus sp. (groundwater metagenome)
  ORGANISM  Methanocalculus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 1835583)
  AUTHORS   Diao,M., Li,S., Humez,P., Mosier,D., Kouris,A., Mayer,B. and
            Strous,M.
  TITLE     Cryptic and ubiquitous nitrogen cycling microorganisms in Alberta
            groundwater
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1835583)
  AUTHORS   Diao,M., Li,S., Humez,P., Mosier,D., Kouris,A., Mayer,B. and
            Strous,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2023) Department of Geoscience, University of
            Calgary, 2500 University Drive, Calgary T2N 1N4, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUSCG000000000.1.
            The Methanocalculus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAUSCG000000000.  This version of the project
            (01) has the accession number NZ_JAUSCG010000000, and consists of
            sequences JAUSCG010000001-JAUSCG010000247.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: DAS Tool v. 1.1.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 8.09x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030651615.1-RS_2024_08_18
            Annotation Date                   :: 08/18/2024 05:19:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,081
            CDSs (total)                      :: 2,037
            Genes (coding)                    :: 1,981
            CDSs (with protein)               :: 1,981
            Genes (RNA)                       :: 44
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 1 of 56
            Pseudo Genes (incomplete)         :: 54 of 56
            Pseudo Genes (internal stop)      :: 1 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835583
                     /organism="Methanocalculus sp."
                     /mol_type="genomic DNA"
                     /isolate="E9_metabat.bin.14"
                     /isolation_source="groundwater"
                     /db_xref="taxon:2004547"
                     /environmental_sample
                     /geo_loc_name="Canada: Alberta"
                     /lat_lon="56.98 N 111.85 W"
                     /collection_date="2019-09-17"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JAUSCG010000001-JAUSCG010000247
WGS_SCAFLD  NZ_JAUSCG010000001-NZ_JAUSCG010000247
//
LOCUS       NZ_JAUSPQ010000000   1812670 bp    DNA     linear   ENV 18-AUG-2024
DEFINITION  MAG: Methanocorpusculum sp. isolate E21_metabat.bin.78, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAUSPQ000000000
VERSION     NZ_JAUSPQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36304468
            Assembly: GCF_030655665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocorpusculum sp. (groundwater metagenome)
  ORGANISM  Methanocorpusculum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanocorpusculum.
REFERENCE   1  (bases 1 to 1812670)
  AUTHORS   Diao,M., Li,S., Humez,P., Mosier,D., Kouris,A., Mayer,B. and
            Strous,M.
  TITLE     Cryptic and ubiquitous nitrogen cycling microorganisms in Alberta
            groundwater
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1812670)
  AUTHORS   Diao,M., Li,S., Humez,P., Mosier,D., Kouris,A., Mayer,B. and
            Strous,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2023) Department of Geoscience, University of
            Calgary, 2500 University Drive, Calgary T2N 1N4, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUSPQ000000000.1.
            The Methanocorpusculum sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAUSPQ000000000.  This version of the
            project (01) has the accession number NZ_JAUSPQ010000000, and
            consists of sequences JAUSPQ010000001-JAUSPQ010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: DAS Tool v. 1.1.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 42.25x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030655665.1-RS_2024_08_18
            Annotation Date                   :: 08/18/2024 05:23:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,885
            CDSs (total)                      :: 1,830
            Genes (coding)                    :: 1,827
            CDSs (with protein)               :: 1,827
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 2 of 3
            Pseudo Genes (incomplete)         :: 1 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812670
                     /organism="Methanocorpusculum sp."
                     /mol_type="genomic DNA"
                     /isolate="E21_metabat.bin.78"
                     /isolation_source="groundwater"
                     /db_xref="taxon:2058474"
                     /environmental_sample
                     /geo_loc_name="Canada: Alberta"
                     /lat_lon="57.24 N 111.45 W"
                     /collection_date="2019-10-03"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JAUSPQ010000001-JAUSPQ010000011
WGS_SCAFLD  NZ_JAUSPQ010000001-NZ_JAUSPQ010000011
//
LOCUS       NZ_JAUXNK010000000   2874656 bp    DNA     linear   ENV 20-AUG-2024
DEFINITION  MAG: Methanolobus sp. isolate C1_concoct.bin.76, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAUXNK000000000
VERSION     NZ_JAUXNK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36729376
            Assembly: GCF_030682845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanolobus sp. (groundwater metagenome)
  ORGANISM  Methanolobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 2874656)
  AUTHORS   Li,S., Mosier,D., Kouris,A., Humez,P., Mayer,B., Strous,M. and
            Diao,M.
  TITLE     Ubiquitous hydrogen-oxidizing microorganisms in the groundwater
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2874656)
  AUTHORS   Li,S., Mosier,D., Kouris,A., Humez,P., Mayer,B., Strous,M. and
            Diao,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JUL-2023) Department of Geoscience, University of
            Calgary, 2500 University Drive, Calgary T2N 1N4, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUXNK000000000.1.
            The Methanolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAUXNK000000000.  This version of the project
            (01) has the accession number NZ_JAUXNK010000000, and consists of
            sequences JAUXNK010000001-JAUXNK010000110.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: DAS Tool v. 1.1.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.5x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030682845.1-RS_2024_08_20
            Annotation Date                   :: 08/20/2024 05:48:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,002
            CDSs (total)                      :: 2,951
            Genes (coding)                    :: 2,909
            CDSs (with protein)               :: 2,909
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 9 of 42
            Pseudo Genes (incomplete)         :: 28 of 42
            Pseudo Genes (internal stop)      :: 7 of 42
            Pseudo Genes (multiple problems)  :: 2 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874656
                     /organism="Methanolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="C1_concoct.bin.76"
                     /isolation_source="groundwater"
                     /db_xref="taxon:1874737"
                     /environmental_sample
                     /geo_loc_name="Canada: Alberta"
                     /lat_lon="51.29 N 114.42 W"
                     /collection_date="2019-06-06"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JAUXNK010000001-JAUXNK010000110
WGS_SCAFLD  NZ_JAUXNK010000001-NZ_JAUXNK010000110
//
LOCUS       NZ_JBGKAC010000000   3580614 bp    DNA     linear   BCT 21-AUG-2024
DEFINITION  Halobaculum sp. MBLA0143, whole genome shotgun sequencing project.
ACCESSION   NZ_JBGKAC000000000
VERSION     NZ_JBGKAC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37712913
            Assembly: GCF_041361465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum sp. MBLA0143
  ORGANISM  Halobaculum sp. MBLA0143
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 3580614)
  AUTHORS   Hwang,C.Y., Cho,E.-S. and Seo,M.-J.
  TITLE     Halobaculum sp. MBLA0143 Whole genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3580614)
  AUTHORS   Hwang,C.Y., Cho,E.-S. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-AUG-2024) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGKAC000000000.1.
            The Halobaculum sp. MBLA0143 whole genome shotgun (WGS) project has
            the project accession NZ_JBGKAC000000000.  This version of the
            project (01) has the accession number NZ_JBGKAC010000000, and
            consists of sequences JBGKAC010000001-JBGKAC010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Prof. Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2022
            Assembly Method        :: FLYE v. 2.8.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1093.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041361465.1-RS_2024_08_20
            Annotation Date                   :: 08/20/2024 15:28:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,610
            CDSs (total)                      :: 3,559
            Genes (coding)                    :: 3,504
            CDSs (with protein)               :: 3,504
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 13 of 55
            Pseudo Genes (incomplete)         :: 45 of 55
            Pseudo Genes (internal stop)      :: 2 of 55
            Pseudo Genes (multiple problems)  :: 5 of 55
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3580614
                     /organism="Halobaculum sp. MBLA0143"
                     /mol_type="genomic DNA"
                     /strain="MBLA0143"
                     /isolation_source="solar saltern"
                     /db_xref="taxon:3079933"
                     /geo_loc_name="South Korea: Siheung"
                     /collection_date="2018-03"
WGS         JBGKAC010000001-JBGKAC010000002
WGS_SCAFLD  NZ_JBGKAC010000001-NZ_JBGKAC010000002
//
LOCUS       NZ_JBGKAD010000000   4292040 bp    DNA     linear   BCT 21-AUG-2024
DEFINITION  Halobaculum sp. MBLA0147, whole genome shotgun sequencing project.
ACCESSION   NZ_JBGKAD000000000
VERSION     NZ_JBGKAD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37712946
            Assembly: GCF_041361345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum sp. MBLA0147
  ORGANISM  Halobaculum sp. MBLA0147
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 4292040)
  AUTHORS   Hwang,C.Y., Cho,E.-S. and Seo,M.-J.
  TITLE     Halobaculum sp. MBLA0147 Whole genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4292040)
  AUTHORS   Hwang,C.Y., Cho,E.-S. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-AUG-2024) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGKAD000000000.1.
            The Halobaculum sp. MBLA0147 whole genome shotgun (WGS) project has
            the project accession NZ_JBGKAD000000000.  This version of the
            project (01) has the accession number NZ_JBGKAD010000000, and
            consists of sequences JBGKAD010000001-JBGKAD010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Prof. Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2022
            Assembly Method        :: FLYE v. v2.8.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1471.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041361345.1-RS_2024_08_20
            Annotation Date                   :: 08/20/2024 15:40:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,024
            CDSs (total)                      :: 3,970
            Genes (coding)                    :: 3,919
            CDSs (with protein)               :: 3,919
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 4 of 51
            Pseudo Genes (incomplete)         :: 45 of 51
            Pseudo Genes (internal stop)      :: 7 of 51
            Pseudo Genes (multiple problems)  :: 5 of 51
            CRISPR Arrays                     :: 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4292040
                     /organism="Halobaculum sp. MBLA0147"
                     /mol_type="genomic DNA"
                     /strain="MBLA0147"
                     /isolation_source="solar saltern"
                     /db_xref="taxon:3079934"
                     /geo_loc_name="South Korea: Siheung"
                     /collection_date="2018-03"
WGS         JBGKAD010000001-JBGKAD010000006
WGS_SCAFLD  NZ_JBGKAD010000001-NZ_JBGKAD010000006
//
LOCUS       NZ_JABGBQ010000000   2366205 bp    DNA     linear   BCT 25-AUG-2024
DEFINITION  Acidianus sp. RZ1 strain DSM 29099, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JABGBQ000000000
VERSION     NZ_JABGBQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14829352
            Assembly: GCF_013133895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidianus sp. RZ1
  ORGANISM  Acidianus sp. RZ1
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Acidianus.
REFERENCE   1  (bases 1 to 2366205)
  AUTHORS   Zhang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2020) Geomicrobiology, Federal Institute for
            Geosciences and Natural Resources, Stilleweg 2, Hannover, NS 30655,
            Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABGBQ000000000.1.
            The Acidianus sp. RZ1 whole genome shotgun (WGS) project has the
            project accession NZ_JABGBQ000000000.  This version of the project
            (01) has the accession number NZ_JABGBQ010000000, and consists of
            sequences JABGBQ010000001-JABGBQ010000746.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Geomicrobiology Unit,
            Federal Institute for Geosciences and Natural Resources, 30655
            Hannover, Germany.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 132.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013133895.1-RS_2024_08_25
            Annotation Date                   :: 08/25/2024 04:00:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,684
            CDSs (total)                      :: 2,652
            Genes (coding)                    :: 2,446
            CDSs (with protein)               :: 2,446
            Genes (RNA)                       :: 32
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 206
            CDSs (without protein)            :: 206
            Pseudo Genes (ambiguous residues) :: 0 of 206
            Pseudo Genes (frameshifted)       :: 17 of 206
            Pseudo Genes (incomplete)         :: 181 of 206
            Pseudo Genes (internal stop)      :: 10 of 206
            Pseudo Genes (multiple problems)  :: 2 of 206
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366205
                     /organism="Acidianus sp. RZ1"
                     /mol_type="genomic DNA"
                     /strain="DSM 29099"
                     /isolation_source="hot spring"
                     /culture_collection="DSM:29099"
                     /db_xref="taxon:1540082"
                     /geo_loc_name="Argentina"
                     /collection_date="2011"
WGS         JABGBQ010000001-JABGBQ010000746
WGS_SCAFLD  NZ_JABGBQ010000001-NZ_JABGBQ010000746
//
LOCUS       NZ_JBGMEB010000000   2843392 bp    DNA     linear   ENV 26-AUG-2024
DEFINITION  MAG: Methanomethylovorans sp. isolate DMCM, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGMEB000000000
VERSION     NZ_JBGMEB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN42316427
            Assembly: GCF_041447285.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanomethylovorans sp. (sediment metagenome)
  ORGANISM  Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2843392)
  AUTHORS   Wang,J., Yang,S. and Yang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2024) Contaminated Ecosystem Microbial Processes,
            Institute of Applied Ecology, Renhe street, Shenyang, Liaoning
            110121, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGMEB000000000.1.
            The Methanomethylovorans sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGMEB000000000.  This version of the
            project (01) has the accession number NZ_JBGMEB010000000, and
            consists of sequences JBGMEB010000001-JBGMEB010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Jingjing Wang.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: JGI Metagenome Assembly Pipeline v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041447285.1-RS_2024_08_26
            Annotation Date                   :: 08/26/2024 02:21:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,762
            CDSs (total)                      :: 2,712
            Genes (coding)                    :: 2,687
            CDSs (with protein)               :: 2,687
            Genes (RNA)                       :: 50
            rRNAs                             :: 3 (5S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 6 of 25
            Pseudo Genes (incomplete)         :: 16 of 25
            Pseudo Genes (internal stop)      :: 9 of 25
            Pseudo Genes (multiple problems)  :: 4 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843392
                     /organism="Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="DMCM"
                     /isolation_source="river sediment"
                     /db_xref="taxon:2758717"
                     /environmental_sample
                     /geo_loc_name="China"
                     /lat_lon="41.62 N 123.06 E"
                     /collection_date="2023"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JBGMEB010000001-JBGMEB010000026
WGS_SCAFLD  NZ_JBGMEB010000001-NZ_JBGMEB010000026
//
LOCUS       NZ_JALJXW010000000   1957917 bp    DNA     linear   BCT 27-AUG-2024
DEFINITION  Methanocalculus sp. AMF5, whole genome shotgun sequencing project.
ACCESSION   NZ_JALJXW000000000
VERSION     NZ_JALJXW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18243395
            Assembly: GCF_024170265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocalculus sp. AMF5
  ORGANISM  Methanocalculus sp. AMF5
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 1957917)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the
            genomes of soil and plant-associated and newly described type
            strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1957917)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALJXW000000000.1.
            The Methanocalculus sp. AMF5 whole genome shotgun (WGS) project has
            the project accession NZ_JALJXW000000000.  This version of the
            project (01) has the accession number NZ_JALJXW010000000, and
            consists of sequences JALJXW010000001-JALJXW010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 655.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024170265.1-RS_2024_08_27
            Annotation Date                   :: 08/27/2024 05:49:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,010
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,957
            CDSs (with protein)               :: 1,957
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 2 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957917
                     /organism="Methanocalculus sp. AMF5"
                     /mol_type="genomic DNA"
                     /strain="AMF5"
                     /db_xref="taxon:1198257"
WGS         JALJXW010000001-JALJXW010000025
WGS_SCAFLD  NZ_JALJXW010000001-NZ_JALJXW010000025
//
LOCUS       NZ_JBEPXO010000000   3648005 bp    DNA     linear   ENV 31-AUG-2024
DEFINITION  MAG: Salinigranum sp. isolate 02_S197.semibin_refined.001, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBEPXO000000000
VERSION     NZ_JBEPXO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39825470
            Assembly: GCF_041641895.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Salinigranum sp. (hypersaline lake metagenome)
  ORGANISM  Salinigranum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Salinigranum.
REFERENCE   1  (bases 1 to 3648005)
  AUTHORS   Mumcu,H., Zaugg,J., Keles,I., Kayrav,A., Balci,N., Nelson,D.,
            Hugenholtz,P., Gillam,E. and Gul-Karaguler,N.
  TITLE     Novel P450s from Extreme Regions of Turkey by Metagenomics Analysis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3648005)
  AUTHORS   Zaugg,J. and Gul-Karaguler,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-FEB-2024) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, University of Queensland,
            68 Cooper road, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEPXO000000000.1.
            The Salinigranum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBEPXO000000000.  This version of the project
            (01) has the accession number NZ_JBEPXO010000000, and consists of
            sequences JBEPXO010000001-JBEPXO010000153.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 28-AUG-2023
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3.31x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041641895.1-RS_2024_08_31
            Annotation Date                   :: 08/31/2024 09:23:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,819
            CDSs (total)                      :: 3,764
            Genes (coding)                    :: 3,693
            CDSs (with protein)               :: 3,693
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 10 of 71
            Pseudo Genes (incomplete)         :: 65 of 71
            Pseudo Genes (internal stop)      :: 1 of 71
            Pseudo Genes (multiple problems)  :: 5 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3648005
                     /organism="Salinigranum sp."
                     /mol_type="genomic DNA"
                     /isolate="02_S197.semibin_refined.001"
                     /isolation_source="lake sediment"
                     /db_xref="taxon:1966351"
                     /environmental_sample
                     /geo_loc_name="Turkey: Balikesir Gomec"
                     /lat_lon="39.386373 N 26.835452 E"
                     /collection_date="2019-07-01"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JBEPXO010000001-JBEPXO010000153
WGS_SCAFLD  NZ_JBEPXO010000001-NZ_JBEPXO010000153
//
LOCUS       NZ_JARRIB010000000   2052334 bp    DNA     linear   BCT 31-AUG-2024
DEFINITION  Pyrococcus kukulkanii strain LMOA29, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIB000000000
VERSION     NZ_JARRIB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962731
            Assembly: GCF_041647995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 2052334)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2052334)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIB000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIB000000000.  This version of the
            project (01) has the accession number NZ_JARRIB010000000, and
            consists of sequences JARRIB010000001-JARRIB010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647995.1-RS_2024_08_31
            Annotation Date                   :: 08/31/2024 00:28:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,347
            CDSs (total)                      :: 2,279
            Genes (coding)                    :: 2,231
            CDSs (with protein)               :: 2,231
            Genes (RNA)                       :: 68
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 23 of 48
            Pseudo Genes (incomplete)         :: 28 of 48
            Pseudo Genes (internal stop)      :: 2 of 48
            Pseudo Genes (multiple problems)  :: 5 of 48
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052334
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA29"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIB010000001-JARRIB010000009
WGS_SCAFLD  NZ_JARRIB010000001-NZ_JARRIB010000009
//
LOCUS       NZ_JBAZQA010000000   3132087 bp    DNA     linear   ENV 31-AUG-2024
DEFINITION  MAG: Methanoregula sp. isolate SO_2017_SWC_42, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBAZQA000000000
VERSION     NZ_JBAZQA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39904682
            Assembly: GCF_041645475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (landfill metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 3132087)
  AUTHORS   Ippolito,I. and Hug,L.A.
  TITLE     Antimicrobial resistance gene diversity, prevalence, and mobility
            within four landfills
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3132087)
  AUTHORS   Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2024) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAZQA000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAZQA000000000.  This version of the project
            (01) has the accession number NZ_JBAZQA010000000, and consists of
            sequences JBAZQA010000001-JBAZQA010000034.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1_36
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80.8957220277406x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041645475.1-RS_2024_08_31
            Annotation Date                   :: 08/31/2024 09:14:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,084
            CDSs (total)                      :: 3,032
            Genes (coding)                    :: 3,015
            CDSs (with protein)               :: 3,015
            Genes (RNA)                       :: 52
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 2 of 17
            Pseudo Genes (incomplete)         :: 13 of 17
            Pseudo Genes (internal stop)      :: 3 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3132087
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SO_2017_SWC_42"
                     /isolation_source="leachate from a stormwater catchment at
                     an active municipal landfill in Southern Ontario"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Canada: Waterloo"
                     /lat_lon="43.44 N 80.58 W"
                     /collection_date="2017-10"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JBAZQA010000001-JBAZQA010000034
WGS_SCAFLD  NZ_JBAZQA010000001-NZ_JBAZQA010000034
//
LOCUS       NZ_JBAYLY010000000   2956936 bp    DNA     linear   ENV 31-AUG-2024
DEFINITION  MAG: Methanoregula sp. isolate SO_2016_LW1_26, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBAYLY000000000
VERSION     NZ_JBAYLY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39889837
            Assembly: GCF_041663825.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (landfill metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2956936)
  AUTHORS   Ippolito,I. and Hug,L.A.
  TITLE     Antimicrobial resistance gene diversity, prevalence, and mobility
            within four landfills
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2956936)
  AUTHORS   Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2024) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAYLY000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAYLY000000000.  This version of the project
            (01) has the accession number NZ_JBAYLY010000000, and consists of
            sequences JBAYLY010000001-JBAYLY010000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1_36
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 42.32x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041663825.1-RS_2024_08_31
            Annotation Date                   :: 08/31/2024 09:29:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,006
            CDSs (total)                      :: 2,950
            Genes (coding)                    :: 2,908
            CDSs (with protein)               :: 2,908
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 9 of 42
            Pseudo Genes (incomplete)         :: 36 of 42
            Pseudo Genes (internal stop)      :: 6 of 42
            Pseudo Genes (multiple problems)  :: 7 of 42
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956936
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SO_2016_LW1_26"
                     /isolation_source="leachate from a leachate well at an
                     active municipal landfill in Southern Ontario"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Canada: Waterloo"
                     /lat_lon="43.44 N 80.58 W"
                     /collection_date="2016-07"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JBAYLY010000001-JBAYLY010000068
WGS_SCAFLD  NZ_JBAYLY010000001-NZ_JBAYLY010000068
//
LOCUS       NZ_JBDNIZ010000000   2879300 bp    DNA     linear   ENV 31-AUG-2024
DEFINITION  MAG: Halolamina sp. isolate metabat2.3.ELB, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBDNIZ000000000
VERSION     NZ_JBDNIZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38376587
            Assembly: GCF_041688025.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halolamina sp. (freshwater metagenome)
  ORGANISM  Halolamina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2879300)
  AUTHORS   Lee,H., Hwang,K., Cho,A., Kim,S., Kim,M., Morgan-Kiss,R.,
            Priscu,J.C., Kim,K.M. and Kim,O.S.
  TITLE     Microbial assemblages and associated biogeochemical processes in
            Lake Bonney, a permanently ice-covered lake in the McMurdo Dry
            Valleys, Antarctica
  JOURNAL   Environ Microbiome 19 (1), 60 (2024)
   PUBMED   39160591
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2879300)
  AUTHORS   Lee,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2023) Division of Life Sciences, Korea Polar
            Research Institute, 26, Sondomirae-ro, Incheon 21990, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDNIZ000000000.1.
            The Halolamina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBDNIZ000000000.  This version of the project
            (01) has the accession number NZ_JBDNIZ010000000, and consists of
            sequences JBDNIZ010000001-JBDNIZ010000089.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 40x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041688025.1-RS_2024_08_31
            Annotation Date                   :: 08/31/2024 09:57:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,046
            CDSs (total)                      :: 3,000
            Genes (coding)                    :: 2,855
            CDSs (with protein)               :: 2,855
            Genes (RNA)                       :: 46
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 54 of 145
            Pseudo Genes (incomplete)         :: 116 of 145
            Pseudo Genes (internal stop)      :: 15 of 145
            Pseudo Genes (multiple problems)  :: 36 of 145
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879300
                     /organism="Halolamina sp."
                     /mol_type="genomic DNA"
                     /isolate="metabat2.3.ELB"
                     /isolation_source="freshwater"
                     /db_xref="taxon:1940283"
                     /environmental_sample
                     /geo_loc_name="Antarctica: Lake Bonney, east lobe"
                     /collection_date="2017-11"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         JBDNIZ010000001-JBDNIZ010000089
WGS_SCAFLD  NZ_JBDNIZ010000001-NZ_JBDNIZ010000089
//
LOCUS       NZ_JAXOJW010000000   1851101 bp    DNA     linear   BCT 01-SEP-2024
DEFINITION  Methanobrevibacter smithii DSM 11975 strain B181, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXOJW000000000
VERSION     NZ_JAXOJW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38759361
            Assembly: GCF_037389515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii DSM 11975
  ORGANISM  Methanobrevibacter smithii DSM 11975
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1851101)
  AUTHORS   Plugge,C.M., Berkhout,M.D., Galani,A., Wang,T. and Belzer,C.
  TITLE     Draft genome sequence of Methanobrevibacter smithii strain B181,
            isolated from a fecal sample
  JOURNAL   Microbiol Resour Announc 13 (7), e0032024 (2024)
   PUBMED   38864656
REFERENCE   2  (bases 1 to 1851101)
  AUTHORS   Berkhout,M.D., Plugge,C.M., Galani,A., Wang,T. and Belzer,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2023) Laboratory of Microbiology, Wageningen
            University and Research, Stippeneng 4, Wageningen, Gelderland 6708
            WE, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXOJW000000000.1.
            The Methanobrevibacter smithii DSM 11975 whole genome shotgun (WGS)
            project has the project accession NZ_JAXOJW000000000.  This version
            of the project (01) has the accession number NZ_JAXOJW010000000,
            and consists of sequences JAXOJW010000001-JAXOJW010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSM 11975.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3306.38x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037389515.1-RS_2024_09_01
            Annotation Date                   :: 09/01/2024 15:12:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,788
            Genes (coding)                    :: 1,768
            CDSs (with protein)               :: 1,768
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 9 of 20
            Pseudo Genes (incomplete)         :: 11 of 20
            Pseudo Genes (internal stop)      :: 2 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851101
                     /organism="Methanobrevibacter smithii DSM 11975"
                     /mol_type="genomic DNA"
                     /strain="B181"
                     /host="Homo sapiens"
                     /culture_collection="DSM:11975"
                     /db_xref="taxon:521001"
                     /geo_loc_name="Netherlands: Wageningen"
                     /collection_date="2023-04"
WGS         JAXOJW010000001-JAXOJW010000020
WGS_SCAFLD  NZ_JAXOJW010000001-NZ_JAXOJW010000020
//
LOCUS       NZ_BBBA01000000      2387907 bp    DNA     linear   BCT 02-SEP-2024
DEFINITION  Metallosphaera hakonensis JCM 8857 = DSM 7519 strain JCM 8857,
            whole genome shotgun sequencing project.
ACCESSION   NZ_BBBA00000000
VERSION     NZ_BBBA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000474
            Sequence Read Archive: DRR017680
            Assembly: GCF_001315825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Metallosphaera hakonensis JCM 8857 = DSM 7519
  ORGANISM  Metallosphaera hakonensis JCM 8857 = DSM 7519
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2387907)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBA00000000.1.
            The Metallosphaera hakonensis JCM 8857 = DSM 7519 whole genome
            shotgun (WGS) project has the project accession NZ_BBBA00000000.
            This version of the project (01) has the accession number
            NZ_BBBA01000000, and consists of sequences
            BBBA01000001-BBBA01000129.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 32x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001315825.1-RS_2024_09_02
            Annotation Date                   :: 09/02/2024 01:08:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,834
            CDSs (total)                      :: 2,783
            Genes (coding)                    :: 2,177
            CDSs (with protein)               :: 2,177
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 606
            CDSs (without protein)            :: 606
            Pseudo Genes (ambiguous residues) :: 0 of 606
            Pseudo Genes (frameshifted)       :: 527 of 606
            Pseudo Genes (incomplete)         :: 105 of 606
            Pseudo Genes (internal stop)      :: 25 of 606
            Pseudo Genes (multiple problems)  :: 43 of 606
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2387907
                     /organism="Metallosphaera hakonensis JCM 8857 = DSM 7519"
                     /mol_type="genomic DNA"
                     /strain="JCM 8857"
                     /culture_collection="JCM:8857"
                     /type_material="type strain of Metallosphaera hakonensis"
                     /db_xref="taxon:1293036"
WGS         BBBA01000001-BBBA01000129
WGS_SCAFLD  NZ_BBBA01000001-NZ_BBBA01000129
//
LOCUS       NZ_BMQS01000000      2347010 bp    DNA     linear   BCT 02-SEP-2024
DEFINITION  Sulfodiicoccus acidiphilus strain JCM 31740, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMQS00000000
VERSION     NZ_BMQS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245330
            Assembly: GCF_014648235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfodiicoccus acidiphilus
  ORGANISM  Sulfodiicoccus acidiphilus
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfodiicoccus.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2347010)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMQS00000000.1.
            The Sulfodiicoccus acidiphilus whole genome shotgun (WGS) project
            has the project accession NZ_BMQS00000000.  This version of the
            project (01) has the accession number NZ_BMQS01000000, and consists
            of sequences BMQS01000001-BMQS01000050.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10007116
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 162X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014648235.1-RS_2024_09_02
            Annotation Date                   :: 09/02/2024 03:03:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,361
            CDSs (total)                      :: 2,310
            Genes (coding)                    :: 2,227
            CDSs (with protein)               :: 2,227
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 43 of 83
            Pseudo Genes (incomplete)         :: 56 of 83
            Pseudo Genes (internal stop)      :: 21 of 83
            Pseudo Genes (multiple problems)  :: 28 of 83
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347010
                     /organism="Sulfodiicoccus acidiphilus"
                     /mol_type="genomic DNA"
                     /strain="JCM 31740"
                     /culture_collection="JCM:31740"
                     /type_material="type strain of Sulfodiicoccus acidiphilus"
                     /db_xref="taxon:1670455"
WGS         BMQS01000001-BMQS01000050
WGS_SCAFLD  NZ_BMQS01000001-NZ_BMQS01000050
//
LOCUS       NZ_BMNM01000000      2424395 bp    DNA     linear   BCT 02-SEP-2024
DEFINITION  Vulcanisaeta souniana JCM 11219, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BMNM00000000
VERSION     NZ_BMNM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245222
            Assembly: GCF_014646555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta souniana JCM 11219
  ORGANISM  Vulcanisaeta souniana JCM 11219
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2424395)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMNM00000000.1.
            The Vulcanisaeta souniana JCM 11219 whole genome shotgun (WGS)
            project has the project accession NZ_BMNM00000000.  This version of
            the project (01) has the accession number NZ_BMNM01000000, and
            consists of sequences BMNM01000001-BMNM01000026.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10007112
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 162X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014646555.1-RS_2024_09_02
            Annotation Date                   :: 09/02/2024 03:00:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,649
            CDSs (total)                      :: 2,599
            Genes (coding)                    :: 2,558
            CDSs (with protein)               :: 2,558
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 10 of 41
            Pseudo Genes (incomplete)         :: 29 of 41
            Pseudo Genes (internal stop)      :: 6 of 41
            Pseudo Genes (multiple problems)  :: 4 of 41
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424395
                     /organism="Vulcanisaeta souniana JCM 11219"
                     /mol_type="genomic DNA"
                     /strain="JCM 11219"
                     /culture_collection="JCM:11219"
                     /type_material="type strain of Vulcanisaeta souniana"
                     /db_xref="taxon:1293586"
WGS         BMNM01000001-BMNM01000026
WGS_SCAFLD  NZ_BMNM01000001-NZ_BMNM01000026
//
LOCUS       NZ_JBGTCZ010000000   1702992 bp    DNA     linear   ENV 06-SEP-2024
DEFINITION  MAG: Acidianus infernus isolate Re.bin.131, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGTCZ000000000
VERSION     NZ_JBGTCZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41306070
            Assembly: GCF_041748595.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Acidianus infernus (hot springs metagenome)
  ORGANISM  Acidianus infernus
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Acidianus.
REFERENCE   1  (bases 1 to 1702992)
  AUTHORS   Ugwuanyi,I.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAY-2024) Earth and Environmental Sciences, Rutgers
            University, 101 Warren Street, Newark, NJ 07102, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGTCZ000000000.1.
            The Acidianus infernus whole genome shotgun (WGS) project has the
            project accession NZ_JBGTCZ000000000.  This version of the project
            (01) has the accession number NZ_JBGTCZ010000000, and consists of
            sequences JBGTCZ010000001-JBGTCZ010000132.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041748595.1-RS_2024_09_06
            Annotation Date                   :: 09/06/2024 11:04:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,050
            CDSs (total)                      :: 2,001
            Genes (coding)                    :: 1,900
            CDSs (with protein)               :: 1,900
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 26 of 101
            Pseudo Genes (incomplete)         :: 73 of 101
            Pseudo Genes (internal stop)      :: 17 of 101
            Pseudo Genes (multiple problems)  :: 14 of 101
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702992
                     /organism="Acidianus infernus"
                     /mol_type="genomic DNA"
                     /isolate="Re.bin.131"
                     /isolation_source="travertine gravel"
                     /db_xref="taxon:12915"
                     /environmental_sample
                     /geo_loc_name="Norway: Svalbard, Jotun geothermal spring"
                     /lat_lon="79.5488889 N 13.351944 E"
                     /collection_date="2011-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBGTCZ010000001-JBGTCZ010000132
WGS_SCAFLD  NZ_JBGTCZ010000001-NZ_JBGTCZ010000132
//
LOCUS       NZ_JAVDDX010000000   4189745 bp    DNA     linear   BCT 07-SEP-2024
DEFINITION  Haloarcula sp. H-GB4, whole genome shotgun sequencing project.
ACCESSION   NZ_JAVDDX000000000
VERSION     NZ_JAVDDX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36994296
            Assembly: GCF_030848575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. H-GB4
  ORGANISM  Haloarcula sp. H-GB4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4189745)
  AUTHORS   Sorokin,D.Y., Abbas,B. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4189745)
  AUTHORS   Sorokin,D.Y., Abbas,B. and Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVDDX000000000.1.
            The Haloarcula sp. H-GB4 whole genome shotgun (WGS) project has the
            project accession NZ_JAVDDX000000000.  This version of the project
            (01) has the accession number NZ_JAVDDX010000000, and consists of
            sequences JAVDDX010000001-JAVDDX010000015.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030848575.1-RS_2024_09_07
            Annotation Date                   :: 09/07/2024 06:36:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,269
            CDSs (total)                      :: 4,217
            Genes (coding)                    :: 4,130
            CDSs (with protein)               :: 4,130
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 38 of 87
            Pseudo Genes (incomplete)         :: 66 of 87
            Pseudo Genes (internal stop)      :: 20 of 87
            Pseudo Genes (multiple problems)  :: 30 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4189745
                     /organism="Haloarcula sp. H-GB4"
                     /mol_type="genomic DNA"
                     /strain="H-GB4"
                     /isolation_source="aerobic sediments from hypersaline salt
                     lake"
                     /db_xref="taxon:3069755"
                     /geo_loc_name="Russia: Altai region, Kulunda Steppe"
                     /collection_date="2018-08-08"
WGS         JAVDDX010000001-JAVDDX010000015
WGS_SCAFLD  NZ_JAVDDX010000001-NZ_JAVDDX010000015
//
LOCUS       NZ_JBGUBB010000000   4122811 bp    DNA     linear   BCT 08-SEP-2024
DEFINITION  Natronorubrum sp. A-ect3, whole genome shotgun sequencing project.
ACCESSION   NZ_JBGUBB000000000
VERSION     NZ_JBGUBB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43145791
            Assembly: GCF_041821125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum sp. A-ect3
  ORGANISM  Natronorubrum sp. A-ect3
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4122811)
  AUTHORS   Sorokin,D.Y., Merkel,A.Y., Messina,E. and Yakimov,M.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4122811)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-AUG-2024) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUBB000000000.1.
            The Natronorubrum sp. A-ect3 whole genome shotgun (WGS) project has
            the project accession NZ_JBGUBB000000000.  This version of the
            project (01) has the accession number NZ_JBGUBB010000000, and
            consists of sequences JBGUBB010000001-JBGUBB010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 450x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041821125.1-RS_2024_09_07
            Annotation Date                   :: 09/07/2024 12:25:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,029
            CDSs (total)                      :: 3,977
            Genes (coding)                    :: 3,916
            CDSs (with protein)               :: 3,916
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 23 of 61
            Pseudo Genes (incomplete)         :: 51 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 17 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4122811
                     /organism="Natronorubrum sp. A-ect3"
                     /mol_type="genomic DNA"
                     /strain="A-ect3"
                     /isolation_source="Mixed surface oxic sediment and brine
                     sample from hypersaline soda lakes"
                     /db_xref="taxon:3242698"
                     /geo_loc_name="Russia: Altai Region, Kulunda Steppe"
                     /collection_date="2022-07"
WGS         JBGUBB010000001-JBGUBB010000029
WGS_SCAFLD  NZ_JBGUBB010000001-NZ_JBGUBB010000029
//
LOCUS       NZ_JBGUAZ010000000   3732888 bp    DNA     linear   BCT 08-SEP-2024
DEFINITION  Natrinema sp. HArc-T2, whole genome shotgun sequencing project.
ACCESSION   NZ_JBGUAZ000000000
VERSION     NZ_JBGUAZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43145794
            Assembly: GCF_041821085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema sp. HArc-T2
  ORGANISM  Natrinema sp. HArc-T2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3732888)
  AUTHORS   Sorokin,D.Y., Merkel,A.Y., Messina,E. and Yakimov,M.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3732888)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-AUG-2024) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUAZ000000000.1.
            The Natrinema sp. HArc-T2 whole genome shotgun (WGS) project has
            the project accession NZ_JBGUAZ000000000.  This version of the
            project (01) has the accession number NZ_JBGUAZ010000000, and
            consists of sequences JBGUAZ010000001-JBGUAZ010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 470x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041821085.1-RS_2024_09_07
            Annotation Date                   :: 09/07/2024 12:29:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,766
            CDSs (total)                      :: 3,708
            Genes (coding)                    :: 3,639
            CDSs (with protein)               :: 3,639
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 32 of 69
            Pseudo Genes (incomplete)         :: 42 of 69
            Pseudo Genes (internal stop)      :: 17 of 69
            Pseudo Genes (multiple problems)  :: 19 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3732888
                     /organism="Natrinema sp. HArc-T2"
                     /mol_type="genomic DNA"
                     /strain="HArc-T2"
                     /isolation_source="Mixed surface oxic sediment and brine
                     sample from hypersaline salt lakes"
                     /db_xref="taxon:3242701"
                     /geo_loc_name="Russia: Altai Region, Kulunda Steppe"
                     /collection_date="2022-07"
WGS         JBGUAZ010000001-JBGUAZ010000032
WGS_SCAFLD  NZ_JBGUAZ010000001-NZ_JBGUAZ010000032
//
LOCUS       NZ_JBGUBA010000000   3856892 bp    DNA     linear   BCT 08-SEP-2024
DEFINITION  Natrinema sp. H-ect1, whole genome shotgun sequencing project.
ACCESSION   NZ_JBGUBA000000000
VERSION     NZ_JBGUBA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43145793
            Assembly: GCF_041821105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema sp. H-ect1
  ORGANISM  Natrinema sp. H-ect1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3856892)
  AUTHORS   Sorokin,D.Y., Merkel,A.Y., Messina,E. and Yakimov,M.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3856892)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-AUG-2024) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUBA000000000.1.
            The Natrinema sp. H-ect1 whole genome shotgun (WGS) project has the
            project accession NZ_JBGUBA000000000.  This version of the project
            (01) has the accession number NZ_JBGUBA010000000, and consists of
            sequences JBGUBA010000001-JBGUBA010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 460x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041821105.1-RS_2024_09_07
            Annotation Date                   :: 09/07/2024 12:32:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,890
            CDSs (total)                      :: 3,838
            Genes (coding)                    :: 3,789
            CDSs (with protein)               :: 3,789
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 22 of 49
            Pseudo Genes (incomplete)         :: 33 of 49
            Pseudo Genes (internal stop)      :: 8 of 49
            Pseudo Genes (multiple problems)  :: 12 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3856892
                     /organism="Natrinema sp. H-ect1"
                     /mol_type="genomic DNA"
                     /strain="H-ect1"
                     /isolation_source="Mixed surface oxic sediment and brine
                     sample from hypersaline salt lakes"
                     /db_xref="taxon:3242700"
                     /geo_loc_name="Russia: Altai Region, Kulunda Steppe"
                     /collection_date="2022-07"
WGS         JBGUBA010000001-JBGUBA010000027
WGS_SCAFLD  NZ_JBGUBA010000001-NZ_JBGUBA010000027
//
LOCUS       NZ_JBGUBC010000000   3235069 bp    DNA     linear   BCT 08-SEP-2024
DEFINITION  Halopenitus sp. H-Gu1, whole genome shotgun sequencing project.
ACCESSION   NZ_JBGUBC000000000
VERSION     NZ_JBGUBC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43145790
            Assembly: GCF_041821145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopenitus sp. H-Gu1
  ORGANISM  Halopenitus sp. H-Gu1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halopenitus.
REFERENCE   1  (bases 1 to 3235069)
  AUTHORS   Sorokin,D.Y., Merkel,A.Y., Messina,E. and Yakimov,M.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3235069)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-AUG-2024) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUBC000000000.1.
            The Halopenitus sp. H-Gu1 whole genome shotgun (WGS) project has
            the project accession NZ_JBGUBC000000000.  This version of the
            project (01) has the accession number NZ_JBGUBC010000000, and
            consists of sequences JBGUBC010000001-JBGUBC010000071.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 570x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041821145.1-RS_2024_09_07
            Annotation Date                   :: 09/07/2024 12:28:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,238
            CDSs (total)                      :: 3,185
            Genes (coding)                    :: 3,111
            CDSs (with protein)               :: 3,111
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 18 of 74
            Pseudo Genes (incomplete)         :: 62 of 74
            Pseudo Genes (internal stop)      :: 7 of 74
            Pseudo Genes (multiple problems)  :: 12 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3235069
                     /organism="Halopenitus sp. H-Gu1"
                     /mol_type="genomic DNA"
                     /strain="H-Gu1"
                     /isolation_source="Mixed surface oxic sediment and brine
                     sample from hypersaline salt lakes"
                     /db_xref="taxon:3242697"
                     /geo_loc_name="Russia: Altai Region, Kulunda Steppe"
                     /collection_date="2022-07"
WGS         JBGUBC010000001-JBGUBC010000071
WGS_SCAFLD  NZ_JBGUBC010000001-NZ_JBGUBC010000071
//
LOCUS       NZ_JALLPK010000000   5317764 bp    DNA     linear   BCT 08-SEP-2024
DEFINITION  Halocatena marina strain DFN5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLPK000000000
VERSION     NZ_JALLPK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27554123
            Assembly: GCF_023276375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halocatena marina
  ORGANISM  Halocatena marina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halocatena.
REFERENCE   1  (bases 1 to 5317764)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5317764)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-APR-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLPK000000000.1.
            The Halocatena marina whole genome shotgun (WGS) project has the
            project accession NZ_JALLPK000000000.  This version of the project
            (01) has the accession number NZ_JALLPK010000000, and consists of
            sequences JALLPK010000001-JALLPK010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 241.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023276375.1-RS_2024_09_08
            Annotation Date                   :: 09/08/2024 05:53:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,133
            CDSs (total)                      :: 5,082
            Genes (coding)                    :: 4,944
            CDSs (with protein)               :: 4,944
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 58 of 138
            Pseudo Genes (incomplete)         :: 100 of 138
            Pseudo Genes (internal stop)      :: 48 of 138
            Pseudo Genes (multiple problems)  :: 55 of 138
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5317764
                     /organism="Halocatena marina"
                     /mol_type="genomic DNA"
                     /strain="DFN5"
                     /isolation_source="sea mud"
                     /type_material="type strain of Halocatena marina"
                     /db_xref="taxon:2934937"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2021-04"
WGS         JALLPK010000001-JALLPK010000007
WGS_SCAFLD  NZ_JALLPK010000001-NZ_JALLPK010000007
//
LOCUS       NZ_RCOR01000000      1769550 bp    DNA     linear   BCT 08-SEP-2024
DEFINITION  Candidatus Korarchaeum cryptofilum strain WS, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RCOR00000000
VERSION     NZ_RCOR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10228449
            Assembly: GCF_003948265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Korarchaeum cryptofilum
  ORGANISM  Candidatus Korarchaeum cryptofilum
            Archaea; Thermoproteota; Candidatus Korarchaeia; Candidatus
            Korarchaeales; Candidatus Korarchaeaceae; Candidatus Korarchaeum.
REFERENCE   1  (bases 1 to 1769550)
  AUTHORS   Mckay,L.J., Dlakic,M., Fields,M.W., Delmont,T.O., Eren,A.M.,
            Jay,Z.J., Klingelsmith,K.B., Rusch,D.B. and Inskeep,W.P.
  TITLE     Co-occurring genomic capacity for anaerobic methane metabolism and
            dissimilatory sulfite reduction discovered in the Korarchaeota
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1769550)
  AUTHORS   Mckay,L.J., Dlakic,M., Fields,M.W., Delmont,T.O., Eren,A.M.,
            Jay,Z.J., Klingelsmith,K.B., Rusch,D.B. and Inskeep,W.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2018) Land Resources & Environmental Sciences,
            Montana State University, 366 Barnard Hall, Bozeman, MT 59717, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RCOR00000000.1.
            The Candidatus Korarchaeum cryptofilum whole genome shotgun (WGS)
            project has the project accession NZ_RCOR00000000.  This version of
            the project (01) has the accession number NZ_RCOR01000000, and
            consists of sequences RCOR01000001-RCOR01000051.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2017
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 114x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003948265.1-RS_2024_09_08
            Annotation Date                   :: 09/08/2024 09:31:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,927
            CDSs (total)                      :: 1,875
            Genes (coding)                    :: 1,859
            CDSs (with protein)               :: 1,859
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 2 of 16
            Pseudo Genes (incomplete)         :: 14 of 16
            Pseudo Genes (internal stop)      :: 0 of 16
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769550
                     /organism="Candidatus Korarchaeum cryptofilum"
                     /mol_type="genomic DNA"
                     /strain="WS"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:498846"
                     /geo_loc_name="USA: Wyoming"
                     /lat_lon="44.76 N 110.44 W"
                     /collection_date="2013-10-01"
WGS         RCOR01000001-RCOR01000051
WGS_SCAFLD  NZ_RCOR01000001-NZ_RCOR01000051
//
LOCUS       NZ_RCOS01000000      2940320 bp    DNA     linear   BCT 08-SEP-2024
DEFINITION  Candidatus Methanodesulfokora washburnensis strain MDKW, whole
            genome shotgun sequencing project.
ACCESSION   NZ_RCOS00000000
VERSION     NZ_RCOS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10094317
            Assembly: GCF_003947435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanodesulfokora washburnensis
  ORGANISM  Candidatus Methanodesulfokora washburnensis
            Archaea; Thermoproteota; Candidatus Korarchaeia; Candidatus
            Korarchaeia incertae sedis; Candidatus Methanodesulfokora.
REFERENCE   1  (bases 1 to 2940320)
  AUTHORS   McKay,L.J., Dlakic,M., Fields,M.W., Delmont,T.O., Eren,A.M.,
            Jay,Z.J., Klingelsmith,K.B., Rusch,D.B. and Inskeep,W.P.
  TITLE     Co-occurring genomic capacity for anaerobic methane and
            dissimilatory sulfur metabolisms discovered in the Korarchaeota
  JOURNAL   Nat Microbiol 4 (4), 614-622 (2019)
   PUBMED   30833730
REFERENCE   2  (bases 1 to 2940320)
  AUTHORS   Mckay,L.J., Dlakic,M., Fields,M.W., Delmont,T.O., Eren,A.M.,
            Jay,Z.J., Klingelsmith,K.B., Rusch,D.B. and Inskeep,W.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2018) Land Resources & Environmental Sciences,
            Montana State University, 366 Barnard Hall, Bozeman, MT 59717, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RCOS00000000.1.
            The Candidatus Methanodesulfokora washburnensis whole genome
            shotgun (WGS) project has the project accession NZ_RCOS00000000.
            This version of the project (01) has the accession number
            NZ_RCOS01000000, and consists of sequences
            RCOS01000001-RCOS01000179.
            
            Original organism designation was Candidatus Korarchaeota archaeon
            MDKW. Organism name recategorized as Candidatus Methanodesulfokores
            #washburnensis (13-MAR-2019).
            
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2017
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 360x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003947435.1-RS_2024_09_08
            Annotation Date                   :: 09/08/2024 09:39:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,351
            CDSs (total)                      :: 3,298
            Genes (coding)                    :: 3,248
            CDSs (with protein)               :: 3,248
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 3 of 50
            Pseudo Genes (incomplete)         :: 48 of 50
            Pseudo Genes (internal stop)      :: 1 of 50
            Pseudo Genes (multiple problems)  :: 2 of 50
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2940320
                     /organism="Candidatus Methanodesulfokora washburnensis"
                     /mol_type="genomic DNA"
                     /strain="MDKW"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2478471"
                     /geo_loc_name="USA: Wyoming"
                     /lat_lon="44.76 N 110.44 W"
                     /collection_date="2013-10-01"
WGS         RCOS01000001-RCOS01000179
WGS_SCAFLD  NZ_RCOS01000001-NZ_RCOS01000179
//
LOCUS       NZ_JBFLGE010000000   2446853 bp    DNA     linear   ENV 08-SEP-2024
DEFINITION  MAG: Methanospirillum sp. isolate SJF001, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBFLGE000000000
VERSION     NZ_JBFLGE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41038316
            Sequence Read Archive: SRR28826811
            Assembly: GCF_041859935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanospirillum sp. (food fermentation metagenome)
  ORGANISM  Methanospirillum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 2446853)
  AUTHORS   Han,D.
  TITLE     12 MAGs form the pit mud of Shujingfang
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2446853)
  AUTHORS   Han,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-APR-2024) Chinese Academy of Sciences, Institute of
            Microbiology, BeiChenXI road, Beijing, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBFLGE000000000.1.
            The Methanospirillum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBFLGE000000000.  This version of the project
            (01) has the accession number NZ_JBFLGE010000000, and consists of
            sequences JBFLGE010000001-JBFLGE010000024.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. v1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 33.814434295807715x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041859935.1-RS_2024_09_08
            Annotation Date                   :: 09/08/2024 14:40:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,452
            CDSs (total)                      :: 2,398
            Genes (coding)                    :: 2,357
            CDSs (with protein)               :: 2,357
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 14 of 41
            Pseudo Genes (incomplete)         :: 29 of 41
            Pseudo Genes (internal stop)      :: 6 of 41
            Pseudo Genes (multiple problems)  :: 7 of 41
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446853
                     /organism="Methanospirillum sp."
                     /mol_type="genomic DNA"
                     /isolate="SJF001"
                     /isolation_source="Baijiu pit mud"
                     /db_xref="taxon:45200"
                     /environmental_sample
                     /geo_loc_name="China"
                     /lat_lon="30.36 N 103.44 E"
                     /collection_date="2023-04-01"
                     /metagenome_source="food fermentation metagenome"
                     /metagenomic
WGS         JBFLGE010000001-JBFLGE010000024
WGS_SCAFLD  NZ_JBFLGE010000001-NZ_JBFLGE010000024
//
LOCUS       NZ_BDMD01000000      1600996 bp    DNA     linear   BCT 09-SEP-2024
DEFINITION  Aeropyrum pernix strain YK1-12-2013, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BDMD00000000
VERSION     NZ_BDMD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00074121
            Assembly: GCF_004323575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeropyrum pernix
  ORGANISM  Aeropyrum pernix
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Aeropyrum.
REFERENCE   1
  AUTHORS   Yumiya,M., Yoshida,T. and Sako,Y.
  TITLE     isolation and characterization of a novel temperate virus Aeropyrum
            globular virus 1 infecting hyperthermophilic archaeon Aeropyrum
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1600996)
  AUTHORS   Sako,Y., Yoshida,T. and Yumiya,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-FEB-2017) Contact:Takashi Yoshida Graduate school of
            Agriculture, Kyoto University; Kitashirakawa Oiwake, Sakyo, Kyoto
            606-8502, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BDMD00000000.1.
            The Aeropyrum pernix whole genome shotgun (WGS) project has the
            project accession NZ_BDMD00000000.  This version of the project
            (01) has the accession number NZ_BDMD01000000, and consists of
            sequences BDMD01000001-BDMD01000144.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.2.10
            Genome Coverage       :: 173x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004323575.1-RS_2024_09_09
            Annotation Date                   :: 09/09/2024 02:23:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,771
            CDSs (total)                      :: 1,714
            Genes (coding)                    :: 1,672
            CDSs (with protein)               :: 1,672
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 5, 4 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 2 of 42
            Pseudo Genes (incomplete)         :: 42 of 42
            Pseudo Genes (internal stop)      :: 1 of 42
            Pseudo Genes (multiple problems)  :: 2 of 42
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600996
                     /organism="Aeropyrum pernix"
                     /mol_type="genomic DNA"
                     /strain="YK1-12-2013"
                     /isolation_source="sediment"
                     /db_xref="taxon:56636"
                     /geo_loc_name="Japan:Kagoshima, Ibusuki, Yamagawa Beach"
                     /lat_lon="31.1058 N 130.3659 E"
                     /collection_date="2012-12-12"
WGS         BDMD01000001-BDMD01000144
WGS_SCAFLD  NZ_BDMD01000001-NZ_BDMD01000144
//
LOCUS       NZ_CABVCD010000000   1905101 bp    DNA     linear   ENV 11-SEP-2024
DEFINITION  MAG: uncultured Methanobacterium sp. isolate MGYG-HGUT-04585, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CABVCD000000000
VERSION     NZ_CABVCD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5854092
            Sequence Read Archive: ERR479173, ERR479174, ERR480669, ERR480670
            Assembly: GCF_902496735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      uncultured Methanobacterium sp. (human gut metagenome)
  ORGANISM  uncultured Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium; environmental samples.
REFERENCE   1  (bases 1 to 1905101)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABVCD000000000.1.
            The uncultured Methanobacterium sp. whole genome shotgun (WGS)
            project has the project accession NZ_CABVCD000000000.  This version
            of the project (01) has the accession number NZ_CABVCD010000000,
            and consists of sequences CABVCD010000001-CABVCD010000037.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902496735.1-RS_2024_09_11
            Annotation Date                   :: 09/11/2024 07:03:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,960
            CDSs (total)                      :: 1,915
            Genes (coding)                    :: 1,895
            CDSs (with protein)               :: 1,895
            Genes (RNA)                       :: 45
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 5 of 20
            Pseudo Genes (incomplete)         :: 17 of 20
            Pseudo Genes (internal stop)      :: 1 of 20
            Pseudo Genes (multiple problems)  :: 3 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905101
                     /organism="uncultured Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-04585"
                     /isolation_source="human gut"
                     /db_xref="taxon:176306"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CABVCD010000001-CABVCD010000037
WGS_SCAFLD  NZ_CABVCD010000001-NZ_CABVCD010000037
//
LOCUS       NZ_JACDUJ010000000   1714694 bp    DNA     linear   BCT 12-SEP-2024
DEFINITION  Methanococcus maripaludis strain A5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUJ000000000
VERSION     NZ_JACDUJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908254
            Assembly: GCF_013761105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1714694)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1714694)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUJ000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUJ000000000.  This version of the
            project (01) has the accession number NZ_JACDUJ010000000, and
            consists of sequences JACDUJ010000001-JACDUJ010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 874.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013761105.1-RS_2024_09_12
            Annotation Date                   :: 09/12/2024 01:47:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,863
            CDSs (total)                      :: 1,819
            Genes (coding)                    :: 1,808
            CDSs (with protein)               :: 1,808
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 3 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 0 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714694
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="A5"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: Florida, Tampa Bay"
WGS         JACDUJ010000001-JACDUJ010000003
WGS_SCAFLD  NZ_JACDUJ010000001-NZ_JACDUJ010000003
//
LOCUS       NZ_JACDUO010000000   1840346 bp    DNA     linear   BCT 12-SEP-2024
DEFINITION  Methanococcus maripaludis strain C13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUO000000000
VERSION     NZ_JACDUO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908282
            Assembly: GCF_013761225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1840346)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1840346)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUO000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUO000000000.  This version of the
            project (01) has the accession number NZ_JACDUO010000000, and
            consists of sequences JACDUO010000001-JACDUO010000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 815.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013761225.1-RS_2024_09_12
            Annotation Date                   :: 09/12/2024 01:47:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,984
            CDSs (total)                      :: 1,941
            Genes (coding)                    :: 1,926
            CDSs (with protein)               :: 1,926
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 4 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 0 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840346
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="C13"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JACDUO010000001-JACDUO010000006
WGS_SCAFLD  NZ_JACDUO010000001-NZ_JACDUO010000006
//
LOCUS       NZ_JACDUH010000000   2015530 bp    DNA     linear   BCT 12-SEP-2024
DEFINITION  Methanococcus maripaludis strain A1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUH000000000
VERSION     NZ_JACDUH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908266
            Assembly: GCF_013761045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 2015530)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2015530)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUH000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUH000000000.  This version of the
            project (01) has the accession number NZ_JACDUH010000000, and
            consists of sequences JACDUH010000001-JACDUH010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 744.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013761045.1-RS_2024_09_12
            Annotation Date                   :: 09/12/2024 01:46:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,217
            CDSs (total)                      :: 2,171
            Genes (coding)                    :: 2,162
            CDSs (with protein)               :: 2,162
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 7 of 9
            Pseudo Genes (internal stop)      :: 2 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015530
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="A1"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: Florida, Tampa Bay"
WGS         JACDUH010000001-JACDUH010000007
WGS_SCAFLD  NZ_JACDUH010000001-NZ_JACDUH010000007
//
LOCUS       NZ_JBHDYC010000000   4743761 bp    DNA     linear   BCT 12-SEP-2024
DEFINITION  Natrinema sp. H-ect4, whole genome shotgun sequencing project.
ACCESSION   NZ_JBHDYC000000000
VERSION     NZ_JBHDYC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43145792
            Assembly: GCF_041894845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema sp. H-ect4
  ORGANISM  Natrinema sp. H-ect4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4743761)
  AUTHORS   Sorokin,D.Y., Merkel,A.Y., Messina,E. and Yakimov,M.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4743761)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-SEP-2024) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHDYC000000000.1.
            The Natrinema sp. H-ect4 whole genome shotgun (WGS) project has the
            project accession NZ_JBHDYC000000000.  This version of the project
            (01) has the accession number NZ_JBHDYC010000000, and consists of
            sequences JBHDYC010000001-JBHDYC010000057.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 350x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041894845.1-RS_2024_09_11
            Annotation Date                   :: 09/11/2024 13:13:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,756
            CDSs (total)                      :: 4,691
            Genes (coding)                    :: 4,542
            CDSs (with protein)               :: 4,542
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 56 of 149
            Pseudo Genes (incomplete)         :: 107 of 149
            Pseudo Genes (internal stop)      :: 33 of 149
            Pseudo Genes (multiple problems)  :: 40 of 149
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4743761
                     /organism="Natrinema sp. H-ect4"
                     /mol_type="genomic DNA"
                     /strain="H-ect4"
                     /isolation_source="Mixed surface oxic sediment and brine
                     sample from hypersaline salt lakes"
                     /db_xref="taxon:3242699"
                     /geo_loc_name="Russia: Altai Region, Kulunda Steppe"
                     /collection_date="2022-07"
WGS         JBHDYC010000001-JBHDYC010000057
WGS_SCAFLD  NZ_JBHDYC010000001-NZ_JBHDYC010000057
//
LOCUS       NZ_JAOTQN010000000   2302499 bp    DNA     linear   BCT 12-SEP-2024
DEFINITION  Pyrobaculum sp. 3827-6, whole genome shotgun sequencing project.
ACCESSION   NZ_JAOTQN000000000
VERSION     NZ_JAOTQN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31139133
            Assembly: GCF_025641885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrobaculum sp. 3827-6
  ORGANISM  Pyrobaculum sp. 3827-6
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2302499)
  AUTHORS   Frolov,E.N., Elcheninov,A.G. and Kublanov,I.V.
  TITLE     Draft Genome Sequence of a autotrophic hyperthermophilic archaeon,
            Pyrobaculum sp. strain 3827-6, isolated from a Kamchatka Hot Spring
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2302499)
  AUTHORS   Elcheninov,A.G. and Frolov,E.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2022) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOTQN000000000.1.
            The Pyrobaculum sp. 3827-6 whole genome shotgun (WGS) project has
            the project accession NZ_JAOTQN000000000.  This version of the
            project (01) has the accession number NZ_JAOTQN010000000, and
            consists of sequences JAOTQN010000001-JAOTQN010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2022
            Assembly Method        :: SPAdes v. 3.15.4; Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1100.0x
            Sequencing Technology  :: Illumina NovaSeq 6000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025641885.1-RS_2024_09_12
            Annotation Date                   :: 09/12/2024 06:40:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,705
            CDSs (total)                      :: 2,655
            Genes (coding)                    :: 2,615
            CDSs (with protein)               :: 2,615
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 11 of 40
            Pseudo Genes (incomplete)         :: 26 of 40
            Pseudo Genes (internal stop)      :: 7 of 40
            Pseudo Genes (multiple problems)  :: 4 of 40
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302499
                     /organism="Pyrobaculum sp. 3827-6"
                     /mol_type="genomic DNA"
                     /strain="3827-6"
                     /isolation_source="geothermally heated soil"
                     /db_xref="taxon:2983604"
                     /geo_loc_name="Russia: Uzon Caldera, Kamchatka"
                     /lat_lon="54.500383 N 160.001467 E"
                     /collection_date="2019-09"
WGS         JAOTQN010000001-JAOTQN010000013
WGS_SCAFLD  NZ_JAOTQN010000001-NZ_JAOTQN010000013
//
LOCUS       NZ_NMUE01000000      2545538 bp    DNA     linear   BCT 13-SEP-2024
DEFINITION  Pyrobaculum aerophilum strain YKB31, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NMUE00000000
VERSION     NZ_NMUE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07344349
            Assembly: GCF_003400025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrobaculum aerophilum
  ORGANISM  Pyrobaculum aerophilum
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2545538)
  AUTHORS   Mochizuki,T., Berliner,A.J., Yoshida-Takashima,Y., Takaki,Y.,
            Nunoura,T. and Takai,K.
  TITLE     Draft genome sequence of aerobic hyperthermophilic archaea,
            Pyrobaculum aerophilum YKB31 and YKB32
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2545538)
  AUTHORS   Mochizuki,T., Berliner,A.J., Yoshida-Takashima,Y., Takaki,Y.,
            Nunoura,T. and Takai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2017) Department of Bioengineering, UC Berkeley,
            2151 Berkeley Way, Berkeley, CA 94704, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NMUE00000000.1.
            The Pyrobaculum aerophilum whole genome shotgun (WGS) project has
            the project accession NZ_NMUE00000000.  This version of the project
            (01) has the accession number NZ_NMUE01000000, and consists of
            sequences NMUE01000001-NMUE01000111.
            Bacteria and source DNA available from Tomohiro Mochizuki.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 06-JUL-2017
            Assembly Method        :: SPAdes v. 2017-07-06
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 43.75x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003400025.1-RS_2024_09_13
            Annotation Date                   :: 09/13/2024 02:07:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,185
            CDSs (total)                      :: 3,136
            Genes (coding)                    :: 2,828
            CDSs (with protein)               :: 2,828
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 308
            CDSs (without protein)            :: 308
            Pseudo Genes (ambiguous residues) :: 0 of 308
            Pseudo Genes (frameshifted)       :: 216 of 308
            Pseudo Genes (incomplete)         :: 109 of 308
            Pseudo Genes (internal stop)      :: 14 of 308
            Pseudo Genes (multiple problems)  :: 30 of 308
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545538
                     /organism="Pyrobaculum aerophilum"
                     /mol_type="genomic DNA"
                     /strain="YKB31"
                     /isolation_source="hot spring"
                     /db_xref="taxon:13773"
                     /geo_loc_name="Japan: Shizuoka"
                     /collection_date="2015"
                     /collected_by="Tomohiro Mochizuki"
                     /identified_by="Tomohiro Mochizuki"
WGS         NMUE01000001-NMUE01000111
WGS_SCAFLD  NZ_NMUE01000001-NZ_NMUE01000111
//
LOCUS       NZ_JAVDQI010000000   2456909 bp    DNA     linear   BCT 15-SEP-2024
DEFINITION  Methanococcoides alaskense strain DSM 17273, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAVDQI000000000
VERSION     NZ_JAVDQI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18250245
            Assembly: GCF_031454185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides alaskense
  ORGANISM  Methanococcoides alaskense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1  (bases 1 to 2456909)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2456909)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2023) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVDQI000000000.1.
            The Methanococcoides alaskense whole genome shotgun (WGS) project
            has the project accession NZ_JAVDQI000000000.  This version of the
            project (01) has the accession number NZ_JAVDQI010000000, and
            consists of sequences JAVDQI010000001-JAVDQI010000024.
            pi_orcid: https://orcid.org/0000-0002-5144-6200.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 55.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031454185.1-RS_2024_09_15
            Annotation Date                   :: 09/15/2024 09:43:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,450
            CDSs (total)                      :: 2,396
            Genes (coding)                    :: 2,360
            CDSs (with protein)               :: 2,360
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 8 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 15 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456909
                     /organism="Methanococcoides alaskense"
                     /mol_type="genomic DNA"
                     /strain="DSM 17273"
                     /culture_collection="DSM:17273"
                     /type_material="type strain of Methanococcoides alaskense"
                     /db_xref="taxon:325778"
                     /geo_loc_name="USA"
WGS         JAVDQI010000001-JAVDQI010000024
WGS_SCAFLD  NZ_JAVDQI010000001-NZ_JAVDQI010000024
//
LOCUS       NZ_JANUCQ010000000   1780593 bp    DNA     linear   BCT 16-SEP-2024
DEFINITION  Methanococcus voltae PS, whole genome shotgun sequencing project.
ACCESSION   NZ_JANUCQ000000000
VERSION     NZ_JANUCQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28058271
            Assembly: GCF_024807035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus voltae PS
  ORGANISM  Methanococcus voltae PS
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1780593)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1780593)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUCQ000000000.1.
            The Methanococcus voltae PS whole genome shotgun (WGS) project has
            the project accession NZ_JANUCQ000000000.  This version of the
            project (01) has the accession number NZ_JANUCQ010000000, and
            consists of sequences JANUCQ010000001-JANUCQ010000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 614.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024807035.1-RS_2024_09_16
            Annotation Date                   :: 09/16/2024 08:21:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,647
            CDSs (total)                      :: 1,603
            Genes (coding)                    :: 1,598
            CDSs (with protein)               :: 1,598
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 3 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780593
                     /organism="Methanococcus voltae PS"
                     /mol_type="genomic DNA"
                     /strain="PS"
                     /type_material="type strain of Methanococcus voltae"
                     /db_xref="taxon:523842"
WGS         JANUCQ010000001-JANUCQ010000012
WGS_SCAFLD  NZ_JANUCQ010000001-NZ_JANUCQ010000012
//
LOCUS       NZ_JANUCS010000000   2030718 bp    DNA     linear   BCT 16-SEP-2024
DEFINITION  Methanosalsum natronophilum strain AME2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANUCS000000000
VERSION     NZ_JANUCS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18243005
            Assembly: GCF_024808815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosalsum natronophilum
  ORGANISM  Methanosalsum natronophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosalsum.
REFERENCE   1  (bases 1 to 2030718)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the
            genomes of soil and plant-associated and newly described type
            strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2030718)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUCS000000000.1.
            The Methanosalsum natronophilum whole genome shotgun (WGS) project
            has the project accession NZ_JANUCS000000000.  This version of the
            project (01) has the accession number NZ_JANUCS010000000, and
            consists of sequences JANUCS010000001-JANUCS010000046.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 711.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024808815.1-RS_2024_09_16
            Annotation Date                   :: 09/16/2024 07:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,048
            CDSs (total)                      :: 1,997
            Genes (coding)                    :: 1,968
            CDSs (with protein)               :: 1,968
            Genes (RNA)                       :: 51
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 4 of 29
            Pseudo Genes (incomplete)         :: 21 of 29
            Pseudo Genes (internal stop)      :: 8 of 29
            Pseudo Genes (multiple problems)  :: 4 of 29
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030718
                     /organism="Methanosalsum natronophilum"
                     /mol_type="genomic DNA"
                     /strain="AME2"
                     /type_material="type strain of Methanosalsum
                     natronophilum"
                     /db_xref="taxon:768733"
WGS         JANUCS010000001-JANUCS010000046
WGS_SCAFLD  NZ_JANUCS010000001-NZ_JANUCS010000046
//
LOCUS       NZ_JAXOFW010000000   1712416 bp    DNA     linear   BCT 17-SEP-2024
DEFINITION  Methanothermobacter marburgensis strain Clermont, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXOFW000000000
VERSION     NZ_JAXOFW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38390029
            Assembly: GCF_041928885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanothermobacter marburgensis
  ORGANISM  Methanothermobacter marburgensis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1712416)
  AUTHORS   Biderre-Petit,C., Mbarki,M., Courtine,D., Benarab,Y., Vial,C.,
            Fontanille,P., Dubessay,P., Keramati,M., Jouan-Dufournel,I.,
            Monjot,A., Guez,J.S. and Fadhlaoui,K.
  TITLE     Comparison of methane yield of a novel strain of
            Methanothermobacter marburgensis in pure and mixed adapted culture
            derived from a methanation bubble column bioreactor
  JOURNAL   Bioresour Technol 406, 131021 (2024)
   PUBMED   38909868
REFERENCE   2  (bases 1 to 1712416)
  AUTHORS   Guez,J.-S., Vial,C., Fontanille,P., Dubessay,P., Fadhlaoui,K.,
            Petit,C. and Courtine,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2023) Laboratoire de Microbiologie: Genome et
            Environnement, Laboratoire de Microbiologie: Genome et
            Environnement; Universite Clermont Auvergne, 1 Impasse Amelie
            Murat, Aubiere, Auvergne 63178, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXOFW000000000.1.
            The Methanothermobacter marburgensis whole genome shotgun (WGS)
            project has the project accession NZ_JAXOFW000000000.  This version
            of the project (01) has the accession number NZ_JAXOFW010000000,
            and consists of sequences JAXOFW010000001-JAXOFW010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSM 34405.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041928885.1-RS_2024_09_16
            Annotation Date                   :: 09/16/2024 12:04:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,852
            CDSs (total)                      :: 1,812
            Genes (coding)                    :: 1,803
            CDSs (with protein)               :: 1,803
            Genes (RNA)                       :: 40
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 2 of 9
            Pseudo Genes (incomplete)         :: 6 of 9
            Pseudo Genes (internal stop)      :: 1 of 9
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712416
                     /organism="Methanothermobacter marburgensis"
                     /mol_type="genomic DNA"
                     /strain="Clermont"
                     /isolation_source="anaerobic bioreactor [ENVO_00002124]"
                     /culture_collection="DSM:34405"
                     /db_xref="taxon:145263"
WGS         JAXOFW010000001-JAXOFW010000006
WGS_SCAFLD  NZ_JAXOFW010000001-NZ_JAXOFW010000006
//
LOCUS       NZ_JANHDP010000000   4032564 bp    DNA     linear   BCT 19-SEP-2024
DEFINITION  Natronoarchaeum rubrum strain GX48, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHDP000000000
VERSION     NZ_JANHDP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29911666
            Assembly: GCF_024494695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronoarchaeum rubrum
  ORGANISM  Natronoarchaeum rubrum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae.
REFERENCE   1  (bases 1 to 4032564)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4032564)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDP000000000.1.
            The Natronoarchaeum rubrum whole genome shotgun (WGS) project has
            the project accession NZ_JANHDP000000000.  This version of the
            project (01) has the accession number NZ_JANHDP010000000, and
            consists of sequences JANHDP010000001-JANHDP010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 132.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024494695.1-RS_2024_09_19
            Annotation Date                   :: 09/19/2024 07:16:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,112
            CDSs (total)                      :: 4,048
            Genes (coding)                    :: 4,004
            CDSs (with protein)               :: 4,004
            Genes (RNA)                       :: 64
            rRNAs                             :: 4, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 15 of 44
            Pseudo Genes (incomplete)         :: 34 of 44
            Pseudo Genes (internal stop)      :: 6 of 44
            Pseudo Genes (multiple problems)  :: 11 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4032564
                     /organism="Natronoarchaeum rubrum"
                     /mol_type="genomic DNA"
                     /strain="GX48"
                     /isolation_source="marine solar saltern"
                     /type_material="type strain of Natronoarchaeum rubrum"
                     /db_xref="taxon:755311"
                     /geo_loc_name="China: Shandong, Gangxi"
                     /collection_date="2009-02"
WGS         JANHDP010000001-JANHDP010000015
WGS_SCAFLD  NZ_JANHDP010000001-NZ_JANHDP010000015
//
LOCUS       NZ_JBEDNX010000000   3891088 bp    DNA     linear   BCT 22-SEP-2024
DEFINITION  Halorubrum miltondacostae strain RMP-47, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEDNX000000000
VERSION     NZ_JBEDNX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41557448
            Assembly: GCF_041379825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum miltondacostae
  ORGANISM  Halorubrum miltondacostae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3891088)
  AUTHORS   Albuquerque,L., Viver,T., Barroso,C., Claudino,R., Galvan,M.,
            Simoes,G., Lobo Da Cunha,A. and Egas,C.
  TITLE     Halorubrum miltondacostae sp. nov., a potential PHA producer
            isolated from an inland solar saltern in Rio Maior, Portugal
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3891088)
  AUTHORS   Albuquerque,L., Barroso,C. and Egas,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2024) BIOCANT, BIOCANT, Parque Tecnologico de
            Cantanhede, Nucleo 04, Lote 2, Cantanhede 3060-197, Portugal
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEDNX000000000.1.
            The Halorubrum miltondacostae whole genome shotgun (WGS) project
            has the project accession NZ_JBEDNX000000000.  This version of the
            project (01) has the accession number NZ_JBEDNX010000000, and
            consists of sequences JBEDNX010000001-JBEDNX010000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 43x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041379825.1-RS_2024_09_22
            Annotation Date                   :: 09/22/2024 08:20:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,922
            CDSs (total)                      :: 3,858
            Genes (coding)                    :: 3,737
            CDSs (with protein)               :: 3,737
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 5, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 5, 7 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 36 of 121
            Pseudo Genes (incomplete)         :: 87 of 121
            Pseudo Genes (internal stop)      :: 35 of 121
            Pseudo Genes (multiple problems)  :: 31 of 121
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3891088
                     /organism="Halorubrum miltondacostae"
                     /mol_type="genomic DNA"
                     /strain="RMP-47"
                     /isolation_source="saline water [ENVO_00002010]"
                     /db_xref="taxon:3076378"
                     /geo_loc_name="Portugal: Rio Maior"
                     /lat_lon="39.3542 N 8.8958 W"
                     /collection_date="2019-07"
WGS         JBEDNX010000001-JBEDNX010000068
WGS_SCAFLD  NZ_JBEDNX010000001-NZ_JBEDNX010000068
//
LOCUS       NZ_JBEDNY010000000   3529597 bp    DNA     linear   BCT 22-SEP-2024
DEFINITION  Halorubrum miltondacostae strain RMP-11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEDNY000000000
VERSION     NZ_JBEDNY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41557447
            Assembly: GCF_041379815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum miltondacostae
  ORGANISM  Halorubrum miltondacostae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3529597)
  AUTHORS   Albuquerque,L., Viver,T., Barroso,C., Claudino,R., Galvan,M.,
            Simoes,G., Lobo Da Cunha,A. and Egas,C.
  TITLE     Halorubrum miltondacostae sp. nov., a potential PHA producer
            isolated from an inland solar saltern in Rio Maior, Portugal
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3529597)
  AUTHORS   Albuquerque,L., Barroso,C. and Egas,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2024) BIOCANT, BIOCANT, Parque Tecnologico de
            Cantanhede, Nucleo 04, Lote 2, Cantanhede 3060-197, Portugal
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEDNY000000000.1.
            The Halorubrum miltondacostae whole genome shotgun (WGS) project
            has the project accession NZ_JBEDNY000000000.  This version of the
            project (01) has the accession number NZ_JBEDNY010000000, and
            consists of sequences JBEDNY010000001-JBEDNY010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041379815.1-RS_2024_09_22
            Annotation Date                   :: 09/22/2024 09:28:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,604
            CDSs (total)                      :: 3,540
            Genes (coding)                    :: 3,438
            CDSs (with protein)               :: 3,438
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 5, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 5, 7 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 31 of 102
            Pseudo Genes (incomplete)         :: 77 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 27 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3529597
                     /organism="Halorubrum miltondacostae"
                     /mol_type="genomic DNA"
                     /strain="RMP-11"
                     /isolation_source="saline water [ENVO_00002010]"
                     /type_material="type strain of Halorubrum miltondacostae"
                     /db_xref="taxon:3076378"
                     /geo_loc_name="Portugal: Rio Maior"
                     /lat_lon="39.3542 N 8.8958 W"
                     /collection_date="2019-07"
WGS         JBEDNY010000001-JBEDNY010000024
WGS_SCAFLD  NZ_JBEDNY010000001-NZ_JBEDNY010000024
//
LOCUS       NZ_JACHFY010000000   2722575 bp    DNA     linear   BCT 26-SEP-2024
DEFINITION  Sulfurisphaera ohwakuensis strain DSM 12421, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHFY000000000
VERSION     NZ_JACHFY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908530
            Assembly: GCF_014202105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfurisphaera ohwakuensis
  ORGANISM  Sulfurisphaera ohwakuensis
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfurisphaera.
REFERENCE   1  (bases 1 to 2722575)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2722575)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHFY000000000.1.
            The Sulfurisphaera ohwakuensis whole genome shotgun (WGS) project
            has the project accession NZ_JACHFY000000000.  This version of the
            project (01) has the accession number NZ_JACHFY010000000, and
            consists of sequences JACHFY010000001-JACHFY010000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 334.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014202105.1-RS_2024_09_26
            Annotation Date                   :: 09/26/2024 08:22:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,013
            CDSs (total)                      :: 2,962
            Genes (coding)                    :: 2,845
            CDSs (with protein)               :: 2,845
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 55 of 117
            Pseudo Genes (incomplete)         :: 84 of 117
            Pseudo Genes (internal stop)      :: 10 of 117
            Pseudo Genes (multiple problems)  :: 29 of 117
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722575
                     /organism="Sulfurisphaera ohwakuensis"
                     /mol_type="genomic DNA"
                     /strain="DSM 12421"
                     /culture_collection="DSM:12421"
                     /type_material="type strain of Sulfurisphaera ohwakuensis"
                     /db_xref="taxon:69656"
WGS         JACHFY010000001-JACHFY010000071
WGS_SCAFLD  NZ_JACHFY010000001-NZ_JACHFY010000071
//
LOCUS       NZ_JACHIQ010000000   1768263 bp    DNA     linear   BCT 26-SEP-2024
DEFINITION  Methanococcus maripaludis strain DSM 7078, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHIQ000000000
VERSION     NZ_JACHIQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908265
            Assembly: GCF_014203295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1768263)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1768263)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHIQ000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACHIQ000000000.  This version of the
            project (01) has the accession number NZ_JACHIQ010000000, and
            consists of sequences JACHIQ010000001-JACHIQ010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 848.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014203295.1-RS_2024_09_26
            Annotation Date                   :: 09/26/2024 08:37:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,913
            CDSs (total)                      :: 1,870
            Genes (coding)                    :: 1,859
            CDSs (with protein)               :: 1,859
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 9 of 11
            Pseudo Genes (internal stop)      :: 0 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768263
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="DSM 7078"
                     /culture_collection="DSM:7078"
                     /db_xref="taxon:39152"
WGS         JACHIQ010000001-JACHIQ010000005
WGS_SCAFLD  NZ_JACHIQ010000001-NZ_JACHIQ010000005
//
LOCUS       NZ_JACHED010000000   1773056 bp    DNA     linear   BCT 27-SEP-2024
DEFINITION  Methanococcus maripaludis strain D1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHED000000000
VERSION     NZ_JACHED000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908267
            Assembly: GCF_014207315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1773056)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1773056)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHED000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACHED000000000.  This version of the
            project (01) has the accession number NZ_JACHED010000000, and
            consists of sequences JACHED010000001-JACHED010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 845.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014207315.1-RS_2024_09_27
            Annotation Date                   :: 09/27/2024 04:09:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,927
            CDSs (total)                      :: 1,884
            Genes (coding)                    :: 1,866
            CDSs (with protein)               :: 1,866
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 3 of 18
            Pseudo Genes (incomplete)         :: 13 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773056
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="D1"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JACHED010000001-JACHED010000014
WGS_SCAFLD  NZ_JACHED010000001-NZ_JACHED010000014
//
LOCUS       NZ_JBHSDJ010000000   4509995 bp    DNA     linear   BCT 10-OCT-2024
DEFINITION  Natribaculum luteum strain IBRC-M 10912, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSDJ000000000
VERSION     NZ_JBHSDJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43281919
            Assembly: GCF_042651585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natribaculum luteum
  ORGANISM  Natribaculum luteum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natribaculum.
REFERENCE   1  (bases 1 to 4509995)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4509995)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSDJ000000000.1.
            The Natribaculum luteum whole genome shotgun (WGS) project has the
            project accession NZ_JBHSDJ000000000.  This version of the project
            (01) has the accession number NZ_JBHSDJ010000000, and consists of
            sequences JBHSDJ010000001-JBHSDJ010000133.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042651585.1-RS_2024_10_06
            Annotation Date                   :: 10/06/2024 13:24:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,598
            CDSs (total)                      :: 4,536
            Genes (coding)                    :: 4,338
            CDSs (with protein)               :: 4,338
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 198
            CDSs (without protein)            :: 198
            Pseudo Genes (ambiguous residues) :: 0 of 198
            Pseudo Genes (frameshifted)       :: 58 of 198
            Pseudo Genes (incomplete)         :: 164 of 198
            Pseudo Genes (internal stop)      :: 32 of 198
            Pseudo Genes (multiple problems)  :: 45 of 198
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4509995
                     /organism="Natribaculum luteum"
                     /mol_type="genomic DNA"
                     /strain="IBRC-M 10912"
                     /type_material="type strain of Halovarius luteus"
                     /db_xref="taxon:1586232"
                     /collection_date="2020"
WGS         JBHSDJ010000001-JBHSDJ010000133
WGS_SCAFLD  NZ_JBHSDJ010000001-NZ_JBHSDJ010000133
//
LOCUS       NZ_JBHSAQ010000000   3897956 bp    DNA     linear   BCT 11-OCT-2024
DEFINITION  Halovivax cerinus strain IBRC-M 10256, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSAQ000000000
VERSION     NZ_JBHSAQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43281996
            Assembly: GCF_042650185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovivax cerinus
  ORGANISM  Halovivax cerinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halovivax.
REFERENCE   1  (bases 1 to 3897956)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3897956)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSAQ000000000.1.
            The Halovivax cerinus whole genome shotgun (WGS) project has the
            project accession NZ_JBHSAQ000000000.  This version of the project
            (01) has the accession number NZ_JBHSAQ010000000, and consists of
            sequences JBHSAQ010000001-JBHSAQ010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 130x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042650185.1-RS_2024_10_06
            Annotation Date                   :: 10/06/2024 13:15:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,719
            CDSs (total)                      :: 3,670
            Genes (coding)                    :: 3,609
            CDSs (with protein)               :: 3,609
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 17 of 61
            Pseudo Genes (incomplete)         :: 47 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 7 of 61
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3897956
                     /organism="Halovivax cerinus"
                     /mol_type="genomic DNA"
                     /strain="IBRC-M 10256"
                     /type_material="type strain of Halovivax cerinus"
                     /db_xref="taxon:1487865"
                     /collection_date="2022"
WGS         JBHSAQ010000001-JBHSAQ010000020
WGS_SCAFLD  NZ_JBHSAQ010000001-NZ_JBHSAQ010000020
//
LOCUS       NZ_ALJD01000000      4492306 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Halogranum salarium B-1, whole genome shotgun sequencing project.
ACCESSION   NZ_ALJD00000000
VERSION     NZ_ALJD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470186
            Assembly: GCF_000283335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogranum salarium B-1
  ORGANISM  Halogranum salarium B-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 4492306)
  AUTHORS   Kim,K.K., Lee,K.C. and Lee,J.S.
  TITLE     Draft genome sequence of the extremely halophilic archaeon
            Halogranum salarium B-1T
  JOURNAL   J Bacteriol 194 (23), 6659 (2012)
   PUBMED   23144405
REFERENCE   2  (bases 1 to 4492306)
  AUTHORS   Kim,K.K., Lee,K.C. and Lee,J.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2012) Korean Collection for Type Cultures,
            Biological Resource Center, Korea Research Institute of Bioscience
            and Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806,
            South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ALJD00000000.1.
            The Halogranum salarium B-1 whole genome shotgun (WGS) project has
            the project accession NZ_ALJD00000000.  This version of the project
            (01) has the accession number NZ_ALJD01000000, and consists of
            sequences ALJD01000001-ALJD01000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench; gsAssembler v.
                                     5.0; 2.6
            Assembly Name         :: 162.HSB1.1
            Genome Coverage       :: 321.99x
            Sequencing Technology :: Illumina GAIIx; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000283335.1-RS_2024_10_11
            Annotation Date                   :: 10/11/2024 03:02:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,562
            CDSs (total)                      :: 4,490
            Genes (coding)                    :: 4,434
            CDSs (with protein)               :: 4,434
            Genes (RNA)                       :: 72
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 22 of 56
            Pseudo Genes (incomplete)         :: 42 of 56
            Pseudo Genes (internal stop)      :: 10 of 56
            Pseudo Genes (multiple problems)  :: 15 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4492306
                     /organism="Halogranum salarium B-1"
                     /mol_type="genomic DNA"
                     /strain="B-1"
                     /isolation_source="evaporitic salt crystal"
                     /culture_collection="KCTC:4066"
                     /type_material="type strain of Halogranum salarium"
                     /db_xref="taxon:1210908"
                     /geo_loc_name="South Korea"
                     /collection_date="2009-03"
WGS         ALJD01000001-ALJD01000017
WGS_SCAFLD  NZ_ALJD01000001-NZ_ALJD01000017
//
LOCUS       NZ_JBHMAK010000000   4168231 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Haloarcula sebkhae strain JCM 19018, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHMAK000000000
VERSION     NZ_JBHMAK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43281742
            Assembly: GCF_042429525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sebkhae
  ORGANISM  Haloarcula sebkhae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4168231)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHMAK000000000.1.
            The Haloarcula sebkhae whole genome shotgun (WGS) project has the
            project accession NZ_JBHMAK000000000.  This version of the project
            (01) has the accession number NZ_JBHMAK010000000, and consists of
            sequences JBHMAK010000001-JBHMAK010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042429525.1-RS_2024_09_29
            Annotation Date                   :: 09/29/2024 12:11:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,277
            CDSs (total)                      :: 4,218
            Genes (coding)                    :: 4,125
            CDSs (with protein)               :: 4,125
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4, 4 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 46 of 93
            Pseudo Genes (incomplete)         :: 64 of 93
            Pseudo Genes (internal stop)      :: 31 of 93
            Pseudo Genes (multiple problems)  :: 37 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4168231
                     /organism="Haloarcula sebkhae"
                     /mol_type="genomic DNA"
                     /strain="JCM 19018"
                     /type_material="type strain of Haloarcula sebkhae"
                     /db_xref="taxon:932660"
                     /collection_date="2021"
WGS         JBHMAK010000001-JBHMAK010000020
WGS_SCAFLD  NZ_JBHMAK010000001-NZ_JBHMAK010000020
//
LOCUS       NZ_JBHMAJ010000000   3711963 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Halobaculum roseum strain JCM 31273, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHMAJ000000000
VERSION     NZ_JBHMAJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43281741
            Assembly: GCF_042429545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum roseum
  ORGANISM  Halobaculum roseum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 3711963)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHMAJ000000000.1.
            The Halobaculum roseum whole genome shotgun (WGS) project has the
            project accession NZ_JBHMAJ000000000.  This version of the project
            (01) has the accession number NZ_JBHMAJ010000000, and consists of
            sequences JBHMAJ010000001-JBHMAJ010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042429545.1-RS_2024_09_29
            Annotation Date                   :: 09/29/2024 12:07:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,785
            CDSs (total)                      :: 3,719
            Genes (coding)                    :: 3,670
            CDSs (with protein)               :: 3,670
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 4, 4 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 16 of 49
            Pseudo Genes (incomplete)         :: 39 of 49
            Pseudo Genes (internal stop)      :: 7 of 49
            Pseudo Genes (multiple problems)  :: 12 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3711963
                     /organism="Halobaculum roseum"
                     /mol_type="genomic DNA"
                     /strain="JCM 31273"
                     /type_material="type strain of Halobaculum roseum"
                     /db_xref="taxon:2175149"
                     /collection_date="2020"
WGS         JBHMAJ010000001-JBHMAJ010000020
WGS_SCAFLD  NZ_JBHMAJ010000001-NZ_JBHMAJ010000020
//
LOCUS       NZ_JBHMAI010000000   6133468 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Haladaptatus pallidirubidus strain JCM 17504, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHMAI000000000
VERSION     NZ_JBHMAI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43281739
            Assembly: GCF_042429455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus pallidirubidus
  ORGANISM  Haladaptatus pallidirubidus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 6133468)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHMAI000000000.1.
            The Haladaptatus pallidirubidus whole genome shotgun (WGS) project
            has the project accession NZ_JBHMAI000000000.  This version of the
            project (01) has the accession number NZ_JBHMAI010000000, and
            consists of sequences JBHMAI010000001-JBHMAI010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 463.26x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042429455.1-RS_2024_09_29
            Annotation Date                   :: 09/29/2024 12:14:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,785
            CDSs (total)                      :: 6,720
            Genes (coding)                    :: 5,768
            CDSs (with protein)               :: 5,768
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 952
            CDSs (without protein)            :: 952
            Pseudo Genes (ambiguous residues) :: 0 of 952
            Pseudo Genes (frameshifted)       :: 753 of 952
            Pseudo Genes (incomplete)         :: 249 of 952
            Pseudo Genes (internal stop)      :: 57 of 952
            Pseudo Genes (multiple problems)  :: 96 of 952
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6133468
                     /organism="Haladaptatus pallidirubidus"
                     /mol_type="genomic DNA"
                     /strain="JCM 17504"
                     /type_material="type strain of Haladaptatus
                     pallidirubidus"
                     /db_xref="taxon:1008152"
                     /collection_date="2022"
WGS         JBHMAI010000001-JBHMAI010000008
WGS_SCAFLD  NZ_JBHMAI010000001-NZ_JBHMAI010000008
//
LOCUS       NZ_JBHRWN010000000   2708740 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Halobacterium litoreum strain CGMCC 1.12562, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHRWN000000000
VERSION     NZ_JBHRWN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282153
            Assembly: GCF_042647965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium litoreum
  ORGANISM  Halobacterium litoreum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2708740)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2708740)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHRWN000000000.1.
            The Halobacterium litoreum whole genome shotgun (WGS) project has
            the project accession NZ_JBHRWN000000000.  This version of the
            project (01) has the accession number NZ_JBHRWN010000000, and
            consists of sequences JBHRWN010000001-JBHRWN010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 405x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042647965.1-RS_2024_10_06
            Annotation Date                   :: 10/06/2024 12:38:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,978
            CDSs (total)                      :: 2,926
            Genes (coding)                    :: 2,920
            CDSs (with protein)               :: 2,920
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 2 of 6
            Pseudo Genes (incomplete)         :: 4 of 6
            Pseudo Genes (internal stop)      :: 0 of 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708740
                     /organism="Halobacterium litoreum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12562"
                     /type_material="type strain of Halobacterium litoreum"
                     /db_xref="taxon:2039234"
                     /collection_date="2019"
WGS         JBHRWN010000001-JBHRWN010000002
WGS_SCAFLD  NZ_JBHRWN010000001-NZ_JBHRWN010000002
//
LOCUS       NZ_JBHSDN010000000   3760160 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Haloarchaeobius iranensis strain IBRC-M 10013, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSDN000000000
VERSION     NZ_JBHSDN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43281915
            Assembly: GCF_042651705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius iranensis
  ORGANISM  Haloarchaeobius iranensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 3760160)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3760160)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSDN000000000.1.
            The Haloarchaeobius iranensis whole genome shotgun (WGS) project
            has the project accession NZ_JBHSDN000000000.  This version of the
            project (01) has the accession number NZ_JBHSDN010000000, and
            consists of sequences JBHSDN010000001-JBHSDN010000070.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042651705.1-RS_2024_10_06
            Annotation Date                   :: 10/06/2024 13:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,876
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,743
            CDSs (with protein)               :: 3,743
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 15 of 80
            Pseudo Genes (incomplete)         :: 65 of 80
            Pseudo Genes (internal stop)      :: 10 of 80
            Pseudo Genes (multiple problems)  :: 8 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3760160
                     /organism="Haloarchaeobius iranensis"
                     /mol_type="genomic DNA"
                     /strain="IBRC-M 10013"
                     /type_material="type strain of Haloarchaeobius iranensis"
                     /db_xref="taxon:996166"
                     /collection_date="2020"
WGS         JBHSDN010000001-JBHSDN010000070
WGS_SCAFLD  NZ_JBHSDN010000001-NZ_JBHSDN010000070
//
LOCUS       NZ_JBHUJM010000000   3993982 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Haloarchaeobius iranensis strain IBRC-M 10013, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUJM000000000
VERSION     NZ_JBHUJM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282489
            Assembly: GCF_042683225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius iranensis
  ORGANISM  Haloarchaeobius iranensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 3993982)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3993982)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUJM000000000.1.
            The Haloarchaeobius iranensis whole genome shotgun (WGS) project
            has the project accession NZ_JBHUJM000000000.  This version of the
            project (01) has the accession number NZ_JBHUJM010000000, and
            consists of sequences JBHUJM010000001-JBHUJM010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 350.17x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042683225.1-RS_2024_10_07
            Annotation Date                   :: 10/07/2024 16:07:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,158
            CDSs (total)                      :: 4,101
            Genes (coding)                    :: 4,016
            CDSs (with protein)               :: 4,016
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 34 of 85
            Pseudo Genes (incomplete)         :: 52 of 85
            Pseudo Genes (internal stop)      :: 10 of 85
            Pseudo Genes (multiple problems)  :: 9 of 85
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993982
                     /organism="Haloarchaeobius iranensis"
                     /mol_type="genomic DNA"
                     /strain="IBRC-M 10013"
                     /type_material="type strain of Haloarchaeobius iranensis"
                     /db_xref="taxon:996166"
                     /collection_date="2021"
WGS         JBHUJM010000001-JBHUJM010000007
WGS_SCAFLD  NZ_JBHUJM010000001-NZ_JBHUJM010000007
//
LOCUS       NZ_JAOPKC010000000   3360058 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Halapricum hydrolyticum strain HArc-curdl5-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOPKC000000000
VERSION     NZ_JAOPKC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30921870
            Assembly: GCF_025517535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halapricum hydrolyticum
  ORGANISM  Halapricum hydrolyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halapricum.
REFERENCE   1  (bases 1 to 3360058)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Khizhniak,T.V., Kolganova,T.V. and
            Kublanov,I.V.
  TITLE     Enrichment on poylsaccharides allowed isolation of novel metabolic
            and taxonomic groups of Haloarchaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3360058)
  AUTHORS   Elcheninov,A.G., Kublanov,I.V. and Sorokin,D.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2022) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOPKC000000000.1.
            The Halapricum hydrolyticum whole genome shotgun (WGS) project has
            the project accession NZ_JAOPKC000000000.  This version of the
            project (01) has the accession number NZ_JAOPKC010000000, and
            consists of sequences JAOPKC010000001-JAOPKC010000062.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025517535.1-RS_2024_10_11
            Annotation Date                   :: 10/11/2024 19:30:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,397
            CDSs (total)                      :: 3,342
            Genes (coding)                    :: 3,279
            CDSs (with protein)               :: 3,279
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 16 of 63
            Pseudo Genes (incomplete)         :: 41 of 63
            Pseudo Genes (internal stop)      :: 15 of 63
            Pseudo Genes (multiple problems)  :: 7 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3360058
                     /organism="Halapricum hydrolyticum"
                     /mol_type="genomic DNA"
                     /strain="HArc-curdl5-1"
                     /isolation_source="sediment and brine samples obtained
                     from hypersaline lake"
                     /type_material="type strain of Halapricum hydrolyticum"
                     /db_xref="taxon:2979991"
                     /geo_loc_name="Russia: Altai Region"
                     /lat_lon="51.7 N 79.7 E"
                     /collection_date="2017-07"
WGS         JAOPKC010000001-JAOPKC010000062
WGS_SCAFLD  NZ_JAOPKC010000001-NZ_JAOPKC010000062
//
LOCUS       NZ_JAOPKD010000000   3383408 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Halapricum hydrolyticum strain HArc-curdl7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOPKD000000000
VERSION     NZ_JAOPKD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30921871
            Assembly: GCF_025517565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halapricum hydrolyticum
  ORGANISM  Halapricum hydrolyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halapricum.
REFERENCE   1  (bases 1 to 3383408)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Khizhniak,T.V., Kolganova,T.V. and
            Kublanov,I.V.
  TITLE     Enrichment on poylsaccharides allowed isolation of novel metabolic
            and taxonomic groups of Haloarchaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3383408)
  AUTHORS   Elcheninov,A.G., Kublanov,I.V. and Sorokin,D.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2022) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOPKD000000000.1.
            The Halapricum hydrolyticum whole genome shotgun (WGS) project has
            the project accession NZ_JAOPKD000000000.  This version of the
            project (01) has the accession number NZ_JAOPKD010000000, and
            consists of sequences JAOPKD010000001-JAOPKD010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 766x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025517565.1-RS_2024_10_11
            Annotation Date                   :: 10/11/2024 19:36:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,410
            CDSs (total)                      :: 3,356
            Genes (coding)                    :: 3,295
            CDSs (with protein)               :: 3,295
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 15 of 61
            Pseudo Genes (incomplete)         :: 38 of 61
            Pseudo Genes (internal stop)      :: 17 of 61
            Pseudo Genes (multiple problems)  :: 7 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3383408
                     /organism="Halapricum hydrolyticum"
                     /mol_type="genomic DNA"
                     /strain="HArc-curdl7"
                     /isolation_source="sediment and brine samples obtained
                     from hypersaline lake"
                     /db_xref="taxon:2979991"
                     /geo_loc_name="Russia: Altai Region"
                     /lat_lon="51.7001 N 79.7 E"
                     /collection_date="2017-07"
WGS         JAOPKD010000001-JAOPKD010000052
WGS_SCAFLD  NZ_JAOPKD010000001-NZ_JAOPKD010000052
//
LOCUS       NZ_VHLL01000000      2645187 bp    DNA     linear   BCT 13-OCT-2024
DEFINITION  Methanoculleus formosensis strain Afa-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VHLL00000000
VERSION     NZ_VHLL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12106768
            Assembly: GCF_025384765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus formosensis
  ORGANISM  Methanoculleus formosensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2645187)
  AUTHORS   You,Y.-T., Chen,S.-C., Lai,S.-J., Lee,Y.-C. and Lai,M.-C.
  TITLE     Methanoculleus strain from Tamsui River, Taipei, Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2645187)
  AUTHORS   You,Y.-T., Chen,S.-C., Lai,S.-J., Lee,Y.-C. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUN-2019) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VHLL00000000.1.
            The Methanoculleus formosensis whole genome shotgun (WGS) project
            has the project accession NZ_VHLL00000000.  This version of the
            project (01) has the accession number NZ_VHLL01000000, and consists
            of sequences VHLL01000001-VHLL01000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Department of Life Sciences,
            National Chung Hsing University, Taichung, Taiwan; PI: Prof.
            Mei-Chin Lai.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JUN-2019
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 204.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025384765.1-RS_2024_10_11
            Annotation Date                   :: 10/11/2024 19:07:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,628
            Genes (coding)                    :: 2,615
            CDSs (with protein)               :: 2,615
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 4 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 3 of 13
            Pseudo Genes (multiple problems)  :: 2 of 13
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645187
                     /organism="Methanoculleus formosensis"
                     /mol_type="genomic DNA"
                     /strain="Afa-1"
                     /isolation_source="estuary sediment"
                     /type_material="type strain of Methanoculleus formosensis"
                     /db_xref="taxon:2590886"
                     /geo_loc_name="Taiwan: Tamsui River, Taipei"
                     /collection_date="2002-01-17"
                     /identified_by="Yi-Ting You, Shu-Jung Lai, Yu-Chien Lee,
                     Sheng-Chung Chen and Mei-Chin Lai"
WGS         VHLL01000001-VHLL01000019
WGS_SCAFLD  NZ_VHLL01000001-NZ_VHLL01000019
//
LOCUS       NZ_JBBYJF010000000   1773944 bp    DNA     linear   ENV 18-OCT-2024
DEFINITION  MAG: Acidiplasma aeolicum isolate LAZ-3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBYJF000000000
VERSION     NZ_JBBYJF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40547755
            Assembly: GCF_043195295.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Acidiplasma aeolicum (sediment metagenome)
  ORGANISM  Acidiplasma aeolicum
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1773944)
  AUTHORS   Marin Paredes,R. and Servin Garciduenas,L.E.
  TITLE     Microbial diversity of Thermoplasmatales archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1773944)
  AUTHORS   Marin Paredes,R. and Servin Garciduenas,L.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2024) Laboratorio de Microbiomica, UNAM, bosque
            de dalias 119, Tarimbaro 588983, Mexico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBYJF000000000.1.
            The Acidiplasma aeolicum whole genome shotgun (WGS) project has the
            project accession NZ_JBBYJF000000000.  This version of the project
            (01) has the accession number NZ_JBBYJF010000000, and consists of
            sequences JBBYJF010000001-JBBYJF010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3.8x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_043195295.1-RS_2024_10_18
            Annotation Date                   :: 10/18/2024 12:16:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,896
            CDSs (total)                      :: 1,841
            Genes (coding)                    :: 1,808
            CDSs (with protein)               :: 1,808
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 6 of 33
            Pseudo Genes (incomplete)         :: 28 of 33
            Pseudo Genes (internal stop)      :: 4 of 33
            Pseudo Genes (multiple problems)  :: 4 of 33
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773944
                     /organism="Acidiplasma aeolicum"
                     /mol_type="genomic DNA"
                     /isolate="LAZ-3"
                     /isolation_source="steam vents from geothermal field"
                     /db_xref="taxon:507754"
                     /environmental_sample
                     /geo_loc_name="Mexico: Los Azufres geothermal field"
                     /lat_lon="19.7816 N 100.6577 W"
                     /collection_date="2019-04-01"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JBBYJF010000001-JBBYJF010000056
WGS_SCAFLD  NZ_JBBYJF010000001-NZ_JBBYJF010000056
//
LOCUS       NZ_AOMC01000000      2991556 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halococcus morrhuae DSM 1307, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOMC00000000
VERSION     NZ_AOMC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471675
            Assembly: GCF_000336695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus morrhuae DSM 1307
  ORGANISM  Halococcus morrhuae DSM 1307
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 2991556)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2991556)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOMC00000000.1.
            The Halococcus morrhuae DSM 1307 whole genome shotgun (WGS) project
            has the project accession NZ_AOMC00000000.  This version of the
            project (01) has the accession number NZ_AOMC01000000, and consists
            of sequences AOMC01000001-AOMC01000167.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336695.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:39:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,128
            CDSs (total)                      :: 3,079
            Genes (coding)                    :: 2,936
            CDSs (with protein)               :: 2,936
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 143
            CDSs (without protein)            :: 143
            Pseudo Genes (ambiguous residues) :: 1 of 143
            Pseudo Genes (frameshifted)       :: 55 of 143
            Pseudo Genes (incomplete)         :: 100 of 143
            Pseudo Genes (internal stop)      :: 5 of 143
            Pseudo Genes (multiple problems)  :: 18 of 143
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991556
                     /organism="Halococcus morrhuae DSM 1307"
                     /mol_type="genomic DNA"
                     /strain="DSM 1307"
                     /culture_collection="DSM:1307"
                     /type_material="type strain of 'Sarcina morrhuae' Farlow
                     1880"
                     /db_xref="taxon:931277"
WGS         AOMC01000001-AOMC01000167
WGS_SCAFLD  NZ_AOMC01000001-NZ_AOMC01000167
//
LOCUS       NZ_AOJI01000000      3108525 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum aidingense JCM 13560, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJI00000000
VERSION     NZ_AOJI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471664
            Assembly: GCF_000336995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum aidingense JCM 13560
  ORGANISM  Halorubrum aidingense JCM 13560
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3108525)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108525)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJI00000000.1.
            The Halorubrum aidingense JCM 13560 whole genome shotgun (WGS)
            project has the project accession NZ_AOJI00000000.  This version of
            the project (01) has the accession number NZ_AOJI01000000, and
            consists of sequences AOJI01000001-AOJI01000037.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336995.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:39:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,124
            CDSs (total)                      :: 3,060
            Genes (coding)                    :: 3,011
            CDSs (with protein)               :: 3,011
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 2, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 6 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 16 of 49
            Pseudo Genes (incomplete)         :: 38 of 49
            Pseudo Genes (internal stop)      :: 3 of 49
            Pseudo Genes (multiple problems)  :: 8 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108525
                     /organism="Halorubrum aidingense JCM 13560"
                     /mol_type="genomic DNA"
                     /strain="JCM 13560"
                     /culture_collection="JCM:13560"
                     /type_material="type strain of Halorubrum aidingense"
                     /db_xref="taxon:1230454"
WGS         AOJI01000001-AOJI01000037
WGS_SCAFLD  NZ_AOJI01000001-NZ_AOJI01000037
//
LOCUS       NZ_AOJO01000000      3037532 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum hochstenium ATCC 700873, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJO00000000
VERSION     NZ_AOJO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471650
            Assembly: GCF_000337075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum hochstenium ATCC 700873
  ORGANISM  Halorubrum hochstenium ATCC 700873
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3037532)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3037532)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJO00000000.1.
            The Halorubrum hochstenium ATCC 700873 whole genome shotgun (WGS)
            project has the project accession NZ_AOJO00000000.  This version of
            the project (01) has the accession number NZ_AOJO01000000, and
            consists of sequences AOJO01000001-AOJO01000064.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337075.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:40:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,095
            CDSs (total)                      :: 3,034
            Genes (coding)                    :: 2,967
            CDSs (with protein)               :: 2,967
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 2, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 9 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 15 of 67
            Pseudo Genes (incomplete)         :: 47 of 67
            Pseudo Genes (internal stop)      :: 7 of 67
            Pseudo Genes (multiple problems)  :: 2 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3037532
                     /organism="Halorubrum hochstenium ATCC 700873"
                     /mol_type="genomic DNA"
                     /strain="ATCC 700873"
                     /culture_collection="ATCC:700873"
                     /db_xref="taxon:1227481"
WGS         AOJO01000001-AOJO01000064
WGS_SCAFLD  NZ_AOJO01000001-NZ_AOJO01000064
//
LOCUS       NZ_AEMG01000000      4284805 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haladaptatus paucihalophilus DX253, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEMG00000000
VERSION     NZ_AEMG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470763
            Assembly: GCF_000187225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus paucihalophilus DX253
  ORGANISM  Haladaptatus paucihalophilus DX253
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 4284805)
  AUTHORS   Youssef,N.H., Savage-Ashlock,K.N., McCully,A.L., Luedtke,B.,
            Shaw,E.I., Hoff,W.D. and Elshahed,M.S.
  TITLE     Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake
            are widely spread mechanisms for osmoadaptation in the
            Halobacteriales
  JOURNAL   ISME J 8 (3), 636-649 (2014)
   PUBMED   24048226
REFERENCE   2  (bases 1 to 4284805)
  AUTHORS   Savage-Ashlock,K.N., Najar,F.Z. and Elshahed,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2010) Microbiology and Molecular Genetics,
            Oklahoma State University, 1110 S. Innovation Way, Stillwater, OK
            74074, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEMG00000000.1.
            The Haladaptatus paucihalophilus DX253 whole genome shotgun (WGS)
            project has the project accession NZ_AEMG00000000.  This version of
            the project (01) has the accession number NZ_AEMG01000000, and
            consists of sequences AEMG01000001-AEMG01000032.
            DNA Source:  Mostafa Elshahed Oklahoma State University Department
            of Microbiology and Molecular Genetics
            
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. May 2009
            Genome Coverage       :: 50x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000187225.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:38:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,392
            CDSs (total)                      :: 4,335
            Genes (coding)                    :: 4,303
            CDSs (with protein)               :: 4,303
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 2, 3 (5S, 16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 9 of 32
            Pseudo Genes (incomplete)         :: 24 of 32
            Pseudo Genes (internal stop)      :: 7 of 32
            Pseudo Genes (multiple problems)  :: 7 of 32
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284805
                     /organism="Haladaptatus paucihalophilus DX253"
                     /mol_type="genomic DNA"
                     /strain="DX253"
                     /isolation_source="low-salt sulfur and sulfide-rich
                     spring"
                     /type_material="type strain of Haladaptatus
                     paucihalophilus"
                     /db_xref="taxon:797209"
                     /geo_loc_name="USA: southwestern Oklahoma"
WGS         AEMG01000001-AEMG01000032
WGS_SCAFLD  NZ_AEMG01000001-NZ_AEMG01000032
//
LOCUS       NZ_AMPO01000000      2684267 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobacterium formicicum DSM 3637, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AMPO00000000
VERSION     NZ_AMPO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471940
            Assembly: GCF_000302455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium formicicum DSM 3637
  ORGANISM  Methanobacterium formicicum DSM 3637
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2684267)
  AUTHORS   Gutierrez,G.
  TITLE     Draft genome sequence of Methanobacterium formicicum DSM 3637, an
            Archaebacterium isolated from the methane producer amoeba Pelomyxa
            palustris
  JOURNAL   J Bacteriol 194 (24), 6967-6968 (2012)
   PUBMED   23209223
REFERENCE   2  (bases 1 to 2684267)
  AUTHORS   Gutierrez,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2012) Genetics, University of Seville, Reina
            Mercedes s/n, Seville, Seville 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AMPO00000000.1.
            The Methanobacterium formicicum DSM 3637 whole genome shotgun (WGS)
            project has the project accession NZ_AMPO00000000.  This version of
            the project (01) has the accession number NZ_AMPO01000000, and
            consists of sequences AMPO01000001-AMPO01000028.
            Source DNA is available from the German Collection of
            Microorganisms and Cell   Cultures (DSMZ).
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.5.3
            Genome Coverage       :: 60x
            Sequencing Technology :: 454 GS FLX Titanium
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000302455.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:36:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,605
            CDSs (total)                      :: 2,550
            Genes (coding)                    :: 2,540
            CDSs (with protein)               :: 2,540
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 2 of 10
            Pseudo Genes (incomplete)         :: 9 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684267
                     /organism="Methanobacterium formicicum DSM 3637"
                     /mol_type="genomic DNA"
                     /strain="DSM 3637"
                     /host="Pelomyxa palustris"
                     /culture_collection="DSM:3637"
                     /db_xref="taxon:1204725"
                     /geo_loc_name="Netherlands: Nijmegen"
                     /collection_date="1998"
                     /note="endosymbiont"
WGS         AMPO01000001-AMPO01000028
WGS_SCAFLD  NZ_AMPO01000001-NZ_AMPO01000028
//
LOCUS       NZ_AOJJ01000000      3382601 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum distributum JCM 13916, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJJ00000000
VERSION     NZ_AOJJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471647
            Assembly: GCF_000337015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum distributum JCM 13916
  ORGANISM  Halorubrum distributum JCM 13916
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            Halorubrum distributum group.
REFERENCE   1  (bases 1 to 3382601)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3382601)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJJ00000000.1.
            The Halorubrum distributum JCM 13916 whole genome shotgun (WGS)
            project has the project accession NZ_AOJJ00000000.  This version of
            the project (01) has the accession number NZ_AOJJ01000000, and
            consists of sequences AOJJ01000001-AOJJ01000110.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337015.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:38:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,460
            CDSs (total)                      :: 3,386
            Genes (coding)                    :: 3,296
            CDSs (with protein)               :: 3,296
            Genes (RNA)                       :: 74
            rRNAs                             :: 3, 7, 11 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 7, 11 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 34 of 90
            Pseudo Genes (incomplete)         :: 62 of 90
            Pseudo Genes (internal stop)      :: 7 of 90
            Pseudo Genes (multiple problems)  :: 12 of 90
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3382601
                     /organism="Halorubrum distributum JCM 13916"
                     /mol_type="genomic DNA"
                     /strain="JCM 13916"
                     /culture_collection="JCM:13916"
                     /type_material="type strain of Halorubrum arcis"
                     /db_xref="taxon:1230455"
WGS         AOJJ01000001-AOJJ01000110
WGS_SCAFLD  NZ_AOJJ01000001-NZ_AOJJ01000110
//
LOCUS       NZ_AOJN01000000      3306135 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum distributum JCM 10118, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJN00000000
VERSION     NZ_AOJN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471649
            Assembly: GCF_000337335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum distributum JCM 10118
  ORGANISM  Halorubrum distributum JCM 10118
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            Halorubrum distributum group.
REFERENCE   1  (bases 1 to 3306135)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3306135)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJN00000000.1.
            The Halorubrum distributum JCM 10118 whole genome shotgun (WGS)
            project has the project accession NZ_AOJN00000000.  This version of
            the project (01) has the accession number NZ_AOJN01000000, and
            consists of sequences AOJN01000001-AOJN01000068.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337335.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:40:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,295
            CDSs (total)                      :: 3,235
            Genes (coding)                    :: 3,167
            CDSs (with protein)               :: 3,167
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 2, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 8 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 30 of 68
            Pseudo Genes (incomplete)         :: 44 of 68
            Pseudo Genes (internal stop)      :: 14 of 68
            Pseudo Genes (multiple problems)  :: 17 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306135
                     /organism="Halorubrum distributum JCM 10118"
                     /mol_type="genomic DNA"
                     /strain="JCM 10118"
                     /culture_collection="JCM:10118"
                     /type_material="type strain of Halobacterium distributum"
                     /db_xref="taxon:1227468"
WGS         AOJN01000001-AOJN01000068
WGS_SCAFLD  NZ_AOJN01000001-NZ_AOJN01000068
//
LOCUS       NZ_AOLO01000000      3894540 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloferax mediterranei ATCC 33500, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLO00000000
VERSION     NZ_AOLO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471643
            Assembly: GCF_000337295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax mediterranei ATCC 33500
  ORGANISM  Haloferax mediterranei ATCC 33500
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3894540)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3894540)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLO00000000.1.
            The Haloferax mediterranei ATCC 33500 whole genome shotgun (WGS)
            project has the project accession NZ_AOLO00000000.  This version of
            the project (01) has the accession number NZ_AOLO01000000, and
            consists of sequences AOLO01000001-AOLO01000016.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Roche 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337295.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,939
            CDSs (total)                      :: 3,877
            Genes (coding)                    :: 3,804
            CDSs (with protein)               :: 3,804
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 31 of 73
            Pseudo Genes (incomplete)         :: 54 of 73
            Pseudo Genes (internal stop)      :: 21 of 73
            Pseudo Genes (multiple problems)  :: 23 of 73
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3894540
                     /organism="Haloferax mediterranei ATCC 33500"
                     /mol_type="genomic DNA"
                     /strain="ATCC 33500"
                     /culture_collection="ATCC:33500"
                     /type_material="type strain of Halobacterium mediterranei"
                     /db_xref="taxon:523841"
WGS         AOLO01000001-AOLO01000016
WGS_SCAFLD  NZ_AOLO01000001-NZ_AOLO01000016
//
LOCUS       NZ_AOJF01000000      3137757 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum distributum JCM 13561, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJF00000000
VERSION     NZ_AOJF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471646
            Assembly: GCF_000337395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum distributum JCM 13561
  ORGANISM  Halorubrum distributum JCM 13561
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            Halorubrum distributum group.
REFERENCE   1  (bases 1 to 3137757)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3137757)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJF00000000.1.
            The Halorubrum distributum JCM 13561 whole genome shotgun (WGS)
            project has the project accession NZ_AOJF00000000.  This version of
            the project (01) has the accession number NZ_AOJF01000000, and
            consists of sequences AOJF01000001-AOJF01000063.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337395.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:44:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,161
            CDSs (total)                      :: 3,104
            Genes (coding)                    :: 3,051
            CDSs (with protein)               :: 3,051
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 17 of 53
            Pseudo Genes (incomplete)         :: 37 of 53
            Pseudo Genes (internal stop)      :: 6 of 53
            Pseudo Genes (multiple problems)  :: 7 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137757
                     /organism="Halorubrum distributum JCM 13561"
                     /mol_type="genomic DNA"
                     /strain="JCM 13561"
                     /culture_collection="JCM:13561"
                     /type_material="type strain of Halorubrum litoreum"
                     /db_xref="taxon:1227483"
WGS         AOJF01000001-AOJF01000063
WGS_SCAFLD  NZ_AOJF01000001-NZ_AOJF01000063
//
LOCUS       NZ_AOLX01000000      4147107 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloarcula argentinensis DSM 12282, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLX00000000
VERSION     NZ_AOLX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471678
            Assembly: GCF_000336895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula argentinensis DSM 12282
  ORGANISM  Haloarcula argentinensis DSM 12282
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4147107)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4147107)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLX00000000.1.
            The Haloarcula argentinensis DSM 12282 whole genome shotgun (WGS)
            project has the project accession NZ_AOLX00000000.  This version of
            the project (01) has the accession number NZ_AOLX01000000, and
            consists of sequences AOLX01000001-AOLX01000033.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336895.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,264
            CDSs (total)                      :: 4,183
            Genes (coding)                    :: 4,114
            CDSs (with protein)               :: 4,114
            Genes (RNA)                       :: 81
            rRNAs                             :: 1, 5, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 5, 6 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 26 of 69
            Pseudo Genes (incomplete)         :: 45 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 14 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4147107
                     /organism="Haloarcula argentinensis DSM 12282"
                     /mol_type="genomic DNA"
                     /strain="DSM 12282"
                     /culture_collection="DSM:12282"
                     /type_material="type strain of Haloarcula argentinensis"
                     /db_xref="taxon:1230451"
WGS         AOLX01000001-AOLX01000033
WGS_SCAFLD  NZ_AOLX01000001-NZ_AOLX01000033
//
LOCUS       NZ_AOMF01000000      4052434 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halococcus thailandensis JCM 13552, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOMF00000000
VERSION     NZ_AOMF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471640
            Assembly: GCF_000336715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus thailandensis JCM 13552
  ORGANISM  Halococcus thailandensis JCM 13552
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 4052434)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4052434)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOMF00000000.1.
            The Halococcus thailandensis JCM 13552 whole genome shotgun (WGS)
            project has the project accession NZ_AOMF00000000.  This version of
            the project (01) has the accession number NZ_AOMF01000000, and
            consists of sequences AOMF01000001-AOMF01000198.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336715.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:41:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,240
            CDSs (total)                      :: 4,171
            Genes (coding)                    :: 3,940
            CDSs (with protein)               :: 3,940
            Genes (RNA)                       :: 69
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 231
            CDSs (without protein)            :: 231
            Pseudo Genes (ambiguous residues) :: 0 of 231
            Pseudo Genes (frameshifted)       :: 98 of 231
            Pseudo Genes (incomplete)         :: 163 of 231
            Pseudo Genes (internal stop)      :: 25 of 231
            Pseudo Genes (multiple problems)  :: 45 of 231
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4052434
                     /organism="Halococcus thailandensis JCM 13552"
                     /mol_type="genomic DNA"
                     /strain="JCM 13552"
                     /culture_collection="JCM:13552"
                     /type_material="type strain of Halococcus thailandensis"
                     /db_xref="taxon:1227457"
WGS         AOMF01000001-AOMF01000198
WGS_SCAFLD  NZ_AOMF01000001-NZ_AOMF01000198
//
LOCUS       NZ_AOHV01000000      3614122 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halalkalicoccus jeotgali B3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOHV00000000
VERSION     NZ_AOHV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471620
            Assembly: GCF_000337255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus jeotgali B3
  ORGANISM  Halalkalicoccus jeotgali B3
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 3614122)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3614122)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOHV00000000.1.
            The Halalkalicoccus jeotgali B3 whole genome shotgun (WGS) project
            has the project accession NZ_AOHV00000000.  This version of the
            project (01) has the accession number NZ_AOHV01000000, and consists
            of sequences AOHV01000001-AOHV01000052.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337255.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:42:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,860
            CDSs (total)                      :: 3,806
            Genes (coding)                    :: 3,694
            CDSs (with protein)               :: 3,694
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 34 of 112
            Pseudo Genes (incomplete)         :: 80 of 112
            Pseudo Genes (internal stop)      :: 14 of 112
            Pseudo Genes (multiple problems)  :: 13 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3614122
                     /organism="Halalkalicoccus jeotgali B3"
                     /mol_type="genomic DNA"
                     /strain="B3"
                     /culture_collection="DSM:18796"
                     /type_material="type strain of Halalkalicoccus jeotgali"
                     /db_xref="taxon:795797"
WGS         AOHV01000001-AOHV01000052
WGS_SCAFLD  NZ_AOHV01000001-NZ_AOHV01000052
//
LOCUS       NZ_AJRK01000000      3383679 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halococcus hamelinensis 100A6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AJRK00000000
VERSION     NZ_AJRK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470884
            Assembly: GCF_000259215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus hamelinensis 100A6
  ORGANISM  Halococcus hamelinensis 100A6
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 3383679)
  AUTHORS   Burns,B.P., Gudhka,R.K. and Neilan,B.A.
  TITLE     Genome sequence of the halophilic archaeon Halococcus hamelinensis
  JOURNAL   J Bacteriol 194 (8), 2100-2101 (2012)
   PUBMED   22461544
REFERENCE   2  (bases 1 to 3383679)
  AUTHORS   Burns,B.P. and Gudhka,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2012) School of Biotechnology and Biomolecular
            Sciences, Gate 9, High Street Kensington, Sydney, NSW 2052,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AJRK00000000.1.
            The Halococcus hamelinensis 100A6 whole genome shotgun (WGS)
            project has the project accession NZ_AJRK00000000.  This version of
            the project (01) has the accession number NZ_AJRK01000000, and
            consists of sequences AJRK01000001-AJRK01000453.
            Bacteria available from Japan Collection of Microorganisms (JCM
            12892T).
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 27-JUL-2009
            Assembly Method       :: Newbler v. 2.0.01.12
            Genome Coverage       :: 32x
            Sequencing Technology :: 454 GS FLX Titanium
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000259215.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:42:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,651
            CDSs (total)                      :: 3,600
            Genes (coding)                    :: 3,442
            CDSs (with protein)               :: 3,442
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 27 of 158
            Pseudo Genes (incomplete)         :: 133 of 158
            Pseudo Genes (internal stop)      :: 4 of 158
            Pseudo Genes (multiple problems)  :: 5 of 158
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3383679
                     /organism="Halococcus hamelinensis 100A6"
                     /mol_type="genomic DNA"
                     /strain="100A6"
                     /isolation_source="stromatolites"
                     /type_material="type strain of Halococcus hamelinensis"
                     /db_xref="taxon:1132509"
                     /geo_loc_name="Australia: Shark Bay, Hamelin Pool"
                     /collection_date="2002-04-01"
WGS         AJRK01000001-AJRK01000453
WGS_SCAFLD  NZ_AJRK01000001-NZ_AJRK01000453
//
LOCUS       NZ_ALWQ01000000      3167951 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum sp. T3, whole genome shotgun sequencing project.
ACCESSION   NZ_ALWQ00000000
VERSION     NZ_ALWQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470121
            Assembly: GCF_000296615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. T3
  ORGANISM  Halorubrum sp. T3
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3167951)
  AUTHORS   Chen,S., Wang,C., Zhao,Z. and Yang,Z.L.
  TITLE     Genome sequence of Halorubrum sp. strain T3, an extremely
            halophilic archaeon harboring a virus-like element
  JOURNAL   J Bacteriol 194 (23), 6608-6609 (2012)
   PUBMED   23144373
REFERENCE   2  (bases 1 to 3167951)
  AUTHORS   Chen,S.-X., Wang,C. and Yang,Z.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2012) Key Laboratory of Biodiversity and
            Biogeography, Kunming Institute of Botany, Chinese Academy of
            Sciences, 132 Lanhei Road, Heilongtan, Kunming, Yunnan 650201,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ALWQ00000000.1.
            The Halorubrum sp. T3 whole genome shotgun (WGS) project has the
            project accession NZ_ALWQ00000000.  This version of the project
            (01) has the accession number NZ_ALWQ01000000, and consists of
            sequences ALWQ01000001-ALWQ01000016.
            Bacteria and source DNA available from Dr. Zhu L. Yang, Key
            Laboratory of Biodiversity and Biogeography, Kunming Institute of
            Botany, Chinese Academy of Sciences, 132 Lanhei Road, Heilongtan,
            Kunming 650201, Yunnan, China.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.05
            Genome Coverage       :: 100.0x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000296615.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,159
            CDSs (total)                      :: 3,101
            Genes (coding)                    :: 3,061
            CDSs (with protein)               :: 3,061
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 14 of 40
            Pseudo Genes (incomplete)         :: 29 of 40
            Pseudo Genes (internal stop)      :: 7 of 40
            Pseudo Genes (multiple problems)  :: 7 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3167951
                     /organism="Halorubrum sp. T3"
                     /mol_type="genomic DNA"
                     /strain="T3"
                     /isolation_source="solar saltern from Mohei salt mine"
                     /db_xref="taxon:1194088"
                     /geo_loc_name="China: Yunnan"
                     /collection_date="2009-09"
WGS         ALWQ01000001-ALWQ01000016
WGS_SCAFLD  NZ_ALWQ01000008-NZ_ALWQ01000010
WGS_SCAFLD  NZ_ALWQ01000013-NZ_ALWQ01000016
WGS_SCAFLD  NZ_JH815329-NZ_JH815331
//
LOCUS       NZ_AOJD01000000      3328860 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum tebenquichense DSM 14210, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AOJD00000000
VERSION     NZ_AOJD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471631
            Assembly: GCF_000337415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum tebenquichense DSM 14210
  ORGANISM  Halorubrum tebenquichense DSM 14210
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3328860)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328860)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJD00000000.1.
            The Halorubrum tebenquichense DSM 14210 whole genome shotgun (WGS)
            project has the project accession NZ_AOJD00000000.  This version of
            the project (01) has the accession number NZ_AOJD01000000, and
            consists of sequences AOJD01000001-AOJD01000093.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337415.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,440
            CDSs (total)                      :: 3,383
            Genes (coding)                    :: 3,286
            CDSs (with protein)               :: 3,286
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 33 of 97
            Pseudo Genes (incomplete)         :: 65 of 97
            Pseudo Genes (internal stop)      :: 10 of 97
            Pseudo Genes (multiple problems)  :: 10 of 97
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328860
                     /organism="Halorubrum tebenquichense DSM 14210"
                     /mol_type="genomic DNA"
                     /strain="DSM 14210"
                     /culture_collection="DSM:14210"
                     /type_material="type strain of Halorubrum tebenquichense"
                     /db_xref="taxon:1227485"
WGS         AOJD01000001-AOJD01000093
WGS_SCAFLD  NZ_AOJD01000001-NZ_AOJD01000093
//
LOCUS       NZ_AOIQ01000000      3238452 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halovivax asiaticus JCM 14624, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIQ00000000
VERSION     NZ_AOIQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471651
            Assembly: GCF_000337515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovivax asiaticus JCM 14624
  ORGANISM  Halovivax asiaticus JCM 14624
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halovivax.
REFERENCE   1  (bases 1 to 3238452)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3238452)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIQ00000000.1.
            The Halovivax asiaticus JCM 14624 whole genome shotgun (WGS)
            project has the project accession NZ_AOIQ00000000.  This version of
            the project (01) has the accession number NZ_AOIQ01000000, and
            consists of sequences AOIQ01000001-AOIQ01000024.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337515.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:42:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,237
            CDSs (total)                      :: 3,187
            Genes (coding)                    :: 3,143
            CDSs (with protein)               :: 3,143
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 13 of 44
            Pseudo Genes (incomplete)         :: 35 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 5 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3238452
                     /organism="Halovivax asiaticus JCM 14624"
                     /mol_type="genomic DNA"
                     /strain="JCM 14624"
                     /culture_collection="JCM:14624"
                     /type_material="type strain of Halovivax asiaticus"
                     /db_xref="taxon:1227490"
WGS         AOIQ01000001-AOIQ01000024
WGS_SCAFLD  NZ_AOIQ01000001-NZ_AOIQ01000024
//
LOCUS       NZ_AJLF01000000      1764559 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Thermococcus zilligii AN1, whole genome shotgun sequencing project.
ACCESSION   NZ_AJLF00000000
VERSION     NZ_AJLF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470188
            Assembly: GCF_000258515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus zilligii AN1
  ORGANISM  Thermococcus zilligii AN1
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1764559)
  AUTHORS   Kim,B.K., Lee,S.H., Kim,S.Y., Jeong,H., Kwon,S.K., Lee,C.H.,
            Song,J.Y., Yu,D.S., Kang,S.G. and Kim,J.F.
  TITLE     Genome sequence of an oligohaline hyperthermophilic archaeon,
            Thermococcus zilligii AN1, isolated from a terrestrial geothermal
            freshwater spring
  JOURNAL   J Bacteriol 194 (14), 3765-3766 (2012)
   PUBMED   22740682
REFERENCE   2  (bases 1 to 1764559)
  AUTHORS   Kim,B.K., Lee,S.H., Kim,S.-Y., Jeong,H., Kwon,S.-K., Lee,C.H.,
            Song,J.Y., Yu,D.S., Kang,S.G. and Kim,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2012) Systems and Synthetic Biology Research
            Center, Korea Research Institute of Bioscience and Biotechnology,
            125 Gwahak-ro Yuseong-gu, Daejeon 305-806, Republic of Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AJLF00000000.1.
            The Thermococcus zilligii AN1 whole genome shotgun (WGS) project
            has the project accession NZ_AJLF00000000.  This version of the
            project (01) has the accession number NZ_AJLF01000000, and consists
            of sequences AJLF01000001-AJLF01000005.
            Bacteria available from: DSMZ (DSM 2770).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC NGS Cell v. 4.8
            Assembly Name         :: TheZil1.0
            Long Assembly Name    :: Thermococcus zilligii AN1 1.0
            Genome Coverage       :: 3398.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000258515.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:33:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,916
            CDSs (total)                      :: 1,864
            Genes (coding)                    :: 1,833
            CDSs (with protein)               :: 1,833
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 11 of 31
            Pseudo Genes (incomplete)         :: 22 of 31
            Pseudo Genes (internal stop)      :: 2 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764559
                     /organism="Thermococcus zilligii AN1"
                     /mol_type="genomic DNA"
                     /strain="AN1"
                     /isolation_source="freshwater hot-pool in Kuirau Park"
                     /type_material="type strain of Thermococcus zilligii"
                     /db_xref="taxon:1151117"
                     /geo_loc_name="New Zealand: Rotorua"
                     /collection_date="1982"
                     /note="type strain of Thermococcus zilligii"
WGS         AJLF01000001-AJLF01000005
WGS_SCAFLD  NZ_AJLF01000001-NZ_AJLF01000005
//
LOCUS       NZ_AOLS01000000      4404932 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloarcula marismortui ATCC 33799, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLS00000000
VERSION     NZ_AOLS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471658
            Assembly: GCF_000337755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula marismortui ATCC 33799 (Haloarcula californiae ATCC
            33799)
  ORGANISM  Haloarcula marismortui ATCC 33799
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4404932)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4404932)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLS00000000.1.
            The Haloarcula marismortui ATCC 33799 whole genome shotgun (WGS)
            project has the project accession NZ_AOLS00000000.  This version of
            the project (01) has the accession number NZ_AOLS01000000, and
            consists of sequences AOLS01000001-AOLS01000133.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Roche 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337755.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:44:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,540
            CDSs (total)                      :: 4,471
            Genes (coding)                    :: 4,339
            CDSs (with protein)               :: 4,339
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 49 of 132
            Pseudo Genes (incomplete)         :: 93 of 132
            Pseudo Genes (internal stop)      :: 21 of 132
            Pseudo Genes (multiple problems)  :: 27 of 132
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4404932
                     /organism="Haloarcula marismortui ATCC 33799"
                     /mol_type="genomic DNA"
                     /strain="ATCC 33799"
                     /culture_collection="ATCC:33799"
                     /type_material="type strain of Haloarcula californiae"
                     /db_xref="taxon:662475"
WGS         AOLS01000001-AOLS01000133
WGS_SCAFLD  NZ_AOLS01000001-NZ_AOLS01000133
//
LOCUS       NZ_AOLG01000000      3998799 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloferax prahovense DSM 18310, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLG00000000
VERSION     NZ_AOLG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471666
            Assembly: GCF_000336815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax prahovense DSM 18310
  ORGANISM  Haloferax prahovense DSM 18310
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3998799)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3998799)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLG00000000.1.
            The Haloferax prahovense DSM 18310 whole genome shotgun (WGS)
            project has the project accession NZ_AOLG00000000.  This version of
            the project (01) has the accession number NZ_AOLG01000000, and
            consists of sequences AOLG01000001-AOLG01000058.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336815.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,058
            CDSs (total)                      :: 3,988
            Genes (coding)                    :: 3,897
            CDSs (with protein)               :: 3,897
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 4, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 7 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 36 of 91
            Pseudo Genes (incomplete)         :: 54 of 91
            Pseudo Genes (internal stop)      :: 9 of 91
            Pseudo Genes (multiple problems)  :: 7 of 91
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3998799
                     /organism="Haloferax prahovense DSM 18310"
                     /mol_type="genomic DNA"
                     /strain="DSM 18310"
                     /culture_collection="DSM:18310"
                     /type_material="type strain of Haloferax prahovense"
                     /db_xref="taxon:1227461"
WGS         AOLG01000001-AOLG01000058
WGS_SCAFLD  NZ_AOLG01000001-NZ_AOLG01000058
//
LOCUS       NZ_AOJE01000000      3423703 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum saccharovorum DSM 1137, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJE00000000
VERSION     NZ_AOJE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471663
            Assembly: GCF_000337915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum saccharovorum DSM 1137
  ORGANISM  Halorubrum saccharovorum DSM 1137
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3423703)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3423703)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJE00000000.1.
            The Halorubrum saccharovorum DSM 1137 whole genome shotgun (WGS)
            project has the project accession NZ_AOJE00000000.  This version of
            the project (01) has the accession number NZ_AOJE01000000, and
            consists of sequences AOJE01000001-AOJE01000072.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337915.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:42:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,407
            CDSs (total)                      :: 3,348
            Genes (coding)                    :: 3,254
            CDSs (with protein)               :: 3,254
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 7 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 28 of 94
            Pseudo Genes (incomplete)         :: 75 of 94
            Pseudo Genes (internal stop)      :: 10 of 94
            Pseudo Genes (multiple problems)  :: 16 of 94
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3423703
                     /organism="Halorubrum saccharovorum DSM 1137"
                     /mol_type="genomic DNA"
                     /strain="DSM 1137"
                     /culture_collection="DSM:1137"
                     /type_material="type strain of Halobacterium
                     saccharovorum"
                     /db_xref="taxon:1227484"
WGS         AOJE01000001-AOJE01000072
WGS_SCAFLD  NZ_AOJE01000001-NZ_AOJE01000072
//
LOCUS       NZ_AOIW01000000      3376225 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum distributum JCM 10247, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIW00000000
VERSION     NZ_AOIW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471682
            Assembly: GCF_000337435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum distributum JCM 10247
  ORGANISM  Halorubrum distributum JCM 10247
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            Halorubrum distributum group.
REFERENCE   1  (bases 1 to 3376225)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376225)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIW00000000.1.
            The Halorubrum distributum JCM 10247 whole genome shotgun (WGS)
            project has the project accession NZ_AOIW00000000.  This version of
            the project (01) has the accession number NZ_AOIW01000000, and
            consists of sequences AOIW01000001-AOIW01000079.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337435.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,443
            CDSs (total)                      :: 3,380
            Genes (coding)                    :: 3,268
            CDSs (with protein)               :: 3,268
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 4, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 7 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 32 of 112
            Pseudo Genes (incomplete)         :: 78 of 112
            Pseudo Genes (internal stop)      :: 19 of 112
            Pseudo Genes (multiple problems)  :: 14 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376225
                     /organism="Halorubrum distributum JCM 10247"
                     /mol_type="genomic DNA"
                     /strain="JCM 10247"
                     /culture_collection="JCM:10247"
                     /type_material="type strain of Halorubrum terrestre"
                     /db_xref="taxon:1227486"
WGS         AOIW01000001-AOIW01000079
WGS_SCAFLD  NZ_AOIW01000001-NZ_AOIW01000079
//
LOCUS       NZ_AOLL01000000      3649262 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloferax volcanii JCM 10717, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLL00000000
VERSION     NZ_AOLL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471657
            Assembly: GCF_000336735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii JCM 10717
  ORGANISM  Haloferax volcanii JCM 10717
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3649262)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3649262)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLL00000000.1.
            The Haloferax volcanii JCM 10717 whole genome shotgun (WGS) project
            has the project accession NZ_AOLL00000000.  This version of the
            project (01) has the accession number NZ_AOLL01000000, and consists
            of sequences AOLL01000001-AOLL01000036.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336735.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,752
            CDSs (total)                      :: 3,683
            Genes (coding)                    :: 3,623
            CDSs (with protein)               :: 3,623
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 8 (23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 1 of 60
            Pseudo Genes (frameshifted)       :: 33 of 60
            Pseudo Genes (incomplete)         :: 28 of 60
            Pseudo Genes (internal stop)      :: 7 of 60
            Pseudo Genes (multiple problems)  :: 9 of 60
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649262
                     /organism="Haloferax volcanii JCM 10717"
                     /mol_type="genomic DNA"
                     /strain="JCM 10717"
                     /culture_collection="JCM:10717"
                     /type_material="type strain of Haloferax alexandrinus"
                     /db_xref="taxon:1227458"
WGS         AOLL01000001-AOLL01000036
WGS_SCAFLD  NZ_AOLL01000001-NZ_AOLL01000036
//
LOCUS       NZ_AOJM01000000      3307369 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum distributum JCM 9100, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJM00000000
VERSION     NZ_AOJM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471665
            Assembly: GCF_000337055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum distributum JCM 9100
  ORGANISM  Halorubrum distributum JCM 9100
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            Halorubrum distributum group.
REFERENCE   1  (bases 1 to 3307369)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3307369)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJM00000000.1.
            The Halorubrum distributum JCM 9100 whole genome shotgun (WGS)
            project has the project accession NZ_AOJM00000000.  This version of
            the project (01) has the accession number NZ_AOJM01000000, and
            consists of sequences AOJM01000001-AOJM01000083.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337055.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,315
            CDSs (total)                      :: 3,249
            Genes (coding)                    :: 3,164
            CDSs (with protein)               :: 3,164
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 3, 11 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 11 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 36 of 85
            Pseudo Genes (incomplete)         :: 57 of 85
            Pseudo Genes (internal stop)      :: 13 of 85
            Pseudo Genes (multiple problems)  :: 18 of 85
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307369
                     /organism="Halorubrum distributum JCM 9100"
                     /mol_type="genomic DNA"
                     /strain="JCM 9100"
                     /culture_collection="JCM:9100"
                     /type_material="type strain of Halobacterium distributum"
                     /db_xref="taxon:1227467"
WGS         AOJM01000001-AOJM01000083
WGS_SCAFLD  NZ_AOJM01000001-NZ_AOJM01000083
//
LOCUS       NZ_AOLP01000000      3825973 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloferax denitrificans ATCC 35960, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLP00000000
VERSION     NZ_AOLP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471644
            Assembly: GCF_000337795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax denitrificans ATCC 35960
  ORGANISM  Haloferax denitrificans ATCC 35960
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3825973)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3825973)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLP00000000.1.
            The Haloferax denitrificans ATCC 35960 whole genome shotgun (WGS)
            project has the project accession NZ_AOLP00000000.  This version of
            the project (01) has the accession number NZ_AOLP01000000, and
            consists of sequences AOLP01000001-AOLP01000021.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Roche 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337795.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:41:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,875
            CDSs (total)                      :: 3,817
            Genes (coding)                    :: 3,749
            CDSs (with protein)               :: 3,749
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 38 of 68
            Pseudo Genes (incomplete)         :: 36 of 68
            Pseudo Genes (internal stop)      :: 8 of 68
            Pseudo Genes (multiple problems)  :: 12 of 68
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825973
                     /organism="Haloferax denitrificans ATCC 35960"
                     /mol_type="genomic DNA"
                     /strain="ATCC 35960"
                     /culture_collection="ATCC:35960"
                     /type_material="type strain of Haloferax denitrificans"
                     /db_xref="taxon:662478"
WGS         AOLP01000001-AOLP01000021
WGS_SCAFLD  NZ_AOLP01000001-NZ_AOLP01000021
//
LOCUS       NZ_AOJK01000000      3682872 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum californiense DSM 19288, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJK00000000
VERSION     NZ_AOJK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471648
            Assembly: GCF_000336875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum californiense DSM 19288
  ORGANISM  Halorubrum californiense DSM 19288
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3682872)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3682872)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJK00000000.1.
            The Halorubrum californiense DSM 19288 whole genome shotgun (WGS)
            project has the project accession NZ_AOJK00000000.  This version of
            the project (01) has the accession number NZ_AOJK01000000, and
            consists of sequences AOJK01000001-AOJK01000083.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336875.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:41:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,694
            CDSs (total)                      :: 3,641
            Genes (coding)                    :: 3,468
            CDSs (with protein)               :: 3,468
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 173
            CDSs (without protein)            :: 173
            Pseudo Genes (ambiguous residues) :: 0 of 173
            Pseudo Genes (frameshifted)       :: 64 of 173
            Pseudo Genes (incomplete)         :: 102 of 173
            Pseudo Genes (internal stop)      :: 37 of 173
            Pseudo Genes (multiple problems)  :: 27 of 173
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682872
                     /organism="Halorubrum californiense DSM 19288"
                     /mol_type="genomic DNA"
                     /strain="DSM 19288"
                     /culture_collection="DSM:19288"
                     /type_material="type strain of Halorubrum californiense"
                     /db_xref="taxon:1227465"
WGS         AOJK01000001-AOJK01000083
WGS_SCAFLD  NZ_AOJK01000001-NZ_AOJK01000083
//
LOCUS       NZ_AOIU01000000      4694889 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halosimplex carlsbadense 2-9-1 strain 2/9/2001, whole genome
            shotgun sequencing project.
ACCESSION   NZ_AOIU00000000
VERSION     NZ_AOIU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471654
            Assembly: GCF_000337455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosimplex carlsbadense 2-9-1
  ORGANISM  Halosimplex carlsbadense 2-9-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halosimplex.
REFERENCE   1  (bases 1 to 4694889)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4694889)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis,
            California 95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIU00000000.1.
            The Halosimplex carlsbadense 2-9-1 whole genome shotgun (WGS)
            project has the project accession NZ_AOIU00000000.  This version of
            the project (01) has the accession number NZ_AOIU01000000, and
            consists of sequences AOIU01000001-AOIU01000050.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337455.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:46:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,646
            CDSs (total)                      :: 4,587
            Genes (coding)                    :: 4,513
            CDSs (with protein)               :: 4,513
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 2, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2 (5S, 16S)
            partial rRNAs                     :: 7 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 22 of 74
            Pseudo Genes (incomplete)         :: 57 of 74
            Pseudo Genes (internal stop)      :: 12 of 74
            Pseudo Genes (multiple problems)  :: 13 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4694889
                     /organism="Halosimplex carlsbadense 2-9-1"
                     /mol_type="genomic DNA"
                     /strain="2/9/2001"
                     /culture_collection="JCM:11222"
                     /type_material="type strain of Halosimplex carlsbadense"
                     /db_xref="taxon:797114"
WGS         AOIU01000001-AOIU01000050
WGS_SCAFLD  NZ_AOIU01000001-NZ_AOIU01000050
//
LOCUS       NZ_AOLZ01000000      4338576 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronobacterium lacisalsi AJ5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLZ00000000
VERSION     NZ_AOLZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471659
            Assembly: GCF_000336655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronobacterium lacisalsi AJ5
  ORGANISM  Natronobacterium lacisalsi AJ5
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronobacterium.
REFERENCE   1  (bases 1 to 4338576)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4338576)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLZ00000000.1.
            The Natronobacterium lacisalsi AJ5 whole genome shotgun (WGS)
            project has the project accession NZ_AOLZ00000000.  This version of
            the project (01) has the accession number NZ_AOLZ01000000, and
            consists of sequences AOLZ01000001-AOLZ01000079.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336655.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,255
            CDSs (total)                      :: 4,194
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 2, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2, 6 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 42 of 103
            Pseudo Genes (incomplete)         :: 71 of 103
            Pseudo Genes (internal stop)      :: 18 of 103
            Pseudo Genes (multiple problems)  :: 26 of 103
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4338576
                     /organism="Natronobacterium lacisalsi AJ5"
                     /mol_type="genomic DNA"
                     /strain="AJ5"
                     /culture_collection="JCM:12983"
                     /type_material="type strain of Halobiforma lacisalsi"
                     /db_xref="taxon:358396"
WGS         AOLZ01000001-AOLZ01000079
WGS_SCAFLD  NZ_AOLZ01000001-NZ_AOLZ01000079
//
LOCUS       NZ_AOIL01000000      4635192 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrialba taiwanensis DSM 12281, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIL00000000
VERSION     NZ_AOIL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471680
            Assembly: GCF_000337595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba taiwanensis DSM 12281
  ORGANISM  Natrialba taiwanensis DSM 12281
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4635192)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4635192)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIL00000000.1.
            The Natrialba taiwanensis DSM 12281 whole genome shotgun (WGS)
            project has the project accession NZ_AOIL00000000.  This version of
            the project (01) has the accession number NZ_AOIL01000000, and
            consists of sequences AOIL01000001-AOIL01000070.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337595.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,521
            CDSs (total)                      :: 4,462
            Genes (coding)                    :: 4,254
            CDSs (with protein)               :: 4,254
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 1, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 208
            CDSs (without protein)            :: 208
            Pseudo Genes (ambiguous residues) :: 1 of 208
            Pseudo Genes (frameshifted)       :: 91 of 208
            Pseudo Genes (incomplete)         :: 141 of 208
            Pseudo Genes (internal stop)      :: 36 of 208
            Pseudo Genes (multiple problems)  :: 55 of 208
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4635192
                     /organism="Natrialba taiwanensis DSM 12281"
                     /mol_type="genomic DNA"
                     /strain="DSM 12281"
                     /culture_collection="DSM:12281"
                     /type_material="type strain of Natrialba taiwanensis"
                     /db_xref="taxon:1230458"
WGS         AOIL01000001-AOIL01000070
WGS_SCAFLD  NZ_AOIL01000001-NZ_AOIL01000070
//
LOCUS       NZ_AOLK01000000      3952136 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloferax elongans ATCC BAA-1513, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLK00000000
VERSION     NZ_AOLK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471641
            Assembly: GCF_000336755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax elongans ATCC BAA-1513
  ORGANISM  Haloferax elongans ATCC BAA-1513
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3952136)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3952136)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLK00000000.1.
            The Haloferax elongans ATCC BAA-1513 whole genome shotgun (WGS)
            project has the project accession NZ_AOLK00000000.  This version of
            the project (01) has the accession number NZ_AOLK01000000, and
            consists of sequences AOLK01000001-AOLK01000027.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336755.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,974
            CDSs (total)                      :: 3,912
            Genes (coding)                    :: 3,851
            CDSs (with protein)               :: 3,851
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 20 of 61
            Pseudo Genes (incomplete)         :: 45 of 61
            Pseudo Genes (internal stop)      :: 12 of 61
            Pseudo Genes (multiple problems)  :: 15 of 61
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3952136
                     /organism="Haloferax elongans ATCC BAA-1513"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-1513"
                     /culture_collection="ATCC:BAA-1513"
                     /type_material="type strain of Haloferax elongans"
                     /db_xref="taxon:1230453"
WGS         AOLK01000001-AOLK01000027
WGS_SCAFLD  NZ_AOLK01000001-NZ_AOLK01000027
//
LOCUS       NZ_AOIJ01000000      4023692 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema gari JCM 14663, whole genome shotgun sequencing project.
ACCESSION   NZ_AOIJ00000000
VERSION     NZ_AOIJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471627
            Assembly: GCF_000337175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema gari JCM 14663
  ORGANISM  Natrinema gari JCM 14663
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4023692)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4023692)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIJ00000000.1.
            The Natrinema gari JCM 14663 whole genome shotgun (WGS) project has
            the project accession NZ_AOIJ00000000.  This version of the project
            (01) has the accession number NZ_AOIJ01000000, and consists of
            sequences AOIJ01000001-AOIJ01000088.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337175.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,135
            CDSs (total)                      :: 4,064
            Genes (coding)                    :: 3,877
            CDSs (with protein)               :: 3,877
            Genes (RNA)                       :: 71
            rRNAs                             :: 3, 3, 12 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 12 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 187
            CDSs (without protein)            :: 187
            Pseudo Genes (ambiguous residues) :: 0 of 187
            Pseudo Genes (frameshifted)       :: 79 of 187
            Pseudo Genes (incomplete)         :: 127 of 187
            Pseudo Genes (internal stop)      :: 33 of 187
            Pseudo Genes (multiple problems)  :: 46 of 187
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4023692
                     /organism="Natrinema gari JCM 14663"
                     /mol_type="genomic DNA"
                     /strain="JCM 14663"
                     /culture_collection="JCM:14663"
                     /type_material="type strain of Natrinema gari"
                     /db_xref="taxon:1230459"
WGS         AOIJ01000001-AOIJ01000088
WGS_SCAFLD  NZ_AOIJ01000001-NZ_AOIJ01000088
//
LOCUS       NZ_AOMB01000000      3419074 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halococcus hamelinensis 100A6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOMB00000000
VERSION     NZ_AOMB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471661
            Assembly: GCF_000336675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus hamelinensis 100A6
  ORGANISM  Halococcus hamelinensis 100A6
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 3419074)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3419074)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOMB00000000.1.
            The Halococcus hamelinensis 100A6 whole genome shotgun (WGS)
            project has the project accession NZ_AOMB00000000.  This version of
            the project (01) has the accession number NZ_AOMB01000000, and
            consists of sequences AOMB01000001-AOMB01000046.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336675.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,523
            CDSs (total)                      :: 3,471
            Genes (coding)                    :: 3,411
            CDSs (with protein)               :: 3,411
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 18 of 60
            Pseudo Genes (incomplete)         :: 42 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 7 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3419074
                     /organism="Halococcus hamelinensis 100A6"
                     /mol_type="genomic DNA"
                     /strain="100A6"
                     /culture_collection="JCM:12892"
                     /type_material="type strain of Halococcus hamelinensis"
                     /db_xref="taxon:1132509"
WGS         AOMB01000001-AOMB01000046
WGS_SCAFLD  NZ_AOMB01000001-NZ_AOMB01000046
//
LOCUS       NZ_AOMD01000000      3449700 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halococcus saccharolyticus DSM 5350, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AOMD00000000
VERSION     NZ_AOMD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471639
            Assembly: GCF_000336915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus saccharolyticus DSM 5350
  ORGANISM  Halococcus saccharolyticus DSM 5350
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 3449700)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449700)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOMD00000000.1.
            The Halococcus saccharolyticus DSM 5350 whole genome shotgun (WGS)
            project has the project accession NZ_AOMD00000000.  This version of
            the project (01) has the accession number NZ_AOMD01000000, and
            consists of sequences AOMD01000001-AOMD01000036.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336915.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:42:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,564
            CDSs (total)                      :: 3,510
            Genes (coding)                    :: 3,424
            CDSs (with protein)               :: 3,424
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 27 of 86
            Pseudo Genes (incomplete)         :: 64 of 86
            Pseudo Genes (internal stop)      :: 10 of 86
            Pseudo Genes (multiple problems)  :: 13 of 86
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449700
                     /organism="Halococcus saccharolyticus DSM 5350"
                     /mol_type="genomic DNA"
                     /strain="DSM 5350"
                     /culture_collection="DSM:5350"
                     /type_material="type strain of Halococcus saccharolyticus"
                     /db_xref="taxon:1227455"
WGS         AOMD01000001-AOMD01000036
WGS_SCAFLD  NZ_AOMD01000001-NZ_AOMD01000036
//
LOCUS       NZ_AOHY01000000      4111275 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronorubrum bangense JCM 10635, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOHY00000000
VERSION     NZ_AOHY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471622
            Assembly: GCF_000337715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum bangense JCM 10635
  ORGANISM  Natronorubrum bangense JCM 10635
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4111275)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4111275)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOHY00000000.1.
            The Natronorubrum bangense JCM 10635 whole genome shotgun (WGS)
            project has the project accession NZ_AOHY00000000.  This version of
            the project (01) has the accession number NZ_AOHY01000000, and
            consists of sequences AOHY01000001-AOHY01000062.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337715.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,091
            CDSs (total)                      :: 4,031
            Genes (coding)                    :: 3,890
            CDSs (with protein)               :: 3,890
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 67 of 141
            Pseudo Genes (incomplete)         :: 87 of 141
            Pseudo Genes (internal stop)      :: 14 of 141
            Pseudo Genes (multiple problems)  :: 22 of 141
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111275
                     /organism="Natronorubrum bangense JCM 10635"
                     /mol_type="genomic DNA"
                     /strain="JCM 10635"
                     /culture_collection="JCM:10635"
                     /type_material="type strain of Natronorubrum bangense"
                     /db_xref="taxon:1227500"
WGS         AOHY01000001-AOHY01000062
WGS_SCAFLD  NZ_AOHY01000001-NZ_AOHY01000062
//
LOCUS       NZ_AOLM01000000      3812428 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloferax sulfurifontis ATCC BAA-897, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AOLM00000000
VERSION     NZ_AOLM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471686
            Assembly: GCF_000337835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sulfurifontis ATCC BAA-897
  ORGANISM  Haloferax sulfurifontis ATCC BAA-897
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3812428)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812428)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLM00000000.1.
            The Haloferax sulfurifontis ATCC BAA-897 whole genome shotgun (WGS)
            project has the project accession NZ_AOLM00000000.  This version of
            the project (01) has the accession number NZ_AOLM01000000, and
            consists of sequences AOLM01000001-AOLM01000029.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Roche 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337835.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:49:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,927
            CDSs (total)                      :: 3,869
            Genes (coding)                    :: 3,777
            CDSs (with protein)               :: 3,777
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 45 of 92
            Pseudo Genes (incomplete)         :: 44 of 92
            Pseudo Genes (internal stop)      :: 21 of 92
            Pseudo Genes (multiple problems)  :: 14 of 92
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812428
                     /organism="Haloferax sulfurifontis ATCC BAA-897"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-897"
                     /culture_collection="ATCC:BAA-897"
                     /type_material="type strain of Haloferax sulfurifontis"
                     /db_xref="taxon:662480"
WGS         AOLM01000001-AOLM01000029
WGS_SCAFLD  NZ_AOLM01000001-NZ_AOLM01000029
//
LOCUS       NZ_AOHT01000000      3928510 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halogeometricum borinquense DSM 11551, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AOHT00000000
VERSION     NZ_AOHT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471667
            Assembly: GCF_000337855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum borinquense DSM 11551
  ORGANISM  Halogeometricum borinquense DSM 11551
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1  (bases 1 to 3928510)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3928510)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOHT00000000.1.
            The Halogeometricum borinquense DSM 11551 whole genome shotgun
            (WGS) project has the project accession NZ_AOHT00000000.  This
            version of the project (01) has the accession number
            NZ_AOHT01000000, and consists of sequences
            AOHT01000001-AOHT01000056.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIx; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337855.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:46:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,956
            CDSs (total)                      :: 3,892
            Genes (coding)                    :: 3,811
            CDSs (with protein)               :: 3,811
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 4 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 27 of 81
            Pseudo Genes (incomplete)         :: 58 of 81
            Pseudo Genes (internal stop)      :: 10 of 81
            Pseudo Genes (multiple problems)  :: 12 of 81
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928510
                     /organism="Halogeometricum borinquense DSM 11551"
                     /mol_type="genomic DNA"
                     /strain="DSM 11551"
                     /culture_collection="DSM:11551"
                     /type_material="type strain of Halogeometricum
                     borinquense"
                     /db_xref="taxon:469382"
WGS         AOHT01000001-AOHT01000056
WGS_SCAFLD  NZ_AOHT01000001-NZ_AOHT01000056
//
LOCUS       NZ_AOHZ01000000      4588634 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronolimnohabitans innermongolicus JCM 12255, whole genome
            shotgun sequencing project.
ACCESSION   NZ_AOHZ00000000
VERSION     NZ_AOHZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471623
            Assembly: GCF_000337215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronolimnohabitans innermongolicus JCM 12255
  ORGANISM  Natronolimnohabitans innermongolicus JCM 12255
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronolimnohabitans.
REFERENCE   1  (bases 1 to 4588634)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4588634)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOHZ00000000.1.
            The Natronolimnohabitans innermongolicus JCM 12255 whole genome
            shotgun (WGS) project has the project accession NZ_AOHZ00000000.
            This version of the project (01) has the accession number
            NZ_AOHZ01000000, and consists of sequences
            AOHZ01000001-AOHZ01000121.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337215.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,520
            CDSs (total)                      :: 4,461
            Genes (coding)                    :: 4,332
            CDSs (with protein)               :: 4,332
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 1, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 6 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 41 of 129
            Pseudo Genes (incomplete)         :: 106 of 129
            Pseudo Genes (internal stop)      :: 13 of 129
            Pseudo Genes (multiple problems)  :: 26 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4588634
                     /organism="Natronolimnohabitans innermongolicus JCM 12255"
                     /mol_type="genomic DNA"
                     /strain="JCM 12255"
                     /culture_collection="JCM:12255"
                     /type_material="type strain of Natronolimnobius
                     innermongolicus"
                     /db_xref="taxon:1227499"
WGS         AOHZ01000001-AOHZ01000121
WGS_SCAFLD  NZ_AOHZ01000001-NZ_AOHZ01000121
//
LOCUS       NZ_AOIV01000000      4384515 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halogeometricum pallidum JCM 14848, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIV00000000
VERSION     NZ_AOIV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471630
            Assembly: GCF_000337095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum pallidum JCM 14848
  ORGANISM  Halogeometricum pallidum JCM 14848
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1  (bases 1 to 4384515)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4384515)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIV00000000.1.
            The Halogeometricum pallidum JCM 14848 whole genome shotgun (WGS)
            project has the project accession NZ_AOIV00000000.  This version of
            the project (01) has the accession number NZ_AOIV01000000, and
            consists of sequences AOIV01000001-AOIV01000045.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337095.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:47:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,403
            CDSs (total)                      :: 4,345
            Genes (coding)                    :: 4,231
            CDSs (with protein)               :: 4,231
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 46 of 114
            Pseudo Genes (incomplete)         :: 80 of 114
            Pseudo Genes (internal stop)      :: 15 of 114
            Pseudo Genes (multiple problems)  :: 25 of 114
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4384515
                     /organism="Halogeometricum pallidum JCM 14848"
                     /mol_type="genomic DNA"
                     /strain="JCM 14848"
                     /culture_collection="JCM:14848"
                     /type_material="type strain of Halogeometricum pallidum"
                     /db_xref="taxon:1227487"
WGS         AOIV01000001-AOIV01000045
WGS_SCAFLD  NZ_AOIV01000001-NZ_AOIV01000045
//
LOCUS       NZ_AOIS01000000      4841607 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloterrigena salina JCM 13891, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIS00000000
VERSION     NZ_AOIS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471629
            Assembly: GCF_000337495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloterrigena salina JCM 13891
  ORGANISM  Haloterrigena salina JCM 13891
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Haloterrigena.
REFERENCE   1  (bases 1 to 4841607)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4841607)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIS00000000.1.
            The Haloterrigena salina JCM 13891 whole genome shotgun (WGS)
            project has the project accession NZ_AOIS00000000.  This version of
            the project (01) has the accession number NZ_AOIS01000000, and
            consists of sequences AOIS01000001-AOIS01000071.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337495.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:48:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,665
            CDSs (total)                      :: 4,599
            Genes (coding)                    :: 4,450
            CDSs (with protein)               :: 4,450
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 5 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 70 of 149
            Pseudo Genes (incomplete)         :: 90 of 149
            Pseudo Genes (internal stop)      :: 23 of 149
            Pseudo Genes (multiple problems)  :: 28 of 149
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4841607
                     /organism="Haloterrigena salina JCM 13891"
                     /mol_type="genomic DNA"
                     /strain="JCM 13891"
                     /culture_collection="JCM:13891"
                     /type_material="type strain of Haloterrigena salina"
                     /db_xref="taxon:1227488"
WGS         AOIS01000001-AOIS01000071
WGS_SCAFLD  NZ_AOIS01000001-NZ_AOIS01000071
//
LOCUS       NZ_BAFM01000000      3476728 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halococcus agarilyticus strain 197A, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAFM00000000
VERSION     NZ_BAFM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00011631
            Sequence Read Archive: DRR002163
            Assembly: GCF_000334895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus agarilyticus
  ORGANISM  Halococcus agarilyticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1
  AUTHORS   Shimane,Y., Minegishi,H., Echigo,A., Nishi,S., Ohta,Y., Usami,R.,
            Maruyama,T. and Hatada,Y.
  TITLE     Whole genome sequencing of Halococcus sp. 197A
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3476728)
  AUTHORS   Shimane,Y., Minegishi,H., Echigo,A., Nishi,S., Ohta,Y., Usami,R.,
            Maruyama,T. and Hatada,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2012) Contact:Shinro Nishi Japan Agency for
            Marine-Earth Science and Technology (JAMSTEC); Natsushima-Cho 2-15,
            Yokosuka, Kanagawa 237-0061, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAFM00000000.1.
            The Halococcus agarilyticus whole genome shotgun (WGS) project has
            the project accession NZ_BAFM00000000.  This version of the project
            (01) has the accession number NZ_BAFM01000000, and consists of
            sequences BAFM01000001-BAFM01000058.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: GS De Novo Assembler v. 2.3
            Genome Coverage       :: 20x
            Sequencing Technology :: 454 GS FLX Titanium
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000334895.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:46:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,513
            CDSs (total)                      :: 3,462
            Genes (coding)                    :: 3,378
            CDSs (with protein)               :: 3,378
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 28 of 84
            Pseudo Genes (incomplete)         :: 63 of 84
            Pseudo Genes (internal stop)      :: 11 of 84
            Pseudo Genes (multiple problems)  :: 16 of 84
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3476728
                     /organism="Halococcus agarilyticus"
                     /mol_type="genomic DNA"
                     /strain="197A"
                     /db_xref="taxon:1232219"
WGS         BAFM01000001-BAFM01000058
WGS_SCAFLD  NZ_BAFM01000001-NZ_BAFM01000058
//
LOCUS       NZ_AOIB01000000      4416525 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronococcus amylolyticus DSM 10524, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AOIB00000000
VERSION     NZ_AOIB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471669
            Assembly: GCF_000337675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronococcus amylolyticus DSM 10524
  ORGANISM  Natronococcus amylolyticus DSM 10524
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 4416525)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4416525)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIB00000000.1.
            The Natronococcus amylolyticus DSM 10524 whole genome shotgun (WGS)
            project has the project accession NZ_AOIB00000000.  This version of
            the project (01) has the accession number NZ_AOIB01000000, and
            consists of sequences AOIB01000001-AOIB01000044.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337675.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:44:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,476
            CDSs (total)                      :: 4,418
            Genes (coding)                    :: 4,299
            CDSs (with protein)               :: 4,299
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 48 of 119
            Pseudo Genes (incomplete)         :: 75 of 119
            Pseudo Genes (internal stop)      :: 23 of 119
            Pseudo Genes (multiple problems)  :: 25 of 119
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4416525
                     /organism="Natronococcus amylolyticus DSM 10524"
                     /mol_type="genomic DNA"
                     /strain="DSM 10524"
                     /culture_collection="DSM:10524"
                     /type_material="type strain of Natronococcus amylolyticus"
                     /db_xref="taxon:1227497"
WGS         AOIB01000001-AOIB01000044
WGS_SCAFLD  NZ_AOIB01000001-NZ_AOIB01000044
//
LOCUS       NZ_AOLE01000000      3598205 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloferax sp. ATCC BAA-645, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLE00000000
VERSION     NZ_AOLE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471635
            Assembly: GCF_000336835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. ATCC BAA-645
  ORGANISM  Haloferax sp. ATCC BAA-645
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3598205)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3598205)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLE00000000.1.
            The Haloferax sp. ATCC BAA-645 whole genome shotgun (WGS) project
            has the project accession NZ_AOLE00000000.  This version of the
            project (01) has the accession number NZ_AOLE01000000, and consists
            of sequences AOLE01000001-AOLE01000041.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336835.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,682
            CDSs (total)                      :: 3,620
            Genes (coding)                    :: 3,566
            CDSs (with protein)               :: 3,566
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 24 of 54
            Pseudo Genes (incomplete)         :: 34 of 54
            Pseudo Genes (internal stop)      :: 1 of 54
            Pseudo Genes (multiple problems)  :: 5 of 54
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598205
                     /organism="Haloferax sp. ATCC BAA-645"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-645"
                     /culture_collection="ATCC:BAA-645"
                     /db_xref="taxon:1227463"
WGS         AOLE01000001-AOLE01000041
WGS_SCAFLD  NZ_AOLE01000001-NZ_AOLE01000041
//
LOCUS       NZ_AOJH01000000      3619738 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum kocurii JCM 14978, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJH00000000
VERSION     NZ_AOJH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471633
            Assembly: GCF_000337355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum kocurii JCM 14978
  ORGANISM  Halorubrum kocurii JCM 14978
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3619738)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3619738)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJH00000000.1.
            The Halorubrum kocurii JCM 14978 whole genome shotgun (WGS) project
            has the project accession NZ_AOJH00000000.  This version of the
            project (01) has the accession number NZ_AOJH01000000, and consists
            of sequences AOJH01000001-AOJH01000105.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337355.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:50:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,625
            CDSs (total)                      :: 3,571
            Genes (coding)                    :: 3,443
            CDSs (with protein)               :: 3,443
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 43 of 128
            Pseudo Genes (incomplete)         :: 90 of 128
            Pseudo Genes (internal stop)      :: 16 of 128
            Pseudo Genes (multiple problems)  :: 17 of 128
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619738
                     /organism="Halorubrum kocurii JCM 14978"
                     /mol_type="genomic DNA"
                     /strain="JCM 14978"
                     /culture_collection="JCM:14978"
                     /type_material="type strain of Halorubrum kocurii"
                     /db_xref="taxon:1230456"
WGS         AOJH01000001-AOJH01000105
WGS_SCAFLD  NZ_AOJH01000001-NZ_AOJH01000105
//
LOCUS       NZ_AOLF01000000      3587033 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloferax sp. ATCC BAA-644, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLF00000000
VERSION     NZ_AOLF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471677
            Assembly: GCF_000336975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. ATCC BAA-644
  ORGANISM  Haloferax sp. ATCC BAA-644
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3587033)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3587033)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLF00000000.1.
            The Haloferax sp. ATCC BAA-644 whole genome shotgun (WGS) project
            has the project accession NZ_AOLF00000000.  This version of the
            project (01) has the accession number NZ_AOLF01000000, and consists
            of sequences AOLF01000001-AOLF01000038.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336975.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,658
            CDSs (total)                      :: 3,596
            Genes (coding)                    :: 3,531
            CDSs (with protein)               :: 3,531
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 31 of 65
            Pseudo Genes (incomplete)         :: 35 of 65
            Pseudo Genes (internal stop)      :: 4 of 65
            Pseudo Genes (multiple problems)  :: 5 of 65
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3587033
                     /organism="Haloferax sp. ATCC BAA-644"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-644"
                     /culture_collection="ATCC:BAA-644"
                     /db_xref="taxon:1227462"
WGS         AOLF01000001-AOLF01000038
WGS_SCAFLD  NZ_AOLF01000001-NZ_AOLF01000038
//
LOCUS       NZ_AOIA01000000      4496185 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronococcus jeotgali DSM 18795, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIA00000000
VERSION     NZ_AOIA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471624
            Assembly: GCF_000337695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronococcus jeotgali DSM 18795
  ORGANISM  Natronococcus jeotgali DSM 18795
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 4496185)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4496185)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIA00000000.1.
            The Natronococcus jeotgali DSM 18795 whole genome shotgun (WGS)
            project has the project accession NZ_AOIA00000000.  This version of
            the project (01) has the accession number NZ_AOIA01000000, and
            consists of sequences AOIA01000001-AOIA01000170.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337695.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,611
            CDSs (total)                      :: 4,547
            Genes (coding)                    :: 4,322
            CDSs (with protein)               :: 4,322
            Genes (RNA)                       :: 64
            rRNAs                             :: 4, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 225
            CDSs (without protein)            :: 225
            Pseudo Genes (ambiguous residues) :: 1 of 225
            Pseudo Genes (frameshifted)       :: 87 of 225
            Pseudo Genes (incomplete)         :: 157 of 225
            Pseudo Genes (internal stop)      :: 46 of 225
            Pseudo Genes (multiple problems)  :: 58 of 225
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4496185
                     /organism="Natronococcus jeotgali DSM 18795"
                     /mol_type="genomic DNA"
                     /strain="DSM 18795"
                     /culture_collection="DSM:18795"
                     /type_material="type strain of Natronococcus jeotgali"
                     /db_xref="taxon:1227498"
WGS         AOIA01000001-AOIA01000170
WGS_SCAFLD  NZ_AOIA01000001-NZ_AOIA01000170
//
LOCUS       NZ_AOIK01000000      3774970 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema altunense JCM 12890, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIK00000000
VERSION     NZ_AOIK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471672
            Assembly: GCF_000337155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema altunense JCM 12890
  ORGANISM  Natrinema altunense JCM 12890
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3774970)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3774970)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIK00000000.1.
            The Natrinema altunense JCM 12890 whole genome shotgun (WGS)
            project has the project accession NZ_AOIK00000000.  This version of
            the project (01) has the accession number NZ_AOIK01000000, and
            consists of sequences AOIK01000001-AOIK01000052.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337155.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:43:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,840
            CDSs (total)                      :: 3,777
            Genes (coding)                    :: 3,675
            CDSs (with protein)               :: 3,675
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 4 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 39 of 102
            Pseudo Genes (incomplete)         :: 72 of 102
            Pseudo Genes (internal stop)      :: 18 of 102
            Pseudo Genes (multiple problems)  :: 26 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774970
                     /organism="Natrinema altunense JCM 12890"
                     /mol_type="genomic DNA"
                     /strain="JCM 12890"
                     /culture_collection="JCM:12890"
                     /type_material="type strain of Natrinema altunense"
                     /db_xref="taxon:1227494"
WGS         AOIK01000001-AOIK01000052
WGS_SCAFLD  NZ_AOIK01000001-NZ_AOIK01000052
//
LOCUS       NZ_AOIN01000000      4309274 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrialba chahannaoensis JCM 10990, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIN00000000
VERSION     NZ_AOIN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471674
            Assembly: GCF_000337135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba chahannaoensis JCM 10990
  ORGANISM  Natrialba chahannaoensis JCM 10990
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4309274)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309274)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIN00000000.1.
            The Natrialba chahannaoensis JCM 10990 whole genome shotgun (WGS)
            project has the project accession NZ_AOIN00000000.  This version of
            the project (01) has the accession number NZ_AOIN01000000, and
            consists of sequences AOIN01000001-AOIN01000106.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337135.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:46:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,165
            CDSs (total)                      :: 4,108
            Genes (coding)                    :: 3,926
            CDSs (with protein)               :: 3,926
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 92 of 182
            Pseudo Genes (incomplete)         :: 123 of 182
            Pseudo Genes (internal stop)      :: 31 of 182
            Pseudo Genes (multiple problems)  :: 55 of 182
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309274
                     /organism="Natrialba chahannaoensis JCM 10990"
                     /mol_type="genomic DNA"
                     /strain="JCM 10990"
                     /culture_collection="JCM:10990"
                     /type_material="type strain of Natrialba chahannaoensis"
                     /db_xref="taxon:1227492"
WGS         AOIN01000001-AOIN01000106
WGS_SCAFLD  NZ_AOIN01000001-NZ_AOIN01000106
//
LOCUS       NZ_AOLR01000000      4405164 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Haloarcula marismortui ATCC 33800, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLR00000000
VERSION     NZ_AOLR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471645
            Assembly: GCF_000337275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula marismortui ATCC 33800 (Haloarcula sinaiiensis ATCC
            33800)
  ORGANISM  Haloarcula marismortui ATCC 33800
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4405164)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4405164)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLR00000000.1.
            The Haloarcula marismortui ATCC 33800 whole genome shotgun (WGS)
            project has the project accession NZ_AOLR00000000.  This version of
            the project (01) has the accession number NZ_AOLR01000000, and
            consists of sequences AOLR01000001-AOLR01000084.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Roche 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337275.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:46:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,527
            CDSs (total)                      :: 4,471
            Genes (coding)                    :: 4,347
            CDSs (with protein)               :: 4,347
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 35 of 124
            Pseudo Genes (incomplete)         :: 96 of 124
            Pseudo Genes (internal stop)      :: 21 of 124
            Pseudo Genes (multiple problems)  :: 24 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4405164
                     /organism="Haloarcula marismortui ATCC 33800"
                     /mol_type="genomic DNA"
                     /strain="ATCC 33800"
                     /culture_collection="ATCC:33800"
                     /type_material="type strain of Haloarcula sinaiiensis"
                     /db_xref="taxon:662476"
WGS         AOLR01000001-AOLR01000084
WGS_SCAFLD  NZ_AOLR01000001-NZ_AOLR01000084
//
LOCUS       NZ_AOIT01000000      3522035 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema limicola JCM 13563, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIT00000000
VERSION     NZ_AOIT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471681
            Assembly: GCF_000337475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema limicola JCM 13563
  ORGANISM  Natrinema limicola JCM 13563
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3522035)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3522035)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIT00000000.1.
            The Natrinema limicola JCM 13563 whole genome shotgun (WGS) project
            has the project accession NZ_AOIT00000000.  This version of the
            project (01) has the accession number NZ_AOIT01000000, and consists
            of sequences AOIT01000001-AOIT01000094.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337475.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:46:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,636
            CDSs (total)                      :: 3,567
            Genes (coding)                    :: 3,425
            CDSs (with protein)               :: 3,425
            Genes (RNA)                       :: 69
            rRNAs                             :: 4, 4, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 4, 9 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 142
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 1 of 142
            Pseudo Genes (frameshifted)       :: 59 of 142
            Pseudo Genes (incomplete)         :: 93 of 142
            Pseudo Genes (internal stop)      :: 14 of 142
            Pseudo Genes (multiple problems)  :: 21 of 142
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3522035
                     /organism="Natrinema limicola JCM 13563"
                     /mol_type="genomic DNA"
                     /strain="JCM 13563"
                     /culture_collection="JCM:13563"
                     /type_material="type strain of Haloterrigena limicola"
                     /db_xref="taxon:1230457"
WGS         AOIT01000001-AOIT01000094
WGS_SCAFLD  NZ_AOIT01000001-NZ_AOIT01000094
//
LOCUS       NZ_AOIM01000000      4159606 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrialba hulunbeirensis JCM 10989, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIM00000000
VERSION     NZ_AOIM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471673
            Assembly: GCF_000337575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba hulunbeirensis JCM 10989
  ORGANISM  Natrialba hulunbeirensis JCM 10989
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4159606)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4159606)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIM00000000.1.
            The Natrialba hulunbeirensis JCM 10989 whole genome shotgun (WGS)
            project has the project accession NZ_AOIM00000000.  This version of
            the project (01) has the accession number NZ_AOIM01000000, and
            consists of sequences AOIM01000001-AOIM01000048.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337575.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:47:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,968
            CDSs (total)                      :: 3,907
            Genes (coding)                    :: 3,812
            CDSs (with protein)               :: 3,812
            Genes (RNA)                       :: 61
            rRNAs                             :: 5, 1, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2, 5 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 42 of 95
            Pseudo Genes (incomplete)         :: 61 of 95
            Pseudo Genes (internal stop)      :: 17 of 95
            Pseudo Genes (multiple problems)  :: 18 of 95
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4159606
                     /organism="Natrialba hulunbeirensis JCM 10989"
                     /mol_type="genomic DNA"
                     /strain="JCM 10989"
                     /culture_collection="JCM:10989"
                     /type_material="type strain of Natrialba hulunbeirensis"
                     /db_xref="taxon:1227493"
WGS         AOIM01000001-AOIM01000048
WGS_SCAFLD  NZ_AOIM01000001-NZ_AOIM01000048
//
LOCUS       NZ_AOII01000000      3915814 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema pallidum DSM 3751, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOII00000000
VERSION     NZ_AOII00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471671
            Assembly: GCF_000337615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema pallidum DSM 3751
  ORGANISM  Natrinema pallidum DSM 3751
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3915814)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3915814)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOII00000000.1.
            The Natrinema pallidum DSM 3751 whole genome shotgun (WGS) project
            has the project accession NZ_AOII00000000.  This version of the
            project (01) has the accession number NZ_AOII01000000, and consists
            of sequences AOII01000001-AOII01000115.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337615.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:46:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,983
            CDSs (total)                      :: 3,921
            Genes (coding)                    :: 3,725
            CDSs (with protein)               :: 3,725
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 196
            CDSs (without protein)            :: 196
            Pseudo Genes (ambiguous residues) :: 0 of 196
            Pseudo Genes (frameshifted)       :: 72 of 196
            Pseudo Genes (incomplete)         :: 138 of 196
            Pseudo Genes (internal stop)      :: 23 of 196
            Pseudo Genes (multiple problems)  :: 34 of 196
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3915814
                     /organism="Natrinema pallidum DSM 3751"
                     /mol_type="genomic DNA"
                     /strain="DSM 3751"
                     /culture_collection="DSM:3751"
                     /type_material="type strain of Natrinema pallidum"
                     /db_xref="taxon:1227495"
WGS         AOII01000001-AOII01000115
WGS_SCAFLD  NZ_AOII01000001-NZ_AOII01000115
//
LOCUS       NZ_AOIO01000000      4404175 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrialba asiatica DSM 12278, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIO00000000
VERSION     NZ_AOIO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471653
            Assembly: GCF_000337555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba asiatica DSM 12278
  ORGANISM  Natrialba asiatica DSM 12278
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4404175)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4404175)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIO00000000.1.
            The Natrialba asiatica DSM 12278 whole genome shotgun (WGS) project
            has the project accession NZ_AOIO00000000.  This version of the
            project (01) has the accession number NZ_AOIO01000000, and consists
            of sequences AOIO01000001-AOIO01000049.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337555.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:47:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,292
            CDSs (total)                      :: 4,233
            Genes (coding)                    :: 4,113
            CDSs (with protein)               :: 4,113
            Genes (RNA)                       :: 59
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 62 of 120
            Pseudo Genes (incomplete)         :: 86 of 120
            Pseudo Genes (internal stop)      :: 22 of 120
            Pseudo Genes (multiple problems)  :: 41 of 120
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4404175
                     /organism="Natrialba asiatica DSM 12278"
                     /mol_type="genomic DNA"
                     /strain="DSM 12278"
                     /culture_collection="DSM:12278"
                     /type_material="type strain of Natrialba asiatica"
                     /db_xref="taxon:29540"
WGS         AOIO01000001-AOIO01000049
WGS_SCAFLD  NZ_AOIO01000001-NZ_AOIO01000049
//
LOCUS       NZ_AOHX01000000      3460288 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronorubrum sulfidifaciens JCM 14089, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AOHX00000000
VERSION     NZ_AOHX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471621
            Assembly: GCF_000337735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum sulfidifaciens JCM 14089
  ORGANISM  Natronorubrum sulfidifaciens JCM 14089
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 3460288)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3460288)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOHX00000000.1.
            The Natronorubrum sulfidifaciens JCM 14089 whole genome shotgun
            (WGS) project has the project accession NZ_AOHX00000000.  This
            version of the project (01) has the accession number
            NZ_AOHX01000000, and consists of sequences
            AOHX01000001-AOHX01000063.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337735.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,498
            CDSs (total)                      :: 3,443
            Genes (coding)                    :: 3,375
            CDSs (with protein)               :: 3,375
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 21 of 68
            Pseudo Genes (incomplete)         :: 48 of 68
            Pseudo Genes (internal stop)      :: 7 of 68
            Pseudo Genes (multiple problems)  :: 8 of 68
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3460288
                     /organism="Natronorubrum sulfidifaciens JCM 14089"
                     /mol_type="genomic DNA"
                     /strain="JCM 14089"
                     /culture_collection="JCM:14089"
                     /type_material="type strain of Natronorubrum
                     sulfidifaciens"
                     /db_xref="taxon:1230460"
WGS         AOHX01000001-AOHX01000063
WGS_SCAFLD  NZ_AOHX01000001-NZ_AOHX01000063
//
LOCUS       NZ_ASGZ01000000      3675087 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Candidatus Halobonum tyrrellensis G22, whole genome shotgun
            sequencing project.
ACCESSION   NZ_ASGZ00000000
VERSION     NZ_ASGZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471691
            Assembly: GCF_000495475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Halobonum tyrrellensis G22
  ORGANISM  Candidatus Halobonum tyrrellensis G22
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Candidatus
            Halobonum.
REFERENCE   1  (bases 1 to 3675087)
  AUTHORS   Ugalde,J.A., Narasingarao,P., Kuo,S., Podell,S. and Allen,E.E.
  TITLE     Draft Genome Sequence of 'Candidatus Halobonum tyrrellensis' Strain
            G22, Isolated from the Hypersaline Waters of Lake Tyrrell,
            Australia
  JOURNAL   Genome Announc 1 (6), e01001-13 (2013)
   PUBMED   24336364
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3675087)
  AUTHORS   Ugalde,J.A., Narasingarao,P., Podell,S. and Allen,E.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2013) Scripps Instititution of Oceanography,
            University of California, San Diego, 9500 Gilman Drive, La Jolla,
            CA 92093, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ASGZ00000000.1.
            The Candidatus Halobonum tyrrellensis G22 whole genome shotgun
            (WGS) project has the project accession NZ_ASGZ00000000.  This
            version of the project (01) has the accession number
            NZ_ASGZ01000000, and consists of sequences
            ASGZ01000001-ASGZ01000072.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            Source DNA available from Eric E. Allen, Marine Biology Research
            Division, Scripps Institution of Oceanography, University of
            California at San Diego, La Jolla, CA 92093-0202, USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.7
            Assembly Name         :: Htyrrel1.0
            Genome Coverage       :: 70.0x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000495475.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:08:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,617
            CDSs (total)                      :: 3,565
            Genes (coding)                    :: 3,483
            CDSs (with protein)               :: 3,483
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 22 of 82
            Pseudo Genes (incomplete)         :: 70 of 82
            Pseudo Genes (internal stop)      :: 6 of 82
            Pseudo Genes (multiple problems)  :: 13 of 82
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3675087
                     /organism="Candidatus Halobonum tyrrellensis G22"
                     /mol_type="genomic DNA"
                     /strain="G22"
                     /isolation_source="hypersaline waters of Lake Tyrrell"
                     /type_material="reference material of Candidatus Halobonum
                     tyrrellensis"
                     /db_xref="taxon:1324957"
                     /geo_loc_name="Australia"
                     /collection_date="2007-08"
WGS         ASGZ01000001-ASGZ01000072
WGS_SCAFLD  NZ_ASGZ01000001-NZ_ASGZ01000072
//
LOCUS       NZ_AELP01000000      1713264 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS146D, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELP00000000
VERSION     NZ_AELP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436666
            Assembly: GCF_000189895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS146D
  ORGANISM  Methanobrevibacter smithii TS146D
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1713264)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1713264)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELP00000000.1.
            The Methanobrevibacter smithii TS146D whole genome shotgun (WGS)
            project has the project accession NZ_AELP00000000.  This version of
            the project (01) has the accession number NZ_AELP01000000, and
            consists of sequences AELP01000001-AELP01000033.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 208x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000189895.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:30:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,688
            CDSs (total)                      :: 1,649
            Genes (coding)                    :: 1,556
            CDSs (with protein)               :: 1,556
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 69 of 93
            Pseudo Genes (incomplete)         :: 21 of 93
            Pseudo Genes (internal stop)      :: 4 of 93
            Pseudo Genes (multiple problems)  :: 1 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713264
                     /organism="Methanobrevibacter smithii TS146D"
                     /mol_type="genomic DNA"
                     /strain="TS146D"
                     /db_xref="taxon:911121"
WGS         AELP01000001-AELP01000033
WGS_SCAFLD  NZ_AELP01000001-NZ_AELP01000033
//
LOCUS       NZ_AELY01000000      1972498 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS95B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELY00000000
VERSION     NZ_AELY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436677
            Assembly: GCF_000190075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS95B
  ORGANISM  Methanobrevibacter smithii TS95B
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1972498)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1972498)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELY00000000.1.
            The Methanobrevibacter smithii TS95B whole genome shotgun (WGS)
            project has the project accession NZ_AELY00000000.  This version of
            the project (01) has the accession number NZ_AELY01000000, and
            consists of sequences AELY01000001-AELY01000044.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 80x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000190075.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:30:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,887
            CDSs (total)                      :: 1,849
            Genes (coding)                    :: 1,738
            CDSs (with protein)               :: 1,738
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 94 of 111
            Pseudo Genes (incomplete)         :: 19 of 111
            Pseudo Genes (internal stop)      :: 3 of 111
            Pseudo Genes (multiple problems)  :: 4 of 111
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972498
                     /organism="Methanobrevibacter smithii TS95B"
                     /mol_type="genomic DNA"
                     /strain="TS95B"
                     /db_xref="taxon:911130"
WGS         AELY01000001-AELY01000044
WGS_SCAFLD  NZ_AELY01000001-NZ_AELY01000044
//
LOCUS       NZ_AELS01000000      1965064 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS147B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELS00000000
VERSION     NZ_AELS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436668
            Assembly: GCF_000189955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147B
  ORGANISM  Methanobrevibacter smithii TS147B
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1965064)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1965064)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELS00000000.1.
            The Methanobrevibacter smithii TS147B whole genome shotgun (WGS)
            project has the project accession NZ_AELS00000000.  This version of
            the project (01) has the accession number NZ_AELS01000000, and
            consists of sequences AELS01000001-AELS01000040.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 198x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000189955.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:29:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,953
            CDSs (total)                      :: 1,911
            Genes (coding)                    :: 1,867
            CDSs (with protein)               :: 1,867
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 25 of 44
            Pseudo Genes (incomplete)         :: 21 of 44
            Pseudo Genes (internal stop)      :: 4 of 44
            Pseudo Genes (multiple problems)  :: 5 of 44
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965064
                     /organism="Methanobrevibacter smithii TS147B"
                     /mol_type="genomic DNA"
                     /strain="TS147B"
                     /db_xref="taxon:911124"
WGS         AELS01000001-AELS01000040
WGS_SCAFLD  NZ_AELS01000001-NZ_AELS01000040
//
LOCUS       NZ_AEMB01000000      1975004 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS96A, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEMB00000000
VERSION     NZ_AEMB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436671
            Assembly: GCF_000190135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS96A
  ORGANISM  Methanobrevibacter smithii TS96A
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1975004)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1975004)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEMB00000000.1.
            The Methanobrevibacter smithii TS96A whole genome shotgun (WGS)
            project has the project accession NZ_AEMB00000000.  This version of
            the project (01) has the accession number NZ_AEMB01000000, and
            consists of sequences AEMB01000001-AEMB01000047.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 584x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000190135.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:29:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,900
            CDSs (total)                      :: 1,858
            Genes (coding)                    :: 1,821
            CDSs (with protein)               :: 1,821
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 25 of 37
            Pseudo Genes (incomplete)         :: 16 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 6 of 37
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975004
                     /organism="Methanobrevibacter smithii TS96A"
                     /mol_type="genomic DNA"
                     /strain="TS96A"
                     /db_xref="taxon:911133"
WGS         AEMB01000001-AEMB01000047
WGS_SCAFLD  NZ_AEMB01000001-NZ_AEMB01000047
//
LOCUS       NZ_ABYW01000000      1704865 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii DSM 2375, whole genome shotgun
            sequencing project.
ACCESSION   NZ_ABYW00000000
VERSION     NZ_ABYW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00008835
            Assembly: GCF_000151245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii DSM 2375
  ORGANISM  Methanobrevibacter smithii DSM 2375
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1704865)
  AUTHORS   Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M.,
            Liep,D. and Gordon,J.
  TITLE     Draft genome sequence of Methanobrevibacter smithii (DSM 2375)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1704865)
  AUTHORS   Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H.,
            Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2008) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ABYW00000000.1.
            The Methanobrevibacter smithii DSM 2375 whole genome shotgun (WGS)
            project has the project accession NZ_ABYW00000000.  This version of
            the project (01) has the accession number NZ_ABYW01000000, and
            consists of sequences ABYW01000001-ABYW01000024.
            Methanobrevibacter smithii (GenBank Accession Number for 16S rDNA
            gene: U55234) is a member of the Euryarchaeota division of the
            domain Archea and has been isolated from human feces. The sequenced
            strain was obtained from Deutsche Sammlung von Mikroorganismen und
            Zellkulturen GmbH (DSMZ) (DSM 2375).
            
            This is a Newbler assembly
            (http://www.454.com/enabling-technology/the-software.asp) 1/2 plate
            of FLX PE 454 Data with a Q20 coverage of 49X.
            
            This sequenced strain is part of a comprehensive, sequence-based
            survey of members of the normal human gut microbiota.  A joint
            effort of the WU-GSC and the Center for Genome Sciences at
            Washington University School of Medicine, the purpose of this
            survey is to provide the general scientific community with a broad
            view of the gene content of 100 representatives of the major
            divisions represented in the intestine's microbial community. This
            information should provide a frame of reference for analyzing
            metagenomic studies of the human gut microbiome. Further details of
            this effort are described in a white paper entitled 'Extending Our
            View of Self: the Human Gut Microbiome Initiative (HGMI)'
            (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMIS
            eq.pdf). These studies are supported by National Human Genome
            Research Institute.
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            For answers to your questions regarding this assembly or project,
            or any other GSC genome project, please visit our Genome Groups web
            page (http://genome.wustl.edu/genome_group_index.cgi) and email the
            designated contact person.
            
            Annotation was added to the contigs in February 2009.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000151245.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:31:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,712
            CDSs (total)                      :: 1,669
            Genes (coding)                    :: 1,638
            CDSs (with protein)               :: 1,638
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 14 of 31
            Pseudo Genes (incomplete)         :: 18 of 31
            Pseudo Genes (internal stop)      :: 6 of 31
            Pseudo Genes (multiple problems)  :: 5 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704865
                     /organism="Methanobrevibacter smithii DSM 2375"
                     /mol_type="genomic DNA"
                     /strain="DSM 2375"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="taxon:483214"
WGS         ABYW01000001-ABYW01000024
WGS_SCAFLD  NZ_DS996911-NZ_DS996919
//
LOCUS       NZ_BAGX02000000      2045801 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter boviskoreani JH1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAGX00000000
VERSION     NZ_BAGX00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00036626
            Assembly: GCF_000320505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter boviskoreani JH1
  ORGANISM  Methanobrevibacter boviskoreani JH1
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Lee,J.H., Rhee,M.S., Kumar,S., Lee,G.H., Chang,D.H., Kim,D.S.,
            Choi,S.H., Lee,D.W., Yoon,M.H. and Kim,B.C.
  TITLE     Genome sequence of Methanobrevibacter sp. strain jh1, isolated from
            rumen of Korean native cattle
  JOURNAL   Genome Announc 1 (1) (2013)
   PUBMED   23469331
  REMARK    DOI:10.1128/genomeA.00002-13
REFERENCE   2  (bases 1 to 2045801)
  AUTHORS   Kim,B.C., Lee,J.H., Lee,M.S., Kumar,S., Lee,G.H., Chang,D.H.,
            Kim,D.S., Choi,S.H., Lee,D.W., Yoon,M.H., Park,H.S. and Yoon,B.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2012) Contact:Byoung Chan Kim KRIBB, Korea
            Research Institute of Bioscience and Biotechnology., Biological
            Resource Center.; 52 Oun-dong, Yusong-gu, Deajeon, Chung Nam
            305-806, Korea
REFERENCE   3  (bases 1 to 2045801)
  AUTHORS   Kim,B.C., Lee,J.H., Lee,M.S., Kumar,S., Lee,G.H., Chang,D.H.,
            Kim,D.S., Choi,S.H., Lee,D.W., Yoon,M.H., Park,H.S. and Yoon,B.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2012) Contact:Byoung Chan Kim KRIBB, Korea
            Research Institute of Bioscience and Biotechnology., Biological
            Resource Center.; 52 Oun-dong, Yusong-gu, Deajeon, Chung Nam
            305-806, Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAGX00000000.2.
            The Methanobrevibacter boviskoreani JH1 whole genome shotgun (WGS)
            project has the project accession NZ_BAGX00000000.  This version of
            the project (02) has the accession number NZ_BAGX02000000, and
            consists of sequences BAGX02000001-BAGX02000054.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.6
            Genome Coverage       :: 34x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000320505.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:31:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,802
            CDSs (total)                      :: 1,761
            Genes (coding)                    :: 1,744
            CDSs (with protein)               :: 1,744
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 6 of 17
            Pseudo Genes (incomplete)         :: 11 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045801
                     /organism="Methanobrevibacter boviskoreani JH1"
                     /mol_type="genomic DNA"
                     /strain="JH1"
                     /type_material="type strain of Methanobrevibacter
                     boviskoreani"
                     /db_xref="taxon:1214066"
WGS         BAGX02000001-BAGX02000054
WGS_SCAFLD  NZ_BAGX02000001-NZ_BAGX02000054
//
LOCUS       NZ_AELV01000000      1886020 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS94B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELV00000000
VERSION     NZ_AELV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436674
            Assembly: GCF_000190015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS94B
  ORGANISM  Methanobrevibacter smithii TS94B
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1886020)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1886020)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELV00000000.1.
            The Methanobrevibacter smithii TS94B whole genome shotgun (WGS)
            project has the project accession NZ_AELV00000000.  This version of
            the project (01) has the accession number NZ_AELV01000000, and
            consists of sequences AELV01000001-AELV01000058.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 106x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000190015.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:31:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,861
            CDSs (total)                      :: 1,819
            Genes (coding)                    :: 1,712
            CDSs (with protein)               :: 1,712
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 76 of 107
            Pseudo Genes (incomplete)         :: 31 of 107
            Pseudo Genes (internal stop)      :: 8 of 107
            Pseudo Genes (multiple problems)  :: 7 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886020
                     /organism="Methanobrevibacter smithii TS94B"
                     /mol_type="genomic DNA"
                     /strain="TS94B"
                     /db_xref="taxon:911127"
WGS         AELV01000001-AELV01000058
WGS_SCAFLD  NZ_AELV01000001-NZ_AELV01000058
//
LOCUS       NZ_AELW01000000      1910054 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS94C, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELW00000000
VERSION     NZ_AELW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436675
            Assembly: GCF_000190035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS94C
  ORGANISM  Methanobrevibacter smithii TS94C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1910054)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1910054)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELW00000000.1.
            The Methanobrevibacter smithii TS94C whole genome shotgun (WGS)
            project has the project accession NZ_AELW00000000.  This version of
            the project (01) has the accession number NZ_AELW01000000, and
            consists of sequences AELW01000001-AELW01000050.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 474x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000190035.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:33:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,872
            CDSs (total)                      :: 1,830
            Genes (coding)                    :: 1,773
            CDSs (with protein)               :: 1,773
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 24 of 57
            Pseudo Genes (incomplete)         :: 34 of 57
            Pseudo Genes (internal stop)      :: 5 of 57
            Pseudo Genes (multiple problems)  :: 5 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910054
                     /organism="Methanobrevibacter smithii TS94C"
                     /mol_type="genomic DNA"
                     /strain="TS94C"
                     /db_xref="taxon:911128"
WGS         AELW01000001-AELW01000050
WGS_SCAFLD  NZ_AELW01000001-NZ_AELW01000050
//
LOCUS       NZ_AELU01000000      1889378 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS94A, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELU00000000
VERSION     NZ_AELU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436680
            Assembly: GCF_000189995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS94A
  ORGANISM  Methanobrevibacter smithii TS94A
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1889378)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1889378)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELU00000000.1.
            The Methanobrevibacter smithii TS94A whole genome shotgun (WGS)
            project has the project accession NZ_AELU00000000.  This version of
            the project (01) has the accession number NZ_AELU01000000, and
            consists of sequences AELU01000001-AELU01000047.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 179x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000189995.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:32:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,846
            CDSs (total)                      :: 1,804
            Genes (coding)                    :: 1,741
            CDSs (with protein)               :: 1,741
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 38 of 63
            Pseudo Genes (incomplete)         :: 24 of 63
            Pseudo Genes (internal stop)      :: 8 of 63
            Pseudo Genes (multiple problems)  :: 6 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889378
                     /organism="Methanobrevibacter smithii TS94A"
                     /mol_type="genomic DNA"
                     /strain="TS94A"
                     /db_xref="taxon:911126"
WGS         AELU01000001-AELU01000047
WGS_SCAFLD  NZ_AELU01000001-NZ_AELU01000047
//
LOCUS       NZ_AELQ01000000      1952171 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS146E, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELQ00000000
VERSION     NZ_AELQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436683
            Assembly: GCF_000189915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS146E
  ORGANISM  Methanobrevibacter smithii TS146E
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1952171)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1952171)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELQ00000000.1.
            The Methanobrevibacter smithii TS146E whole genome shotgun (WGS)
            project has the project accession NZ_AELQ00000000.  This version of
            the project (01) has the accession number NZ_AELQ01000000, and
            consists of sequences AELQ01000001-AELQ01000064.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 199x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000189915.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:32:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,943
            CDSs (total)                      :: 1,900
            Genes (coding)                    :: 1,853
            CDSs (with protein)               :: 1,853
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 29 of 47
            Pseudo Genes (incomplete)         :: 20 of 47
            Pseudo Genes (internal stop)      :: 2 of 47
            Pseudo Genes (multiple problems)  :: 3 of 47
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952171
                     /organism="Methanobrevibacter smithii TS146E"
                     /mol_type="genomic DNA"
                     /strain="TS146E"
                     /db_xref="taxon:911122"
WGS         AELQ01000001-AELQ01000064
WGS_SCAFLD  NZ_AELQ01000001-NZ_AELQ01000064
//
LOCUS       NZ_AGCO01000000      2474500 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanofollis liminatans DSM 4140, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AGCO00000000
VERSION     NZ_AGCO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02256542
            Assembly: GCF_000275865.1
KEYWORDS    WGS; GSC:MIGS:2.1; NONCONTIGUOUS_FINISHED; RefSeq.
SOURCE      Methanofollis liminatans DSM 4140
  ORGANISM  Methanofollis liminatans DSM 4140
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanofollis.
REFERENCE   1  (bases 1 to 2474500)
  AUTHORS   Lucas,S., Han,J., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S.,
            Peters,L., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
            Lu,M., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Spring,S., Schuler,E., Brambilla,E., Klenk,H.-P. and Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The complete genome of Methanofollis liminatans DSM 4140
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2474500)
  AUTHORS   Lucas,S., Han,J., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S.,
            Peters,L., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
            Lu,M., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Spring,S., Schuler,E., Brambilla,E., Klenk,H.-P. and Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2011) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AGCO00000000.1.
            The Methanofollis liminatans DSM 4140 whole genome shotgun (WGS)
            project has the project accession NZ_AGCO00000000.  This version of
            the project (01) has the accession number NZ_AGCO01000000, and
            consists of sequences AGCO01000001-AGCO01000007.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4084266
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
                      David Bruce (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Finishing done by JGI-LANL
            Annotation by JGI-ORNL and JGI-PGF
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Methanofollis liminatans GKZPZ, DSM 4140
            collection_date     :: Missing
            lat_lon             :: Missing
            depth               :: Missing
            alt_elev            :: Missing
            country             :: Germany
            environment         :: Wastewater
            num_replicons       :: 1
            ref_biomaterial     :: DSM 4140
            biotic_relationship :: Free living
            trophic_level       :: Missing
            rel_to_oxygen       :: Anaerobe
            isol_growth_condt   :: Missing
            sequencing_meth     :: WGS
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Noncontiguous Finished
            GOLD Stamp ID       :: Gi02537
            Type Strain         :: Yes
            Greengenes ID       :: 334
            Funding Program     :: DOE-GEBA 2007
            Gene Calling Method :: Prodigal 1.4, GenePRIMP
            Isolation Site      :: Industrial wastewater treatment plant from
                                   Germany
            Temperature Range   :: Mesophile
            Temperature Optimum :: 37C
            Gram Staining       :: Gram-
            Diseases            :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Noncontiguous Finished
            Current Finishing Status :: Noncontiguous Finished
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: 454; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000275865.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:33:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,495
            CDSs (total)                      :: 2,437
            Genes (coding)                    :: 2,430
            CDSs (with protein)               :: 2,430
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 1 of 7
            Pseudo Genes (incomplete)         :: 7 of 7
            Pseudo Genes (internal stop)      :: 0 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474500
                     /organism="Methanofollis liminatans DSM 4140"
                     /mol_type="genomic DNA"
                     /strain="DSM 4140"
                     /isolation_source="Industrial wastewater treatment plant
                     from Germany"
                     /culture_collection="DSM:4140"
                     /type_material="type strain of Methanofollis liminatans"
                     /db_xref="taxon:28892"
                     /geo_loc_name="Germany"
WGS         AGCO01000001-AGCO01000007
WGS_SCAFLD  NZ_CM001555
//
LOCUS       NZ_AHKP01000000      3200246 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanoplanus limicola DSM 2279, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHKP00000000
VERSION     NZ_AHKP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02261391
            Assembly: GCF_000243255.1
KEYWORDS    WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanoplanus limicola DSM 2279
  ORGANISM  Methanoplanus limicola DSM 2279
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoplanus.
REFERENCE   1  (bases 1 to 3200246)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
            Mikhailova,N., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Wirth,R., Brambilla,E.-M., Klenk,H.-P. and Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The Improved High-Quality Draft genome of Methanoplanus limicola
            DSM 2279
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3200246)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
            Mikhailova,N., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
            Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
            Wirth,R., Brambilla,E.-M., Klenk,H.-P. and Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2011) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHKP00000000.1.
            The Methanoplanus limicola DSM 2279 whole genome shotgun (WGS)
            project has the project accession NZ_AHKP00000000.  This version of
            the project (01) has the accession number NZ_AHKP01000000, and
            consists of sequences AHKP01000001-AHKP01000008.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4085574
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
                      David Bruce (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-PGF and JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Methanoplanus limicola M3, DSM 2279
            collection_date     :: Missing
            lat_lon             :: Missing
            depth               :: Missing
            alt_elev            :: Missing
            country             :: Italy
            environment         :: Mud
            num_replicons       :: 1
            ref_biomaterial     :: DSM 2279, ATCC 35062, OCM 101
            biotic_relationship :: Free living
            trophic_level       :: Missing
            rel_to_oxygen       :: Anaerobe
            isol_growth_condt   :: Missing
            sequencing_meth     :: WGS
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Finished
            GOLD Stamp ID       :: Gi02923
            Type Strain         :: Yes
            Greengenes ID       :: 252
            Gene Calling Method :: Prodigal 1.4, GenePRIMP
            Isolation Site      :: Mud of drilling swamp from Italy
            Temperature Range   :: Mesophile
            Temperature Optimum :: 30 - 35C
            Gram Staining       :: Gram-
            Diseases            :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: 454; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000243255.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:33:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,128
            CDSs (total)                      :: 3,063
            Genes (coding)                    :: 3,036
            CDSs (with protein)               :: 3,036
            Genes (RNA)                       :: 65
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 3 of 27
            Pseudo Genes (incomplete)         :: 25 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            Pseudo Genes (multiple problems)  :: 1 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3200246
                     /organism="Methanoplanus limicola DSM 2279"
                     /mol_type="genomic DNA"
                     /strain="DSM 2279"
                     /isolation_source="Mud of drilling swamp from Italy"
                     /culture_collection="DSM:2279"
                     /type_material="type strain of Methanoplanus limicola"
                     /db_xref="taxon:937775"
                     /geo_loc_name="Italy"
WGS         AHKP01000001-AHKP01000008
WGS_SCAFLD  NZ_CM001436
//
LOCUS       NZ_AELR01000000      2008979 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS147A, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELR00000000
VERSION     NZ_AELR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436667
            Assembly: GCF_000189935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147A
  ORGANISM  Methanobrevibacter smithii TS147A
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2008979)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 2008979)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELR00000000.1.
            The Methanobrevibacter smithii TS147A whole genome shotgun (WGS)
            project has the project accession NZ_AELR00000000.  This version of
            the project (01) has the accession number NZ_AELR01000000, and
            consists of sequences AELR01000001-AELR01000061.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 250x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000189935.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:32:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,019
            CDSs (total)                      :: 1,977
            Genes (coding)                    :: 1,910
            CDSs (with protein)               :: 1,910
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 45 of 67
            Pseudo Genes (incomplete)         :: 26 of 67
            Pseudo Genes (internal stop)      :: 1 of 67
            Pseudo Genes (multiple problems)  :: 4 of 67
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008979
                     /organism="Methanobrevibacter smithii TS147A"
                     /mol_type="genomic DNA"
                     /strain="TS147A"
                     /db_xref="taxon:911123"
WGS         AELR01000001-AELR01000061
WGS_SCAFLD  NZ_AELR01000001-NZ_AELR01000061
//
LOCUS       NZ_AELZ01000000      1978848 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS95C, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AELZ00000000
VERSION     NZ_AELZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436669
            Assembly: GCF_000190095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS95C
  ORGANISM  Methanobrevibacter smithii TS95C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1978848)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1978848)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AELZ00000000.1.
            The Methanobrevibacter smithii TS95C whole genome shotgun (WGS)
            project has the project accession NZ_AELZ00000000.  This version of
            the project (01) has the accession number NZ_AELZ01000000, and
            consists of sequences AELZ01000001-AELZ01000037.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 100x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000190095.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:33:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,785
            CDSs (with protein)               :: 1,785
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 58 of 71
            Pseudo Genes (incomplete)         :: 14 of 71
            Pseudo Genes (internal stop)      :: 2 of 71
            Pseudo Genes (multiple problems)  :: 3 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978848
                     /organism="Methanobrevibacter smithii TS95C"
                     /mol_type="genomic DNA"
                     /strain="TS95C"
                     /db_xref="taxon:911131"
WGS         AELZ01000001-AELZ01000037
WGS_SCAFLD  NZ_AELZ01000001-NZ_AELZ01000037
//
LOCUS       NZ_ABYV02000000      1727775 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii DSM 2374, whole genome shotgun
            sequencing project.
ACCESSION   NZ_ABYV00000000
VERSION     NZ_ABYV00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00008834
            Assembly: GCF_000151225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii DSM 2374
  ORGANISM  Methanobrevibacter smithii DSM 2374
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1727775)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and
            Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
REFERENCE   2  (bases 1 to 1727775)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and
            Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2009) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
REFERENCE   3  (bases 1 to 1727775)
  AUTHORS   Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H.,
            Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2008) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ABYV00000000.2.
            
            On Oct 5, 2009 this sequence version replaced NZ_ABYV00000000.1.
            The Methanobrevibacter smithii DSM 2374 whole genome shotgun (WGS)
            project has the project accession NZ_ABYV00000000.  This version of
            the project (02) has the accession number NZ_ABYV02000000, and
            consists of sequences ABYV02000001-ABYV02000025.
            Methanobrevibacter smithii F1 (GenBank Accession Number for 16S
            rDNA gene: U55235*) is a member of the domain Archea and has been
            isolated from human feces. The sequenced strain was obtained from
            Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)
            (DSM 2374).
            
            * The available GenBank Accession Number is for the 16S rDNA gene
            of a strain related to Methanobrevibacter smithii F1, not this
            sequenced strain.
            
            We have performed one round of automated sequence improvement
            (pre-finishing), along with manual improvement that includes
            breaking apart any mis-assembly, and making manual joins where
            possible. Manual edits also are made where the consensus appears to
            be incorrect. All low quality data on the ends of contigs is
            removed. Contigs are ordered and oriented where possible.
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            This work was supported by the National Human Genome Research
            Institute and the NIH Roadmap Human Microbiome Project
            [http://nihroadmap.nih.gov/hmp/].
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            Genome Coverage: 47x
            Sequencing Technology: 454
            
            Annotation was added to the contigs in February 2010.
            Product names were updated in June 2013.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000151225.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:31:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,730
            CDSs (total)                      :: 1,688
            Genes (coding)                    :: 1,652
            CDSs (with protein)               :: 1,652
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 14 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 2 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727775
                     /organism="Methanobrevibacter smithii DSM 2374"
                     /mol_type="genomic DNA"
                     /strain="DSM 2374"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /culture_collection="DSM:2374"
                     /db_xref="taxon:521002"
WGS         ABYV02000001-ABYV02000025
WGS_SCAFLD  NZ_GG704759-NZ_GG704768
//
LOCUS       NZ_AEMC01000000      1869210 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS96B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEMC00000000
VERSION     NZ_AEMC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436681
            Assembly: GCF_000190155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS96B
  ORGANISM  Methanobrevibacter smithii TS96B
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1869210)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1869210)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEMC00000000.1.
            The Methanobrevibacter smithii TS96B whole genome shotgun (WGS)
            project has the project accession NZ_AEMC00000000.  This version of
            the project (01) has the accession number NZ_AEMC01000000, and
            consists of sequences AEMC01000001-AEMC01000045.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 598x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000190155.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:33:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,803
            CDSs (total)                      :: 1,765
            Genes (coding)                    :: 1,738
            CDSs (with protein)               :: 1,738
            Genes (RNA)                       :: 38
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 14 of 27
            Pseudo Genes (incomplete)         :: 18 of 27
            Pseudo Genes (internal stop)      :: 3 of 27
            Pseudo Genes (multiple problems)  :: 8 of 27
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869210
                     /organism="Methanobrevibacter smithii TS96B"
                     /mol_type="genomic DNA"
                     /strain="TS96B"
                     /db_xref="taxon:911134"
WGS         AEMC01000001-AEMC01000045
WGS_SCAFLD  NZ_AEMC01000001-NZ_AEMC01000045
//
LOCUS       NZ_AEKU01000000      1782572 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS145A, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEKU00000000
VERSION     NZ_AEKU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436678
            Assembly: GCF_000189795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS145A
  ORGANISM  Methanobrevibacter smithii TS145A
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1782572)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1782572)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEKU00000000.1.
            The Methanobrevibacter smithii TS145A whole genome shotgun (WGS)
            project has the project accession NZ_AEKU00000000.  This version of
            the project (01) has the accession number NZ_AEKU01000000, and
            consists of sequences AEKU01000001-AEKU01000044.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 148x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000189795.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:34:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,784
            CDSs (total)                      :: 1,744
            Genes (coding)                    :: 1,633
            CDSs (with protein)               :: 1,633
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 83 of 111
            Pseudo Genes (incomplete)         :: 22 of 111
            Pseudo Genes (internal stop)      :: 8 of 111
            Pseudo Genes (multiple problems)  :: 2 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782572
                     /organism="Methanobrevibacter smithii TS145A"
                     /mol_type="genomic DNA"
                     /strain="TS145A"
                     /db_xref="taxon:911116"
WGS         AEKU01000001-AEKU01000044
WGS_SCAFLD  NZ_AEKU01000001-NZ_AEKU01000044
//
LOCUS       NZ_AEMD01000000      1818239 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS96C, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEMD00000000
VERSION     NZ_AEMD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436672
            Assembly: GCF_000190175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS96C
  ORGANISM  Methanobrevibacter smithii TS96C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1818239)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 1818239)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEMD00000000.1.
            The Methanobrevibacter smithii TS96C whole genome shotgun (WGS)
            project has the project accession NZ_AEMD00000000.  This version of
            the project (01) has the accession number NZ_AEMD01000000, and
            consists of sequences AEMD01000001-AEMD01000108.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 537x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000190175.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:36:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,825
            CDSs (total)                      :: 1,783
            Genes (coding)                    :: 1,702
            CDSs (with protein)               :: 1,702
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 41 of 81
            Pseudo Genes (incomplete)         :: 40 of 81
            Pseudo Genes (internal stop)      :: 5 of 81
            Pseudo Genes (multiple problems)  :: 5 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818239
                     /organism="Methanobrevibacter smithii TS96C"
                     /mol_type="genomic DNA"
                     /strain="TS96C"
                     /db_xref="taxon:911135"
WGS         AEMD01000001-AEMD01000108
WGS_SCAFLD  NZ_AEMD01000001-NZ_AEMD01000108
//
LOCUS       NZ_AEMA01000000      2011683 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii TS95D, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEMA00000000
VERSION     NZ_AEMA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02436670
            Assembly: GCF_000190115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS95D
  ORGANISM  Methanobrevibacter smithii TS95D
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2011683)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Pan-genome of the dominant human gut-associated archaeon,
            Methanobrevibacter smithii, studied in twins
  JOURNAL   Proc Natl Acad Sci U S A 108 Suppl 1 (Suppl 1), 4599-4606 (2011)
   PUBMED   21317366
REFERENCE   2  (bases 1 to 2011683)
  AUTHORS   Hansen,E.E., Lozupone,C.A., Rey,F.E., Wu,M., Guruge,J.L., Narra,A.,
            Goodfellow,J., Zaneveld,J.R., McDonald,D.T., Goodrich,J.A.,
            Heath,A.C., Knight,R. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2010) Center for Genome Sciences and Systems
            Biology, Washington University in St.Louis, 4444 Forest Park Blvd.,
            Room 5401, Saint Louis, MO 63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEMA00000000.1.
            The Methanobrevibacter smithii TS95D whole genome shotgun (WGS)
            project has the project accession NZ_AEMA00000000.  This version of
            the project (01) has the accession number NZ_AEMA01000000, and
            consists of sequences AEMA01000001-AEMA01000058.
            Bacteria and DNA available from Washington University in St.Louis.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 0.7.63 Illumina; Newbler v. 2.3
                                     454; AMOS minimus2 hybrid assembly
            Genome Coverage       :: 472x
            Sequencing Technology :: Illumina; 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000190115.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:35:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,919
            CDSs (total)                      :: 1,876
            Genes (coding)                    :: 1,828
            CDSs (with protein)               :: 1,828
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 24 of 48
            Pseudo Genes (incomplete)         :: 26 of 48
            Pseudo Genes (internal stop)      :: 3 of 48
            Pseudo Genes (multiple problems)  :: 5 of 48
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011683
                     /organism="Methanobrevibacter smithii TS95D"
                     /mol_type="genomic DNA"
                     /strain="TS95D"
                     /db_xref="taxon:911132"
WGS         AEMA01000001-AEMA01000058
WGS_SCAFLD  NZ_AEMA01000001-NZ_AEMA01000058
//
LOCUS       NZ_AGJL01000000      1818783 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanotorris formicicus Mc-S-70, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AGJL00000000
VERSION     NZ_AGJL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02261372
            Assembly: GCF_000243455.1
KEYWORDS    WGS; GSC:MIGS:2.1; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanotorris formicicus Mc-S-70
  ORGANISM  Methanotorris formicicus Mc-S-70
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanocaldococcaceae;
            Methanotorris.
REFERENCE   1  (bases 1 to 1818783)
  AUTHORS   Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S.,
            Peters,L., Land,M.L., Hauser,L., Sieprawska-Lupa,M., Takai,K.,
            Miyazaki,J., Whitman,W. and Woyke,T.J.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     The draft genome of Methanotorris formicicus Mc-S-70
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1818783)
  AUTHORS   Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S.,
            Peters,L., Land,M.L., Hauser,L., Sieprawska-Lupa,M., Takai,K.,
            Miyazaki,J., Whitman,W. and Woyke,T.J.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2011) US DOE Joint Genome Institute, 2800
            Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AGJL00000000.1.
            The Methanotorris formicicus Mc-S-70 whole genome shotgun (WGS)
            project has the project accession NZ_AGJL00000000.  This version of
            the project (01) has the accession number NZ_AGJL01000000, and
            consists of sequences AGJL01000001-AGJL01000121.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4086482
            Source DNA and Organism available from William B. Whitman
            (whitman@uga.edu)
            Contacts: William B. Whitman (whitman@uga.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Methanotorris formicicus Mc-S-70
            collection_date     :: March, 2002
            lat_lon             :: Missing
            depth               :: Missing
            alt_elev            :: Missing
            country             :: Indian Ocean
            environment         :: Hydrothermal vent
            num_replicons       :: 121
            ref_biomaterial     :: JCM 11930T, ATCC BAA-687, DSM 16983
            biotic_relationship :: Free living
            trophic_level       :: Autotroph, Lithotroph
            rel_to_oxygen       :: Anaerobe
            isol_growth_condt   :: Missing
            sequencing_meth     :: WGS
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Finished
            GOLD Stamp ID       :: Gi02046
            Type Strain         :: No
            Greengenes ID       :: 135915
            Gene Calling Method :: Prodigal 1.4, GenePRIMP
            Isolation Site      :: Black smoker chimney at the Kairei field in
                                   the Central Indian Ridge, Indian Ocean
            Isolation Comments  :: isolated by Takai
            Cell Shape          :: Coccus-shaped
            Temperature Range   :: Thermophile
            Temperature Optimum :: 55 - 83C
            pH                  :: 6 - 8.5
            Gram Staining       :: Gram-
            Diseases            :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: 454; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000243455.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:45:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,042
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 24 of 65
            Pseudo Genes (incomplete)         :: 45 of 65
            Pseudo Genes (internal stop)      :: 2 of 65
            Pseudo Genes (multiple problems)  :: 6 of 65
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818783
                     /organism="Methanotorris formicicus Mc-S-70"
                     /mol_type="genomic DNA"
                     /strain="Mc-S-70"
                     /isolation_source="Black smoker chimney at the Kairei
                     field in the Central Indian Ridge, Indian Ocean"
                     /type_material="type strain of Methanotorris formicicus"
                     /db_xref="taxon:647171"
                     /geo_loc_name="Indian Ocean"
                     /collection_date="2002-03"
WGS         AGJL01000001-AGJL01000121
WGS_SCAFLD  NZ_AGJL01000001-NZ_AGJL01000121
//
LOCUS       NZ_AKID01000000      2164073 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Thermococcus sp. PK, whole genome shotgun sequencing project.
ACCESSION   NZ_AKID00000000
VERSION     NZ_AKID00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00203929
            Assembly: GCF_000430485.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Thermococcus sp. PK
  ORGANISM  Thermococcus sp. PK
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2164073)
  AUTHORS   Suflita,J., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AKID00000000.1.
            The Thermococcus sp. PK whole genome shotgun (WGS) project has the
            project accession NZ_AKID00000000.  This version of the project
            (01) has the accession number NZ_AKID01000000, and consists of
            sequences AKID01000001-AKID01000132.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 403400
            Source DNA and Organism available from Joseph  Suflita
            (jsuflita@ou.edu)
            Source DNA available from Joseph  Suflita (jsuflita@ou.edu)
            Organism available from Joseph  Suflita (jsuflita@ou.edu)
            Contacts: Joseph  Suflita (jsuflita@ou.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            assembly                 :: ALLPATHS v. R37654
            investigation_type       :: bacteria_archaea
            project_name             :: Thermococcus sp. PK
            sequencing_meth          :: WGS
            GOLD Stamp ID            :: Gi07578
            Current Finishing Status :: Level 3: Improved-High-Quality Draft
            Funding Program          :: DOE-CSP 2010
            Gene Calling Method      :: Prodigal, GenePRIMP
            Gram Staining            :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: ALLPATHS v. R37654
            Genome Coverage          :: Unknown
            Sequencing Technology    :: 454-GS-FLX-Titanium; Illumina GAII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000430485.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:05:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,545
            CDSs (total)                      :: 2,493
            Genes (coding)                    :: 2,318
            CDSs (with protein)               :: 2,318
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 77 of 175
            Pseudo Genes (incomplete)         :: 121 of 175
            Pseudo Genes (internal stop)      :: 6 of 175
            Pseudo Genes (multiple problems)  :: 28 of 175
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164073
                     /organism="Thermococcus sp. PK"
                     /mol_type="genomic DNA"
                     /strain="PK"
                     /db_xref="taxon:913025"
WGS         AKID01000001-AKID01000132
WGS_SCAFLD  NZ_KE387145-NZ_KE387151
//
LOCUS       NZ_AOJL01000000      3645313 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum coriense DSM 10284, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJL00000000
VERSION     NZ_AOJL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471634
            Assembly: GCF_000337035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum coriense DSM 10284
  ORGANISM  Halorubrum coriense DSM 10284
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3645313)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3645313)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJL00000000.1.
            The Halorubrum coriense DSM 10284 whole genome shotgun (WGS)
            project has the project accession NZ_AOJL00000000.  This version of
            the project (01) has the accession number NZ_AOJL01000000, and
            consists of sequences AOJL01000001-AOJL01000069.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337035.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:47:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,708
            CDSs (total)                      :: 3,653
            Genes (coding)                    :: 3,519
            CDSs (with protein)               :: 3,519
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 1 of 134
            Pseudo Genes (frameshifted)       :: 49 of 134
            Pseudo Genes (incomplete)         :: 95 of 134
            Pseudo Genes (internal stop)      :: 18 of 134
            Pseudo Genes (multiple problems)  :: 24 of 134
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3645313
                     /organism="Halorubrum coriense DSM 10284"
                     /mol_type="genomic DNA"
                     /strain="DSM 10284"
                     /culture_collection="DSM:10284"
                     /type_material="type strain of Halorubrum coriense"
                     /db_xref="taxon:1227466"
WGS         AOJL01000001-AOJL01000069
WGS_SCAFLD  NZ_AOJL01000001-NZ_AOJL01000069
//
LOCUS       NZ_AOJG01000000      3425042 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum lipolyticum DSM 21995, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOJG00000000
VERSION     NZ_AOJG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471632
            Assembly: GCF_000337375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum lipolyticum DSM 21995
  ORGANISM  Halorubrum lipolyticum DSM 21995
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3425042)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3425042)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOJG00000000.1.
            The Halorubrum lipolyticum DSM 21995 whole genome shotgun (WGS)
            project has the project accession NZ_AOJG00000000.  This version of
            the project (01) has the accession number NZ_AOJG01000000, and
            consists of sequences AOJG01000001-AOJG01000041.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337375.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:50:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,370
            CDSs (total)                      :: 3,316
            Genes (coding)                    :: 3,255
            CDSs (with protein)               :: 3,255
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 22 of 61
            Pseudo Genes (incomplete)         :: 45 of 61
            Pseudo Genes (internal stop)      :: 3 of 61
            Pseudo Genes (multiple problems)  :: 9 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3425042
                     /organism="Halorubrum lipolyticum DSM 21995"
                     /mol_type="genomic DNA"
                     /strain="DSM 21995"
                     /culture_collection="DSM:21995"
                     /type_material="type strain of Halorubrum lipolyticum"
                     /db_xref="taxon:1227482"
WGS         AOJG01000001-AOJG01000041
WGS_SCAFLD  NZ_AOJG01000001-NZ_AOJG01000041
//
LOCUS       NZ_AUMX01000000      1702624 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanocorpusculum bavaricum DSM 4179, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AUMX00000000
VERSION     NZ_AUMX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02441137
            Assembly: GCF_000430905.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanocorpusculum bavaricum DSM 4179
  ORGANISM  Methanocorpusculum bavaricum DSM 4179
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanocorpusculum.
REFERENCE   1  (bases 1 to 1702624)
  AUTHORS   Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K.,
            Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A.,
            Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AUMX00000000.1.
            The Methanocorpusculum bavaricum DSM 4179 whole genome shotgun
            (WGS) project has the project accession NZ_AUMX00000000.  This
            version of the project (01) has the accession number
            NZ_AUMX01000000, and consists of sequences
            AUMX01000001-AUMX01000033.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1013574
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Nikos   Kyrpides (nckyrpides@lbl.gov)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI
            Annotation by JGI
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            country             :: Germany
            environment         :: Wastewater; Mud; Sediment; Ponds; Aquatic
            investigation_type  :: bacteria_archaea
            isol_growth_condt   :: 2742452
            lat_lon             :: 49.01468 12.124944
            project_name        :: Methanocorpusculum bavaricum DSM 4179
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 4179, ATCC BAA-929
            rel_to_oxygen       :: Anaerobe
            finishing_strategy  :: Level 1: Standard Draft
            trophic_level       :: Chemoorganotroph
            GOLD Stamp ID       :: Gi11678
            Type Strain         :: Yes
            Funding Program     :: DOE-CSP 2012
            Isolation Site      :: Muddy sediment of wastewater pond
            Cell Shape          :: Coccus-shaped
            Motility            :: Motile
            Temperature Range   :: Mesophile
            Temperature Optimum :: 37 C
            pH                  :: 7
            Gram Staining       :: Gram-
            Phenotypes          :: Neutrophilic
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before 2013-05-03
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000430905.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:58:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,772
            CDSs (total)                      :: 1,718
            Genes (coding)                    :: 1,714
            CDSs (with protein)               :: 1,714
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 4 of 4
            Pseudo Genes (internal stop)      :: 0 of 4
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702624
                     /organism="Methanocorpusculum bavaricum DSM 4179"
                     /mol_type="genomic DNA"
                     /strain="DSM 4179"
                     /culture_collection="DSM:4179"
                     /type_material="type strain of Methanocorpusculum
                     bavaricum"
                     /db_xref="taxon:1122230"
                     /geo_loc_name="Germany"
                     /lat_lon="49.01468 N 12.124944 E"
WGS         AUMX01000001-AUMX01000033
WGS_SCAFLD  NZ_AUMX01000001-NZ_AUMX01000003
WGS_SCAFLD  NZ_AUMX01000006
WGS_SCAFLD  NZ_AUMX01000011-NZ_AUMX01000012
WGS_SCAFLD  NZ_AUMX01000015-NZ_AUMX01000016
WGS_SCAFLD  NZ_AUMX01000019-NZ_AUMX01000021
WGS_SCAFLD  NZ_AUMX01000024-NZ_AUMX01000033
WGS_SCAFLD  NZ_KE387268-NZ_KE387273
//
LOCUS       NZ_APMM01000000      1207361 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanocaldococcus villosus KIN24-T80, whole genome shotgun
            sequencing project.
ACCESSION   NZ_APMM00000000
VERSION     NZ_APMM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470129
            Assembly: GCF_000363885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocaldococcus villosus KIN24-T80
  ORGANISM  Methanocaldococcus villosus KIN24-T80
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanocaldococcaceae;
            Methanocaldococcus.
REFERENCE   1  (bases 1 to 1207361)
  AUTHORS   Thennarasu,S., Polireddy,D., Antony,A., Yada,M.R., Algarawi,S. and
            Sivakumar,N.
  TITLE     Draft Genome Sequence of a Highly Flagellated, Fast-Swimming
            Archaeon, Methanocaldococcus villosus Strain KIN24-T80 (DSM 22612)
  JOURNAL   Genome Announc 1 (4), e00481-13 (2013)
   PUBMED   23846275
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1207361)
  AUTHORS   Sugumar,T., Polireddy,D.R., Antony,A., Madhava,Y.R. and
            Sivakumar,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2013) Bioscience Core Lab, King Abdullah
            University of Science and Technology, Thuwal, Jeddah, Madinah
            23955-6900, Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            APMM00000000.1.
            The Methanocaldococcus villosus KIN24-T80 whole genome shotgun
            (WGS) project has the project accession NZ_APMM00000000.  This
            version of the project (01) has the accession number
            NZ_APMM01000000, and consists of sequences
            APMM01000001-APMM01000081.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC v. 5.5.2
            Genome Coverage       :: 400x
            Sequencing Technology :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000363885.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:04:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,403
            CDSs (total)                      :: 1,367
            Genes (coding)                    :: 1,265
            CDSs (with protein)               :: 1,265
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 78 of 102
            Pseudo Genes (incomplete)         :: 26 of 102
            Pseudo Genes (internal stop)      :: 2 of 102
            Pseudo Genes (multiple problems)  :: 4 of 102
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1207361
                     /organism="Methanocaldococcus villosus KIN24-T80"
                     /mol_type="genomic DNA"
                     /strain="KIN24-T80"
                     /isolation_source="hot marine sediment"
                     /culture_collection="DSM:22612"
                     /type_material="type strain of Methanocaldococcus
                     villosus"
                     /db_xref="taxon:1069083"
                     /geo_loc_name="Iceland"
                     /collection_date="2011-01"
WGS         APMM01000001-APMM01000081
WGS_SCAFLD  NZ_APMM01000001-NZ_APMM01000081
//
LOCUS       NZ_AQUK01000000      1249385 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanocaldococcus villosus KIN24-T80, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AQUK00000000
VERSION     NZ_AQUK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02261307
            Assembly: GCF_000371805.1
KEYWORDS    WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanocaldococcus villosus KIN24-T80
  ORGANISM  Methanocaldococcus villosus KIN24-T80
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanocaldococcaceae;
            Methanocaldococcus.
REFERENCE   1  (bases 1 to 1249385)
  AUTHORS   Klenk,H.-P., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQUK00000000.1.
            The Methanocaldococcus villosus KIN24-T80 whole genome shotgun
            (WGS) project has the project accession NZ_AQUK00000000.  This
            version of the project (01) has the accession number
            NZ_AQUK01000000, and consists of sequences
            AQUK01000001-AQUK01000002.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 404092
            Source DNA and Organism available from Hans-Peter  Klenk
            (hpk@dsmz.de)
            Source DNA available from Hans-Peter  Klenk (hpk@dsmz.de)
            Organism available from Hans-Peter  Klenk (hpk@dsmz.de)
            Contacts: Hans-Peter  Klenk (hpk@dsmz.de)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            investigation_type       :: bacteria_archaea
            project_name             :: Methanocaldococcus villosus KIN24-T80
            collection_date          :: Missing
            lat_lon                  :: 67.096 -18.711
            depth                    :: Missing
            alt_elev                 :: Missing
            country                  :: Iceland
            num_replicons            :: Missing
            ref_biomaterial          :: DSM 22612
            biotic_relationship      :: Missing
            rel_to_oxygen            :: Anaerobe
            isol_growth_condt        :: Missing
            assembly                 :: Velvet v. 1.1.05; ALLPATHS v. 39750;
                                        Phrap v. 4.24
            finishing_strategy       :: Missing
            environment              :: Sediment
            trophic_level            :: Chemolithoautotroph
            sequencing_meth          :: WGS
            GOLD Stamp ID            :: Gi12115
            Current Finishing Status :: Level 3: Improved-High-Quality Draft
            Type Strain              :: Yes
            Funding Program          :: DOE-CSP 2011
            Isolation Site           :: Hot marine sediment
            Temperature Range        :: Hyperthermophile
            Gram Staining            :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.05; ALLPATHS v. 39750;
                                        Phrap v. 4.24
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000371805.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:03:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,413
            CDSs (total)                      :: 1,368
            Genes (coding)                    :: 1,360
            CDSs (with protein)               :: 1,360
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 5 of 8
            Pseudo Genes (incomplete)         :: 4 of 8
            Pseudo Genes (internal stop)      :: 1 of 8
            Pseudo Genes (multiple problems)  :: 2 of 8
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1249385
                     /organism="Methanocaldococcus villosus KIN24-T80"
                     /mol_type="genomic DNA"
                     /strain="KIN24-T80"
                     /isolation_source="Hot marine sediment"
                     /type_material="type strain of Methanocaldococcus
                     villosus"
                     /db_xref="taxon:1069083"
                     /geo_loc_name="Iceland"
                     /lat_lon="67.096 N 18.711 W"
WGS         AQUK01000001-AQUK01000002
WGS_SCAFLD  NZ_AQUK01000001-NZ_AQUK01000002
//
LOCUS       NZ_CBVX010000000     2221072 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter arboriphilus ANOR1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBVX000000000
VERSION     NZ_CBVX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138839
            Assembly: GCF_000513315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter arboriphilus ANOR1
  ORGANISM  Methanobrevibacter arboriphilus ANOR1
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Khelaifia,S., Garibal,M.Robert.C., Raoult,D. and Drancourt,M.
  TITLE     Draft Genome Methanobrevibacter arboriphilus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2221072)
  AUTHORS   GENOMES,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-SEP-2013) Fac de medecine, URMITE, 27 Bd J Moulin,
            13385 Marseille Cedex 05, FRANCE
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBVX000000000.1.
            The Methanobrevibacter arboriphilus ANOR1 whole genome shotgun
            (WGS) project has the project accession NZ_CBVX000000000.  This
            version of the project (01) has the accession number
            NZ_CBVX010000000, and consists of sequences
            CBVX010000001-CBVX010000005.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000513315.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:04:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,974
            CDSs (total)                      :: 1,930
            Genes (coding)                    :: 1,783
            CDSs (with protein)               :: 1,783
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 124 of 147
            Pseudo Genes (incomplete)         :: 24 of 147
            Pseudo Genes (internal stop)      :: 5 of 147
            Pseudo Genes (multiple problems)  :: 6 of 147
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221072
                     /organism="Methanobrevibacter arboriphilus ANOR1"
                     /mol_type="genomic DNA"
                     /strain="ANOR1"
                     /db_xref="taxon:1401244"
WGS         CBVX010000001-CBVX010000005
WGS_SCAFLD  NZ_HG794426
//
LOCUS       NZ_AZAJ01000000      3151883 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanolobus tindarius DSM 2278, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AZAJ00000000
VERSION     NZ_AZAJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02597164
            Assembly: GCF_000504205.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanolobus tindarius DSM 2278
  ORGANISM  Methanolobus tindarius DSM 2278
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 3151883)
  AUTHORS   Eisen,J., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AZAJ00000000.1.
            The Methanolobus tindarius DSM 2278 whole genome shotgun (WGS)
            project has the project accession NZ_AZAJ00000000.  This version of
            the project (01) has the accession number NZ_AZAJ01000000, and
            consists of sequence AZAJ01000001.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 97916
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan  Eisen (jaeisen@ucdavis.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI
            Annotation by JGI
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            country                  :: Italy
            environment              :: Fresh water; Sediment
            investigation_type       :: bacteria_archaea
            lat_lon                  :: 38.132591 15.05422
            project_name             :: Methanolobus tindarius DSM 2278
            sequencing_meth          :: WGS
            ref_biomaterial          :: DSM 2278, ATCC 35996, OCM 150
            biotic_relationship      :: Free living
            rel_to_oxygen            :: Anaerobe
            finishing_strategy       :: Level 2: High-Quality Draft
            GOLD Stamp ID            :: Gi02920
            Current Finishing Status :: Level 2: High-Quality Draft
            Type Strain              :: Yes
            Greengenes ID            :: 423
            Funding Program          :: DOE-CSP 2011
            Gene Calling Method      :: Prodigal, GenePRIMP
            Isolation Site           :: Sediment from Lakes of Marinello, Italy
            Cell Shape               :: Coccus-shaped
            Temperature Range        :: Mesophile
            Temperature Optimum      :: 25
            Gram Staining            :: Gram-
            Diseases                 :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Unknown program v. before 2012-06-04
            Genome Coverage          :: Unknown
            Sequencing Technology    :: 454; Sanger
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000504205.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:05:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,014
            CDSs (total)                      :: 2,952
            Genes (coding)                    :: 2,944
            CDSs (with protein)               :: 2,944
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 0 of 8
            Pseudo Genes (incomplete)         :: 2 of 8
            Pseudo Genes (internal stop)      :: 6 of 8
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3151883
                     /organism="Methanolobus tindarius DSM 2278"
                     /mol_type="genomic DNA"
                     /strain="DSM 2278"
                     /isolation_source="not provided; submitted under MIGS 2.1"
                     /culture_collection="DSM:2278"
                     /type_material="type strain of Methanolobus tindarius"
                     /db_xref="taxon:1090322"
                     /geo_loc_name="Italy"
                     /lat_lon="38.132591 N 15.05422 E"
WGS         AZAJ01000001
WGS_SCAFLD  NZ_AZAJ01000001
//
LOCUS       NZ_CBVY010000000     2798402 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum sp. AJ67, whole genome shotgun sequencing project.
ACCESSION   NZ_CBVY000000000
VERSION     NZ_CBVY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138845
            Assembly: GCF_000513435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. AJ67
  ORGANISM  Halorubrum sp. AJ67
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Maldonado,M.J., Turjanski,A. and Farias,M.E.
  TITLE     Draft Genome Sequence of the poli-extremophilic Halorubrum sp.
            AJ67, isolated from hyperarsenic lakes, in the Argentinean Puna
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2798402)
  AUTHORS   Burguener,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2013) QB, FCEN - UBA, Romulo Naon 4064 2B, 1430,
            ARGENTINA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBVY000000000.1.
            The Halorubrum sp. AJ67 whole genome shotgun (WGS) project has the
            project accession NZ_CBVY000000000.  This version of the project
            (01) has the accession number NZ_CBVY010000000, and consists of
            sequences CBVY010000001-CBVY010000050.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000513435.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:07:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,226
            CDSs (total)                      :: 3,171
            Genes (coding)                    :: 2,669
            CDSs (with protein)               :: 2,669
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 502
            CDSs (without protein)            :: 502
            Pseudo Genes (ambiguous residues) :: 24 of 502
            Pseudo Genes (frameshifted)       :: 194 of 502
            Pseudo Genes (incomplete)         :: 334 of 502
            Pseudo Genes (internal stop)      :: 19 of 502
            Pseudo Genes (multiple problems)  :: 64 of 502
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2798402
                     /organism="Halorubrum sp. AJ67"
                     /mol_type="genomic DNA"
                     /strain="AJ67"
                     /db_xref="taxon:1173487"
WGS         CBVY010000001-CBVY010000050
WGS_SCAFLD  NZ_CBVY010000001-NZ_CBVY010000050
//
LOCUS       NZ_CBWS010000000     2083511 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter oralis JMR01, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CBWS000000000
VERSION     NZ_CBWS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138857
            Assembly: GCF_000529525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter oralis JMR01
  ORGANISM  Methanobrevibacter oralis JMR01
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Khelaifia,S., Garibal,M., Robert,C., Raoult,D. and Drancourt,M.
  TITLE     Draft Genome Methanobrevibacter oralis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2083511)
  AUTHORS   GENOMES,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2013) Fac de medecine, URMITE, 27 Bd J Moulin,
            13385 Marseille Cedex 05, FRANCE
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBWS000000000.1.
            The Methanobrevibacter oralis JMR01 whole genome shotgun (WGS)
            project has the project accession NZ_CBWS000000000.  This version
            of the project (01) has the accession number NZ_CBWS010000000, and
            consists of sequences CBWS010000001-CBWS010000060.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000529525.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:07:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,186
            CDSs (total)                      :: 2,146
            Genes (coding)                    :: 1,895
            CDSs (with protein)               :: 1,895
            Genes (RNA)                       :: 40
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 251
            CDSs (without protein)            :: 251
            Pseudo Genes (ambiguous residues) :: 0 of 251
            Pseudo Genes (frameshifted)       :: 208 of 251
            Pseudo Genes (incomplete)         :: 47 of 251
            Pseudo Genes (internal stop)      :: 5 of 251
            Pseudo Genes (multiple problems)  :: 7 of 251
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083511
                     /organism="Methanobrevibacter oralis JMR01"
                     /mol_type="genomic DNA"
                     /strain="JMR01"
                     /db_xref="taxon:1415626"
WGS         CBWS010000001-CBWS010000060
WGS_SCAFLD  NZ_HG796199-NZ_HG796212
//
LOCUS       NZ_JHWX01000000      2038713 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter wolinii SH, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JHWX00000000
VERSION     NZ_JHWX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02744021
            Assembly: GCF_000621965.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanobrevibacter wolinii SH
  ORGANISM  Methanobrevibacter wolinii SH
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2038713)
  AUTHORS   Kelly,W., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JHWX00000000.1.
            The Methanobrevibacter wolinii SH whole genome shotgun (WGS)
            project has the project accession NZ_JHWX00000000.  This version of
            the project (01) has the accession number NZ_JHWX01000000, and
            consists of sequences JHWX01000001-JHWX01000032.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1026029
            Source DNA and Organism available from William   Kelly
            (bill.kelly@agresearch.co.nz)
            Source DNA available from William   Kelly
            (bill.kelly@agresearch.co.nz)
            Organism available from William   Kelly
            (bill.kelly@agresearch.co.nz)
            Contacts: William   Kelly (bill.kelly@agresearch.co.nz)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            assembly            :: vpAllpaths v. r46652
            investigation_type  :: bacteria_archaea
            project_name        :: Methanobrevibacter wolinii SH
            sequencing_meth     :: WGS
            GOLD Stamp ID       :: Gi0054485
            Gene Calling Method :: Prodigal 2.5
            Gram Staining       :: Gram+
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: vpAllpaths v. r46652
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000621965.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:09:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,762
            CDSs (total)                      :: 1,719
            Genes (coding)                    :: 1,687
            CDSs (with protein)               :: 1,687
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 6 of 32
            Pseudo Genes (incomplete)         :: 26 of 32
            Pseudo Genes (internal stop)      :: 3 of 32
            Pseudo Genes (multiple problems)  :: 3 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038713
                     /organism="Methanobrevibacter wolinii SH"
                     /mol_type="genomic DNA"
                     /strain="SH"
                     /type_material="type strain of Methanobrevibacter wolinii"
                     /db_xref="taxon:1410664"
WGS         JHWX01000001-JHWX01000032
WGS_SCAFLD  NZ_JHWX01000007
WGS_SCAFLD  NZ_JHWX01000012-NZ_JHWX01000018
WGS_SCAFLD  NZ_JHWX01000021-NZ_JHWX01000032
WGS_SCAFLD  NZ_KK211375-NZ_KK211380
//
LOCUS       NZ_AQXV01000000      1686930 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanothermococcus thermolithotrophicus DSM 2095, whole genome
            shotgun sequencing project.
ACCESSION   NZ_AQXV00000000
VERSION     NZ_AQXV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02440415
            Assembly: GCF_000376965.1
KEYWORDS    WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanothermococcus thermolithotrophicus DSM 2095
  ORGANISM  Methanothermococcus thermolithotrophicus DSM 2095
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae;
            Methanothermococcus.
REFERENCE   1  (bases 1 to 1686930)
  AUTHORS   Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K.,
            Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A.,
            Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQXV00000000.1.
            The Methanothermococcus thermolithotrophicus DSM 2095 whole genome
            shotgun (WGS) project has the project accession NZ_AQXV00000000.
            This version of the project (01) has the accession number
            NZ_AQXV01000000, and consists of sequences
            AQXV01000001-AQXV01000055.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 406316
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Nikos  Kyrpides (nckyrpides@lbl.gov)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-PGF and JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            investigation_type       :: bacteria_archaea
            project_name             :: Methanothermococcus
                                        thermolithotrophicus DSM 2095
            collection_date          :: Missing
            lat_lon                  :: 40.827 14.076
            depth                    :: Missing
            alt_elev                 :: Missing
            country                  :: Italy
            num_replicons            :: Missing
            ref_biomaterial          :: DSM 2095
            biotic_relationship      :: Missing
            rel_to_oxygen            :: Anaerobe
            isol_growth_condt        :: Missing
            assembly                 :: Velvet v. 1.1.04; ALLPATHS v. r41043
            finishing_strategy       :: Missing
            environment              :: Aquatic; Marine; Sea sand; Sediment
            trophic_level            :: Lithotroph
            sequencing_meth          :: WGS
            GOLD Stamp ID            :: Gi11681
            Current Finishing Status :: Level 1: Standard Draft
            Type Strain              :: Yes
            Funding Program          :: DOE-CSP 2012
            Isolation Site           :: Geothermally heated sea sediments
            Cell Shape               :: Coccus-shaped
            Motility                 :: Motile
            Temperature Range        :: Thermophile
            Temperature Optimum      :: 65 C
            pH                       :: 6-8
            Gram Staining            :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.04; ALLPATHS v. r41043
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000376965.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:08:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,731
            CDSs (total)                      :: 1,690
            Genes (coding)                    :: 1,669
            CDSs (with protein)               :: 1,669
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 3 of 21
            Pseudo Genes (incomplete)         :: 16 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686930
                     /organism="Methanothermococcus thermolithotrophicus DSM
                     2095"
                     /mol_type="genomic DNA"
                     /strain="DSM 2095"
                     /culture_collection="DSM:2095"
                     /type_material="type strain of Methanococcus
                     thermolithotrophicus"
                     /db_xref="taxon:523845"
                     /geo_loc_name="Italy"
                     /lat_lon="40.827 N 14.076 E"
WGS         AQXV01000001-AQXV01000055
WGS_SCAFLD  NZ_AQXV01000001-NZ_AQXV01000055
//
LOCUS       NZ_JONQ01000000      1511083 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methermicoccus shengliensis DSM 18856, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JONQ00000000
VERSION     NZ_JONQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02746094
            Assembly: GCF_000711905.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methermicoccus shengliensis DSM 18856
  ORGANISM  Methermicoccus shengliensis DSM 18856
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methermicoccaceae;
            Methermicoccus.
REFERENCE   1  (bases 1 to 1511083)
  AUTHORS   Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K.,
            Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A.,
            Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JONQ00000000.1.
            The Methermicoccus shengliensis DSM 18856 whole genome shotgun
            (WGS) project has the project accession NZ_JONQ00000000.  This
            version of the project (01) has the accession number
            NZ_JONQ01000000, and consists of sequences
            JONQ01000001-JONQ01000017.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1030914
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Nikos   Kyrpides (nckyrpides@lbl.gov)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI
            Annotation by JGI
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            country             :: China
            depth               :: 1680-1800&#8197;m
            environment         :: Aquatic; Oil fields
            investigation_type  :: bacteria_archaea
            isol_growth_condt   :: 18048758
            project_name        :: Methermicoccus shengliensis DSM 18856
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 18856
            rel_to_oxygen       :: Anaerobe
            finishing_strategy  :: Level 1: Standard Draft
            GOLD Stamp ID       :: Gi11682
            Type Strain         :: Yes
            Funding Program     :: DOE-CSP 2012
            Gene Calling Method :: Prodigal 2.5
            Isolation Site      :: Oil-production water
            Cell Shape          :: Coccus-shaped
            Motility            :: Motile
            Temperature Range   :: Thermophile
            Temperature Optimum :: 65 C
            pH                  :: 5.5-8.0
            Gram Staining       :: Gram+
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before 2014-04-08
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000711905.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:10:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,688
            CDSs (total)                      :: 1,636
            Genes (coding)                    :: 1,625
            CDSs (with protein)               :: 1,625
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511083
                     /organism="Methermicoccus shengliensis DSM 18856"
                     /mol_type="genomic DNA"
                     /strain="DSM 18856"
                     /culture_collection="DSM:18856"
                     /type_material="type strain of Methermicoccus
                     shengliensis"
                     /db_xref="taxon:1122233"
                     /geo_loc_name="China: Shengli oilfield"
WGS         JONQ01000001-JONQ01000017
WGS_SCAFLD  NZ_JONQ01000001-NZ_JONQ01000008
WGS_SCAFLD  NZ_JONQ01000011-NZ_JONQ01000015
WGS_SCAFLD  NZ_KL543983-NZ_KL543984
//
LOCUS       NZ_AOIE01000000      4264455 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema pellirubrum DSM 15624, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIE00000000
VERSION     NZ_AOIE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471626
            Assembly: GCF_000337635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema pellirubrum DSM 15624
  ORGANISM  Natrinema pellirubrum DSM 15624
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4264455)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4264455)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIE00000000.1.
            The Natrinema pellirubrum DSM 15624 whole genome shotgun (WGS)
            project has the project accession NZ_AOIE00000000.  This version of
            the project (01) has the accession number NZ_AOIE01000000, and
            consists of sequences AOIE01000001-AOIE01000134.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337635.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:50:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,334
            CDSs (total)                      :: 4,276
            Genes (coding)                    :: 4,079
            CDSs (with protein)               :: 4,079
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 197
            CDSs (without protein)            :: 197
            Pseudo Genes (ambiguous residues) :: 2 of 197
            Pseudo Genes (frameshifted)       :: 77 of 197
            Pseudo Genes (incomplete)         :: 129 of 197
            Pseudo Genes (internal stop)      :: 26 of 197
            Pseudo Genes (multiple problems)  :: 33 of 197
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4264455
                     /organism="Natrinema pellirubrum DSM 15624"
                     /mol_type="genomic DNA"
                     /strain="DSM 15624"
                     /culture_collection="DSM:15624"
                     /type_material="type strain of Natrinema pellirubrum"
                     /db_xref="taxon:797303"
WGS         AOIE01000001-AOIE01000134
WGS_SCAFLD  NZ_AOIE01000001-NZ_AOIE01000134
//
LOCUS       NZ_JOMF01000000      1711791 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanomicrobium mobile BP, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JOMF00000000
VERSION     NZ_JOMF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02745537
            Assembly: GCF_000711215.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanomicrobium mobile BP
  ORGANISM  Methanomicrobium mobile BP
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanomicrobium.
REFERENCE   1  (bases 1 to 1711791)
  AUTHORS   Kelly,W., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JOMF00000000.1.
            The Methanomicrobium mobile BP whole genome shotgun (WGS) project
            has the project accession NZ_JOMF00000000.  This version of the
            project (01) has the accession number NZ_JOMF01000000, and consists
            of sequences JOMF01000001-JOMF01000012.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1026104
            Source DNA and Organism available from William Kelly
            (bill.kelly@agresearch.co.nz)
            Source DNA available from William Kelly
            (bill.kelly@agresearch.co.nz)
            Organism available from William Kelly (bill.kelly@agresearch.co.nz)
            Contacts: William Kelly (bill.kelly@agresearch.co.nz)
               Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            country             :: USA
            environment         :: Bovine rumen; Host; Bovine; Rumen
            investigation_type  :: bacteria_archaea
            project_name        :: Methanomicrobium mobile BP, DSM 1539
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 1539
            biotic_relationship :: Free living
            rel_to_oxygen       :: Anaerobe
            GOLD Stamp ID       :: Gi0054486
            Type Strain         :: Yes
            Gene Calling Method :: Prodigal 2.5
            Isolation Site      :: Bovine rumen
            Host Name           :: Bovine
            Cell Shape          :: Rod-shaped
            Motility            :: Motile
            Sporulation         :: Nonsporulating
            Temperature Range   :: Mesophile
            Temperature Optimum :: 37
            pH                  :: 6.1
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before 2014-04-21
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000711215.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:13:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,679
            CDSs (total)                      :: 1,621
            Genes (coding)                    :: 1,617
            CDSs (with protein)               :: 1,617
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 0 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711791
                     /organism="Methanomicrobium mobile BP"
                     /mol_type="genomic DNA"
                     /strain="BP"
                     /culture_collection="DSM:1539"
                     /type_material="type strain of Methanomicrobium mobile"
                     /db_xref="taxon:694440"
                     /geo_loc_name="USA"
WGS         JOMF01000001-JOMF01000012
WGS_SCAFLD  NZ_JOMF01000001-NZ_JOMF01000012
//
LOCUS       NZ_AOID01000000      4190799 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema versiforme JCM 10478, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOID00000000
VERSION     NZ_AOID00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471670
            Assembly: GCF_000337195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema versiforme JCM 10478
  ORGANISM  Natrinema versiforme JCM 10478
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4190799)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4190799)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOID00000000.1.
            The Natrinema versiforme JCM 10478 whole genome shotgun (WGS)
            project has the project accession NZ_AOID00000000.  This version of
            the project (01) has the accession number NZ_AOID01000000, and
            consists of sequences AOID01000001-AOID01000072.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337195.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:53:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,297
            CDSs (total)                      :: 4,239
            Genes (coding)                    :: 4,087
            CDSs (with protein)               :: 4,087
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 4, 2 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 77 of 152
            Pseudo Genes (incomplete)         :: 94 of 152
            Pseudo Genes (internal stop)      :: 34 of 152
            Pseudo Genes (multiple problems)  :: 48 of 152
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4190799
                     /organism="Natrinema versiforme JCM 10478"
                     /mol_type="genomic DNA"
                     /strain="JCM 10478"
                     /culture_collection="JCM:10478"
                     /type_material="type strain of Natrinema versiforme"
                     /db_xref="taxon:1227496"
WGS         AOID01000001-AOID01000072
WGS_SCAFLD  NZ_AOID01000001-NZ_AOID01000072
//
LOCUS       NZ_ATXS01000000      3591480 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum ezzemoulense DSM 17463, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ATXS00000000
VERSION     NZ_ATXS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02441569
            Assembly: GCF_000421805.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Halorubrum ezzemoulense DSM 17463
  ORGANISM  Halorubrum ezzemoulense DSM 17463
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3591480)
  AUTHORS   Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K.,
            Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A.,
            Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ATXS00000000.1.
            The Halorubrum ezzemoulense DSM 17463 whole genome shotgun (WGS)
            project has the project accession NZ_ATXS00000000.  This version of
            the project (01) has the accession number NZ_ATXS01000000, and
            consists of sequences ATXS01000001-ATXS01000096.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1013726
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Nikos   Kyrpides (nckyrpides@lbl.gov)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI
            Annotation by JGI
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            environment         :: Aquatic; Salinewater
            investigation_type  :: bacteria_archaea
            isol_growth_condt   :: 16825633
            project_name        :: Halorubrum ezzemoulense DSM 17463
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 17463
            rel_to_oxygen       :: Aerobe
            finishing_strategy  :: Level 1: Standard Draft
            trophic_level       :: Chemoorganotroph
            GOLD Stamp ID       :: Gi11555
            Type Strain         :: Yes
            Funding Program     :: DOE-CSP 2012
            Isolation Site      :: water sample
            Cell Shape          :: Pleomorphic-shaped
            Motility            :: Motile
            Temperature Range   :: Thermotolerant
            Temperature Optimum :: 37-40 C
            Salinity            :: Halophile
            pH                  :: 7.0-7.5
            Gram Staining       :: Gram-
            Phenotypes          :: Neutrophilic; Catalase positive
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before 2013-05-07
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000421805.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:10:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,674
            CDSs (total)                      :: 3,608
            Genes (coding)                    :: 3,447
            CDSs (with protein)               :: 3,447
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 30 of 161
            Pseudo Genes (incomplete)         :: 125 of 161
            Pseudo Genes (internal stop)      :: 32 of 161
            Pseudo Genes (multiple problems)  :: 23 of 161
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591480
                     /organism="Halorubrum ezzemoulense DSM 17463"
                     /mol_type="genomic DNA"
                     /strain="DSM 17463"
                     /culture_collection="DSM:17463"
                     /type_material="type strain of Halorubrum ezzemoulense"
                     /db_xref="taxon:1121945"
WGS         ATXS01000001-ATXS01000096
WGS_SCAFLD  NZ_ATXS01000001-NZ_ATXS01000096
//
LOCUS       NZ_CAJE01000000      2620233 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanomassiliicoccus luminyensis B10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJE00000000
VERSION     NZ_CAJE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138426
            Assembly: GCF_000308215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomassiliicoccus luminyensis B10
  ORGANISM  Methanomassiliicoccus luminyensis B10
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1
  AUTHORS   Gorlas,A., Robert,C., Gimenez,G., Drancourt,M. and Raoult,D.
  TITLE     Complete genome sequence of Methanomassiliicoccus luminyensis, the
            largest genome of a human-associated Archaea species
  JOURNAL   J Bacteriol 194 (17), 4745 (2012)
   PUBMED   22887657
REFERENCE   2  (bases 1 to 2620233)
  AUTHORS   GENOMES,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAY-2012) Fac de medecine, URMITE, 27 Bd J Moulin,
            13385 Marseille Cedex 05, 13385, FRANCE
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJE00000000.1.
            The Methanomassiliicoccus luminyensis B10 whole genome shotgun
            (WGS) project has the project accession NZ_CAJE00000000.  This
            version of the project (01) has the accession number
            NZ_CAJE01000000, and consists of sequences
            CAJE01000001-CAJE01000026.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000308215.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:13:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,669
            CDSs (total)                      :: 2,616
            Genes (coding)                    :: 2,585
            CDSs (with protein)               :: 2,585
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 21 of 31
            Pseudo Genes (internal stop)      :: 7 of 31
            Pseudo Genes (multiple problems)  :: 1 of 31
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620233
                     /organism="Methanomassiliicoccus luminyensis B10"
                     /mol_type="genomic DNA"
                     /strain="B10"
                     /type_material="type strain of Methanomassiliicoccus
                     luminyensis"
                     /db_xref="taxon:1175296"
WGS         CAJE01000001-CAJE01000026
WGS_SCAFLD  NZ_CAJE01000001-NZ_CAJE01000026
//
LOCUS       NZ_JMIO01000000      2542436 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanoculleus sp. MH98A, whole genome shotgun sequencing project.
ACCESSION   NZ_JMIO00000000
VERSION     NZ_JMIO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02738432
            Assembly: GCF_000691865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus sp. MH98A
  ORGANISM  Methanoculleus sp. MH98A
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2542436)
  AUTHORS   Dabir,A.P., Honkalas,V.S., Arora,P., Ranade,D.R. and
            Dhakephalkar,P.K.
  TITLE     Draft genome of Methanoculleus sp. 98A isolated from sediments
            associated with methane hydrate from Krishna Godavari basin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2542436)
  AUTHORS   Dabir,A.P., Honkalas,V.S., Arora,P., Ranade,D.R. and
            Dhakephalkar,P.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2014) Microbial Sciences Division, Agharkar
            Research Institute, G.G Agarkar Road, Pune, Maharastra 411004,
            India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JMIO00000000.1.
            The Methanoculleus sp. MH98A whole genome shotgun (WGS) project has
            the project accession NZ_JMIO00000000.  This version of the project
            (01) has the accession number NZ_JMIO01000000, and consists of
            sequences JMIO01000001-JMIO01000306.
            Bacteria and source DNA available from: Dr P K Dhakephalkar,
            Microbial Sciences Division, Agharkar Research Institute, G.G
            Agarkar Road, Pune, Maharastra 411004, India.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 25-APR-2014
            Assembly Method        :: MIRA v. 4.0.2
            Assembly Name          :: MethMaris1.0
            Expected Final Version :: No
            Genome Coverage        :: 46.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000691865.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:12:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,822
            CDSs (total)                      :: 2,765
            Genes (coding)                    :: 2,639
            CDSs (with protein)               :: 2,639
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 50 of 126
            Pseudo Genes (incomplete)         :: 75 of 126
            Pseudo Genes (internal stop)      :: 1 of 126
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542436
                     /organism="Methanoculleus sp. MH98A"
                     /mol_type="genomic DNA"
                     /strain="MH98A"
                     /isolation_source="sediment associated with methane
                     hydrate from Krishna Godavari Basin"
                     /db_xref="taxon:1495314"
                     /geo_loc_name="India: Krishna Godavari Basin"
                     /collection_date="2006-08"
                     /collected_by="Dr P K Dhakephalkar"
                     /identified_by="Dr P K Dhakephalkar"
WGS         JMIO01000001-JMIO01000306
WGS_SCAFLD  NZ_JMIO01000001-NZ_JMIO01000306
//
LOCUS       NZ_AOIC01000000      3694030 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronobacterium gregoryi SP2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIC00000000
VERSION     NZ_AOIC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471625
            Assembly: GCF_000337655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronobacterium gregoryi SP2
  ORGANISM  Natronobacterium gregoryi SP2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronobacterium.
REFERENCE   1  (bases 1 to 3694030)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3694030)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIC00000000.1.
            The Natronobacterium gregoryi SP2 whole genome shotgun (WGS)
            project has the project accession NZ_AOIC00000000.  This version of
            the project (01) has the accession number NZ_AOIC01000000, and
            consists of sequences AOIC01000001-AOIC01000128.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337655.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:47:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,725
            CDSs (total)                      :: 3,674
            Genes (coding)                    :: 3,513
            CDSs (with protein)               :: 3,513
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 61 of 161
            Pseudo Genes (incomplete)         :: 107 of 161
            Pseudo Genes (internal stop)      :: 29 of 161
            Pseudo Genes (multiple problems)  :: 34 of 161
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3694030
                     /organism="Natronobacterium gregoryi SP2"
                     /mol_type="genomic DNA"
                     /strain="SP2"
                     /culture_collection="DSM:3393"
                     /type_material="type strain of Natronobacterium gregoryi"
                     /db_xref="taxon:797304"
WGS         AOIC01000001-AOIC01000128
WGS_SCAFLD  NZ_AOIC01000001-NZ_AOIC01000128
//
LOCUS       NZ_AOIP01000000      4618362 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrialba aegyptia DSM 13077, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOIP00000000
VERSION     NZ_AOIP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471628
            Assembly: GCF_000337535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba aegyptia DSM 13077
  ORGANISM  Natrialba aegyptia DSM 13077
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4618362)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4618362)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOIP00000000.1.
            The Natrialba aegyptia DSM 13077 whole genome shotgun (WGS) project
            has the project accession NZ_AOIP00000000.  This version of the
            project (01) has the accession number NZ_AOIP01000000, and consists
            of sequences AOIP01000001-AOIP01000066.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337535.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:54:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,553
            CDSs (total)                      :: 4,490
            Genes (coding)                    :: 4,308
            CDSs (with protein)               :: 4,308
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 5, 4 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 77 of 182
            Pseudo Genes (incomplete)         :: 121 of 182
            Pseudo Genes (internal stop)      :: 48 of 182
            Pseudo Genes (multiple problems)  :: 53 of 182
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4618362
                     /organism="Natrialba aegyptia DSM 13077"
                     /mol_type="genomic DNA"
                     /strain="DSM 13077"
                     /culture_collection="DSM:13077"
                     /type_material="type strain of Natrialba aegyptia"
                     /db_xref="taxon:1227491"
WGS         AOIP01000001-AOIP01000066
WGS_SCAFLD  NZ_AOIP01000001-NZ_AOIP01000066
//
LOCUS       NZ_AOHW01000000      4926841 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronorubrum tibetense GA33, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOHW00000000
VERSION     NZ_AOHW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471668
            Assembly: GCF_000337235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum tibetense GA33
  ORGANISM  Natronorubrum tibetense GA33
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4926841)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4926841)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOHW00000000.1.
            The Natronorubrum tibetense GA33 whole genome shotgun (WGS) project
            has the project accession NZ_AOHW00000000.  This version of the
            project (01) has the accession number NZ_AOHW01000000, and consists
            of sequences AOHW01000001-AOHW01000059.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337235.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:56:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,780
            CDSs (total)                      :: 4,720
            Genes (coding)                    :: 4,567
            CDSs (with protein)               :: 4,567
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 4 (5S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 54 of 153
            Pseudo Genes (incomplete)         :: 106 of 153
            Pseudo Genes (internal stop)      :: 32 of 153
            Pseudo Genes (multiple problems)  :: 34 of 153
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4926841
                     /organism="Natronorubrum tibetense GA33"
                     /mol_type="genomic DNA"
                     /strain="GA33"
                     /culture_collection="JCM:10636"
                     /type_material="type strain of Natronorubrum tibetense"
                     /db_xref="taxon:1114856"
WGS         AOHW01000001-AOHW01000059
WGS_SCAFLD  NZ_AOHW01000001-NZ_AOHW01000059
//
LOCUS       NZ_AXDV01000000      2785552 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanolacinia paynteri strain DSM 2545, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AXDV00000000
VERSION     NZ_AXDV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03196739
            Assembly: GCF_000784355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolacinia paynteri
  ORGANISM  Methanolacinia paynteri
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanolacinia.
REFERENCE   1  (bases 1 to 2785552)
  AUTHORS   Fiebig,A., Goeker,M. and Klenk,H.-P.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2013) Microbiology, DSMZ German Collection of
            Microorganisms and Cell Cultures, Inhoffenstr. 7b, Braunschweig,
            Lower Saxony 38124, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AXDV00000000.1.
            The Methanolacinia paynteri whole genome shotgun (WGS) project has
            the project accession NZ_AXDV00000000.  This version of the project
            (01) has the accession number NZ_AXDV01000000, and consists of
            sequences AXDV01000001-AXDV01000098.
            Bacteria available from DSMZ German Collection of Microorganisms
            and Cell Cultures.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.0.18
            Assembly Name         :: Metpay
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000784355.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:48:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,827
            CDSs (total)                      :: 2,771
            Genes (coding)                    :: 2,729
            CDSs (with protein)               :: 2,729
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 1 of 42
            Pseudo Genes (incomplete)         :: 42 of 42
            Pseudo Genes (internal stop)      :: 0 of 42
            Pseudo Genes (multiple problems)  :: 1 of 42
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2785552
                     /organism="Methanolacinia paynteri"
                     /mol_type="genomic DNA"
                     /strain="DSM 2545"
                     /culture_collection="DSM:2545"
                     /type_material="type strain of Methanolacinia paynteri"
                     /db_xref="taxon:230356"
WGS         AXDV01000001-AXDV01000098
WGS_SCAFLD  NZ_AXDV01000001-NZ_AXDV01000005
WGS_SCAFLD  NZ_AXDV01000011-NZ_AXDV01000013
WGS_SCAFLD  NZ_AXDV01000017
WGS_SCAFLD  NZ_AXDV01000027-NZ_AXDV01000028
WGS_SCAFLD  NZ_AXDV01000036
WGS_SCAFLD  NZ_AXDV01000044-NZ_AXDV01000046
WGS_SCAFLD  NZ_AXDV01000055-NZ_AXDV01000056
WGS_SCAFLD  NZ_AXDV01000074
WGS_SCAFLD  NZ_AXDV01000085-NZ_AXDV01000087
WGS_SCAFLD  NZ_AXDV01000091-NZ_AXDV01000092
WGS_SCAFLD  NZ_AXDV01000097-NZ_AXDV01000098
WGS_SCAFLD  NZ_KN360925-NZ_KN360945
//
LOCUS       NZ_BBJP01000000      3677984 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Halorubrum halophilum strain B8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBJP00000000
VERSION     NZ_BBJP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00018745
            Assembly: GCF_000739595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum halophilum
  ORGANISM  Halorubrum halophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequences of Halorubrum halophilum B8
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3677984)
  AUTHORS   Roh,S.W. and Rhee,J.-K.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2014) Contact:Seong Woon Roh Korea Basic Science
            Institute, Jeju Center; Cheomdan-ro 213-3, Jeju-si, Jeju-do
            690-140, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBJP00000000.1.
            The Halorubrum halophilum whole genome shotgun (WGS) project has
            the project accession NZ_BBJP00000000.  This version of the project
            (01) has the accession number NZ_BBJP01000000, and consists of
            sequences BBJP01000001-BBJP01000103.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC De novo assembly v. 7.0.4
            Genome Coverage       :: 570x
            Sequencing Technology :: MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000739595.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:48:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,715
            CDSs (total)                      :: 3,648
            Genes (coding)                    :: 3,533
            CDSs (with protein)               :: 3,533
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 3 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 31 of 115
            Pseudo Genes (incomplete)         :: 91 of 115
            Pseudo Genes (internal stop)      :: 14 of 115
            Pseudo Genes (multiple problems)  :: 16 of 115
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677984
                     /organism="Halorubrum halophilum"
                     /mol_type="genomic DNA"
                     /strain="B8"
                     /type_material="type strain of Halorubrum halophilum"
                     /db_xref="taxon:413816"
WGS         BBJP01000001-BBJP01000103
WGS_SCAFLD  NZ_BBJP01000001-NZ_BBJP01000103
//
LOCUS       NZ_JQLY01000000      2490725 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobacterium sp. SMA-27, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JQLY00000000
VERSION     NZ_JQLY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02745846
            Assembly: GCF_000744455.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanobacterium sp. SMA-27
  ORGANISM  Methanobacterium sp. SMA-27
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2490725)
  AUTHORS   Bakermans,C., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQLY00000000.1.
            The Methanobacterium sp. SMA-27 whole genome shotgun (WGS) project
            has the project accession NZ_JQLY00000000.  This version of the
            project (01) has the accession number NZ_JQLY01000000, and consists
            of sequence JQLY01000001.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1015706
            Source DNA and Organism available from Corien Bakermans
            (cub21@psu.edu)
            Source DNA available from Corien Bakermans (cub21@psu.edu)
            Organism available from Corien Bakermans (cub21@psu.edu)
            Contacts: Corien Bakermans (cub21@psu.edu)
               Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Methanobacterium sp. SMA-27
            sequencing_meth     :: WGS
            finishing_strategy  :: Level 3: Improved-High-Quality Draft
            GOLD Stamp ID       :: Gi22476
            Gene Calling Method :: Prodigal 2.5
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before Fri Aug 15
                                        11:29:03 PDT 2014
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000; PacBio RS
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000744455.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:48:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,675
            CDSs (total)                      :: 2,626
            Genes (coding)                    :: 2,591
            CDSs (with protein)               :: 2,591
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 13 of 35
            Pseudo Genes (incomplete)         :: 18 of 35
            Pseudo Genes (internal stop)      :: 6 of 35
            Pseudo Genes (multiple problems)  :: 2 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490725
                     /organism="Methanobacterium sp. SMA-27"
                     /mol_type="genomic DNA"
                     /strain="SMA-27"
                     /db_xref="taxon:1495336"
WGS         JQLY01000001
WGS_SCAFLD  NZ_JQLY01000001
//
LOCUS       NZ_ARPH01000000      4934341 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natronorubrum tibetense GA33, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ARPH00000000
VERSION     NZ_ARPH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02261315
            Assembly: GCF_000383975.1
KEYWORDS    WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Natronorubrum tibetense GA33
  ORGANISM  Natronorubrum tibetense GA33
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4934341)
  AUTHORS   Anderson,I., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ARPH00000000.1.
            The Natronorubrum tibetense GA33 whole genome shotgun (WGS) project
            has the project accession NZ_ARPH00000000.  This version of the
            project (01) has the accession number NZ_ARPH01000000, and consists
            of sequences ARPH01000001-ARPH01000010.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 404529
            Source DNA and Organism available from Iain  Anderson
            (IJAnderson@lbl.gov)
            Source DNA available from Iain  Anderson (IJAnderson@lbl.gov)
            Organism available from Iain  Anderson (IJAnderson@lbl.gov)
            Contacts: Iain  Anderson (IJAnderson@lbl.gov)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            investigation_type       :: bacteria_archaea
            project_name             :: Natronorubrum tibetense DSM 13204
            collection_date          :: Missing
            lat_lon                  :: 31.911 79.173
            depth                    :: Missing
            alt_elev                 :: Missing
            country                  :: China
            num_replicons            :: Missing
            ref_biomaterial          :: DSM 13204, JCM 10636
            biotic_relationship      :: Free living
            rel_to_oxygen            :: Obligate aerobe
            isol_growth_condt        :: 10028271
            assembly                 :: Velvet v. 1.1.05; ALLPATHS v. 39750;
                                        Phrap v. 4.24
            finishing_strategy       :: Missing
            environment              :: Fresh water; Aquatic; Sediment
            trophic_level            :: Chemoorganotroph
            sequencing_meth          :: WGS
            GOLD Stamp ID            :: Gi09602
            Current Finishing Status :: Level 3: Improved-High-Quality Draft
            Type Strain              :: Yes
            Funding Program          :: DOE-CSP 2010
            Number of Reads          :: 18011258 (Std PE), 36622486 (CLP PE)
            Isolation Site           :: Sediment of the Bange salt-alkaline
                                        lake in Tibet
            Cell Shape               :: Pleomorphic-shaped
            Motility                 :: Nonmotile
            Temperature Range        :: Mesophile
            Salinity                 :: Halophile
            pH                       :: 9.0 - 9.5
            Gram Staining            :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.05; ALLPATHS v. 39750;
                                        Phrap v. 4.24
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000 (CLIP PE); Illumina
                                        HiSeq 2000 (Std PE)
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000383975.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:05:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,745
            CDSs (total)                      :: 4,686
            Genes (coding)                    :: 4,582
            CDSs (with protein)               :: 4,582
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 3 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 39 of 104
            Pseudo Genes (incomplete)         :: 72 of 104
            Pseudo Genes (internal stop)      :: 30 of 104
            Pseudo Genes (multiple problems)  :: 32 of 104
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934341
                     /organism="Natronorubrum tibetense GA33"
                     /mol_type="genomic DNA"
                     /strain="GA33"
                     /isolation_source="Sediment of the Bange salt-alkaline
                     lake in Tibet"
                     /culture_collection="DSM:13204"
                     /type_material="type strain of Natronorubrum tibetense"
                     /db_xref="taxon:1114856"
                     /geo_loc_name="China"
                     /lat_lon="31.911 N 79.173 E"
WGS         ARPH01000001-ARPH01000010
WGS_SCAFLD  NZ_KB913017-NZ_KB913021
//
LOCUS       NZ_JQLR01000000      4064496 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina soligelidi strain SMA-21, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQLR00000000
VERSION     NZ_JQLR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02745719
            Assembly: GCF_000744315.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanosarcina soligelidi
  ORGANISM  Methanosarcina soligelidi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4064496)
  AUTHORS   Alawi,M., Shapiro,N., Woyke,T., Horn,F., Bakermans,C. and Wagner,D.
  TITLE     Genome Sequence of Methanosarcina soligelidi SMA-21, Isolated from
            Siberian Permafrost-Affected Soil
  JOURNAL   Genome Announc 3 (2), e00270-15 (2015)
   PUBMED   25908125
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064496)
  AUTHORS   Bakermans,C., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQLR00000000.1.
            The Methanosarcina soligelidi whole genome shotgun (WGS) project
            has the project accession NZ_JQLR00000000.  This version of the
            project (01) has the accession number NZ_JQLR01000000, and consists
            of sequence JQLR01000001.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1015739
            Source DNA and Organism available from Corien   Bakermans
            (cub21@psu.edu)
            Source DNA available from Corien   Bakermans (cub21@psu.edu)
            Organism available from Corien   Bakermans (cub21@psu.edu)
            Contacts: Corien   Bakermans (cub21@psu.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Methanosarcina sp. SMA-21
            sequencing_meth     :: WGS
            finishing_strategy  :: Level 3: Improved-High-Quality Draft
            GOLD Stamp ID       :: Gi22369
            Gene Calling Method :: Prodigal 2.5
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before Fri Aug 15
                                        11:30:48 PDT 2014
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000; PacBio RS;
                                        Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000744315.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:48:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,482
            CDSs (total)                      :: 3,413
            Genes (coding)                    :: 3,327
            CDSs (with protein)               :: 3,327
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 33 of 86
            Pseudo Genes (incomplete)         :: 23 of 86
            Pseudo Genes (internal stop)      :: 41 of 86
            Pseudo Genes (multiple problems)  :: 10 of 86
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064496
                     /organism="Methanosarcina soligelidi"
                     /mol_type="genomic DNA"
                     /strain="SMA-21"
                     /type_material="type strain of Methanosarcina soligelidi"
                     /db_xref="taxon:1036677"
WGS         JQLR01000001
WGS_SCAFLD  NZ_JQLR01000001
//
LOCUS       NZ_JQKN01000000      3392252 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobacterium arcticum strain M2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQKN00000000
VERSION     NZ_JQKN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02910397
            Assembly: GCF_000746075.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanobacterium arcticum
  ORGANISM  Methanobacterium arcticum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 3392252)
  AUTHORS   Cadillo-quiroz,H., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQKN00000000.1.
            The Methanobacterium arcticum whole genome shotgun (WGS) project
            has the project accession NZ_JQKN00000000.  This version of the
            project (01) has the accession number NZ_JQKN01000000, and consists
            of sequences JQKN01000001-JQKN01000038.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1022133
            Source DNA and Organism available from Hinsby Cadillo-Quiroz
            (hinsby@gmail.com)
            Source DNA available from Hinsby Cadillo-Quiroz (hinsby@gmail.com)
            Organism available from Hinsby Cadillo-Quiroz (hinsby@gmail.com)
            Contacts: Hinsby Cadillo-Quiroz (hinsby@gmail.com)
               Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            country             :: Russia
            investigation_type  :: bacteria_archaea
            lat_lon             :: 70.100000 154.066667
            project_name        :: Methanobacterium arcticum M2, DSM 19844
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 19844
            finishing_strategy  :: Level 3: Improved-High-Quality Draft
            GOLD Stamp ID       :: Gi0049217
            Gene Calling Method :: Prodigal 2.5
            Isolation Site      :: Holocene permafrost sediments
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before Fri Aug 15
                                        11:11:59 PDT 2014
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000; PacBio RS
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000746075.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:48:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,380
            CDSs (total)                      :: 3,332
            Genes (coding)                    :: 3,314
            CDSs (with protein)               :: 3,314
            Genes (RNA)                       :: 48
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 1 of 18
            Pseudo Genes (incomplete)         :: 15 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3392252
                     /organism="Methanobacterium arcticum"
                     /mol_type="genomic DNA"
                     /strain="M2"
                     /culture_collection="DSM:19844"
                     /type_material="type strain of Methanobacterium arcticum"
                     /db_xref="taxon:386456"
                     /geo_loc_name="Russia: Kolyma Lowland"
WGS         JQKN01000001-JQKN01000038
WGS_SCAFLD  NZ_JQKN01000001-NZ_JQKN01000002
WGS_SCAFLD  NZ_JQKN01000008-NZ_JQKN01000038
WGS_SCAFLD  NZ_KN050802-NZ_KN050803
//
LOCUS       NZ_CCXV01000000      1718384 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobrevibacter smithii strain ACE6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CCXV00000000
VERSION     NZ_CCXV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2796325
            Assembly: GCF_000824705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Nkamga,V.D., Croce,O., Robert,C., Raoult,D. and Drancourt,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2014) URMITE, 27 Bd J Moulin, 13385 Marseille
            Cedex 05, France, 13385, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CCXV00000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CCXV00000000.  This version of the
            project (01) has the accession number NZ_CCXV01000000, and consists
            of sequences CCXV01000001-CCXV01000087.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000824705.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:50:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,734
            CDSs (total)                      :: 1,694
            Genes (coding)                    :: 1,637
            CDSs (with protein)               :: 1,637
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 12 of 57
            Pseudo Genes (incomplete)         :: 43 of 57
            Pseudo Genes (internal stop)      :: 7 of 57
            Pseudo Genes (multiple problems)  :: 4 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718384
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /strain="ACE6"
                     /db_xref="taxon:2173"
WGS         CCXV01000001-CCXV01000087
WGS_SCAFLD  NZ_CCXV01000001-NZ_CCXV01000087
//
LOCUS       NZ_JQJK01000000      3365256 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanobacterium veterum strain MK4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQJK00000000
VERSION     NZ_JQJK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02910304
            Assembly: GCF_000745485.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Methanobacterium veterum
  ORGANISM  Methanobacterium veterum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 3365256)
  AUTHORS   Cadillo-quiroz,H., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQJK00000000.1.
            The Methanobacterium veterum whole genome shotgun (WGS) project has
            the project accession NZ_JQJK00000000.  This version of the project
            (01) has the accession number NZ_JQJK01000000, and consists of
            sequences JQJK01000001-JQJK01000018.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1022136
            Source DNA and Organism available from Hinsby Cadillo-Quiroz
            (hinsby@gmail.com)
            Source DNA available from Hinsby Cadillo-Quiroz (hinsby@gmail.com)
            Organism available from Hinsby Cadillo-Quiroz (hinsby@gmail.com)
            Contacts: Hinsby Cadillo-Quiroz (hinsby@gmail.com)
               Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            country             :: Russia
            environment         :: Permafrost sediment
            investigation_type  :: bacteria_archaea
            lat_lon             :: 70.100000 154.066667
            project_name        :: Methanobacterium veterum MK4, DSM 19849
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 19849
            rel_to_oxygen       :: Anaerobe
            finishing_strategy  :: Level 3: Improved-High-Quality Draft
            GOLD Stamp ID       :: Gi0049218
            Gene Calling Method :: Prodigal 2.5
            Isolation Site      :: ancient (3 million years old) permafrost
                                   sediments
            Cell Shape          :: Rod-shaped
            Temperature Range   :: Psychrophile
            Temperature Optimum :: 28
            pH                  :: 7.0-7.2
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before Fri Aug 15
                                        11:29:35 PDT 2014
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina HiSeq 2000; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000745485.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:50:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,334
            CDSs (total)                      :: 3,286
            Genes (coding)                    :: 3,266
            CDSs (with protein)               :: 3,266
            Genes (RNA)                       :: 48
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 2 of 20
            Pseudo Genes (incomplete)         :: 14 of 20
            Pseudo Genes (internal stop)      :: 4 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365256
                     /organism="Methanobacterium veterum"
                     /mol_type="genomic DNA"
                     /strain="MK4"
                     /culture_collection="DSM:19849"
                     /type_material="type strain of Methanobacterium veterum"
                     /db_xref="taxon:408577"
                     /geo_loc_name="Russia: Kolyma Lowland"
WGS         JQJK01000001-JQJK01000018
WGS_SCAFLD  NZ_JQJK01000001-NZ_JQJK01000004
WGS_SCAFLD  NZ_JQJK01000008-NZ_JQJK01000009
WGS_SCAFLD  NZ_JQJK01000014-NZ_JQJK01000018
WGS_SCAFLD  NZ_KN050693-NZ_KN050694
//
LOCUS       NZ_AJVG01000000      3667624 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema sp. J7-1, whole genome shotgun sequencing project.
ACCESSION   NZ_AJVG00000000
VERSION     NZ_AJVG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02472127
            Assembly: GCF_000493245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema sp. J7-1
  ORGANISM  Natrinema sp. J7-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3667624)
  AUTHORS   Zhang,Z., Liu,Y., Shen,P. and Chen,X.
  TITLE     Genome sequences of haloarchaea Natrinema sp. J7-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3667624)
  AUTHORS   Zhang,Z., Liu,Y., Shen,P. and Chen,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2012) College of Life Sciences, Wuhan University,
            Luo-Jia-Shan, Wuhan, Hubei 430072, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AJVG00000000.1.
            The Natrinema sp. J7-1 whole genome shotgun (WGS) project has the
            project accession NZ_AJVG00000000.  This version of the project
            (01) has the accession number NZ_AJVG01000000, and consists of
            sequences AJVG01000001-AJVG01000042.
            Bacteria available from College of Life Sciences, Wuhan University,
            China.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.3
            Assembly Name         :: Nat_J71
            Genome Coverage       :: 250.0x
            Sequencing Technology :: 454; Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000493245.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:13:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,753
            CDSs (total)                      :: 3,698
            Genes (coding)                    :: 3,547
            CDSs (with protein)               :: 3,547
            Genes (RNA)                       :: 55
            rRNAs                             :: 4, 1 (5S, 16S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 46 of 151
            Pseudo Genes (incomplete)         :: 117 of 151
            Pseudo Genes (internal stop)      :: 25 of 151
            Pseudo Genes (multiple problems)  :: 32 of 151
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667624
                     /organism="Natrinema sp. J7-1"
                     /mol_type="genomic DNA"
                     /strain="J7-1"
                     /isolation_source="salt mine"
                     /db_xref="taxon:1172566"
                     /geo_loc_name="China: Yingcheng City, Hubei Province"
                     /collection_date="1995"
WGS         AJVG01000001-AJVG01000042
WGS_SCAFLD  NZ_AJVG01000001-NZ_AJVG01000042
//
LOCUS       NZ_JJPR01000000      4013698 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.A.2.6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPR00000000
VERSION     NZ_JJPR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708951
            Assembly: GCF_000979025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4013698)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4013698)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPR00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPR00000000.  This version of the project
            (01) has the accession number NZ_JJPR01000000, and consists of
            sequences JJPR01000001-JJPR01000167.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.8x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979025.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:10:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,479
            CDSs (total)                      :: 3,417
            Genes (coding)                    :: 3,343
            CDSs (with protein)               :: 3,343
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 19 of 74
            Pseudo Genes (incomplete)         :: 51 of 74
            Pseudo Genes (internal stop)      :: 18 of 74
            Pseudo Genes (multiple problems)  :: 12 of 74
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4013698
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.A.2.6"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPR01000001-JJPR01000167
WGS_SCAFLD  NZ_JJPR01000001-NZ_JJPR01000167
//
LOCUS       NZ_JJPF01000000      4067732 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.A.2.5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPF00000000
VERSION     NZ_JJPF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708945
            Assembly: GCF_000978935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4067732)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4067732)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPF00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPF00000000.  This version of the project
            (01) has the accession number NZ_JJPF01000000, and consists of
            sequences JJPF01000001-JJPF01000146.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.2x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000978935.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:14:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,524
            CDSs (total)                      :: 3,463
            Genes (coding)                    :: 3,394
            CDSs (with protein)               :: 3,394
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 21 of 69
            Pseudo Genes (incomplete)         :: 48 of 69
            Pseudo Genes (internal stop)      :: 13 of 69
            Pseudo Genes (multiple problems)  :: 11 of 69
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067732
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.A.2.5"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPF01000001-JJPF01000146
WGS_SCAFLD  NZ_JJPF01000001-NZ_JJPF01000146
//
LOCUS       NZ_JJPW01000000      4121852 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.M.1B.5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPW00000000
VERSION     NZ_JJPW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708954
            Assembly: GCF_000979045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4121852)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4121852)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPW00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPW00000000.  This version of the project
            (01) has the accession number NZ_JJPW01000000, and consists of
            sequences JJPW01000001-JJPW01000136.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.6x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979045.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:14:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,565
            CDSs (total)                      :: 3,502
            Genes (coding)                    :: 3,416
            CDSs (with protein)               :: 3,416
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 19 of 86
            Pseudo Genes (incomplete)         :: 61 of 86
            Pseudo Genes (internal stop)      :: 19 of 86
            Pseudo Genes (multiple problems)  :: 12 of 86
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4121852
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.M.1B.5"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPW01000001-JJPW01000136
WGS_SCAFLD  NZ_JJPW01000001-NZ_JJPW01000136
//
LOCUS       NZ_JJQE01000000      4072341 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.F.M.0.5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQE00000000
VERSION     NZ_JJQE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708967
            Assembly: GCF_000979125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4072341)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4072341)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQE00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQE00000000.  This version of the project
            (01) has the accession number NZ_JJQE01000000, and consists of
            sequences JJQE01000001-JJQE01000164.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979125.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:15:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,539
            CDSs (total)                      :: 3,477
            Genes (coding)                    :: 3,401
            CDSs (with protein)               :: 3,401
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 22 of 76
            Pseudo Genes (incomplete)         :: 53 of 76
            Pseudo Genes (internal stop)      :: 14 of 76
            Pseudo Genes (multiple problems)  :: 11 of 76
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4072341
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.F.M.0.5"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQE01000001-JJQE01000164
WGS_SCAFLD  NZ_JJQE01000001-NZ_JJQE01000164
//
LOCUS       NZ_JJPI01000000      4164309 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.T.1A.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPI00000000
VERSION     NZ_JJPI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708961
            Assembly: GCF_000978965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4164309)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4164309)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPI00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPI00000000.  This version of the project
            (01) has the accession number NZ_JJPI01000000, and consists of
            sequences JJPI01000001-JJPI01000156.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.2x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000978965.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:15:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,618
            CDSs (total)                      :: 3,555
            Genes (coding)                    :: 3,470
            CDSs (with protein)               :: 3,470
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 23 of 85
            Pseudo Genes (incomplete)         :: 61 of 85
            Pseudo Genes (internal stop)      :: 17 of 85
            Pseudo Genes (multiple problems)  :: 15 of 85
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4164309
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.T.1A.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPI01000001-JJPI01000156
WGS_SCAFLD  NZ_JJPI01000001-NZ_JJPI01000156
//
LOCUS       NZ_JJQM01000000      4091048 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.2.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQM00000000
VERSION     NZ_JJQM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708936
            Assembly: GCF_000979195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4091048)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4091048)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQM00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQM00000000.  This version of the project
            (01) has the accession number NZ_JJQM01000000, and consists of
            sequences JJQM01000001-JJQM01000171.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979195.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:17:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,529
            CDSs (total)                      :: 3,468
            Genes (coding)                    :: 3,386
            CDSs (with protein)               :: 3,386
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 20 of 82
            Pseudo Genes (incomplete)         :: 60 of 82
            Pseudo Genes (internal stop)      :: 19 of 82
            Pseudo Genes (multiple problems)  :: 14 of 82
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4091048
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.2.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQM01000001-JJQM01000171
WGS_SCAFLD  NZ_JJQM01000001-NZ_JJQM01000171
//
LOCUS       NZ_JJQO01000000      4232359 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.2.7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQO00000000
VERSION     NZ_JJQO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708937
            Assembly: GCF_000979205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4232359)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4232359)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQO00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQO00000000.  This version of the project
            (01) has the accession number NZ_JJQO01000000, and consists of
            sequences JJQO01000001-JJQO01000374.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 42.3x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979205.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:19:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,619
            CDSs (total)                      :: 3,559
            Genes (coding)                    :: 3,466
            CDSs (with protein)               :: 3,466
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 20 of 93
            Pseudo Genes (incomplete)         :: 70 of 93
            Pseudo Genes (internal stop)      :: 19 of 93
            Pseudo Genes (multiple problems)  :: 13 of 93
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4232359
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.2.7"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQO01000001-JJQO01000374
WGS_SCAFLD  NZ_JJQO01000001-NZ_JJQO01000374
//
LOCUS       NZ_LANF01000000      2206431 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Palaeococcus ferrophilus DSM 13482, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LANF00000000
VERSION     NZ_LANF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02744072
            Assembly: GCF_000966265.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Palaeococcus ferrophilus DSM 13482
  ORGANISM  Palaeococcus ferrophilus DSM 13482
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Palaeococcus.
REFERENCE   1  (bases 1 to 2206431)
  AUTHORS   Eisen,J., Huntemann,M., Chen,I.-M., Kyrpides,N., Markowitz,V.,
            Palaniappan,K., Ivanova,N., Andersen,E., Pati,A., Shapiro,N.,
            Cantor,M.N., Woyke,T., Copeland,A., Mikhailova,N., Ovchinnikova,G.,
            Stamatis,D., Reddy,T., Ngan,C.Y., Chovatia,M., Daum,C. and Clum,A.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2015) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LANF00000000.1.
            The Palaeococcus ferrophilus DSM 13482 whole genome shotgun (WGS)
            project has the project accession NZ_LANF00000000.  This version of
            the project (01) has the accession number NZ_LANF01000000, and
            consists of sequences LANF01000001-LANF01000023.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 97928
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan  Eisen (jaeisen@ucdavis.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI
            Annotation by JGI
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            country             :: Japan
            depth               :: 1338 meters
            environment         :: Aquatic; Deep sea; Marine
            investigation_type  :: bacteria_archaea
            project_name        :: Palaeococcus ferrophilus DMJ, DSM 13482
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 13482
            biotic_relationship :: Free living
            rel_to_oxygen       :: Anaerobe
            trophic_level       :: Chemoorganotroph
            GOLD Stamp ID       :: Gp0003710
            Type Strain         :: Yes
            Funding Program     :: DOE-GEBA 2007
            Gene Calling Method :: Prodigal unknown
            Isolation Site      :: deep-sea hydrothermal vent chimney at the
                                   Myojin Knoll in the Ogasawara-Bonin Arc,
                                   Japan
            Cell Shape          :: Coccus-shaped
            Motility            :: Motile
            Temperature Range   :: Hyperthermophile
            Temperature Optimum :: 83
            pH                  :: 6.0
            Gram Staining       :: Gram-
            Diseases            :: None
            Phenotypes          :: Barophile
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before 2009-01-12
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Unknown
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000966265.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:57:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,413
            CDSs (total)                      :: 2,358
            Genes (coding)                    :: 2,313
            CDSs (with protein)               :: 2,313
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 14 of 45
            Pseudo Genes (incomplete)         :: 34 of 45
            Pseudo Genes (internal stop)      :: 1 of 45
            Pseudo Genes (multiple problems)  :: 3 of 45
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206431
                     /organism="Palaeococcus ferrophilus DSM 13482"
                     /mol_type="genomic DNA"
                     /strain="DSM 13482"
                     /culture_collection="DSM:13482"
                     /type_material="type strain of Palaeococcus ferrophilus"
                     /db_xref="taxon:588319"
                     /geo_loc_name="Japan: deep-sea hydrothermal vent chimney
                     at the Myojin Knoll in the Ogasawara-Bonin Arc"
WGS         LANF01000001-LANF01000023
WGS_SCAFLD  NZ_LANF01000001-NZ_LANF01000023
//
LOCUS       NZ_JJPE01000000      4078713 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.A.2.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPE00000000
VERSION     NZ_JJPE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708976
            Assembly: GCF_000979555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4078713)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4078713)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPE00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPE00000000.  This version of the project
            (01) has the accession number NZ_JJPE01000000, and consists of
            sequences JJPE01000001-JJPE01000185.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979555.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:17:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,531
            CDSs (total)                      :: 3,472
            Genes (coding)                    :: 3,399
            CDSs (with protein)               :: 3,399
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 21 of 73
            Pseudo Genes (incomplete)         :: 51 of 73
            Pseudo Genes (internal stop)      :: 13 of 73
            Pseudo Genes (multiple problems)  :: 10 of 73
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4078713
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.A.2.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPE01000001-JJPE01000185
WGS_SCAFLD  NZ_JJPE01000001-NZ_JJPE01000185
//
LOCUS       NZ_JJOU01000000      4061783 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 2.F.T.2.6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJOU00000000
VERSION     NZ_JJOU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708974
            Assembly: GCF_000978955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4061783)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4061783)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOU00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJOU00000000.  This version of the project
            (01) has the accession number NZ_JJOU01000000, and consists of
            sequences JJOU01000001-JJOU01000236.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.3x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000978955.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:15:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,560
            CDSs (total)                      :: 3,500
            Genes (coding)                    :: 3,404
            CDSs (with protein)               :: 3,404
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 20 of 96
            Pseudo Genes (incomplete)         :: 70 of 96
            Pseudo Genes (internal stop)      :: 17 of 96
            Pseudo Genes (multiple problems)  :: 10 of 96
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4061783
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="2.F.T.2.6"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOU01000001-JJOU01000236
WGS_SCAFLD  NZ_JJOU01000001-NZ_JJOU01000236
//
LOCUS       NZ_JJPB01000000      4072655 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.A.1A.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPB00000000
VERSION     NZ_JJPB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708944
            Assembly: GCF_000978945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4072655)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4072655)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPB00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPB00000000.  This version of the project
            (01) has the accession number NZ_JJPB01000000, and consists of
            sequences JJPB01000001-JJPB01000147.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000978945.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:15:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,545
            CDSs (total)                      :: 3,484
            Genes (coding)                    :: 3,413
            CDSs (with protein)               :: 3,413
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 22 of 71
            Pseudo Genes (incomplete)         :: 47 of 71
            Pseudo Genes (internal stop)      :: 14 of 71
            Pseudo Genes (multiple problems)  :: 10 of 71
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4072655
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.A.1A.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPB01000001-JJPB01000147
WGS_SCAFLD  NZ_JJPB01000001-NZ_JJPB01000147
//
LOCUS       NZ_JJQI01000000      3988142 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.1A.4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQI00000000
VERSION     NZ_JJQI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708935
            Assembly: GCF_000979185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3988142)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3988142)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQI00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQI00000000.  This version of the project
            (01) has the accession number NZ_JJQI01000000, and consists of
            sequences JJQI01000001-JJQI01000123.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 45.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979185.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:17:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,484
            CDSs (total)                      :: 3,423
            Genes (coding)                    :: 3,352
            CDSs (with protein)               :: 3,352
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 19 of 71
            Pseudo Genes (incomplete)         :: 50 of 71
            Pseudo Genes (internal stop)      :: 14 of 71
            Pseudo Genes (multiple problems)  :: 11 of 71
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3988142
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.1A.4"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQI01000001-JJQI01000123
WGS_SCAFLD  NZ_JJQI01000001-NZ_JJQI01000123
//
LOCUS       NZ_JJPU01000000      4129439 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.M.1B.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPU00000000
VERSION     NZ_JJPU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708985
            Assembly: GCF_000979035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4129439)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4129439)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPU00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPU00000000.  This version of the project
            (01) has the accession number NZ_JJPU01000000, and consists of
            sequences JJPU01000001-JJPU01000211.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.5x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979035.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:15:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,600
            CDSs (total)                      :: 3,538
            Genes (coding)                    :: 3,446
            CDSs (with protein)               :: 3,446
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 19 of 92
            Pseudo Genes (incomplete)         :: 68 of 92
            Pseudo Genes (internal stop)      :: 18 of 92
            Pseudo Genes (multiple problems)  :: 12 of 92
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4129439
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.M.1B.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPU01000001-JJPU01000211
WGS_SCAFLD  NZ_JJPU01000001-NZ_JJPU01000211
//
LOCUS       NZ_JJQD01000000      3971272 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.F.A.2.8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQD00000000
VERSION     NZ_JJQD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708956
            Assembly: GCF_000979115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3971272)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3971272)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQD00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQD00000000.  This version of the project
            (01) has the accession number NZ_JJQD01000000, and consists of
            sequences JJQD01000001-JJQD01000238.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 45.3x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979115.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:15:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,466
            CDSs (total)                      :: 3,403
            Genes (coding)                    :: 3,332
            CDSs (with protein)               :: 3,332
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 17 of 71
            Pseudo Genes (incomplete)         :: 45 of 71
            Pseudo Genes (internal stop)      :: 18 of 71
            Pseudo Genes (multiple problems)  :: 8 of 71
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3971272
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.F.A.2.8"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQD01000001-JJQD01000238
WGS_SCAFLD  NZ_JJQD01000001-NZ_JJQD01000238
//
LOCUS       NZ_JJOT01000000      4091453 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 2.F.T.0.2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJOT00000000
VERSION     NZ_JJOT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708943
            Assembly: GCF_000979375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4091453)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4091453)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOT00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJOT00000000.  This version of the project
            (01) has the accession number NZ_JJOT01000000, and consists of
            sequences JJOT01000001-JJOT01000136.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979375.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:17:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,580
            CDSs (total)                      :: 3,518
            Genes (coding)                    :: 3,428
            CDSs (with protein)               :: 3,428
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 27 of 90
            Pseudo Genes (incomplete)         :: 66 of 90
            Pseudo Genes (internal stop)      :: 17 of 90
            Pseudo Genes (multiple problems)  :: 19 of 90
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4091453
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="2.F.T.0.2"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOT01000001-JJOT01000136
WGS_SCAFLD  NZ_JJOT01000001-NZ_JJOT01000136
//
LOCUS       NZ_JJQH01000000      4084784 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.1A.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQH00000000
VERSION     NZ_JJQH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708968
            Assembly: GCF_000979175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4084784)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4084784)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQH00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQH00000000.  This version of the project
            (01) has the accession number NZ_JJQH01000000, and consists of
            sequences JJQH01000001-JJQH01000205.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979175.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:18:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,532
            CDSs (total)                      :: 3,470
            Genes (coding)                    :: 3,391
            CDSs (with protein)               :: 3,391
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 18 of 79
            Pseudo Genes (incomplete)         :: 57 of 79
            Pseudo Genes (internal stop)      :: 19 of 79
            Pseudo Genes (multiple problems)  :: 12 of 79
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4084784
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.1A.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQH01000001-JJQH01000205
WGS_SCAFLD  NZ_JJQH01000001-NZ_JJQH01000205
//
LOCUS       NZ_JJQA01000000      4048935 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.F.A.1A.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQA00000000
VERSION     NZ_JJQA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708932
            Assembly: GCF_000979105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4048935)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4048935)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQA00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQA00000000.  This version of the project
            (01) has the accession number NZ_JJQA01000000, and consists of
            sequences JJQA01000001-JJQA01000124.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.4x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979105.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:17:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,514
            CDSs (total)                      :: 3,454
            Genes (coding)                    :: 3,387
            CDSs (with protein)               :: 3,387
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 17 of 67
            Pseudo Genes (incomplete)         :: 44 of 67
            Pseudo Genes (internal stop)      :: 15 of 67
            Pseudo Genes (multiple problems)  :: 8 of 67
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4048935
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.F.A.1A.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJQA01000001-JJQA01000124
WGS_SCAFLD  NZ_JJQA01000001-NZ_JJQA01000124
//
LOCUS       NZ_JJPD01000000      4075981 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.A.2.12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPD00000000
VERSION     NZ_JJPD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708975
            Assembly: GCF_000979515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4075981)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4075981)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPD00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPD00000000.  This version of the project
            (01) has the accession number NZ_JJPD01000000, and consists of
            sequences JJPD01000001-JJPD01000209.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979515.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:20:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,530
            CDSs (total)                      :: 3,467
            Genes (coding)                    :: 3,392
            CDSs (with protein)               :: 3,392
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 22 of 75
            Pseudo Genes (incomplete)         :: 53 of 75
            Pseudo Genes (internal stop)      :: 14 of 75
            Pseudo Genes (multiple problems)  :: 12 of 75
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4075981
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.A.2.12"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPD01000001-JJPD01000209
WGS_SCAFLD  NZ_JJPD01000001-NZ_JJPD01000209
//
LOCUS       NZ_JJPX01000000      4003367 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.M.2.7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPX00000000
VERSION     NZ_JJPX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708964
            Assembly: GCF_000979095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4003367)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4003367)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPX00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPX00000000.  This version of the project
            (01) has the accession number NZ_JJPX01000000, and consists of
            sequences JJPX01000001-JJPX01000199.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979095.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:17:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,479
            CDSs (total)                      :: 3,416
            Genes (coding)                    :: 3,346
            CDSs (with protein)               :: 3,346
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 17 of 70
            Pseudo Genes (incomplete)         :: 50 of 70
            Pseudo Genes (internal stop)      :: 17 of 70
            Pseudo Genes (multiple problems)  :: 12 of 70
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003367
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.M.2.7"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPX01000001-JJPX01000199
WGS_SCAFLD  NZ_JJPX01000001-NZ_JJPX01000199
//
LOCUS       NZ_JROF01000000      4350698 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema salifodinae strain KCY07-B2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JROF00000000
VERSION     NZ_JROF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03077632
            Assembly: GCF_000784335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema salifodinae
  ORGANISM  Natrinema salifodinae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4350698)
  AUTHORS   Zhang,W.Y., Hu,J., Pan,J., Sun,C., Wu,M. and Xu,X.W.
  TITLE     Draft genome sequence of Halopiger salifodinae KCY07-B2(T), an
            extremly halophilic archaeon isolated from a salt mine
  JOURNAL   Stand Genomic Sci 10, 124 (2015)
   PUBMED   26664653
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4350698)
  AUTHORS   Zhang,W.Y., Meng,Y., Zhu,X.F. and Wu,M.
  TITLE     Halopiger salifodinae sp. nov., an extremely halophilic archaeon
            isolated from a salt mine
  JOURNAL   Int J Syst Evol Microbiol 63 (Pt 10), 3563-3567 (2013)
   PUBMED   23563233
REFERENCE   3  (bases 1 to 4350698)
  AUTHORS   Zhang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2014) Laboratory of Extremophiles, Zhejiang
            University, No. 866, Yuhangtang Road, Hangzhou, Zhejiang 310058,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JROF00000000.1.
            The Natrinema salifodinae whole genome shotgun (WGS) project has
            the project accession NZ_JROF00000000.  This version of the project
            (01) has the accession number NZ_JROF01000000, and consists of
            sequences JROF01000001-JROF01000081.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 1.05
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 75.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000784335.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:49:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,255
            CDSs (total)                      :: 4,199
            Genes (coding)                    :: 4,117
            CDSs (with protein)               :: 4,117
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 26 of 82
            Pseudo Genes (incomplete)         :: 58 of 82
            Pseudo Genes (internal stop)      :: 13 of 82
            Pseudo Genes (multiple problems)  :: 12 of 82
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4350698
                     /organism="Natrinema salifodinae"
                     /mol_type="genomic DNA"
                     /strain="KCY07-B2"
                     /isolation_source="salt mine"
                     /type_material="type strain of Halopiger salifodinae"
                     /db_xref="taxon:1202768"
                     /geo_loc_name="China"
                     /collection_date="2012-09-14"
WGS         JROF01000001-JROF01000081
WGS_SCAFLD  NZ_JROF01000001-NZ_JROF01000081
//
LOCUS       NZ_JJPO01000000      3981512 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.A.2.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPO00000000
VERSION     NZ_JJPO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708987
            Assembly: GCF_000979015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3981512)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3981512)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPO00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPO00000000.  This version of the project
            (01) has the accession number NZ_JJPO01000000, and consists of
            sequences JJPO01000001-JJPO01000159.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 45.2x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979015.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:14:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,473
            CDSs (total)                      :: 3,413
            Genes (coding)                    :: 3,356
            CDSs (with protein)               :: 3,356
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 17 of 57
            Pseudo Genes (incomplete)         :: 40 of 57
            Pseudo Genes (internal stop)      :: 12 of 57
            Pseudo Genes (multiple problems)  :: 10 of 57
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3981512
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.A.2.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPO01000001-JJPO01000159
WGS_SCAFLD  NZ_JJPO01000001-NZ_JJPO01000159
//
LOCUS       NZ_JJQS01000000      4080747 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.M.1A.2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQS00000000
VERSION     NZ_JJQS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708938
            Assembly: GCF_000979255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4080747)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4080747)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQS00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQS00000000.  This version of the project
            (01) has the accession number NZ_JJQS01000000, and consists of
            sequences JJQS01000001-JJQS01000155.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979255.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:22:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,539
            CDSs (total)                      :: 3,478
            Genes (coding)                    :: 3,401
            CDSs (with protein)               :: 3,401
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 20 of 77
            Pseudo Genes (incomplete)         :: 57 of 77
            Pseudo Genes (internal stop)      :: 17 of 77
            Pseudo Genes (multiple problems)  :: 14 of 77
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080747
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.M.1A.2"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQS01000001-JJQS01000155
WGS_SCAFLD  NZ_JJQS01000001-NZ_JJQS01000155
//
LOCUS       NZ_JNCS01000000      3774135 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Natrinema altunense strain AJ2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JNCS00000000
VERSION     NZ_JNCS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02800870
            Assembly: GCF_000731985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema altunense
  ORGANISM  Natrinema altunense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3774135)
  AUTHORS   Xu,X.W., Ren,P.G., Liu,S.J., Wu,M. and Zhou,P.J.
  TITLE     Natrinema altunense sp. nov., an extremely halophilic archaeon
            isolated from a salt lake in Altun Mountain in Xinjiang, China
  JOURNAL   Int J Syst Evol Microbiol 55 (Pt 3), 1311-1314 (2005)
   PUBMED   15879273
REFERENCE   2  (bases 1 to 3774135)
  AUTHORS   Cheng,H., Huo,Y.-Y. and Wu,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2014) College of Life Sciences, Zhejiang
            University, Yuhangtang Road No. 866, Hangzhou, Zhejiang 310058,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JNCS00000000.1.
            The Natrinema altunense whole genome shotgun (WGS) project has the
            project accession NZ_JNCS00000000.  This version of the project
            (01) has the accession number NZ_JNCS01000000, and consists of
            sequences JNCS01000001-JNCS01000020.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Newbler v. Feb-2013
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 120.0x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000731985.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:48:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,826
            CDSs (total)                      :: 3,768
            Genes (coding)                    :: 3,698
            CDSs (with protein)               :: 3,698
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 33 of 70
            Pseudo Genes (incomplete)         :: 44 of 70
            Pseudo Genes (internal stop)      :: 15 of 70
            Pseudo Genes (multiple problems)  :: 21 of 70
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774135
                     /organism="Natrinema altunense"
                     /mol_type="genomic DNA"
                     /strain="AJ2"
                     /isolation_source="Ayakekum salt lake - low temperature,
                     low nutrient levels, abundant sunlight and remote
                     geographical location; pH of the water was approximately
                     pH 7-8"
                     /type_material="type strain of Natrinema altunense"
                     /db_xref="taxon:222984"
                     /geo_loc_name="China: Xinjiang"
                     /lat_lon="37.62 N 89.48 E"
                     /altitude="3884 m"
                     /collection_date="2004"
                     /identified_by="Xue-Wei Xu"
WGS         JNCS01000001-JNCS01000020
WGS_SCAFLD  NZ_JNCS01000001-NZ_JNCS01000020
//
LOCUS       NZ_JJPZ01000000      4091099 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.T.1A.2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPZ00000000
VERSION     NZ_JJPZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708965
            Assembly: GCF_000979825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4091099)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4091099)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPZ00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPZ00000000.  This version of the project
            (01) has the accession number NZ_JJPZ01000000, and consists of
            sequences JJPZ01000001-JJPZ01000185.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979825.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:23:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,562
            CDSs (total)                      :: 3,501
            Genes (coding)                    :: 3,438
            CDSs (with protein)               :: 3,438
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 16 of 63
            Pseudo Genes (incomplete)         :: 43 of 63
            Pseudo Genes (internal stop)      :: 11 of 63
            Pseudo Genes (multiple problems)  :: 7 of 63
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4091099
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.T.1A.2"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPZ01000001-JJPZ01000185
WGS_SCAFLD  NZ_JJPZ01000001-NZ_JJPZ01000185
//
LOCUS       NZ_JJQV01000000      4081675 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.M.2.2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQV00000000
VERSION     NZ_JJQV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708939
            Assembly: GCF_000979275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4081675)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4081675)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQV00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQV00000000.  This version of the project
            (01) has the accession number NZ_JJQV01000000, and consists of
            sequences JJQV01000001-JJQV01000154.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979275.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:22:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,546
            CDSs (total)                      :: 3,485
            Genes (coding)                    :: 3,409
            CDSs (with protein)               :: 3,409
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 19 of 76
            Pseudo Genes (incomplete)         :: 56 of 76
            Pseudo Genes (internal stop)      :: 17 of 76
            Pseudo Genes (multiple problems)  :: 13 of 76
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4081675
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.M.2.2"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQV01000001-JJQV01000154
WGS_SCAFLD  NZ_JJQV01000001-NZ_JJQV01000154
//
LOCUS       NZ_JJPA01000000      4102127 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.A.1A.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPA00000000
VERSION     NZ_JJPA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708982
            Assembly: GCF_000979495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4102127)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4102127)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPA00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPA00000000.  This version of the project
            (01) has the accession number NZ_JJPA01000000, and consists of
            sequences JJPA01000001-JJPA01000267.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.7x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979495.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:21:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,650
            CDSs (total)                      :: 3,588
            Genes (coding)                    :: 3,501
            CDSs (with protein)               :: 3,501
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 16 of 87
            Pseudo Genes (incomplete)         :: 66 of 87
            Pseudo Genes (internal stop)      :: 14 of 87
            Pseudo Genes (multiple problems)  :: 8 of 87
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4102127
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.A.1A.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPA01000001-JJPA01000267
WGS_SCAFLD  NZ_JJPA01000001-NZ_JJPA01000267
//
LOCUS       NZ_JJPH01000000      4028272 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.A.2.7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPH00000000
VERSION     NZ_JJPH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708947
            Assembly: GCF_000979585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4028272)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4028272)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPH00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPH00000000.  This version of the project
            (01) has the accession number NZ_JJPH01000000, and consists of
            sequences JJPH01000001-JJPH01000142.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.6x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979585.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:22:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,502
            CDSs (total)                      :: 3,440
            Genes (coding)                    :: 3,373
            CDSs (with protein)               :: 3,373
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 20 of 67
            Pseudo Genes (incomplete)         :: 44 of 67
            Pseudo Genes (internal stop)      :: 15 of 67
            Pseudo Genes (multiple problems)  :: 10 of 67
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4028272
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.A.2.7"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPH01000001-JJPH01000142
WGS_SCAFLD  NZ_JJPH01000001-NZ_JJPH01000142
//
LOCUS       NZ_JJPT01000000      4120526 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.M.1A.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPT00000000
VERSION     NZ_JJPT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708952
            Assembly: GCF_000979755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4120526)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4120526)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPT00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPT00000000.  This version of the project
            (01) has the accession number NZ_JJPT01000000, and consists of
            sequences JJPT01000001-JJPT01000167.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.6x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979755.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:22:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,556
            CDSs (total)                      :: 3,494
            Genes (coding)                    :: 3,407
            CDSs (with protein)               :: 3,407
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 19 of 87
            Pseudo Genes (incomplete)         :: 67 of 87
            Pseudo Genes (internal stop)      :: 19 of 87
            Pseudo Genes (multiple problems)  :: 14 of 87
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4120526
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.M.1A.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPT01000001-JJPT01000167
WGS_SCAFLD  NZ_JJPT01000001-NZ_JJPT01000167
//
LOCUS       NZ_JJOV01000000      3906951 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina sp. 2.H.A.1B.4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JJOV00000000
VERSION     NZ_JJOV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708992
            Assembly: GCF_000979385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. 2.H.A.1B.4
  ORGANISM  Methanosarcina sp. 2.H.A.1B.4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3906951)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3906951)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOV00000000.1.
            The Methanosarcina sp. 2.H.A.1B.4 whole genome shotgun (WGS)
            project has the project accession NZ_JJOV00000000.  This version of
            the project (01) has the accession number NZ_JJOV01000000, and
            consists of sequences JJOV01000001-JJOV01000094.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 46.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979385.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:22:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,373
            CDSs (total)                      :: 3,312
            Genes (coding)                    :: 3,248
            CDSs (with protein)               :: 3,248
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 15 of 64
            Pseudo Genes (incomplete)         :: 51 of 64
            Pseudo Genes (internal stop)      :: 10 of 64
            Pseudo Genes (multiple problems)  :: 11 of 64
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906951
                     /organism="Methanosarcina sp. 2.H.A.1B.4"
                     /mol_type="genomic DNA"
                     /strain="2.H.A.1B.4"
                     /isolation_source="sediment"
                     /db_xref="taxon:1483600"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOV01000001-JJOV01000094
WGS_SCAFLD  NZ_JJOV01000001-NZ_JJOV01000094
//
LOCUS       NZ_JJPJ01000000      4157382 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.T.1A.2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPJ00000000
VERSION     NZ_JJPJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708948
            Assembly: GCF_000979595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4157382)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4157382)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPJ00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPJ00000000.  This version of the project
            (01) has the accession number NZ_JJPJ01000000, and consists of
            sequences JJPJ01000001-JJPJ01000163.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.2x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979595.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:22:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,594
            CDSs (total)                      :: 3,533
            Genes (coding)                    :: 3,453
            CDSs (with protein)               :: 3,453
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 25 of 80
            Pseudo Genes (incomplete)         :: 57 of 80
            Pseudo Genes (internal stop)      :: 18 of 80
            Pseudo Genes (multiple problems)  :: 19 of 80
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4157382
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.T.1A.2"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPJ01000001-JJPJ01000163
WGS_SCAFLD  NZ_JJPJ01000001-NZ_JJPJ01000163
//
LOCUS       NZ_JJOR01000000      4077722 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 2.F.A.2.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJOR00000000
VERSION     NZ_JJOR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708960
            Assembly: GCF_000979335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4077722)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4077722)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOR00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJOR00000000.  This version of the project
            (01) has the accession number NZ_JJOR01000000, and consists of
            sequences JJOR01000001-JJOR01000189.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979335.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:21:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,539
            CDSs (total)                      :: 3,477
            Genes (coding)                    :: 3,402
            CDSs (with protein)               :: 3,402
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 19 of 75
            Pseudo Genes (incomplete)         :: 53 of 75
            Pseudo Genes (internal stop)      :: 18 of 75
            Pseudo Genes (multiple problems)  :: 12 of 75
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077722
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="2.F.A.2.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOR01000001-JJOR01000189
WGS_SCAFLD  NZ_JJOR01000001-NZ_JJOR01000189
//
LOCUS       NZ_JJOS01000000      4198417 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 2.F.A.2.4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJOS00000000
VERSION     NZ_JJOS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708981
            Assembly: GCF_000979345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4198417)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4198417)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOS00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJOS00000000.  This version of the project
            (01) has the accession number NZ_JJOS01000000, and consists of
            sequences JJOS01000001-JJOS01000146.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 42.8x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979345.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:24:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,666
            CDSs (total)                      :: 3,599
            Genes (coding)                    :: 3,523
            CDSs (with protein)               :: 3,523
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 25 of 76
            Pseudo Genes (incomplete)         :: 48 of 76
            Pseudo Genes (internal stop)      :: 20 of 76
            Pseudo Genes (multiple problems)  :: 14 of 76
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4198417
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="2.F.A.2.4"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOS01000001-JJOS01000146
WGS_SCAFLD  NZ_JJOS01000001-NZ_JJOS01000146
//
LOCUS       NZ_JJPV01000000      4125302 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.M.1B.2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPV00000000
VERSION     NZ_JJPV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708953
            Assembly: GCF_000979765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4125302)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4125302)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPV00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPV00000000.  This version of the project
            (01) has the accession number NZ_JJPV01000000, and consists of
            sequences JJPV01000001-JJPV01000136.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.6x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979765.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:24:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,586
            CDSs (total)                      :: 3,524
            Genes (coding)                    :: 3,437
            CDSs (with protein)               :: 3,437
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 19 of 87
            Pseudo Genes (incomplete)         :: 63 of 87
            Pseudo Genes (internal stop)      :: 18 of 87
            Pseudo Genes (multiple problems)  :: 12 of 87
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125302
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.M.1B.2"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPV01000001-JJPV01000136
WGS_SCAFLD  NZ_JJPV01000001-NZ_JJPV01000136
//
LOCUS       NZ_JJPC01000000      4077895 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.A.1B.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPC00000000
VERSION     NZ_JJPC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708983
            Assembly: GCF_000979505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4077895)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4077895)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPC00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPC00000000.  This version of the project
            (01) has the accession number NZ_JJPC01000000, and consists of
            sequences JJPC01000001-JJPC01000167.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979505.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:21:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,544
            CDSs (total)                      :: 3,481
            Genes (coding)                    :: 3,404
            CDSs (with protein)               :: 3,404
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 19 of 77
            Pseudo Genes (incomplete)         :: 54 of 77
            Pseudo Genes (internal stop)      :: 15 of 77
            Pseudo Genes (multiple problems)  :: 10 of 77
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077895
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.A.1B.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPC01000001-JJPC01000167
WGS_SCAFLD  NZ_JJPC01000001-NZ_JJPC01000167
//
LOCUS       NZ_JJPP01000000      4123503 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.A.2.4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPP00000000
VERSION     NZ_JJPP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708963
            Assembly: GCF_000979685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4123503)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4123503)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPP00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPP00000000.  This version of the project
            (01) has the accession number NZ_JJPP01000000, and consists of
            sequences JJPP01000001-JJPP01000157.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.6x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979685.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:21:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,601
            CDSs (total)                      :: 3,540
            Genes (coding)                    :: 3,458
            CDSs (with protein)               :: 3,458
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 23 of 82
            Pseudo Genes (incomplete)         :: 56 of 82
            Pseudo Genes (internal stop)      :: 20 of 82
            Pseudo Genes (multiple problems)  :: 14 of 82
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4123503
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.A.2.4"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPP01000001-JJPP01000157
WGS_SCAFLD  NZ_JJPP01000001-NZ_JJPP01000157
//
LOCUS       NZ_JJPN01000000      4095496 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.A.1A.2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPN00000000
VERSION     NZ_JJPN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708962
            Assembly: GCF_000979675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4095496)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4095496)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPN00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPN00000000.  This version of the project
            (01) has the accession number NZ_JJPN01000000, and consists of
            sequences JJPN01000001-JJPN01000182.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979675.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:24:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,553
            CDSs (total)                      :: 3,492
            Genes (coding)                    :: 3,431
            CDSs (with protein)               :: 3,431
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 16 of 61
            Pseudo Genes (incomplete)         :: 41 of 61
            Pseudo Genes (internal stop)      :: 11 of 61
            Pseudo Genes (multiple problems)  :: 7 of 61
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4095496
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.A.1A.2"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPN01000001-JJPN01000182
WGS_SCAFLD  NZ_JJPN01000001-NZ_JJPN01000182
//
LOCUS       NZ_JJPL01000000      4109510 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.T.2.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPL00000000
VERSION     NZ_JJPL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708986
            Assembly: GCF_000979665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4109510)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4109510)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPL00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPL00000000.  This version of the project
            (01) has the accession number NZ_JJPL01000000, and consists of
            sequences JJPL01000001-JJPL01000162.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.7x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979665.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:27:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,577
            CDSs (total)                      :: 3,514
            Genes (coding)                    :: 3,425
            CDSs (with protein)               :: 3,425
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 20 of 89
            Pseudo Genes (incomplete)         :: 66 of 89
            Pseudo Genes (internal stop)      :: 19 of 89
            Pseudo Genes (multiple problems)  :: 13 of 89
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4109510
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.T.2.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPL01000001-JJPL01000162
WGS_SCAFLD  NZ_JJPL01000001-NZ_JJPL01000162
//
LOCUS       NZ_JJPK01000000      4159902 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.T.1A.4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPK00000000
VERSION     NZ_JJPK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708949
            Assembly: GCF_000979635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4159902)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4159902)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPK00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPK00000000.  This version of the project
            (01) has the accession number NZ_JJPK01000000, and consists of
            sequences JJPK01000001-JJPK01000139.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.2x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979635.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:24:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,602
            CDSs (total)                      :: 3,540
            Genes (coding)                    :: 3,461
            CDSs (with protein)               :: 3,461
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 22 of 79
            Pseudo Genes (incomplete)         :: 55 of 79
            Pseudo Genes (internal stop)      :: 19 of 79
            Pseudo Genes (multiple problems)  :: 16 of 79
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4159902
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.T.1A.4"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPK01000001-JJPK01000139
WGS_SCAFLD  NZ_JJPK01000001-NZ_JJPK01000139
//
LOCUS       NZ_JJQL01000000      3870494 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina sp. 1.H.A.2.2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JJQL00000000
VERSION     NZ_JJQL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708993
            Assembly: GCF_000979975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. 1.H.A.2.2
  ORGANISM  Methanosarcina sp. 1.H.A.2.2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3870494)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3870494)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQL00000000.1.
            The Methanosarcina sp. 1.H.A.2.2 whole genome shotgun (WGS) project
            has the project accession NZ_JJQL00000000.  This version of the
            project (01) has the accession number NZ_JJQL01000000, and consists
            of sequences JJQL01000001-JJQL01000103.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 46.5x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979975.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:27:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,316
            CDSs (total)                      :: 3,256
            Genes (coding)                    :: 3,211
            CDSs (with protein)               :: 3,211
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 14 of 45
            Pseudo Genes (incomplete)         :: 37 of 45
            Pseudo Genes (internal stop)      :: 12 of 45
            Pseudo Genes (multiple problems)  :: 15 of 45
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3870494
                     /organism="Methanosarcina sp. 1.H.A.2.2"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.2.2"
                     /isolation_source="sediment"
                     /db_xref="taxon:1483601"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQL01000001-JJQL01000103
WGS_SCAFLD  NZ_JJQL01000001-NZ_JJQL01000103
//
LOCUS       NZ_JJPQ01000000      4093088 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.A.2.5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPQ00000000
VERSION     NZ_JJPQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708950
            Assembly: GCF_000979735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4093088)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4093088)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPQ00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPQ00000000.  This version of the project
            (01) has the accession number NZ_JJPQ01000000, and consists of
            sequences JJPQ01000001-JJPQ01000186.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 43.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979735.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:26:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,536
            CDSs (total)                      :: 3,474
            Genes (coding)                    :: 3,412
            CDSs (with protein)               :: 3,412
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 16 of 62
            Pseudo Genes (incomplete)         :: 42 of 62
            Pseudo Genes (internal stop)      :: 11 of 62
            Pseudo Genes (multiple problems)  :: 7 of 62
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4093088
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.A.2.5"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPQ01000001-JJPQ01000186
WGS_SCAFLD  NZ_JJPQ01000001-NZ_JJPQ01000186
//
LOCUS       NZ_JJPS01000000      4005819 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.A.2.8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPS00000000
VERSION     NZ_JJPS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708977
            Assembly: GCF_000979745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4005819)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4005819)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPS00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPS00000000.  This version of the project
            (01) has the accession number NZ_JJPS01000000, and consists of
            sequences JJPS01000001-JJPS01000222.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979745.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:24:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,463
            CDSs (total)                      :: 3,405
            Genes (coding)                    :: 3,317
            CDSs (with protein)               :: 3,317
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 18 of 88
            Pseudo Genes (incomplete)         :: 66 of 88
            Pseudo Genes (internal stop)      :: 16 of 88
            Pseudo Genes (multiple problems)  :: 10 of 88
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005819
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.A.2.8"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPS01000001-JJPS01000222
WGS_SCAFLD  NZ_JJPS01000001-NZ_JJPS01000222
//
LOCUS       NZ_JJPG01000000      4042356 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.F.A.2.6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPG00000000
VERSION     NZ_JJPG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708946
            Assembly: GCF_000979575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4042356)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4042356)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPG00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPG00000000.  This version of the project
            (01) has the accession number NZ_JJPG01000000, and consists of
            sequences JJPG01000001-JJPG01000160.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.5x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979575.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:26:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,519
            CDSs (total)                      :: 3,459
            Genes (coding)                    :: 3,387
            CDSs (with protein)               :: 3,387
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 22 of 72
            Pseudo Genes (incomplete)         :: 49 of 72
            Pseudo Genes (internal stop)      :: 14 of 72
            Pseudo Genes (multiple problems)  :: 11 of 72
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4042356
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.F.A.2.6"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPG01000001-JJPG01000160
WGS_SCAFLD  NZ_JJPG01000001-NZ_JJPG01000160
//
LOCUS       NZ_JJQY01000000      3841888 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina sp. 1.H.T.1A.1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JJQY00000000
VERSION     NZ_JJQY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708994
            Assembly: GCF_000979295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. 1.H.T.1A.1
  ORGANISM  Methanosarcina sp. 1.H.T.1A.1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3841888)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3841888)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQY00000000.1.
            The Methanosarcina sp. 1.H.T.1A.1 whole genome shotgun (WGS)
            project has the project accession NZ_JJQY00000000.  This version of
            the project (01) has the accession number NZ_JJQY01000000, and
            consists of sequences JJQY01000001-JJQY01000160.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 46.8x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979295.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:24:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,320
            CDSs (total)                      :: 3,261
            Genes (coding)                    :: 3,181
            CDSs (with protein)               :: 3,181
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 10 of 80
            Pseudo Genes (incomplete)         :: 70 of 80
            Pseudo Genes (internal stop)      :: 12 of 80
            Pseudo Genes (multiple problems)  :: 10 of 80
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3841888
                     /organism="Methanosarcina sp. 1.H.T.1A.1"
                     /mol_type="genomic DNA"
                     /strain="1.H.T.1A.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:1483602"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQY01000001-JJQY01000160
WGS_SCAFLD  NZ_JJQY01000001-NZ_JJQY01000160
//
LOCUS       NZ_JJPY01000000      4074616 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 3.H.T.1A.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJPY00000000
VERSION     NZ_JJPY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708955
            Assembly: GCF_000979815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4074616)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4074616)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJPY00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJPY00000000.  This version of the project
            (01) has the accession number NZ_JJPY01000000, and consists of
            sequences JJPY01000001-JJPY01000128.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979815.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:25:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,540
            CDSs (total)                      :: 3,479
            Genes (coding)                    :: 3,415
            CDSs (with protein)               :: 3,415
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 17 of 64
            Pseudo Genes (incomplete)         :: 44 of 64
            Pseudo Genes (internal stop)      :: 11 of 64
            Pseudo Genes (multiple problems)  :: 8 of 64
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4074616
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="3.H.T.1A.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJPY01000001-JJPY01000128
WGS_SCAFLD  NZ_JJPY01000001-NZ_JJPY01000128
//
LOCUS       NZ_JJQB01000000      4033711 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.F.A.1B.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQB00000000
VERSION     NZ_JJQB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708933
            Assembly: GCF_000979845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4033711)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4033711)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQB00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQB00000000.  This version of the project
            (01) has the accession number NZ_JJQB01000000, and consists of
            sequences JJQB01000001-JJQB01000144.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.6x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979845.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:26:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,485
            CDSs (total)                      :: 3,423
            Genes (coding)                    :: 3,353
            CDSs (with protein)               :: 3,353
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 19 of 70
            Pseudo Genes (incomplete)         :: 48 of 70
            Pseudo Genes (internal stop)      :: 15 of 70
            Pseudo Genes (multiple problems)  :: 10 of 70
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4033711
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.F.A.1B.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.1597 N 123.8065 W"
                     /collection_date="2011-08-22"
WGS         JJQB01000001-JJQB01000144
WGS_SCAFLD  NZ_JJQB01000001-NZ_JJQB01000144
//
LOCUS       NZ_JJQU01000000      4187444 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.M.2.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQU00000000
VERSION     NZ_JJQU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708980
            Assembly: GCF_000979265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4187444)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4187444)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQU00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQU00000000.  This version of the project
            (01) has the accession number NZ_JJQU01000000, and consists of
            sequences JJQU01000001-JJQU01000263.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 42.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979265.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:23:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,676
            CDSs (total)                      :: 3,610
            Genes (coding)                    :: 3,528
            CDSs (with protein)               :: 3,528
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 23 of 82
            Pseudo Genes (incomplete)         :: 54 of 82
            Pseudo Genes (internal stop)      :: 18 of 82
            Pseudo Genes (multiple problems)  :: 11 of 82
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4187444
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.M.2.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQU01000001-JJQU01000263
WGS_SCAFLD  NZ_JJQU01000001-NZ_JJQU01000263
//
LOCUS       NZ_JJOY01000000      4074383 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina sp. 2.H.T.1A.6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JJOY00000000
VERSION     NZ_JJOY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708991
            Assembly: GCF_000979455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. 2.H.T.1A.6
  ORGANISM  Methanosarcina sp. 2.H.T.1A.6
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4074383)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4074383)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOY00000000.1.
            The Methanosarcina sp. 2.H.T.1A.6 whole genome shotgun (WGS)
            project has the project accession NZ_JJOY00000000.  This version of
            the project (01) has the accession number NZ_JJOY01000000, and
            consists of sequences JJOY01000001-JJOY01000054.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979455.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:19:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,509
            CDSs (total)                      :: 3,450
            Genes (coding)                    :: 3,384
            CDSs (with protein)               :: 3,384
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 13 of 66
            Pseudo Genes (incomplete)         :: 47 of 66
            Pseudo Genes (internal stop)      :: 22 of 66
            Pseudo Genes (multiple problems)  :: 15 of 66
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4074383
                     /organism="Methanosarcina sp. 2.H.T.1A.6"
                     /mol_type="genomic DNA"
                     /strain="2.H.T.1A.6"
                     /isolation_source="sediment"
                     /db_xref="taxon:1483599"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOY01000001-JJOY01000054
WGS_SCAFLD  NZ_JJOY01000001-NZ_JJOY01000054
//
LOCUS       NZ_JRHO01000000      2508511 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanococcoides methylutens strain DSM 2657, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JRHO00000000
VERSION     NZ_JRHO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03067868
            Assembly: GCF_000765475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides methylutens
  ORGANISM  Methanococcoides methylutens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1  (bases 1 to 2508511)
  AUTHORS   Guan,Y., Ngugi,D.K., Blom,J., Ali,S., Ferry,J.G. and Stingl,U.
  TITLE     Draft Genome Sequence of an Obligately Methylotrophic Methanogen,
            Methanococcoides methylutens, Isolated from Marine Sediment
  JOURNAL   Genome Announc 2 (6), e01184-14 (2014)
   PUBMED   25414501
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508511)
  AUTHORS   Guan,Y., Ngugi,D.K., Blom,J., Ali,S., Ferry,J.G. and Stingl,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-SEP-2014) Red Sea Research Center, King Abdullah
            University of Science and Technology (KAUST), 4700 KAUST, Thuwal
            (Jeddah), Western 23955-6900, Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JRHO00000000.1.
            The Methanococcoides methylutens whole genome shotgun (WGS) project
            has the project accession NZ_JRHO00000000.  This version of the
            project (01) has the accession number NZ_JRHO01000000, and consists
            of sequences JRHO01000001-JRHO01000015.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2014
            Assembly Method       :: SPAdes v. 2.5.1
            Assembly Name         :: Mmet_Version1
            Genome Coverage       :: 30.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000765475.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:00:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,533
            CDSs (total)                      :: 2,472
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 61
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 21 of 31
            Pseudo Genes (internal stop)      :: 16 of 31
            Pseudo Genes (multiple problems)  :: 10 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508511
                     /organism="Methanococcoides methylutens"
                     /mol_type="genomic DNA"
                     /strain="DSM 2657"
                     /isolation_source="submarine canyon sediments off the
                     coast of southern California"
                     /culture_collection="DSM:2657"
                     /type_material="type strain of Methanococcoides
                     methylutens"
                     /db_xref="taxon:2226"
                     /geo_loc_name="USA: La Jolla, CA"
                     /collection_date="1982"
WGS         JRHO01000001-JRHO01000015
WGS_SCAFLD  NZ_JRHO01000001-NZ_JRHO01000015
//
LOCUS       NZ_JJOW01000000      4079738 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina sp. 2.H.T.1A.15, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JJOW00000000
VERSION     NZ_JJOW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708988
            Assembly: GCF_000979415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. 2.H.T.1A.15
  ORGANISM  Methanosarcina sp. 2.H.T.1A.15
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4079738)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4079738)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOW00000000.1.
            The Methanosarcina sp. 2.H.T.1A.15 whole genome shotgun (WGS)
            project has the project accession NZ_JJOW00000000.  This version of
            the project (01) has the accession number NZ_JJOW01000000, and
            consists of sequences JJOW01000001-JJOW01000352.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979415.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:21:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,643
            CDSs (total)                      :: 3,586
            Genes (coding)                    :: 3,438
            CDSs (with protein)               :: 3,438
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 12 of 148
            Pseudo Genes (incomplete)         :: 132 of 148
            Pseudo Genes (internal stop)      :: 20 of 148
            Pseudo Genes (multiple problems)  :: 15 of 148
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4079738
                     /organism="Methanosarcina sp. 2.H.T.1A.15"
                     /mol_type="genomic DNA"
                     /strain="2.H.T.1A.15"
                     /isolation_source="sediment"
                     /db_xref="taxon:1483596"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOW01000001-JJOW01000352
WGS_SCAFLD  NZ_JJOW01000001-NZ_JJOW01000352
//
LOCUS       NZ_JJOX01000000      4083417 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina sp. 2.H.T.1A.3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JJOX00000000
VERSION     NZ_JJOX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708989
            Assembly: GCF_000979425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. 2.H.T.1A.3
  ORGANISM  Methanosarcina sp. 2.H.T.1A.3
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4083417)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4083417)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOX00000000.1.
            The Methanosarcina sp. 2.H.T.1A.3 whole genome shotgun (WGS)
            project has the project accession NZ_JJOX00000000.  This version of
            the project (01) has the accession number NZ_JJOX01000000, and
            consists of sequences JJOX01000001-JJOX01000092.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979425.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:23:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,526
            CDSs (total)                      :: 3,467
            Genes (coding)                    :: 3,395
            CDSs (with protein)               :: 3,395
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 15 of 72
            Pseudo Genes (incomplete)         :: 52 of 72
            Pseudo Genes (internal stop)      :: 23 of 72
            Pseudo Genes (multiple problems)  :: 17 of 72
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4083417
                     /organism="Methanosarcina sp. 2.H.T.1A.3"
                     /mol_type="genomic DNA"
                     /strain="2.H.T.1A.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:1483597"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOX01000001-JJOX01000092
WGS_SCAFLD  NZ_JJOX01000001-NZ_JJOX01000092
//
LOCUS       NZ_JYHS01000000      1747364 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Acidiplasma sp. MBA-1, whole genome shotgun sequencing project.
ACCESSION   NZ_JYHS00000000
VERSION     NZ_JYHS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03333330
            Assembly: GCF_000949015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidiplasma sp. MBA-1
  ORGANISM  Acidiplasma sp. MBA-1
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1747364)
  AUTHORS   Bulaev,A.G.
  TITLE     Genome sequence of Acidiplasma sp. MBA-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1747364)
  AUTHORS   Bulaev,A.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2015) Bioinformatics, RIPCM, 1a Malaya
            Pirogovskaya, Moscow 119435, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JYHS00000000.1.
            The Acidiplasma sp. MBA-1 whole genome shotgun (WGS) project has
            the project accession NZ_JYHS00000000.  This version of the project
            (01) has the accession number NZ_JYHS01000000, and consists of
            sequences JYHS01000001-JYHS01000009.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MIRA v. 4
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 280.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000949015.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:02:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,864
            CDSs (total)                      :: 1,813
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 15 of 22
            Pseudo Genes (internal stop)      :: 5 of 22
            Pseudo Genes (multiple problems)  :: 4 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747364
                     /organism="Acidiplasma sp. MBA-1"
                     /mol_type="genomic DNA"
                     /strain="MBA-1"
                     /isolation_source="The pulp of bioleaching bioreactor"
                     /db_xref="taxon:1293648"
                     /geo_loc_name="Russia: Moscow"
                     /collection_date="2014"
WGS         JYHS01000001-JYHS01000009
WGS_SCAFLD  NZ_JYHS01000001-NZ_JYHS01000009
//
LOCUS       NZ_JJOZ01000000      4069731 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina sp. 2.H.T.1A.8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JJOZ00000000
VERSION     NZ_JJOZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708990
            Assembly: GCF_000979475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. 2.H.T.1A.8
  ORGANISM  Methanosarcina sp. 2.H.T.1A.8
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4069731)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4069731)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJOZ00000000.1.
            The Methanosarcina sp. 2.H.T.1A.8 whole genome shotgun (WGS)
            project has the project accession NZ_JJOZ00000000.  This version of
            the project (01) has the accession number NZ_JJOZ01000000, and
            consists of sequences JJOZ01000001-JJOZ01000069.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.2x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979475.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:23:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,509
            CDSs (total)                      :: 3,448
            Genes (coding)                    :: 3,383
            CDSs (with protein)               :: 3,383
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 14 of 65
            Pseudo Genes (incomplete)         :: 45 of 65
            Pseudo Genes (internal stop)      :: 23 of 65
            Pseudo Genes (multiple problems)  :: 16 of 65
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4069731
                     /organism="Methanosarcina sp. 2.H.T.1A.8"
                     /mol_type="genomic DNA"
                     /strain="2.H.T.1A.8"
                     /isolation_source="sediment"
                     /db_xref="taxon:1483598"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.2855 N 124.0519 W"
                     /collection_date="2011-08-22"
WGS         JJOZ01000001-JJOZ01000069
WGS_SCAFLD  NZ_JJOZ01000001-NZ_JJOZ01000069
//
LOCUS       NZ_JQKV01000000      2767363 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum sp. BV1, whole genome shotgun sequencing project.
ACCESSION   NZ_JQKV00000000
VERSION     NZ_JQKV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02787129
            Assembly: GCF_000746205.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Halorubrum sp. BV1
  ORGANISM  Halorubrum sp. BV1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 2767363)
  AUTHORS   King,G., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K.,
            Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A.,
            Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQKV00000000.1.
            The Halorubrum sp. BV1 whole genome shotgun (WGS) project has the
            project accession NZ_JQKV00000000.  This version of the project
            (01) has the accession number NZ_JQKV01000000, and consists of
            sequences JQKV01000001-JQKV01000043.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 1035453
            Source DNA and Organism available from Gary   King
            (gkingme@gmail.com)
            Source DNA available from Gary   King (gkingme@gmail.com)
            Organism available from Gary   King (gkingme@gmail.com)
            Contacts: Gary   King (gkingme@gmail.com)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            investigation_type :: bacteria_archaea
            project_name       :: Halorubrum sp. BV1
            sequencing_meth    :: WGS
            finishing_strategy :: Level 3: Improved-High-Quality Draft
            GOLD Stamp ID      :: Gi0072177
            Isolation Site     :: salt crust
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before Fri Aug 15
                                        11:07:12 PDT 2014
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina MiSeq; PacBio RS
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000746205.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:05:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,827
            CDSs (total)                      :: 2,756
            Genes (coding)                    :: 2,707
            CDSs (with protein)               :: 2,707
            Genes (RNA)                       :: 71
            rRNAs                             :: 2, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 4, 1 (16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 13 of 49
            Pseudo Genes (incomplete)         :: 42 of 49
            Pseudo Genes (internal stop)      :: 4 of 49
            Pseudo Genes (multiple problems)  :: 9 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767363
                     /organism="Halorubrum sp. BV1"
                     /mol_type="genomic DNA"
                     /strain="BV1"
                     /db_xref="taxon:1498500"
WGS         JQKV01000001-JQKV01000043
WGS_SCAFLD  NZ_JQKV01000001-NZ_JQKV01000002
WGS_SCAFLD  NZ_JQKV01000005-NZ_JQKV01000043
WGS_SCAFLD  NZ_KN050825
//
LOCUS       NZ_BBMP01000000      3764367 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halococcus sediminicola strain CBA1101, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBMP00000000
VERSION     NZ_BBMP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00019895
            Assembly: GCF_000755245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus sediminicola
  ORGANISM  Halococcus sediminicola
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequences of Halococcus sediminicola CBA1101
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3764367)
  AUTHORS   Roh,S.W. and Rhee,J.-K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2014) Contact:Seong Woon Roh Korea Basic Science
            Institute, Jeju Center; Cheomdan-ro 213-3, Jeju-si, Jeju-do
            690-140, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBMP00000000.1.
            The Halococcus sediminicola whole genome shotgun (WGS) project has
            the project accession NZ_BBMP00000000.  This version of the project
            (01) has the accession number NZ_BBMP01000000, and consists of
            sequences BBMP01000001-BBMP01000027.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC De novo assembly v. 7.0.4
            Genome Coverage       :: 308x
            Sequencing Technology :: MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000755245.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:09:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,882
            CDSs (total)                      :: 3,825
            Genes (coding)                    :: 3,696
            CDSs (with protein)               :: 3,696
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 53 of 129
            Pseudo Genes (incomplete)         :: 98 of 129
            Pseudo Genes (internal stop)      :: 24 of 129
            Pseudo Genes (multiple problems)  :: 39 of 129
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3764367
                     /organism="Halococcus sediminicola"
                     /mol_type="genomic DNA"
                     /strain="CBA1101"
                     /isolation_source="Non-purified solar salt"
                     /type_material="type strain of Halococcus sediminicola"
                     /db_xref="taxon:1264579"
                     /geo_loc_name="South Korea: The bay of Gangjin"
WGS         BBMP01000001-BBMP01000027
WGS_SCAFLD  NZ_BBMP01000001-NZ_BBMP01000027
//
LOCUS       NZ_JNFH02000000      3282373 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum saccharovorum strain H3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JNFH00000000
VERSION     NZ_JNFH00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02803665
            Assembly: GCF_000700025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum saccharovorum
  ORGANISM  Halorubrum saccharovorum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3282373)
  AUTHORS   Rozanov,A.S., Bryanskaya,A.V., Malup,T.K., Kotenko,A.V. and
            Peltek,S.E.
  TITLE     Draft genome sequence of a halorubrum h3 strain isolated from the
            burlinskoye salt lake (altai krai, Russia)
  JOURNAL   Genome Announc 3 (3), e00566-15 (2015)
   PUBMED   26044423
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3282373)
  AUTHORS   Rozanov,A.S., Kotenko,A.V., Bryanskaya,A.V., Malup,T.K. and
            Peltek,S.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2015) The Siberian Branch of the Russian Academy
            of Sciences, The Institute of Cytology and Genetics, Prospekt
            Lavrentyeva 10, Novosibirsk, Novosibirsk Region 630090, Russia
REFERENCE   3  (bases 1 to 3282373)
  AUTHORS   Rozanov,A.S., Bryanskaya,A.V., Kotenko,A.V. and Peltek,S.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2014) The Siberian Branch of the Russian Academy
            of Sciences, The Institute of Cytology and Genetics, Prospekt
            Lavrentyeva 10, Novosibirsk 630090, Russian Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JNFH00000000.2.
            The Halorubrum saccharovorum whole genome shotgun (WGS) project has
            the project accession NZ_JNFH00000000.  This version of the project
            (02) has the accession number NZ_JNFH02000000, and consists of
            sequences JNFH02000001-JNFH02000189.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000700025.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:17:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,512
            CDSs (total)                      :: 3,459
            Genes (coding)                    :: 2,550
            CDSs (with protein)               :: 2,550
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 909
            CDSs (without protein)            :: 909
            Pseudo Genes (ambiguous residues) :: 0 of 909
            Pseudo Genes (frameshifted)       :: 755 of 909
            Pseudo Genes (incomplete)         :: 219 of 909
            Pseudo Genes (internal stop)      :: 14 of 909
            Pseudo Genes (multiple problems)  :: 77 of 909
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3282373
                     /organism="Halorubrum saccharovorum"
                     /mol_type="genomic DNA"
                     /strain="H3"
                     /isolation_source="salt lake sediments"
                     /db_xref="taxon:2248"
                     /geo_loc_name="Russia: South of Western Siberia"
                     /lat_lon="54.23 N 78.22 E"
                     /collection_date="2007-08"
WGS         JNFH02000001-JNFH02000189
WGS_SCAFLD  NZ_JNFH02000001-NZ_JNFH02000189
//
LOCUS       NZ_JJQZ01000000      4076911 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.T.2.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQZ00000000
VERSION     NZ_JJQZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708973
            Assembly: GCF_000980135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4076911)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4076911)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQZ00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQZ00000000.  This version of the project
            (01) has the accession number NZ_JJQZ01000000, and consists of
            sequences JJQZ01000001-JJQZ01000159.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000980135.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:25:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,544
            CDSs (total)                      :: 3,483
            Genes (coding)                    :: 3,399
            CDSs (with protein)               :: 3,399
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 20 of 84
            Pseudo Genes (incomplete)         :: 63 of 84
            Pseudo Genes (internal stop)      :: 18 of 84
            Pseudo Genes (multiple problems)  :: 14 of 84
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076911
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.T.2.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQZ01000001-JJQZ01000159
WGS_SCAFLD  NZ_JJQZ01000001-NZ_JJQZ01000159
//
LOCUS       NZ_JJQG01000000      4044602 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.1A.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQG00000000
VERSION     NZ_JJQG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708957
            Assembly: GCF_000979915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4044602)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4044602)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQG00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQG00000000.  This version of the project
            (01) has the accession number NZ_JJQG01000000, and consists of
            sequences JJQG01000001-JJQG01000172.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.5x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979915.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:27:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,507
            CDSs (total)                      :: 3,446
            Genes (coding)                    :: 3,373
            CDSs (with protein)               :: 3,373
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 18 of 73
            Pseudo Genes (incomplete)         :: 52 of 73
            Pseudo Genes (internal stop)      :: 18 of 73
            Pseudo Genes (multiple problems)  :: 12 of 73
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4044602
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.1A.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQG01000001-JJQG01000172
WGS_SCAFLD  NZ_JJQG01000001-NZ_JJQG01000172
//
LOCUS       NZ_JJQF01000000      3967638 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.0.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQF00000000
VERSION     NZ_JJQF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708934
            Assembly: GCF_000979895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3967638)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3967638)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQF00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQF00000000.  This version of the project
            (01) has the accession number NZ_JJQF01000000, and consists of
            sequences JJQF01000001-JJQF01000157.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 45.3x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979895.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:25:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,434
            CDSs (total)                      :: 3,372
            Genes (coding)                    :: 3,312
            CDSs (with protein)               :: 3,312
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 15 of 60
            Pseudo Genes (incomplete)         :: 42 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 7 of 60
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3967638
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.0.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQF01000001-JJQF01000157
WGS_SCAFLD  NZ_JJQF01000001-NZ_JJQF01000157
//
LOCUS       NZ_JJQX01000000      4079099 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.M.2.4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQX00000000
VERSION     NZ_JJQX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708972
            Assembly: GCF_000980105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4079099)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4079099)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQX00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQX00000000.  This version of the project
            (01) has the accession number NZ_JJQX01000000, and consists of
            sequences JJQX01000001-JJQX01000260.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000980105.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:27:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,570
            CDSs (total)                      :: 3,518
            Genes (coding)                    :: 3,411
            CDSs (with protein)               :: 3,411
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 18 of 107
            Pseudo Genes (incomplete)         :: 88 of 107
            Pseudo Genes (internal stop)      :: 17 of 107
            Pseudo Genes (multiple problems)  :: 13 of 107
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4079099
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.M.2.4"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQX01000001-JJQX01000260
WGS_SCAFLD  NZ_JJQX01000001-NZ_JJQX01000260
//
LOCUS       NZ_JJQN01000000      4006298 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.2.6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQN00000000
VERSION     NZ_JJQN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708979
            Assembly: GCF_000979995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4006298)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4006298)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQN00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQN00000000.  This version of the project
            (01) has the accession number NZ_JJQN01000000, and consists of
            sequences JJQN01000001-JJQN01000204.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.9x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979995.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:28:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,480
            CDSs (total)                      :: 3,418
            Genes (coding)                    :: 3,361
            CDSs (with protein)               :: 3,361
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 16 of 57
            Pseudo Genes (incomplete)         :: 36 of 57
            Pseudo Genes (internal stop)      :: 13 of 57
            Pseudo Genes (multiple problems)  :: 6 of 57
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4006298
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.2.6"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQN01000001-JJQN01000204
WGS_SCAFLD  NZ_JJQN01000001-NZ_JJQN01000204
//
LOCUS       NZ_JJQC01000000      4053184 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.F.A.1B.4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQC00000000
VERSION     NZ_JJQC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708966
            Assembly: GCF_000979855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4053184)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4053184)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQC00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQC00000000.  This version of the project
            (01) has the accession number NZ_JJQC01000000, and consists of
            sequences JJQC01000001-JJQC01000171.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.4x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979855.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:25:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,528
            CDSs (total)                      :: 3,469
            Genes (coding)                    :: 3,393
            CDSs (with protein)               :: 3,393
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 17 of 76
            Pseudo Genes (incomplete)         :: 53 of 76
            Pseudo Genes (internal stop)      :: 14 of 76
            Pseudo Genes (multiple problems)  :: 7 of 76
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4053184
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.F.A.1B.4"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQC01000001-JJQC01000171
WGS_SCAFLD  NZ_JJQC01000001-NZ_JJQC01000171
//
LOCUS       NZ_JJQR01000000      4085193 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.M.1A.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQR00000000
VERSION     NZ_JJQR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708959
            Assembly: GCF_000980055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4085193)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4085193)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQR00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQR00000000.  This version of the project
            (01) has the accession number NZ_JJQR01000000, and consists of
            sequences JJQR01000001-JJQR01000175.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000980055.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:28:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,548
            CDSs (total)                      :: 3,487
            Genes (coding)                    :: 3,413
            CDSs (with protein)               :: 3,413
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 19 of 74
            Pseudo Genes (incomplete)         :: 53 of 74
            Pseudo Genes (internal stop)      :: 17 of 74
            Pseudo Genes (multiple problems)  :: 12 of 74
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4085193
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.M.1A.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQR01000001-JJQR01000175
WGS_SCAFLD  NZ_JJQR01000001-NZ_JJQR01000175
//
LOCUS       NZ_JJQQ01000000      4063806 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.M.0.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQQ00000000
VERSION     NZ_JJQQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708970
            Assembly: GCF_000980025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4063806)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4063806)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQQ00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQQ00000000.  This version of the project
            (01) has the accession number NZ_JJQQ01000000, and consists of
            sequences JJQQ01000001-JJQQ01000176.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.2x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000980025.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:25:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,521
            CDSs (total)                      :: 3,460
            Genes (coding)                    :: 3,389
            CDSs (with protein)               :: 3,389
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 19 of 71
            Pseudo Genes (incomplete)         :: 49 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 12 of 71
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4063806
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.M.0.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQQ01000001-JJQQ01000176
WGS_SCAFLD  NZ_JJQQ01000001-NZ_JJQQ01000176
//
LOCUS       NZ_JJQK01000000      3997775 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.2.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQK00000000
VERSION     NZ_JJQK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708978
            Assembly: GCF_000979935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3997775)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3997775)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQK00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQK00000000.  This version of the project
            (01) has the accession number NZ_JJQK01000000, and consists of
            sequences JJQK01000001-JJQK01000294.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 45.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979935.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:29:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,483
            CDSs (total)                      :: 3,422
            Genes (coding)                    :: 3,350
            CDSs (with protein)               :: 3,350
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 19 of 72
            Pseudo Genes (incomplete)         :: 49 of 72
            Pseudo Genes (internal stop)      :: 14 of 72
            Pseudo Genes (multiple problems)  :: 9 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3997775
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.2.1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQK01000001-JJQK01000294
WGS_SCAFLD  NZ_JJQK01000001-NZ_JJQK01000294
//
LOCUS       NZ_JJQW01000000      3977613 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.M.2.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQW00000000
VERSION     NZ_JJQW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708940
            Assembly: GCF_000980075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3977613)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3977613)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQW00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQW00000000.  This version of the project
            (01) has the accession number NZ_JJQW01000000, and consists of
            sequences JJQW01000001-JJQW01000142.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 45.2x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000980075.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:30:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,457
            CDSs (total)                      :: 3,396
            Genes (coding)                    :: 3,320
            CDSs (with protein)               :: 3,320
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 20 of 76
            Pseudo Genes (incomplete)         :: 56 of 76
            Pseudo Genes (internal stop)      :: 17 of 76
            Pseudo Genes (multiple problems)  :: 14 of 76
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3977613
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.M.2.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQW01000001-JJQW01000142
WGS_SCAFLD  NZ_JJQW01000001-NZ_JJQW01000142
//
LOCUS       NZ_JJQJ01000000      4079528 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.A.1A.6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQJ00000000
VERSION     NZ_JJQJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708969
            Assembly: GCF_000979925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4079528)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4079528)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQJ00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQJ00000000.  This version of the project
            (01) has the accession number NZ_JJQJ01000000, and consists of
            sequences JJQJ01000001-JJQJ01000231.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000979925.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 22:38:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,530
            CDSs (total)                      :: 3,470
            Genes (coding)                    :: 3,387
            CDSs (with protein)               :: 3,387
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 21 of 83
            Pseudo Genes (incomplete)         :: 61 of 83
            Pseudo Genes (internal stop)      :: 17 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4079528
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.A.1A.6"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQJ01000001-JJQJ01000231
WGS_SCAFLD  NZ_JJQJ01000001-NZ_JJQJ01000231
//
LOCUS       NZ_JJQT01000000      4081407 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.M.1A.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJQT00000000
VERSION     NZ_JJQT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708971
            Assembly: GCF_000980085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4081407)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4081407)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJQT00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJQT00000000.  This version of the project
            (01) has the accession number NZ_JJQT01000000, and consists of
            sequences JJQT01000001-JJQT01000257.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000980085.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 23:10:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,583
            CDSs (total)                      :: 3,525
            Genes (coding)                    :: 3,432
            CDSs (with protein)               :: 3,432
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 18 of 93
            Pseudo Genes (incomplete)         :: 72 of 93
            Pseudo Genes (internal stop)      :: 19 of 93
            Pseudo Genes (multiple problems)  :: 13 of 93
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4081407
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.M.1A.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJQT01000001-JJQT01000257
WGS_SCAFLD  NZ_JJQT01000001-NZ_JJQT01000257
//
LOCUS       NZ_JXOJ01000000      2488374 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanoculleus sediminis strain S3Fa, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JXOJ00000000
VERSION     NZ_JXOJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03288802
            Assembly: GCF_001017125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus sediminis
  ORGANISM  Methanoculleus sediminis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2488374)
  AUTHORS   Chen,S.C., Chen,M.F., Lai,M.C., Weng,C.Y., Wu,S.Y., Lin,S.,
            Yang,T.F. and Chen,P.C.
  TITLE     Methanoculleus sediminis sp. nov., a methanogen from sediments near
            a submarine mud volcano
  JOURNAL   Int J Syst Evol Microbiol 65 (7), 2141-2147 (2015)
   PUBMED   25855623
REFERENCE   2  (bases 1 to 2488374)
  AUTHORS   Chen,S.-C., Chen,M.-F., Weng,C.-Y., Lai,M.-C. and You,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2015) Department of Life Sciences, National Chung
            Hsing University, 250 Kuo Kuang Rd, Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JXOJ00000000.1.
            The Methanoculleus sediminis whole genome shotgun (WGS) project has
            the project accession NZ_JXOJ00000000.  This version of the project
            (01) has the accession number NZ_JXOJ01000000, and consists of
            sequences JXOJ01000001-JXOJ01000015.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2014
            Assembly Method        :: CLC Genomic Workbench v. 7.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 562.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001017125.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 23:10:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,517
            CDSs (total)                      :: 2,464
            Genes (coding)                    :: 2,454
            CDSs (with protein)               :: 2,454
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 9 of 10
            Pseudo Genes (internal stop)      :: 1 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488374
                     /organism="Methanoculleus sediminis"
                     /mol_type="genomic DNA"
                     /strain="S3Fa"
                     /isolation_source="deep-sea sediment"
                     /culture_collection="DSM:29354"
                     /type_material="type strain of Methanoculleus sediminis"
                     /db_xref="taxon:1550566"
                     /geo_loc_name="Taiwan: SW, 96 Mud Volcano Group, Offshore"
                     /lat_lon="22.14383 N 120.32483 E"
                     /collection_date="2010-07"
                     /collected_by="ORI-934 cruise"
                     /identified_by="Mei-Fei Chen"
WGS         JXOJ01000001-JXOJ01000015
WGS_SCAFLD  NZ_JXOJ01000001-NZ_JXOJ01000015
//
LOCUS       NZ_JJRB01000000      4085119 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.T.2.5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJRB00000000
VERSION     NZ_JJRB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708942
            Assembly: GCF_000980175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4085119)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 4085119)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJRB00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJRB00000000.  This version of the project
            (01) has the accession number NZ_JJRB01000000, and consists of
            sequences JJRB01000001-JJRB01000142.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 44.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000980175.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 23:09:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,546
            CDSs (total)                      :: 3,485
            Genes (coding)                    :: 3,403
            CDSs (with protein)               :: 3,403
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 19 of 82
            Pseudo Genes (incomplete)         :: 61 of 82
            Pseudo Genes (internal stop)      :: 19 of 82
            Pseudo Genes (multiple problems)  :: 14 of 82
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4085119
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.T.2.5"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJRB01000001-JJRB01000142
WGS_SCAFLD  NZ_JJRB01000001-NZ_JJRB01000142
//
LOCUS       NZ_JJRA01000000      3971658 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina mazei strain 1.H.T.2.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JJRA00000000
VERSION     NZ_JJRA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02708941
            Assembly: GCF_000980155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3971658)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Smith,M., Simon,H.,
            Metcalf,W.W. and Whitaker,R.J.
  TITLE     Genomic and phenotypic differentiation among Methanosarcina mazei
            populations from Columbia River sediment
  JOURNAL   ISME J 9 (10), 2191-2205 (2015)
   PUBMED   25756680
REFERENCE   2  (bases 1 to 3971658)
  AUTHORS   Youngblut,N.D., Wirth,J.S., Henriksen,J.R., Metcalf,W.W. and
            Whitaker,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2014) Microbiology, University of Illinois at
            Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JJRA00000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JJRA00000000.  This version of the project
            (01) has the accession number NZ_JJRA01000000, and consists of
            sequences JJRA01000001-JJRA01000148.
            Bacteria and source DNA available from Rachel J. Whitaker,
            University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue,
            Urbana, IL, 61801, USA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 1.1.0
            Assembly Name         :: gtlEnvA5udCFS
            Genome Coverage       :: 45.3x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000980155.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 23:10:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,454
            CDSs (total)                      :: 3,393
            Genes (coding)                    :: 3,315
            CDSs (with protein)               :: 3,315
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 18 of 78
            Pseudo Genes (incomplete)         :: 60 of 78
            Pseudo Genes (internal stop)      :: 18 of 78
            Pseudo Genes (multiple problems)  :: 15 of 78
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3971658
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="1.H.T.2.3"
                     /isolation_source="sediment"
                     /db_xref="taxon:2209"
                     /geo_loc_name="USA: Columbia River Estuary, north of
                     Astoria, OR"
                     /lat_lon="46.17467 N 123.8493 W"
                     /collection_date="2011-08-22"
WGS         JJRA01000001-JJRA01000148
WGS_SCAFLD  NZ_JJRA01000001-NZ_JJRA01000148
//
LOCUS       NZ_JMIP02000000      3178490 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halostagnicola sp. A56, whole genome shotgun sequencing project.
ACCESSION   NZ_JMIP00000000
VERSION     NZ_JMIP00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02739884
            Assembly: GCF_000691505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostagnicola sp. A56
  ORGANISM  Halostagnicola sp. A56
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halostagnicola.
REFERENCE   1  (bases 1 to 3178490)
  AUTHORS   Pore,S.D., Kanekar,S.P., Arora,P., Saxena,N. and Dhakephalkar,P.K.
  TITLE     Draft genome of Halostagnicola sp. A56 isolated from Andaman
            Islands, India
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3178490)
  AUTHORS   Pore,S.D., Kanekar,S.P., Arora,P., Saxena,N. and Dhakephalkar,P.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2015) Bioenergy, Agharkar Research Institute, G.
            G. Agarkar Road, Pune, Maharastra 411004, India
REFERENCE   3  (bases 1 to 3178490)
  AUTHORS   Kanekar,S.P., Arora,P. and Dhakephalkar,P.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2014) Microbial Sciences Division, Agharkar
            Research Institute, G.G Agarkar Road, Pune, Maharastra 411004,
            India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JMIP00000000.2.
            The Halostagnicola sp. A56 whole genome shotgun (WGS) project has
            the project accession NZ_JMIP00000000.  This version of the project
            (02) has the accession number NZ_JMIP02000000, and consists of
            sequences JMIP02000001-JMIP02000026.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: MIRA v. 4.0.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 36.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000691505.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 23:29:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,369
            CDSs (total)                      :: 3,321
            Genes (coding)                    :: 2,970
            CDSs (with protein)               :: 2,970
            Genes (RNA)                       :: 48
            rRNAs                             :: 3, 1 (5S, 16S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 351
            CDSs (without protein)            :: 351
            Pseudo Genes (ambiguous residues) :: 0 of 351
            Pseudo Genes (frameshifted)       :: 137 of 351
            Pseudo Genes (incomplete)         :: 249 of 351
            Pseudo Genes (internal stop)      :: 36 of 351
            Pseudo Genes (multiple problems)  :: 55 of 351
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3178490
                     /organism="Halostagnicola sp. A56"
                     /mol_type="genomic DNA"
                     /strain="A56"
                     /db_xref="taxon:1495067"
                     /geo_loc_name="India: North Bay, Andaman Islands"
                     /collection_date="2009-05"
                     /collected_by="Dr P K Dhakephalkar"
                     /identified_by="Dr P K Dhakephalkar"
WGS         JMIP02000001-JMIP02000026
WGS_SCAFLD  NZ_JMIP02000001-NZ_JMIP02000026
//
LOCUS       NZ_ATYM01000000      3797735 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloplanus natans DSM 17983, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ATYM00000000
VERSION     NZ_ATYM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02440896
            Assembly: GCF_000427685.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Haloplanus natans DSM 17983
  ORGANISM  Haloplanus natans DSM 17983
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3797735)
  AUTHORS   Eisen,J., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ATYM00000000.1.
            The Haloplanus natans DSM 17983 whole genome shotgun (WGS) project
            has the project accession NZ_ATYM00000000.  This version of the
            project (01) has the accession number NZ_ATYM01000000, and consists
            of sequences ATYM01000001-ATYM01000010.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 403681
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan  Eisen (jaeisen@ucdavis.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI
            Annotation by JGI
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            assembly            :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap
                                   v. 4.24
            country             :: Israel
            environment         :: Mud; Aquatic; Marine
            investigation_type  :: bacteria_archaea
            lat_lon             :: 31.1 35.383333
            project_name        :: Haloplanus natans RE 101, DSM 17983
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 17983
            biotic_relationship :: Free living
            GOLD Stamp ID       :: Gi05075
            Type Strain         :: Yes
            Funding Program     :: DOE-CSP 2011
            Isolation Site      :: Experimental mesocosm filled with a mixture
                                   of water from the Dead Sea and the Red Sea;
                                   Israel, Sedom.
            Temperature Range   :: Mesophile
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.05; ALLPATHS v. r38445;
                                        Phrap v. 4.24
            Genome Coverage          :: Unknown
            Sequencing Technology    :: 454-GS-FLX-Titanium; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000427685.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:13:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,001
            CDSs (total)                      :: 3,934
            Genes (coding)                    :: 3,831
            CDSs (with protein)               :: 3,831
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 38 of 103
            Pseudo Genes (incomplete)         :: 70 of 103
            Pseudo Genes (internal stop)      :: 18 of 103
            Pseudo Genes (multiple problems)  :: 21 of 103
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3797735
                     /organism="Haloplanus natans DSM 17983"
                     /mol_type="genomic DNA"
                     /strain="DSM 17983"
                     /culture_collection="DSM:17983"
                     /type_material="type strain of Haloplanus natans"
                     /db_xref="taxon:926690"
                     /geo_loc_name="Israel"
                     /lat_lon="31.1 N 35.383333 E"
WGS         ATYM01000001-ATYM01000010
WGS_SCAFLD  NZ_ATYM01000003-NZ_ATYM01000005
WGS_SCAFLD  NZ_ATYM01000008-NZ_ATYM01000010
WGS_SCAFLD  NZ_KE386573-NZ_KE386574
//
LOCUS       NZ_ARPY01000000      3578347 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Haloquadratum walsbyi J07HQW2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ARPY00000000
VERSION     NZ_ARPY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN01940911
            Assembly: GCF_000415985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Haloquadratum walsbyi J07HQW2 (hypersaline lake metagenome)
  ORGANISM  Haloquadratum walsbyi J07HQW2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloquadratum.
REFERENCE   1  (bases 1 to 3578347)
  AUTHORS   Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F.,
            Heidelberg,K.B. and Allen,E.E.
  TITLE     Assembly-driven community genomics of a hypersaline microbial
            ecosystem
  JOURNAL   PLoS One 8 (4), e61692 (2013)
   PUBMED   23637883
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3578347)
  AUTHORS   Podell,S., Ugalde,J.A., Narasingarao,P., Heidelberg,K.B.,
            Banfield,J.F. and Allen,E.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2013) Scripps Institution of Oceanography,
            University of California, San Diego, 9500 Gilman Drive, La Jolla,
            CA 92093-0202, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ARPY00000000.1.
            The Haloquadratum walsbyi J07HQW2 whole genome shotgun (WGS)
            project has the project accession NZ_ARPY00000000.  This version of
            the project (01) has the accession number NZ_ARPY01000000, and
            consists of sequences ARPY01000001-ARPY01000187.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Celera Assembler v. 5.4
            Assembly Name         :: HQW2_08err_032412a
            Genome Coverage       :: 8.7x
            Sequencing Technology :: Sanger
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000415985.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:15:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,595
            CDSs (total)                      :: 3,545
            Genes (coding)                    :: 3,244
            CDSs (with protein)               :: 3,244
            Genes (RNA)                       :: 50
            rRNAs                             :: 1 (16S)
            complete rRNAs                    :: 1 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 301
            CDSs (without protein)            :: 301
            Pseudo Genes (ambiguous residues) :: 0 of 301
            Pseudo Genes (frameshifted)       :: 161 of 301
            Pseudo Genes (incomplete)         :: 190 of 301
            Pseudo Genes (internal stop)      :: 66 of 301
            Pseudo Genes (multiple problems)  :: 97 of 301
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578347
                     /organism="Haloquadratum walsbyi J07HQW2"
                     /mol_type="genomic DNA"
                     /isolation_source="filtered surface water from Lake
                     Tyrrell"
                     /db_xref="taxon:1238425"
                     /environmental_sample
                     /geo_loc_name="Australia: Victoria"
                     /lat_lon="35.309 S 142.7795 E"
                     /collection_date="Jan-2007"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         ARPY01000001-ARPY01000187
WGS_SCAFLD  NZ_KE356561
//
LOCUS       NZ_AFNT02000000      3146564 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorhabdus tiamatea SARL4B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AFNT00000000
VERSION     NZ_AFNT00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02472187
            Assembly: GCF_000215915.2
KEYWORDS    WGS; RefSeq.
SOURCE      Halorhabdus tiamatea SARL4B
  ORGANISM  Halorhabdus tiamatea SARL4B
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorhabdus.
REFERENCE   1  (bases 1 to 3146564)
  AUTHORS   Alam,I., Antunes,A., Kamau,A.A., Ba Alawi,W., Kalkatawi,M.,
            Stingl,U. and Bajic,V.B.
  TITLE     INDIGO - INtegrated data warehouse of microbial genomes with
            examples from the red sea extremophiles
  JOURNAL   PLoS One 8 (12), e82210 (2013)
   PUBMED   24324765
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3146564)
  AUTHORS   Antunes,A., Alam,I., Bajic,V.B. and Stingl,U.
  TITLE     Genome sequence of Halorhabdus tiamatea, the first archaeon
            isolated from a deep-sea anoxic brine lake
  JOURNAL   J Bacteriol 193 (17), 4553-4554 (2011)
   PUBMED   21705593
REFERENCE   3  (bases 1 to 3146564)
  AUTHORS   Antunes,A., Alam,I., Bajic,V.B. and Stingl,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUL-2013) Computational Bioscience Research Center
            (CBRC), Red Sea Research Center, King Abdullah University of
            Science and Technology, Thuwal, Makkah 23955-6900, Kindgom of Saudi
            Arabia
REFERENCE   4  (bases 1 to 3146564)
  AUTHORS   Antunes,A., Alam,I., Bajic,V.B. and Stingl,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAY-2011) Computational Bioscience Research Center
            (CBRC), Red Sea Research Center, 4700 King Abdullah University of
            Science and Technology, Thuwal, Makkah 23955-6900, Kindgom of Saudi
            Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AFNT00000000.2.
            
            On Sep 16, 2013 this sequence version replaced NZ_AFNT00000000.1.
            The Halorhabdus tiamatea SARL4B whole genome shotgun (WGS) project
            has the project accession NZ_AFNT00000000.  This version of the
            project (02) has the accession number NZ_AFNT02000000, and consists
            of sequences AFNT02000001-AFNT02000072.
            Annotated using MGAP at KAUST.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8; SOAPdenovo v. Oct-2011;
                                     Velvet v. Jun-2013; v. CISA v. 2013
            Assembly Name         :: HLRTI_V2
            Genome Coverage       :: 400.0x
            Sequencing Technology :: 454; Illumina GAII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000215915.2-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:04:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,259
            CDSs (total)                      :: 3,211
            Genes (coding)                    :: 3,103
            CDSs (with protein)               :: 3,103
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 41 of 108
            Pseudo Genes (incomplete)         :: 72 of 108
            Pseudo Genes (internal stop)      :: 11 of 108
            Pseudo Genes (multiple problems)  :: 16 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3146564
                     /organism="Halorhabdus tiamatea SARL4B"
                     /mol_type="genomic DNA"
                     /strain="SARL4B"
                     /isolation_source="sediment-brine interface of the Shaban
                     Deep in the Red Sea"
                     /culture_collection="DSM:18392"
                     /type_material="type strain of Halorhabdus tiamatea"
                     /db_xref="taxon:1033806"
                     /geo_loc_name="Saudi Arabia: Thuwal"
WGS         AFNT02000001-AFNT02000072
WGS_SCAFLD  NZ_AFNT02000001-NZ_AFNT02000072
//
LOCUS       NZ_AOLH01000000      3619064 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax volcanii DSM 14919, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLH00000000
VERSION     NZ_AOLH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471684
            Assembly: GCF_000336795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii DSM 14919
  ORGANISM  Haloferax volcanii DSM 14919
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3619064)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3619064)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLH00000000.1.
            The Haloferax volcanii DSM 14919 whole genome shotgun (WGS) project
            has the project accession NZ_AOLH00000000.  This version of the
            project (01) has the accession number NZ_AOLH01000000, and consists
            of sequences AOLH01000001-AOLH01000033.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336795.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:51:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,722
            CDSs (total)                      :: 3,657
            Genes (coding)                    :: 3,583
            CDSs (with protein)               :: 3,583
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 7 (23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 36 of 74
            Pseudo Genes (incomplete)         :: 37 of 74
            Pseudo Genes (internal stop)      :: 9 of 74
            Pseudo Genes (multiple problems)  :: 8 of 74
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619064
                     /organism="Haloferax volcanii DSM 14919"
                     /mol_type="genomic DNA"
                     /strain="DSM 14919"
                     /culture_collection="DSM:14919"
                     /type_material="type strain of Haloferax lucentense"
                     /db_xref="taxon:1230452"
WGS         AOLH01000001-AOLH01000033
WGS_SCAFLD  NZ_AOLH01000001-NZ_AOLH01000033
//
LOCUS       NZ_BATA01000000      2628974 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halarchaeum acidiphilum MH1-52-1 strain JCM 16109, whole genome
            shotgun sequencing project.
ACCESSION   NZ_BATA00000000
VERSION     NZ_BATA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00036764
            Assembly: GCF_000474235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum acidiphilum MH1-52-1
  ORGANISM  Halarchaeum acidiphilum MH1-52-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1
  AUTHORS   Shimane,Y., Minegishi,H., Nishi,S., Echigo,A., Shuto,A.,
            Konishi,M., Ito,T., Ohkuma,M., Ohta,Y., Nagano,Y., Tsubouchi,T.,
            Mori,K., Usui,K., Kamekura,M., Usami,R., Takaki,Y. and Hatada,Y.
  TITLE     Whole genome sequencing of Halarchaeum acidiphilum strain MH1-52-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2628974)
  AUTHORS   Shimane,Y., Minegishi,H., Nishi,S., Echigo,A., Shuto,A.,
            Konishi,M., Ito,T., Ohkuma,M., Ohta,Y., Nagano,Y., Tsubouchi,T.,
            Mori,K., Usui,K., Kamekura,M., Usami,R., Takaki,Y. and Hatada,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2013) Contact:Shinro Nishi Japan Agency for
            Marine-Earth Science and Technology (JAMSTEC); Natsushima-Cho 2-15,
            Yokosuka, Kanagawa 237-0061, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BATA00000000.1.
            The Halarchaeum acidiphilum MH1-52-1 whole genome shotgun (WGS)
            project has the project accession NZ_BATA00000000.  This version of
            the project (01) has the accession number NZ_BATA01000000, and
            consists of sequences BATA01000001-BATA01000165.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC De novo assembly v. 6.01
            Genome Coverage       :: 78x
            Sequencing Technology :: Ion torrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000474235.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:06:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,857
            CDSs (total)                      :: 2,805
            Genes (coding)                    :: 2,528
            CDSs (with protein)               :: 2,528
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 277
            CDSs (without protein)            :: 277
            Pseudo Genes (ambiguous residues) :: 0 of 277
            Pseudo Genes (frameshifted)       :: 177 of 277
            Pseudo Genes (incomplete)         :: 114 of 277
            Pseudo Genes (internal stop)      :: 17 of 277
            Pseudo Genes (multiple problems)  :: 31 of 277
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628974
                     /organism="Halarchaeum acidiphilum MH1-52-1"
                     /mol_type="genomic DNA"
                     /strain="JCM 16109"
                     /type_material="type strain of Halarchaeum acidiphilum"
                     /db_xref="taxon:1261545"
WGS         BATA01000001-BATA01000165
WGS_SCAFLD  NZ_BATA01000001-NZ_BATA01000165
//
LOCUS       NZ_CVRT01000000      3247879 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum sp. SD626R, whole genome shotgun sequencing project.
ACCESSION   NZ_CVRT00000000
VERSION     NZ_CVRT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3432861
            Assembly: GCF_001261915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SD626R
  ORGANISM  Halorubrum sp. SD626R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Infante MC,carmen.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2015) University seville, Microbiology and
            Parasitology, C/ Profesor Garcia Gonzalez,2, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CVRT00000000.1.
            The Halorubrum sp. SD626R whole genome shotgun (WGS) project has
            the project accession NZ_CVRT00000000.  This version of the project
            (01) has the accession number NZ_CVRT01000000, and consists of
            sequences CVRT01000001-CVRT01000159.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001261915.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 02:41:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,353
            CDSs (total)                      :: 3,298
            Genes (coding)                    :: 3,167
            CDSs (with protein)               :: 3,167
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 23 of 131
            Pseudo Genes (incomplete)         :: 106 of 131
            Pseudo Genes (internal stop)      :: 19 of 131
            Pseudo Genes (multiple problems)  :: 15 of 131
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3247879
                     /organism="Halorubrum sp. SD626R"
                     /mol_type="genomic DNA"
                     /strain="SD626R"
                     /isolation_source="water"
                     /db_xref="taxon:1419722"
                     /geo_loc_name="Namibia"
                     /collection_date="2013-05-15"
WGS         CVRT01000001-CVRT01000159
WGS_SCAFLD  NZ_CVRT01000001-NZ_CVRT01000159
//
LOCUS       NZ_LIST01000000      3567018 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum tropicale strain 5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LIST00000000
VERSION     NZ_LIST00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04009067
            Assembly: GCF_001280455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum tropicale
  ORGANISM  Halorubrum tropicale
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3567018)
  AUTHORS   Sanchez-Nieves,R.L. and Montalvo-Rodriguez,R.
  TITLE     Genomes of Isolates from Cabo Rojo, PR
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3567018)
  AUTHORS   Sanchez-Nieves,R.L. and Montalvo-Rodriguez,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2015) Biology, UPR- Mayaguez, Post, Mayaguez
            00681, Puerto Rico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LIST00000000.1.
            The Halorubrum tropicale whole genome shotgun (WGS) project has the
            project accession NZ_LIST00000000.  This version of the project
            (01) has the accession number NZ_LIST01000000, and consists of
            sequences LIST01000001-LIST01000017.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: NGEN Assembler v. Jun-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001280455.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 02:49:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,700
            CDSs (total)                      :: 3,647
            Genes (coding)                    :: 3,555
            CDSs (with protein)               :: 3,555
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 27 of 92
            Pseudo Genes (incomplete)         :: 69 of 92
            Pseudo Genes (internal stop)      :: 13 of 92
            Pseudo Genes (multiple problems)  :: 15 of 92
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3567018
                     /organism="Halorubrum tropicale"
                     /mol_type="genomic DNA"
                     /strain="5"
                     /isolation_source="hypersaline pond"
                     /db_xref="taxon:1765655"
                     /geo_loc_name="Puerto Rico: Cabo Rojo"
                     /collection_date="2015-08"
                     /collected_by="Ruben Sanchez"
                     /identified_by="Dr. Rafael Montalvo"
WGS         LIST01000001-LIST01000017
WGS_SCAFLD  NZ_LIST01000001-NZ_LIST01000017
//
LOCUS       NZ_AOLJ01000000      4057322 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax gibbonsii ATCC 33959, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLJ00000000
VERSION     NZ_AOLJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471685
            Assembly: GCF_000336775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax gibbonsii ATCC 33959
  ORGANISM  Haloferax gibbonsii ATCC 33959
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4057322)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4057322)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLJ00000000.1.
            The Haloferax gibbonsii ATCC 33959 whole genome shotgun (WGS)
            project has the project accession NZ_AOLJ00000000.  This version of
            the project (01) has the accession number NZ_AOLJ01000000, and
            consists of sequences AOLJ01000001-AOLJ01000030.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336775.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:50:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,083
            CDSs (total)                      :: 4,017
            Genes (coding)                    :: 3,946
            CDSs (with protein)               :: 3,946
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 32 of 71
            Pseudo Genes (incomplete)         :: 43 of 71
            Pseudo Genes (internal stop)      :: 13 of 71
            Pseudo Genes (multiple problems)  :: 14 of 71
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4057322
                     /organism="Haloferax gibbonsii ATCC 33959"
                     /mol_type="genomic DNA"
                     /strain="ATCC 33959"
                     /culture_collection="ATCC:33959"
                     /type_material="type strain of Haloferax gibbonsii"
                     /db_xref="taxon:1227459"
WGS         AOLJ01000001-AOLJ01000030
WGS_SCAFLD  NZ_AOLJ01000001-NZ_AOLJ01000030
//
LOCUS       NZ_JPES01000000      4223705 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax sp. ATB1, whole genome shotgun sequencing project.
ACCESSION   NZ_JPES00000000
VERSION     NZ_JPES00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02850979
            Assembly: GCF_000730175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. ATB1
  ORGANISM  Haloferax sp. ATB1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4223705)
  AUTHORS   Castro Wde,O., Torres-Ballesteros,A.M., Nakayama,C.R., Melo,I.S.,
            Pellizari,V.H., Silva,A. and Ramos,R.T.
  TITLE     Draft Genome Sequence of Haloferax sp. Strain ATB1, Isolated from a
            Semi-Arid Region in the Brazilian Caatinga
  JOURNAL   Genome Announc 2 (4), e00812-14 (2014)
   PUBMED   25125649
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4223705)
  AUTHORS   Castro,W.O., Ballesteros,A.T., Nakayama,C.R., Melo,I.S.,
            Pellizari,V.H., Silva,A.C. and Ramos,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2014) Biological Science Institute, Universidade
            Federal do Para, Av. Augusto Correa, 01, Belem, Para, Brasil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JPES00000000.1.
            The Haloferax sp. ATB1 whole genome shotgun (WGS) project has the
            project accession NZ_JPES00000000.  This version of the project
            (01) has the accession number NZ_JPES01000000, and consists of
            sequences JPES01000001-JPES01000120.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2014
            Assembly Method       :: MIRA v. 4.0.2; CLC genomics workbench v.
                                     7.0; SeqMan pro v. 11; SPAdes v. 3.1; CISA
                                     v. 1.3
            Genome Coverage       :: 224.0x
            Sequencing Technology :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000730175.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:46:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,191
            CDSs (total)                      :: 4,154
            Genes (coding)                    :: 3,622
            CDSs (with protein)               :: 3,622
            Genes (RNA)                       :: 37
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 532
            CDSs (without protein)            :: 532
            Pseudo Genes (ambiguous residues) :: 0 of 532
            Pseudo Genes (frameshifted)       :: 414 of 532
            Pseudo Genes (incomplete)         :: 154 of 532
            Pseudo Genes (internal stop)      :: 34 of 532
            Pseudo Genes (multiple problems)  :: 61 of 532
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4223705
                     /organism="Haloferax sp. ATB1"
                     /mol_type="genomic DNA"
                     /strain="ATB1"
                     /isolation_source="Brazilian Caatinga soil"
                     /db_xref="taxon:1508454"
                     /geo_loc_name="Brazil: Northeast Region"
                     /lat_lon="7.3575 S 36.4914 W"
                     /collection_date="2010-04-12"
WGS         JPES01000001-JPES01000120
WGS_SCAFLD  NZ_JPES01000001-NZ_JPES01000120
//
LOCUS       NZ_JDTH01000000      3926724 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haladaptatus cibarius D43, whole genome shotgun sequencing project.
ACCESSION   NZ_JDTH00000000
VERSION     NZ_JDTH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02629026
            Assembly: GCF_000710615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus cibarius D43
  ORGANISM  Haladaptatus cibarius D43
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 3926724)
  AUTHORS   Lee,H.W., Kim,D.W., Lee,M.H., Kim,B.Y., Cho,Y.J., Yim,K.J.,
            Song,H.S., Rhee,J.K., Seo,M.J., Choi,H.J., Choi,J.S., Lee,D.G.,
            Yoon,C., Nam,Y.D. and Roh,S.W.
  TITLE     Draft genome sequence of the extremely halophilic archaeon
            Haladaptatus cibarius type strain D43(T) isolated from fermented
            seafood
  JOURNAL   Stand Genomic Sci 10, 53 (2015)
   PUBMED   26380039
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3926724)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2014) Jeju Center, Korea Basic Science Institute,
            Jeju-si, Jeju-do 690-140, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JDTH00000000.1.
            The Haladaptatus cibarius D43 whole genome shotgun (WGS) project
            has the project accession NZ_JDTH00000000.  This version of the
            project (01) has the accession number NZ_JDTH01000000, and consists
            of sequences JDTH01000001-JDTH01000013.
            Bacteria available from DSM 19505, JCM 15962.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2013
            Assembly Method        :: CLC Genomics Workbench v. 6.5.1; SMRT
                                      Analysis v. 2.1
            Assembly Name          :: HAPD43.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 710.25x
            Sequencing Technology  :: Illumina MiSeq; SMRT Analysis; SMRT
                                      Analysis
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000710615.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:20:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,133
            CDSs (total)                      :: 4,078
            Genes (coding)                    :: 4,023
            CDSs (with protein)               :: 4,023
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 17 of 55
            Pseudo Genes (incomplete)         :: 41 of 55
            Pseudo Genes (internal stop)      :: 5 of 55
            Pseudo Genes (multiple problems)  :: 8 of 55
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3926724
                     /organism="Haladaptatus cibarius D43"
                     /mol_type="genomic DNA"
                     /strain="D43"
                     /isolation_source="Traditional salt-fermented seafood in
                     Korea"
                     /culture_collection="DSM:19505"
                     /culture_collection="JCM:15962"
                     /type_material="type strain of Haladaptatus cibarius"
                     /db_xref="taxon:1455608"
                     /geo_loc_name="South Korea"
                     /collection_date="2013"
WGS         JDTH01000001-JDTH01000013
WGS_SCAFLD  NZ_JDTH01000001-NZ_JDTH01000013
//
LOCUS       NZ_AOLY01000000      4280359 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarcula japonica DSM 6131, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLY00000000
VERSION     NZ_AOLY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471638
            Assembly: GCF_000336635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula japonica DSM 6131
  ORGANISM  Haloarcula japonica DSM 6131
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4280359)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4280359)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLY00000000.1.
            The Haloarcula japonica DSM 6131 whole genome shotgun (WGS) project
            has the project accession NZ_AOLY00000000.  This version of the
            project (01) has the accession number NZ_AOLY01000000, and consists
            of sequences AOLY01000001-AOLY01000048.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336635.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:52:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,347
            CDSs (total)                      :: 4,285
            Genes (coding)                    :: 4,179
            CDSs (with protein)               :: 4,179
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 3, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 8 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 54 of 106
            Pseudo Genes (incomplete)         :: 69 of 106
            Pseudo Genes (internal stop)      :: 33 of 106
            Pseudo Genes (multiple problems)  :: 37 of 106
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4280359
                     /organism="Haloarcula japonica DSM 6131"
                     /mol_type="genomic DNA"
                     /strain="DSM 6131"
                     /culture_collection="DSM:6131"
                     /type_material="type strain of Haloarcula japonica"
                     /db_xref="taxon:1227453"
WGS         AOLY01000001-AOLY01000048
WGS_SCAFLD  NZ_AOLY01000001-NZ_AOLY01000048
//
LOCUS       NZ_AXZD01000000      3637498 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halalkalicoccus jeotgali B3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AXZD00000000
VERSION     NZ_AXZD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02440736
            Assembly: GCF_000485535.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Halalkalicoccus jeotgali B3
  ORGANISM  Halalkalicoccus jeotgali B3
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 3637498)
  AUTHORS   Eisen,J., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (25-SEP-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AXZD00000000.1.
            The Halalkalicoccus jeotgali B3 whole genome shotgun (WGS) project
            has the project accession NZ_AXZD00000000.  This version of the
            project (01) has the accession number NZ_AXZD01000000, and consists
            of sequences AXZD01000001-AXZD01000035.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 401056
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan  Eisen (jaeisen@ucdavis.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI
            Annotation by JGI
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            assembly            :: ALLPATHS v. R37654
            country             :: Korea
            investigation_type  :: bacteria_archaea
            isol_growth_condt   :: 17911300
            project_name        :: Halalkalicoccus jeotgali B3, DSM 18796
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 18796, CECT 7217, JCM 14584, KCTC 4019
            biotic_relationship :: Free living
            finishing_strategy  :: Level 1: Standard Draft
            GOLD Stamp ID       :: Gi04608
            Type Strain         :: Yes
            Funding Program     :: DOE-GEBA 2007
            Isolation Site      :: Salted shrimp jeotgal
            Motility            :: Nonmotile
            Temperature Range   :: Mesophile
            Salinity            :: Halophile
            Gram Staining       :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: ALLPATHS v. R37654
            Genome Coverage          :: Unknown
            Sequencing Technology    :: 454-GS-FLX-Titanium; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000485535.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:08:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,864
            CDSs (total)                      :: 3,810
            Genes (coding)                    :: 3,724
            CDSs (with protein)               :: 3,724
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 31 of 86
            Pseudo Genes (incomplete)         :: 58 of 86
            Pseudo Genes (internal stop)      :: 13 of 86
            Pseudo Genes (multiple problems)  :: 13 of 86
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637498
                     /organism="Halalkalicoccus jeotgali B3"
                     /mol_type="genomic DNA"
                     /strain="B3"
                     /culture_collection="DSM:18796"
                     /type_material="type strain of Halalkalicoccus jeotgali"
                     /db_xref="taxon:795797"
                     /geo_loc_name="Korea"
WGS         AXZD01000001-AXZD01000035
WGS_SCAFLD  NZ_AXZD01000001-NZ_AXZD01000035
//
LOCUS       NZ_AOLD01000000      3609529 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax sp. ATCC BAA-646, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLD00000000
VERSION     NZ_AOLD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471676
            Assembly: GCF_000336855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. ATCC BAA-646
  ORGANISM  Haloferax sp. ATCC BAA-646
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3609529)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3609529)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLD00000000.1.
            The Haloferax sp. ATCC BAA-646 whole genome shotgun (WGS) project
            has the project accession NZ_AOLD00000000.  This version of the
            project (01) has the accession number NZ_AOLD01000000, and consists
            of sequences AOLD01000001-AOLD01000048.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336855.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:50:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,694
            CDSs (total)                      :: 3,630
            Genes (coding)                    :: 3,568
            CDSs (with protein)               :: 3,568
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 33 of 62
            Pseudo Genes (incomplete)         :: 34 of 62
            Pseudo Genes (internal stop)      :: 2 of 62
            Pseudo Genes (multiple problems)  :: 6 of 62
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3609529
                     /organism="Haloferax sp. ATCC BAA-646"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-646"
                     /culture_collection="ATCC:BAA-646"
                     /db_xref="taxon:1227464"
WGS         AOLD01000001-AOLD01000048
WGS_SCAFLD  NZ_AOLD01000001-NZ_AOLD01000048
//
LOCUS       NZ_AOLQ01000000      3923205 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarcula vallismortis ATCC 29715, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLQ00000000
VERSION     NZ_AOLQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471656
            Assembly: GCF_000337775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula vallismortis ATCC 29715
  ORGANISM  Haloarcula vallismortis ATCC 29715
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3923205)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3923205)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLQ00000000.1.
            The Haloarcula vallismortis ATCC 29715 whole genome shotgun (WGS)
            project has the project accession NZ_AOLQ00000000.  This version of
            the project (01) has the accession number NZ_AOLQ01000000, and
            consists of sequences AOLQ01000001-AOLQ01000069.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Roche 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337775.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:52:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,087
            CDSs (total)                      :: 4,010
            Genes (coding)                    :: 3,970
            CDSs (with protein)               :: 3,970
            Genes (RNA)                       :: 77
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 18 of 40
            Pseudo Genes (incomplete)         :: 26 of 40
            Pseudo Genes (internal stop)      :: 9 of 40
            Pseudo Genes (multiple problems)  :: 10 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3923205
                     /organism="Haloarcula vallismortis ATCC 29715"
                     /mol_type="genomic DNA"
                     /strain="ATCC 29715"
                     /culture_collection="ATCC:29715"
                     /type_material="type strain of Halobacterium vallismortis"
                     /db_xref="taxon:662477"
WGS         AOLQ01000001-AOLQ01000069
WGS_SCAFLD  NZ_AOLQ01000001-NZ_AOLQ01000069
//
LOCUS       NZ_AQXI01000000      4317540 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haladaptatus paucihalophilus DX253, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AQXI00000000
VERSION     NZ_AQXI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02441396
            Assembly: GCF_000376445.1
KEYWORDS    WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Haladaptatus paucihalophilus DX253
  ORGANISM  Haladaptatus paucihalophilus DX253
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 4317540)
  AUTHORS   Anderson,I., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQXI00000000.1.
            The Haladaptatus paucihalophilus DX253 whole genome shotgun (WGS)
            project has the project accession NZ_AQXI00000000.  This version of
            the project (01) has the accession number NZ_AQXI01000000, and
            consists of sequences AQXI01000001-AQXI01000006.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 402799
            Source DNA and Organism available from Iain  Anderson
            (IJAnderson@lbl.gov)
            Source DNA available from Iain  Anderson (IJAnderson@lbl.gov)
            Organism available from Iain  Anderson (IJAnderson@lbl.gov)
            Contacts: Iain  Anderson (IJAnderson@lbl.gov)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Haladaptatus paucihalophilus DX253, DSM
                                   18195
            collection_date     :: Missing
            lat_lon             :: 34.996 -98.688
            depth               :: Missing
            alt_elev            :: Missing
            country             :: USA
            num_replicons       :: Missing
            ref_biomaterial     :: DSM 18195, JCM 13897
            biotic_relationship :: Missing
            rel_to_oxygen       :: Aerobe
            isol_growth_condt   :: 17220434
            assembly            :: Velvet v. 1.1.05; ALLPATHS v. r41554; Phrap
                                   v. 4.24
            finishing_strategy  :: Missing
            environment         :: Missing
            trophic_level       :: Chemoorganotroph
            sequencing_meth     :: WGS
            GOLD Stamp ID       :: Gi05740
            Type Strain         :: Yes
            Funding Program     :: DOE-CSP 2010
            Isolation Site      :: Low-salt, sulfide- and sulfur-rich spring
                                   (Zodletone Spring) in south-western
                                   Oklahoma, USA
            Cell Shape          :: Coccus-shaped
            Temperature Range   :: Mesophile
            Salinity            :: Halophile
            Gram Staining       :: Gram-
            Diseases            :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.05; ALLPATHS v. r41554;
                                        Phrap v. 4.24
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Unknown
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000376445.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:07:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,429
            CDSs (total)                      :: 4,371
            Genes (coding)                    :: 4,334
            CDSs (with protein)               :: 4,334
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 14 of 37
            Pseudo Genes (incomplete)         :: 24 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 7 of 37
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4317540
                     /organism="Haladaptatus paucihalophilus DX253"
                     /mol_type="genomic DNA"
                     /strain="DX253"
                     /type_material="type strain of Haladaptatus
                     paucihalophilus"
                     /db_xref="taxon:797209"
                     /geo_loc_name="USA"
                     /lat_lon="34.996 N 98.688 W"
WGS         AQXI01000001-AQXI01000006
WGS_SCAFLD  NZ_AQXI01000001-NZ_AQXI01000006
//
LOCUS       NZ_AOLN01000000      3368982 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax mucosum ATCC BAA-1512, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLN00000000
VERSION     NZ_AOLN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471642
            Assembly: GCF_000337815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax mucosum ATCC BAA-1512
  ORGANISM  Haloferax mucosum ATCC BAA-1512
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3368982)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3368982)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLN00000000.1.
            The Haloferax mucosum ATCC BAA-1512 whole genome shotgun (WGS)
            project has the project accession NZ_AOLN00000000.  This version of
            the project (01) has the accession number NZ_AOLN01000000, and
            consists of sequences AOLN01000001-AOLN01000020.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Roche 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337815.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:50:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,477
            CDSs (total)                      :: 3,417
            Genes (coding)                    :: 3,386
            CDSs (with protein)               :: 3,386
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 12 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 4 of 31
            Pseudo Genes (multiple problems)  :: 7 of 31
            CRISPR Arrays                     :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3368982
                     /organism="Haloferax mucosum ATCC BAA-1512"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-1512"
                     /culture_collection="ATCC:BAA-1512"
                     /type_material="type strain of Haloferax mucosum"
                     /db_xref="taxon:662479"
WGS         AOLN01000001-AOLN01000020
WGS_SCAFLD  NZ_AOLN01000001-NZ_AOLN01000020
//
LOCUS       NZ_BBJO01000000      3852219 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobellus rufus strain CBA1103, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBJO00000000
VERSION     NZ_BBJO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00018744
            Assembly: GCF_000739575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus rufus
  ORGANISM  Halobellus rufus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequences of Halobellus rufus CBA1103
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3852219)
  AUTHORS   Roh,S.W. and Nam,Y.-D.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2014) Contact:Seong Woon Roh Korea Basic Science
            Institute, Jeju Center; Cheomdan-ro 213-3, Jeju-si, Jeju-do
            690-140, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBJO00000000.1.
            The Halobellus rufus whole genome shotgun (WGS) project has the
            project accession NZ_BBJO00000000.  This version of the project
            (01) has the accession number NZ_BBJO01000000, and consists of
            sequences BBJO01000001-BBJO01000081.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC De novo assembly v. 6.5
            Genome Coverage       :: 216x
            Sequencing Technology :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000739575.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:26:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,945
            CDSs (total)                      :: 3,881
            Genes (coding)                    :: 3,669
            CDSs (with protein)               :: 3,669
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 212
            CDSs (without protein)            :: 212
            Pseudo Genes (ambiguous residues) :: 0 of 212
            Pseudo Genes (frameshifted)       :: 132 of 212
            Pseudo Genes (incomplete)         :: 92 of 212
            Pseudo Genes (internal stop)      :: 13 of 212
            Pseudo Genes (multiple problems)  :: 21 of 212
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3852219
                     /organism="Halobellus rufus"
                     /mol_type="genomic DNA"
                     /strain="CBA1103"
                     /type_material="type strain of Halobellus rufus"
                     /db_xref="taxon:1448860"
WGS         BBJO01000001-BBJO01000081
WGS_SCAFLD  NZ_BBJO01000001-NZ_BBJO01000081
//
LOCUS       NZ_CBMA010000000     3755243 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halopiger djelfimassiliensis strain IIH2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBMA000000000
VERSION     NZ_CBMA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2272053
            Assembly: GCF_000455365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopiger djelfimassiliensis
  ORGANISM  Halopiger djelfimassiliensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halopiger.
REFERENCE   1
  AUTHORS   Hassani,I. and Raoult,D.
  TITLE     Halopiger djelfamassiliensis genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3755243)
  AUTHORS   GENOMES,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2013) Fac de medecine, URMITE, 27 Bd J Moulin,
            13385 Marseille Cedex 05, FRANCE
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBMA000000000.1.
            The Halopiger djelfimassiliensis whole genome shotgun (WGS) project
            has the project accession NZ_CBMA000000000.  This version of the
            project (01) has the accession number NZ_CBMA010000000, and
            consists of sequences CBMA010000001-CBMA010000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000455365.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:13:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,790
            CDSs (total)                      :: 3,735
            Genes (coding)                    :: 3,655
            CDSs (with protein)               :: 3,655
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 30 of 80
            Pseudo Genes (incomplete)         :: 62 of 80
            Pseudo Genes (internal stop)      :: 3 of 80
            Pseudo Genes (multiple problems)  :: 14 of 80
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3755243
                     /organism="Halopiger djelfimassiliensis"
                     /mol_type="genomic DNA"
                     /strain="IIH2"
                     /type_material="type strain of Halopiger
                     djelfimassiliensis"
                     /db_xref="taxon:1293047"
WGS         CBMA010000001-CBMA010000055
WGS_SCAFLD  NZ_HG315684-NZ_HG315689
//
LOCUS       NZ_AOLW01000000      4225424 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarcula amylolytica JCM 13557, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOLW00000000
VERSION     NZ_AOLW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471637
            Assembly: GCF_000336615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula amylolytica JCM 13557
  ORGANISM  Haloarcula amylolytica JCM 13557
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4225424)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4225424)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOLW00000000.1.
            The Haloarcula amylolytica JCM 13557 whole genome shotgun (WGS)
            project has the project accession NZ_AOLW00000000.  This version of
            the project (01) has the accession number NZ_AOLW01000000, and
            consists of sequences AOLW01000001-AOLW01000081.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336615.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:47:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,330
            CDSs (total)                      :: 4,245
            Genes (coding)                    :: 4,129
            CDSs (with protein)               :: 4,129
            Genes (RNA)                       :: 85
            rRNAs                             :: 2, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 7, 7 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 44 of 116
            Pseudo Genes (incomplete)         :: 80 of 116
            Pseudo Genes (internal stop)      :: 22 of 116
            Pseudo Genes (multiple problems)  :: 25 of 116
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225424
                     /organism="Haloarcula amylolytica JCM 13557"
                     /mol_type="genomic DNA"
                     /strain="JCM 13557"
                     /culture_collection="JCM:13557"
                     /type_material="type strain of Haloarcula amylolytica"
                     /db_xref="taxon:1227452"
WGS         AOLW01000001-AOLW01000081
WGS_SCAFLD  NZ_AOLW01000001-NZ_AOLW01000081
//
LOCUS       NZ_AOME01000000      4199784 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halococcus salifodinae DSM 8989, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AOME00000000
VERSION     NZ_AOME00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471636
            Assembly: GCF_000336935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus salifodinae DSM 8989
  ORGANISM  Halococcus salifodinae DSM 8989
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 4199784)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4199784)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOME00000000.1.
            The Halococcus salifodinae DSM 8989 whole genome shotgun (WGS)
            project has the project accession NZ_AOME00000000.  This version of
            the project (01) has the accession number NZ_AOME01000000, and
            consists of sequences AOME01000001-AOME01000109.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000336935.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:52:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,195
            CDSs (total)                      :: 4,137
            Genes (coding)                    :: 3,950
            CDSs (with protein)               :: 3,950
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 187
            CDSs (without protein)            :: 187
            Pseudo Genes (ambiguous residues) :: 0 of 187
            Pseudo Genes (frameshifted)       :: 74 of 187
            Pseudo Genes (incomplete)         :: 127 of 187
            Pseudo Genes (internal stop)      :: 24 of 187
            Pseudo Genes (multiple problems)  :: 35 of 187
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4199784
                     /organism="Halococcus salifodinae DSM 8989"
                     /mol_type="genomic DNA"
                     /strain="DSM 8989"
                     /culture_collection="DSM:8989"
                     /type_material="type strain of Halococcus salifodinae"
                     /db_xref="taxon:1227456"
WGS         AOME01000001-AOME01000109
WGS_SCAFLD  NZ_AOME01000001-NZ_AOME01000109
//
LOCUS       NZ_ATDU01000000      2425881 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Ferroplasma sp. Type II, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ATDU00000000
VERSION     NZ_ATDU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02981542
            Assembly: GCF_000496155.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ferroplasma sp. Type II (mine drainage metagenome)
  ORGANISM  Ferroplasma sp. Type II
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma; environmental
            samples.
REFERENCE   1  (bases 1 to 2425881)
  AUTHORS   Yelton,A.P., Comolli,L.R., Justice,N.B., Castelle,C., Denef,V.J.,
            Thomas,B.C. and Banfield,J.F.
  TITLE     Comparative genomics in acid mine drainage biofilm communities
            reveals metabolic and structural differentiation of co-occurring
            archaea
  JOURNAL   BMC Genomics 14, 485 (2013)
   PUBMED   23865623
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425881)
  AUTHORS   Tyson,G.W., Hugenholtz,P., Allen,E.E., Banfield,J.F. and Denef,V.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2013) Environmental Science, Policy, and
            Management, University of California, Berkeley, ESPM, Banfield
            Laboratory, Berkeley, CA 94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ATDU00000000.1.
            The Ferroplasma sp. Type II whole genome shotgun (WGS) project has
            the project accession NZ_ATDU00000000.  This version of the project
            (01) has the accession number NZ_ATDU01000000, and consists of
            sequences ATDU01000001-ATDU01000358.
            Samples were collected from Iron Mountain Mine approximately yearly
            over a 12 year period and sequenced.  Resulting sequence data from
            previous samples was pooled and coassembled.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA_UD v. 1.1.0
            Assembly Name         :: fer2
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000496155.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:15:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,816
            CDSs (total)                      :: 2,746
            Genes (coding)                    :: 2,620
            CDSs (with protein)               :: 2,620
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 21 of 126
            Pseudo Genes (incomplete)         :: 109 of 126
            Pseudo Genes (internal stop)      :: 3 of 126
            Pseudo Genes (multiple problems)  :: 6 of 126
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425881
                     /organism="Ferroplasma sp. Type II"
                     /mol_type="genomic DNA"
                     /isolation_source="isolated from slime streamers and
                     attached to pyrite surfaces at a sulfide ore body"
                     /db_xref="taxon:261388"
                     /environmental_sample
                     /geo_loc_name="USA: Iron Mountain, CA"
                     /lat_lon="40.40 N 122.31 W"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         ATDU01000001-ATDU01000358
WGS_SCAFLD  NZ_KI542681-NZ_KI542857
//
LOCUS       NZ_BANO01000000      2431759 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halarchaeum acidiphilum MH1-52-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BANO00000000
VERSION     NZ_BANO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00036650
            Assembly: GCF_000400975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum acidiphilum MH1-52-1
  ORGANISM  Halarchaeum acidiphilum MH1-52-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1
  AUTHORS   Shimane,Y., Minegishi,H., Echigo,A., Nishi,S., Ohto,Y., Takaki,Y.,
            Shuto,A., Usami,R. and Hatada,Y.
  TITLE     Whole genome sequencing of Halarchaeum acidiphilum strain MH1-52-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2431759)
  AUTHORS   Shimane,Y., Minegishi,H., Echigo,A., Nishi,S., Ohta,Y., Takaki,Y.,
            Shuto,A., Usami,R. and Hatada,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2012) Contact:Shinro Nishi Japan Agency for
            Marine-Earth Science and Technology (JAMSTEC); Natsushima-Cho 2-15,
            Yokosuka, Kanagawa 237-0061, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BANO00000000.1.
            The Halarchaeum acidiphilum MH1-52-1 whole genome shotgun (WGS)
            project has the project accession NZ_BANO00000000.  This version of
            the project (01) has the accession number NZ_BANO01000000, and
            consists of sequences BANO01000001-BANO01000537.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench v.6.01
            Genome Coverage       :: 100x
            Sequencing Technology :: Ion torrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000400975.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:09:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,887
            CDSs (total)                      :: 2,842
            Genes (coding)                    :: 2,363
            CDSs (with protein)               :: 2,363
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 479
            CDSs (without protein)            :: 479
            Pseudo Genes (ambiguous residues) :: 0 of 479
            Pseudo Genes (frameshifted)       :: 202 of 479
            Pseudo Genes (incomplete)         :: 302 of 479
            Pseudo Genes (internal stop)      :: 16 of 479
            Pseudo Genes (multiple problems)  :: 38 of 479
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2431759
                     /organism="Halarchaeum acidiphilum MH1-52-1"
                     /mol_type="genomic DNA"
                     /strain="MH1-52-1"
                     /type_material="type strain of Halarchaeum acidiphilum"
                     /db_xref="taxon:1261545"
WGS         BANO01000001-BANO01000537
WGS_SCAFLD  NZ_BANO01000001-NZ_BANO01000537
//
LOCUS       NZ_BBJN01000000      2955001 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halolamina rubra strain CBA1107, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBJN00000000
VERSION     NZ_BBJN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00018743
            Assembly: GCF_000739555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina rubra
  ORGANISM  Halolamina rubra
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequences of Halolamina rubra CBA1107
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2955001)
  AUTHORS   Roh,S.W. and Nam,Y.-D.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2014) Contact:Seong Woon Roh Korea Basic Science
            Institute, Jeju Center; Cheomdan-ro 213-3, Jeju-si, Jeju-do
            690-140, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBJN00000000.1.
            The Halolamina rubra whole genome shotgun (WGS) project has the
            project accession NZ_BBJN00000000.  This version of the project
            (01) has the accession number NZ_BBJN01000000, and consists of
            sequences BBJN01000001-BBJN01000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC De novo assembly v. 6.5
            Genome Coverage       :: 257x
            Sequencing Technology :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000739555.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:48:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,155
            CDSs (total)                      :: 3,104
            Genes (coding)                    :: 2,947
            CDSs (with protein)               :: 2,947
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 157
            CDSs (without protein)            :: 157
            Pseudo Genes (ambiguous residues) :: 0 of 157
            Pseudo Genes (frameshifted)       :: 118 of 157
            Pseudo Genes (incomplete)         :: 44 of 157
            Pseudo Genes (internal stop)      :: 3 of 157
            Pseudo Genes (multiple problems)  :: 7 of 157
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955001
                     /organism="Halolamina rubra"
                     /mol_type="genomic DNA"
                     /strain="CBA1107"
                     /type_material="type strain of Halolamina rubra"
                     /db_xref="taxon:1380430"
WGS         BBJN01000001-BBJN01000071
WGS_SCAFLD  NZ_BBJN01000001-NZ_BBJN01000071
//
LOCUS       NZ_AQZY01000000      3605871 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halomicrobium katesii DSM 19301, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AQZY00000000
VERSION     NZ_AQZY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02261322
            Assembly: GCF_000379085.1
KEYWORDS    WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Halomicrobium katesii DSM 19301
  ORGANISM  Halomicrobium katesii DSM 19301
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halomicrobium.
REFERENCE   1  (bases 1 to 3605871)
  AUTHORS   Eisen,J., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQZY00000000.1.
            The Halomicrobium katesii DSM 19301 whole genome shotgun (WGS)
            project has the project accession NZ_AQZY00000000.  This version of
            the project (01) has the accession number NZ_AQZY01000000, and
            consists of sequences AQZY01000001-AQZY01000021.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 404292
            Source DNA and organism available from Hans-Peter Klenk at the
            German Collection of Microorganisms and Cell Cultures (DSMZ)
            (hans-peter.klenk@dsmz.de)
            Contacts: Jonathan  Eisen (jaeisen@ucdavis.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-PGF and JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            investigation_type       :: bacteria_archaea
            project_name             :: Halomicrobium katesii DSM 19301
            collection_date          :: Missing
            lat_lon                  :: -27.566 -70.050
            depth                    :: Missing
            alt_elev                 :: Missing
            country                  :: Chile
            num_replicons            :: Missing
            ref_biomaterial          :: DSM 19301
            biotic_relationship      :: Missing
            rel_to_oxygen            :: Missing
            isol_growth_condt        :: Missing
            assembly                 :: Velvet v. 1.1.05; ALLPATHS v. 39750;
                                        Phrap v. 4.24
            finishing_strategy       :: Missing
            environment              :: Fresh water; Aquatic
            trophic_level            :: Missing
            sequencing_meth          :: WGS
            GOLD Stamp ID            :: Gi13992
            Current Finishing Status :: Level 3: Improved-High-Quality Draft
            Type Strain              :: Yes
            Funding Program          :: DOE-CSP 2011
            Isolation Site           :: Lake Tebenquiche, Atacama saltern,
                                        Chile
            Gram Staining            :: Gram-
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.05; ALLPATHS v. 39750;
                                        Phrap v. 4.24
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Unknown
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000379085.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:05:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,729
            CDSs (total)                      :: 3,669
            Genes (coding)                    :: 3,538
            CDSs (with protein)               :: 3,538
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 54 of 131
            Pseudo Genes (incomplete)         :: 98 of 131
            Pseudo Genes (internal stop)      :: 22 of 131
            Pseudo Genes (multiple problems)  :: 37 of 131
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3605871
                     /organism="Halomicrobium katesii DSM 19301"
                     /mol_type="genomic DNA"
                     /strain="DSM 19301"
                     /isolation_source="Lake Tebenquiche, Atacama saltern,
                     Chile"
                     /culture_collection="DSM:19301"
                     /type_material="type strain of Halomicrobium katesii"
                     /db_xref="taxon:1069082"
                     /geo_loc_name="Chile"
                     /lat_lon="27.566 S 70.050 W"
WGS         AQZY01000001-AQZY01000021
WGS_SCAFLD  NZ_KB905378-NZ_KB905379
//
LOCUS       NZ_CBMB010000000     3906156 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halopiger goleimassiliensis strain IIH3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBMB000000000
VERSION     NZ_CBMB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2272090
            Assembly: GCF_000455345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopiger goleimassiliensis
  ORGANISM  Halopiger goleimassiliensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halopiger.
REFERENCE   1
  AUTHORS   Hassani,I. and Raoult,D.
  TITLE     Halopiger goleamassiliensis genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3906156)
  AUTHORS   GENOMES,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2013) Fac de medecine, URMITE, 27 Bd J Moulin,
            13385 Marseille Cedex 05, FRANCE
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBMB000000000.1.
            The Halopiger goleimassiliensis whole genome shotgun (WGS) project
            has the project accession NZ_CBMB000000000.  This version of the
            project (01) has the accession number NZ_CBMB010000000, and
            consists of sequences CBMB010000001-CBMB010000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000455345.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:09:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,887
            CDSs (total)                      :: 3,832
            Genes (coding)                    :: 3,802
            CDSs (with protein)               :: 3,802
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 10 of 30
            Pseudo Genes (incomplete)         :: 20 of 30
            Pseudo Genes (internal stop)      :: 3 of 30
            Pseudo Genes (multiple problems)  :: 3 of 30
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906156
                     /organism="Halopiger goleimassiliensis"
                     /mol_type="genomic DNA"
                     /strain="IIH3"
                     /type_material="type strain of Halopiger
                     goleimassiliensis"
                     /db_xref="taxon:1293048"
WGS         CBMB010000001-CBMB010000011
WGS_SCAFLD  NZ_HG315690-NZ_HG315692
//
LOCUS       NZ_AOHU01000000      3866754 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax volcanii DS2, whole genome shotgun sequencing project.
ACCESSION   NZ_AOHU00000000
VERSION     NZ_AOHU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471619
            Assembly: GCF_000337315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii DS2
  ORGANISM  Haloferax volcanii DS2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3866754)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3866754)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOHU00000000.1.
            The Haloferax volcanii DS2 whole genome shotgun (WGS) project has
            the project accession NZ_AOHU00000000.  This version of the project
            (01) has the accession number NZ_AOHU01000000, and consists of
            sequences AOHU01000001-AOHU01000119.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            Reference guided assembly based on Haloferax volcanii DS2 assembly
            ASM2568v1.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337315.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 20:49:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,984
            CDSs (total)                      :: 3,925
            Genes (coding)                    :: 3,761
            CDSs (with protein)               :: 3,761
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 164
            CDSs (without protein)            :: 164
            Pseudo Genes (ambiguous residues) :: 0 of 164
            Pseudo Genes (frameshifted)       :: 60 of 164
            Pseudo Genes (incomplete)         :: 106 of 164
            Pseudo Genes (internal stop)      :: 22 of 164
            Pseudo Genes (multiple problems)  :: 21 of 164
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3866754
                     /organism="Haloferax volcanii DS2"
                     /mol_type="genomic DNA"
                     /strain="DS2"
                     /culture_collection="DSM:3757"
                     /type_material="type strain of Halobacterium volcanii"
                     /db_xref="taxon:309800"
WGS         AOHU01000001-AOHU01000119
WGS_SCAFLD  NZ_AOHU01000001-NZ_AOHU01000119
//
LOCUS       NZ_CCDK010000000     3893567 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax prahovense strain Arc-Hr, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CCDK000000000
VERSION     NZ_CCDK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3139050
            Assembly: GCF_000723845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax prahovense
  ORGANISM  Haloferax prahovense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3893567)
  AUTHORS   Khelaifia,S., Croce,O., Lagier,J.C. and Raoult,D.
  TITLE     Draft genome sequence of Haloferax alexandrinus Arc-Hr
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3893567)
  AUTHORS   Urmite,Genomes.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2014) URMITE, 27 Bd J Moulin, 13385 Marseille
            Cedex 05, FRANCE
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CCDK000000000.1.
            The Haloferax prahovense whole genome shotgun (WGS) project has the
            project accession NZ_CCDK000000000.  This version of the project
            (01) has the accession number NZ_CCDK010000000, and consists of
            sequences CCDK010000001-CCDK010000010.
            The organism was changed from 'Haloferax alexandrinus' to
            'Haloferax prahovense' in July  2020.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_000723845.1
            Current Name        :: Haloferax prahovense
            Previous Name       :: Haloferax alexandrinus
            Date Updated        :: 2020-07-30
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_000336815.1
            A1 Name             :: Haloferax prahovense
            A1 ANI              :: 99.48%
            A1 Query Coverage   :: 92.25%
            A1 Subject Coverage :: 89.82%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000336735.1
            A2 Name             :: Haloferax alexandrinus
            A2 ANI              :: 92.38%
            A2 Query Coverage   :: 76.03%
            A2 Subject Coverage :: 81.12%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000723845.1-RS_2024_10_21
            Annotation Date                   :: 10/21/2024 21:26:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,920
            CDSs (total)                      :: 3,854
            Genes (coding)                    :: 3,823
            CDSs (with protein)               :: 3,823
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 3, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 10 of 31
            Pseudo Genes (incomplete)         :: 22 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 6 of 31
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893567
                     /organism="Haloferax prahovense"
                     /mol_type="genomic DNA"
                     /strain="Arc-Hr"
                     /db_xref="taxon:381852"
WGS         CCDK010000001-CCDK010000010
WGS_SCAFLD  NZ_LK053000-NZ_LK053004
//
LOCUS       NZ_JXCG01000000      1819157 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Thermococcus sp. EP1, whole genome shotgun sequencing project.
ACCESSION   NZ_JXCG00000000
VERSION     NZ_JXCG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03274361
            Assembly: GCF_001317345.1
KEYWORDS    WGS; RefSeq; GSC:MIxS:MIGS:4.0.
SOURCE      Thermococcus sp. EP1
  ORGANISM  Thermococcus sp. EP1
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1819157)
  AUTHORS   Zhou,M., Liu,Q., Xie,Y., Dong,B. and Chen,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2015) Key Laboratory of Marine Biogenetic
            Resources, Third Institute of Oceanography, State Oceanic
            Administration, 184 Daxue Road, Xiamen, Fujian 361005, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JXCG00000000.1.
            The Thermococcus sp. EP1 whole genome shotgun (WGS) project has the
            project accession NZ_JXCG00000000.  This version of the project
            (01) has the accession number NZ_JXCG01000000, and consists of
            sequences JXCG01000001-JXCG01000043.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##MIGS:4.0-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: EP1
            collected_by        :: Qing Liu
            collection_date     :: 04.2013
            lat_lon             :: 3.10 S 102.55 W
            depth               :: 2906m
            alt_elev            :: NA
            geo_loc_name        :: Pacific Ocean: East Pacific Rise
            environment         :: sediment
            ref_biomaterial     :: NA
            biotic_relationship :: free-living
            trophic_level       :: heterotroph
            rel_to_oxygen       :: anaerobe
            isol_growth_condt   :: NA
            seq_meth            :: Illumina MiSeq
            num_replicons       :: NA
            assembly            :: SOAPdenovo v2.0
            finishing_strategy  :: Draft; 144x; 43
            annot_source        :: GenBank
            estimated_size      :: 1,819,157 bp
            env_biome           :: ENVO:01000048
            env_feature         :: ENVO:01000122
            env_material        :: ENVO:00002113
            sample-material     :: NA
            source_mat_id       :: NA
            temp                :: NA
            salinity            :: NA
            created with        :: NA
            encoded_traits      :: NA
            Diseases            :: NA
            Type Strain         :: NA
            Temperature Optimum :: 80 C
            Temperature Range   :: 48 - 90 C
            Sporulation         :: no
            Gram Staining       :: negative
            Motility            :: NA
            samp_store_temp     :: 4 C
            sediment_type       :: basalt
            env_package         :: sediment
            ##MIGS:4.0-Data-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 144.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001317345.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 04:38:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,014
            CDSs (total)                      :: 1,965
            Genes (coding)                    :: 1,933
            CDSs (with protein)               :: 1,933
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 6 of 32
            Pseudo Genes (incomplete)         :: 28 of 32
            Pseudo Genes (internal stop)      :: 1 of 32
            Pseudo Genes (multiple problems)  :: 3 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819157
                     /organism="Thermococcus sp. EP1"
                     /mol_type="genomic DNA"
                     /strain="EP1"
                     /isolation_source="deep-sea hydrothermal vent sediment
                     sample"
                     /db_xref="taxon:1591054"
                     /geo_loc_name="Pacific Ocean: East Pacific Rise"
                     /lat_lon="3.10 S 102.55 W"
                     /collection_date="2013-04"
WGS         JXCG01000001-JXCG01000043
WGS_SCAFLD  NZ_JXCG01000001-NZ_JXCG01000043
//
LOCUS       NZ_LIUF01000000      3970989 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarcula rubripromontorii strain SL3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LIUF00000000
VERSION     NZ_LIUF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04007144
            Assembly: GCF_001280425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula rubripromontorii
  ORGANISM  Haloarcula rubripromontorii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3970989)
  AUTHORS   Sanchez-Nieves,R.L. and Montalvo-Rodriguez,R.
  TITLE     Genomes of Isolates from Cabo Rojo, PR
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3970989)
  AUTHORS   Sanchez-Nieves,R.L. and Montalvo-Rodriguez,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2015) Biology, UPR- Mayaguez, Post, Mayaguez
            00681, Puerto Rico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LIUF00000000.1.
            The Haloarcula rubripromontorii whole genome shotgun (WGS) project
            has the project accession NZ_LIUF00000000.  This version of the
            project (01) has the accession number NZ_LIUF01000000, and consists
            of sequences LIUF01000001-LIUF01000018.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: NGEN Assembler v. June-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001280425.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 02:43:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,066
            CDSs (total)                      :: 4,007
            Genes (coding)                    :: 3,942
            CDSs (with protein)               :: 3,942
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 26 of 65
            Pseudo Genes (incomplete)         :: 50 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 20 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3970989
                     /organism="Haloarcula rubripromontorii"
                     /mol_type="genomic DNA"
                     /strain="SL3"
                     /isolation_source="environmental"
                     /type_material="type strain of Haloarcula
                     rubripromontorii"
                     /db_xref="taxon:1705562"
                     /geo_loc_name="Puerto Rico: Cabo Rojo"
                     /collection_date="2015-08"
                     /collected_by="Ruben Sanchez"
                     /identified_by="Rafael Montalvo"
WGS         LIUF01000001-LIUF01000018
WGS_SCAFLD  NZ_LIUF01000001-NZ_LIUF01000018
//
LOCUS       NZ_CVUA01000000      2835858 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halolamina sediminis strain halo7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CVUA00000000
VERSION     NZ_CVUA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3451356
            Assembly: GCF_001282785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina sediminis
  ORGANISM  Halolamina sediminis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1
  AUTHORS   Park,Soo.-Je.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2015) JEJU NATIONAL UNIVERSITY, Lab of Microbial
            Ecology and Genomics, Dept. of Biology, Jeju National University,
            102 Jejudaehak-ro, Jeju 690-756, Jeju, 690-756, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CVUA00000000.1.
            The Halolamina sediminis whole genome shotgun (WGS) project has the
            project accession NZ_CVUA00000000.  This version of the project
            (01) has the accession number NZ_CVUA01000000, and consists of
            sequence CVUA01000001.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001282785.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 02:43:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,952
            CDSs (total)                      :: 2,898
            Genes (coding)                    :: 2,854
            CDSs (with protein)               :: 2,854
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 15 of 44
            Pseudo Genes (incomplete)         :: 33 of 44
            Pseudo Genes (internal stop)      :: 9 of 44
            Pseudo Genes (multiple problems)  :: 11 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2835858
                     /organism="Halolamina sediminis"
                     /mol_type="genomic DNA"
                     /strain="halo7"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halolamina sediminis"
                     /db_xref="taxon:1480675"
                     /geo_loc_name="South Korea:Gomso solar saltern"
                     /collection_date="2012"
WGS         CVUA01000001
WGS_SCAFLD  NZ_CVUA01000001
//
LOCUS       NZ_BBBE01000000      1909446 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Thermococcus peptonophilus OG-1 = JCM 9653, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBBE00000000
VERSION     NZ_BBBE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000482
            Sequence Read Archive: DRR017684
            Assembly: GCF_001315905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus peptonophilus OG-1 = JCM 9653
  ORGANISM  Thermococcus peptonophilus OG-1 = JCM 9653
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1909446)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBE00000000.1.
            The Thermococcus peptonophilus OG-1 = JCM 9653 whole genome shotgun
            (WGS) project has the project accession NZ_BBBE00000000.  This
            version of the project (01) has the accession number
            NZ_BBBE01000000, and consists of sequences
            BBBE01000001-BBBE01000041.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 49x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001315905.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 04:38:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,611
            CDSs (total)                      :: 2,561
            Genes (coding)                    :: 1,716
            CDSs (with protein)               :: 1,716
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 845
            CDSs (without protein)            :: 845
            Pseudo Genes (ambiguous residues) :: 0 of 845
            Pseudo Genes (frameshifted)       :: 776 of 845
            Pseudo Genes (incomplete)         :: 99 of 845
            Pseudo Genes (internal stop)      :: 12 of 845
            Pseudo Genes (multiple problems)  :: 41 of 845
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909446
                     /organism="Thermococcus peptonophilus OG-1 = JCM 9653"
                     /mol_type="genomic DNA"
                     /strain="JCM 9653"
                     /culture_collection="JCM:9653"
                     /type_material="type strain of Thermococcus peptonophilus"
                     /db_xref="taxon:523851"
WGS         BBBE01000001-BBBE01000041
WGS_SCAFLD  NZ_BBBE01000001-NZ_BBBE01000041
//
LOCUS       NZ_BBCU01000000      2113420 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Thermococcus sp. JCM 11816, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBCU00000000
VERSION     NZ_BBCU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000516
            Sequence Read Archive: DRR017728
            Assembly: GCF_001316165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. JCM 11816
  ORGANISM  Thermococcus sp. JCM 11816
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2113420)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBCU00000000.1.
            The Thermococcus sp. JCM 11816 whole genome shotgun (WGS) project
            has the project accession NZ_BBCU00000000.  This version of the
            project (01) has the accession number NZ_BBCU01000000, and consists
            of sequences BBCU01000001-BBCU01000024.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 42x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316165.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 04:42:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,985
            CDSs (total)                      :: 2,935
            Genes (coding)                    :: 2,009
            CDSs (with protein)               :: 2,009
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 926
            CDSs (without protein)            :: 926
            Pseudo Genes (ambiguous residues) :: 0 of 926
            Pseudo Genes (frameshifted)       :: 842 of 926
            Pseudo Genes (incomplete)         :: 113 of 926
            Pseudo Genes (internal stop)      :: 18 of 926
            Pseudo Genes (multiple problems)  :: 47 of 926
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113420
                     /organism="Thermococcus sp. JCM 11816"
                     /mol_type="genomic DNA"
                     /strain="JCM 11816"
                     /culture_collection="JCM:11816"
                     /db_xref="taxon:1295125"
WGS         BBCU01000001-BBCU01000024
WGS_SCAFLD  NZ_BBCU01000001-NZ_BBCU01000024
//
LOCUS       NZ_BBET01000000      2331485 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 strain JCM
            13429, whole genome shotgun sequencing project.
ACCESSION   NZ_BBET00000000
VERSION     NZ_BBET00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00016809
            Sequence Read Archive: DRR017791
            Assembly: GCF_001316345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter arboriphilus JCM 13429 = DSM 1125
  ORGANISM  Methanobrevibacter arboriphilus JCM 13429 = DSM 1125
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2331485)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBET00000000.1.
            The Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 whole
            genome shotgun (WGS) project has the project accession
            NZ_BBET00000000.  This version of the project (01) has the
            accession number NZ_BBET01000000, and consists of sequences
            BBET01000001-BBET01000431.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 37x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316345.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 04:38:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,125
            CDSs (total)                      :: 3,083
            Genes (coding)                    :: 2,429
            CDSs (with protein)               :: 2,429
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 654
            CDSs (without protein)            :: 654
            Pseudo Genes (ambiguous residues) :: 0 of 654
            Pseudo Genes (frameshifted)       :: 562 of 654
            Pseudo Genes (incomplete)         :: 86 of 654
            Pseudo Genes (internal stop)      :: 31 of 654
            Pseudo Genes (multiple problems)  :: 25 of 654
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331485
                     /organism="Methanobrevibacter arboriphilus JCM 13429 = DSM
                     1125"
                     /mol_type="genomic DNA"
                     /strain="JCM 13429"
                     /culture_collection="JCM:13429"
                     /type_material="type strain of Methanobacterium
                     arbophilicum"
                     /db_xref="taxon:1300164"
WGS         BBET01000001-BBET01000431
WGS_SCAFLD  NZ_BBET01000001-NZ_BBET01000431
//
LOCUS       NZ_BBEF01000000      4458961 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina barkeri JCM 10043, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBEF00000000
VERSION     NZ_BBEF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00016803
            Sequence Read Archive: DRR017773
            Assembly: GCF_001316305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina barkeri JCM 10043
  ORGANISM  Methanosarcina barkeri JCM 10043
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4458961)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBEF00000000.1.
            The Methanosarcina barkeri JCM 10043 whole genome shotgun (WGS)
            project has the project accession NZ_BBEF00000000.  This version of
            the project (01) has the accession number NZ_BBEF01000000, and
            consists of sequences BBEF01000001-BBEF01000243.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 25x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316305.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 04:44:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,064
            CDSs (total)                      :: 5,008
            Genes (coding)                    :: 4,107
            CDSs (with protein)               :: 4,107
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 901
            CDSs (without protein)            :: 901
            Pseudo Genes (ambiguous residues) :: 0 of 901
            Pseudo Genes (frameshifted)       :: 728 of 901
            Pseudo Genes (incomplete)         :: 233 of 901
            Pseudo Genes (internal stop)      :: 61 of 901
            Pseudo Genes (multiple problems)  :: 104 of 901
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4458961
                     /organism="Methanosarcina barkeri JCM 10043"
                     /mol_type="genomic DNA"
                     /strain="JCM 10043"
                     /culture_collection="JCM:10043"
                     /type_material="type strain of Methanosarcina barkeri"
                     /db_xref="taxon:1298606"
WGS         BBEF01000001-BBEF01000243
WGS_SCAFLD  NZ_BBEF01000001-NZ_BBEF01000243
//
LOCUS       NZ_LJCQ01000000      1746790 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Acidiplasma aeolicum strain V, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LJCQ00000000
VERSION     NZ_LJCQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03274863
            Assembly: GCF_001399695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidiplasma aeolicum
  ORGANISM  Acidiplasma aeolicum
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1746790)
  AUTHORS   Hemp,J.
  TITLE     Draft genome sequence of Acidiplasma aeolicum DSM 18409
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1746790)
  AUTHORS   Hemp,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2015) Division of Geological and Planetary
            Sciences, California Institute of Technology, 1200 E California
            Blvd, Pasadena, CA 91125, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LJCQ00000000.1.
            The Acidiplasma aeolicum whole genome shotgun (WGS) project has the
            project accession NZ_LJCQ00000000.  This version of the project
            (01) has the accession number NZ_LJCQ01000000, and consists of
            sequences LJCQ01000001-LJCQ01000483.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.1.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 25.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001399695.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:41:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,910
            CDSs (total)                      :: 1,862
            Genes (coding)                    :: 1,815
            CDSs (with protein)               :: 1,815
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 5 of 47
            Pseudo Genes (incomplete)         :: 44 of 47
            Pseudo Genes (internal stop)      :: 3 of 47
            Pseudo Genes (multiple problems)  :: 4 of 47
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746790
                     /organism="Acidiplasma aeolicum"
                     /mol_type="genomic DNA"
                     /strain="V"
                     /isolation_source="Hydrothermal pool"
                     /culture_collection="DSM:18409"
                     /type_material="type strain of Acidiplasma aeolicum"
                     /db_xref="taxon:507754"
                     /geo_loc_name="Italy: Vulcano Island"
WGS         LJCQ01000001-LJCQ01000483
WGS_SCAFLD  NZ_LJCQ01000001-NZ_LJCQ01000483
//
LOCUS       NZ_LKBH01000000      1731076 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Acidiplasma cupricumulans strain BH2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LKBH00000000
VERSION     NZ_LKBH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04087217
            Assembly: GCF_001402935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidiplasma cupricumulans
  ORGANISM  Acidiplasma cupricumulans
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1731076)
  AUTHORS   Bulaev,A.G. and Kanygina,A.V.
  TITLE     Heavy metals and arsenic resistance mechanisms in polyextremophilic
            archaea of the family Ferroplasmaceae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1731076)
  AUTHORS   Bulaev,A.G. and Kanygina,A.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2015) Bioinformatics, RIPCM, 1a Malaya
            Pirogovskaya, Moscow 119435, Russian Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LKBH00000000.1.
            The Acidiplasma cupricumulans whole genome shotgun (WGS) project
            has the project accession NZ_LKBH00000000.  This version of the
            project (01) has the accession number NZ_LKBH01000000, and consists
            of sequences LKBH01000001-LKBH01000312.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: SPAdes v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001402935.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:31:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,845
            CDSs (total)                      :: 1,795
            Genes (coding)                    :: 1,767
            CDSs (with protein)               :: 1,767
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 8 of 28
            Pseudo Genes (incomplete)         :: 24 of 28
            Pseudo Genes (internal stop)      :: 3 of 28
            Pseudo Genes (multiple problems)  :: 6 of 28
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731076
                     /organism="Acidiplasma cupricumulans"
                     /mol_type="genomic DNA"
                     /strain="BH2"
                     /isolation_source="mineral sulfide ore"
                     /type_material="type strain of Ferroplasma cupricumulans"
                     /db_xref="taxon:312540"
                     /geo_loc_name="Myanmar"
                     /collection_date="2006"
WGS         LKBH01000001-LKBH01000312
WGS_SCAFLD  NZ_LKBH01000001-NZ_LKBH01000312
//
LOCUS       NZ_LOPS01000000      1723106 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Candidatus Methanomethylophilus sp. 1R26, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LOPS00000000
VERSION     NZ_LOPS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04326629
            Assembly: GCF_001481295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomethylophilus sp. 1R26
  ORGANISM  Candidatus Methanomethylophilus sp. 1R26
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1723106)
  AUTHORS   Noel,S.J., Hojberg,O., Urich,T. and Poulsen,M.
  TITLE     Draft Genome Sequence of 'Candidatus Methanomethylophilus' sp.
            1R26, Enriched from Bovine Rumen, a Methanogenic Archaeon Belonging
            to the Methanomassiliicoccales Order
  JOURNAL   Genome Announc 4 (1), e01734-15 (2016)
   PUBMED   26893425
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723106)
  AUTHORS   Noel,S.J. and Poulsen,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2015) Animal Science, Aarhus University, Blichers
            Alle 20, Tjele, Midjutland 8830, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LOPS00000000.1.
            The Candidatus Methanomethylophilus sp. 1R26 whole genome shotgun
            (WGS) project has the project accession NZ_LOPS00000000.  This
            version of the project (01) has the accession number
            NZ_LOPS01000000, and consists of sequences
            LOPS01000001-LOPS01000050.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: SPAdes v. 3.6.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001481295.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:50:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,047
            CDSs (total)                      :: 1,994
            Genes (coding)                    :: 1,782
            CDSs (with protein)               :: 1,782
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 212
            CDSs (without protein)            :: 212
            Pseudo Genes (ambiguous residues) :: 0 of 212
            Pseudo Genes (frameshifted)       :: 118 of 212
            Pseudo Genes (incomplete)         :: 98 of 212
            Pseudo Genes (internal stop)      :: 13 of 212
            Pseudo Genes (multiple problems)  :: 17 of 212
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723106
                     /organism="Candidatus Methanomethylophilus sp. 1R26"
                     /mol_type="genomic DNA"
                     /strain="1R26"
                     /isolation_source="enrichment culture inoculated with
                     rumen contents from Bos taurus grown on RM02 media
                     supplemented with sodium acetate, sodium formate,
                     trimethylamine, methanol and yeast extract."
                     /db_xref="taxon:1769296"
                     /geo_loc_name="Denmark"
                     /lat_lon="56.4877773 N 9.58802000 E"
                     /collection_date="2014-04-04"
WGS         LOPS01000001-LOPS01000050
WGS_SCAFLD  NZ_LOPS01000001-NZ_LOPS01000050
//
LOCUS       NZ_LIXN01000000      2052483 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Thermococcus thioreducens strain DSM 14981, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LIXN00000000
VERSION     NZ_LIXN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04011897
            Assembly: GCF_001418715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus thioreducens
  ORGANISM  Thermococcus thioreducens
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2052483)
  AUTHORS   Hong,S.-J., Kim,M.-C. and Shin,J.-H.
  TITLE     Thermococcus thioreducens DSM 14981 genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2052483)
  AUTHORS   Hong,S.-J., Kim,M.-C. and Shin,J.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2015) School of Applied Biosciences, College of
            Agriculture and Life Sciences, Kyungpook National University, 80
            Daehakro, Bukgu, Daegu 41566, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LIXN00000000.1.
            The Thermococcus thioreducens whole genome shotgun (WGS) project
            has the project accession NZ_LIXN00000000.  This version of the
            project (01) has the accession number NZ_LIXN01000000, and consists
            of sequences LIXN01000001-LIXN01000041.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Mira v. 4.0; CLC genomics v. 7.5
            Genome Coverage       :: 91x
            Sequencing Technology :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001418715.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:18:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,393
            CDSs (total)                      :: 2,348
            Genes (coding)                    :: 2,224
            CDSs (with protein)               :: 2,224
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 101 of 124
            Pseudo Genes (incomplete)         :: 26 of 124
            Pseudo Genes (internal stop)      :: 4 of 124
            Pseudo Genes (multiple problems)  :: 7 of 124
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052483
                     /organism="Thermococcus thioreducens"
                     /mol_type="genomic DNA"
                     /strain="DSM 14981"
                     /isolation_source="deep-sea"
                     /culture_collection="DSM:14981"
                     /type_material="type strain of Thermococcus thioreducens"
                     /db_xref="taxon:277988"
                     /geo_loc_name="USA"
                     /collection_date="1999-10"
WGS         LIXN01000001-LIXN01000041
WGS_SCAFLD  NZ_LIXN01000001-NZ_LIXN01000041
//
LOCUS       NZ_LLYW01000000      2337139 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Thermococcus celericrescens strain DSM 17994, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LLYW00000000
VERSION     NZ_LLYW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04166689
            Assembly: GCF_001484195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus celericrescens
  ORGANISM  Thermococcus celericrescens
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2337139)
  AUTHORS   Hong,S.-J., Park,C.-E. and Shin,J.-H.
  TITLE     Draft genome sequence of Thermococcus celericrescens strain DSM
            17994
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2337139)
  AUTHORS   Hong,S.-J., Park,C.-E. and Shin,J.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2015) School of Applied Biosciences, College of
            Agriculture and Life Sciences, 80 Daehakro, Bukgu, Daegu 41566,
            South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LLYW00000000.1.
            The Thermococcus celericrescens whole genome shotgun (WGS) project
            has the project accession NZ_LLYW00000000.  This version of the
            project (01) has the accession number NZ_LLYW01000000, and consists
            of sequences LLYW01000001-LLYW01000073.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Mira v. 3.4.1
            Genome Coverage       :: 98x
            Sequencing Technology :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001484195.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:24:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,667
            CDSs (total)                      :: 2,619
            Genes (coding)                    :: 2,503
            CDSs (with protein)               :: 2,503
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 63 of 116
            Pseudo Genes (incomplete)         :: 62 of 116
            Pseudo Genes (internal stop)      :: 8 of 116
            Pseudo Genes (multiple problems)  :: 14 of 116
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337139
                     /organism="Thermococcus celericrescens"
                     /mol_type="genomic DNA"
                     /strain="DSM 17994"
                     /isolation_source="hydrothermal vent"
                     /culture_collection="DSM:17994"
                     /type_material="type strain of Thermococcus
                     celericrescens"
                     /db_xref="taxon:227598"
                     /geo_loc_name="Japan"
                     /collection_date="2001-09"
WGS         LLYW01000001-LLYW01000073
WGS_SCAFLD  NZ_LLYW01000001-NZ_LLYW01000073
//
LOCUS       NZ_LGUC01000000      2972542 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halolamina pelagica strain CDK2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LGUC00000000
VERSION     NZ_LGUC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03287580
            Assembly: GCF_001307315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina pelagica
  ORGANISM  Halolamina pelagica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2972542)
  AUTHORS   Kaushik,R., Gaba,S., Singh,R.N., Abrol,S., Yadav,A.N. and
            Saxena,A.K.
  TITLE     Genome sequence of extreme halophilic archaea of Halolamina
            pelagica CDK2 isolated from Rann of Kutch, India
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2972542)
  AUTHORS   Kaushik,R., Gaba,S., Singh,R.N., Abrol,S., Yadav,A.N. and
            Saxena,A.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2015) Microbiology, Indian Institute of
            Agricultural Research, Pusa Road, Delhi, Delhi 110012, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LGUC00000000.1.
            The Halolamina pelagica whole genome shotgun (WGS) project has the
            project accession NZ_LGUC00000000.  This version of the project
            (01) has the accession number NZ_LGUC01000000, and consists of
            sequences LGUC01000001-LGUC01000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Celera Assembler v. 8.3
            Assembly Name         :: Halpeg_cdk2_1
            Genome Coverage       :: 100.0x
            Sequencing Technology :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001307315.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 04:58:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,331
            CDSs (total)                      :: 3,278
            Genes (coding)                    :: 2,734
            CDSs (with protein)               :: 2,734
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 544
            CDSs (without protein)            :: 544
            Pseudo Genes (ambiguous residues) :: 0 of 544
            Pseudo Genes (frameshifted)       :: 470 of 544
            Pseudo Genes (incomplete)         :: 93 of 544
            Pseudo Genes (internal stop)      :: 3 of 544
            Pseudo Genes (multiple problems)  :: 22 of 544
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2972542
                     /organism="Halolamina pelagica"
                     /mol_type="genomic DNA"
                     /strain="CDK2"
                     /isolation_source="Natural Saltern"
                     /db_xref="taxon:699431"
                     /geo_loc_name="India: Gujrat"
                     /lat_lon="23.49 N 69.31 E"
                     /altitude="1 m"
                     /collection_date="2012-06-06"
                     /collected_by="Dr. Rajeev Kaushik"
                     /identified_by="Dr. Rajeev Kaushik"
WGS         LGUC01000001-LGUC01000003
WGS_SCAFLD  NZ_LGUC01000001-NZ_LGUC01000003
//
LOCUS       NZ_BBBD01000000      2279829 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter arboriphilus JCM 9315, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBBD00000000
VERSION     NZ_BBBD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000480
            Sequence Read Archive: DRR017683
            Assembly: GCF_001315885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter arboriphilus JCM 9315
  ORGANISM  Methanobrevibacter arboriphilus JCM 9315
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2279829)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBD00000000.1.
            The Methanobrevibacter arboriphilus JCM 9315 whole genome shotgun
            (WGS) project has the project accession NZ_BBBD00000000.  This
            version of the project (01) has the accession number
            NZ_BBBD01000000, and consists of sequences
            BBBD01000001-BBBD01000629.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 42x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001315885.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 04:41:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,484
            CDSs (total)                      :: 2,448
            Genes (coding)                    :: 2,058
            CDSs (with protein)               :: 2,058
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 390
            CDSs (without protein)            :: 390
            Pseudo Genes (ambiguous residues) :: 1 of 390
            Pseudo Genes (frameshifted)       :: 323 of 390
            Pseudo Genes (incomplete)         :: 68 of 390
            Pseudo Genes (internal stop)      :: 12 of 390
            Pseudo Genes (multiple problems)  :: 13 of 390
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279829
                     /organism="Methanobrevibacter arboriphilus JCM 9315"
                     /mol_type="genomic DNA"
                     /strain="JCM 9315"
                     /culture_collection="JCM:9315"
                     /db_xref="taxon:1293039"
WGS         BBBD01000001-BBBD01000629
WGS_SCAFLD  NZ_BBBD01000001-NZ_BBBD01000629
//
LOCUS       NZ_BBCW01000000      4926839 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina horonobensis HB-1 = JCM 15518, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBCW00000000
VERSION     NZ_BBCW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000526
            Sequence Read Archive: DRR017731
            Assembly: GCF_001316205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina horonobensis HB-1 = JCM 15518
  ORGANISM  Methanosarcina horonobensis HB-1 = JCM 15518
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4926839)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBCW00000000.1.
            The Methanosarcina horonobensis HB-1 = JCM 15518 whole genome
            shotgun (WGS) project has the project accession NZ_BBCW00000000.
            This version of the project (01) has the accession number
            NZ_BBCW01000000, and consists of sequences
            BBCW01000001-BBCW01000178.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 24x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316205.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:24:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,336
            CDSs (total)                      :: 6,276
            Genes (coding)                    :: 5,179
            CDSs (with protein)               :: 5,179
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1,097
            CDSs (without protein)            :: 1,097
            Pseudo Genes (ambiguous residues) :: 0 of 1,097
            Pseudo Genes (frameshifted)       :: 922 of 1,097
            Pseudo Genes (incomplete)         :: 231 of 1,097
            Pseudo Genes (internal stop)      :: 49 of 1,097
            Pseudo Genes (multiple problems)  :: 98 of 1,097
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4926839
                     /organism="Methanosarcina horonobensis HB-1 = JCM 15518"
                     /mol_type="genomic DNA"
                     /strain="JCM 15518"
                     /culture_collection="JCM:15518"
                     /type_material="type strain of Methanosarcina
                     horonobensis"
                     /db_xref="taxon:1434110"
WGS         BBCW01000001-BBCW01000178
WGS_SCAFLD  NZ_BBCW01000001-NZ_BBCW01000178
//
LOCUS       NZ_LOPU01000000      3929557 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloprofundus marisrubri strain SB9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LOPU00000000
VERSION     NZ_LOPU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04318426
            Assembly: GCF_001469955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloprofundus marisrubri
  ORGANISM  Haloprofundus marisrubri
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloprofundus.
REFERENCE   1  (bases 1 to 3929557)
  AUTHORS   Zhang,G., Stingl,U. and Rashid,M.
  TITLE     Haloprofundus marisrubri gen. nov., sp. nov., an extremely
            halophilic archaeon isolated from the Discovery deep brine-seawater
            interface in the Red Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3929557)
  AUTHORS   Zhang,G., Stingl,U. and Rashid,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2015) Red Sea Research Center, King Abdulah
            University of Science and Technology, Thuwal, Jeddah 23955-6900,
            Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LOPU00000000.1.
            The Haloprofundus marisrubri whole genome shotgun (WGS) project has
            the project accession NZ_LOPU00000000.  This version of the project
            (01) has the accession number NZ_LOPU01000000, and consists of
            sequences LOPU01000001-LOPU01000041.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: Velvet v. October-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001469955.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:28:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,045
            CDSs (total)                      :: 3,980
            Genes (coding)                    :: 3,936
            CDSs (with protein)               :: 3,936
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 7, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 7, 4 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 11 of 44
            Pseudo Genes (incomplete)         :: 35 of 44
            Pseudo Genes (internal stop)      :: 5 of 44
            Pseudo Genes (multiple problems)  :: 6 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3929557
                     /organism="Haloprofundus marisrubri"
                     /mol_type="genomic DNA"
                     /strain="SB9"
                     /isolation_source="brine-seawater interface"
                     /culture_collection="JCM:19565"
                     /type_material="type strain of Haloprofundus marisrubri"
                     /db_xref="taxon:1514971"
                     /geo_loc_name="Saudi Arabia: Discovery deep brine-seawater
                     interface, Red Sea"
                     /collection_date="2011-10-20"
                     /collected_by="Hikmawan Tyas"
                     /identified_by="Guishan Zhang"
WGS         LOPU01000001-LOPU01000041
WGS_SCAFLD  NZ_LOPU01000001-NZ_LOPU01000041
//
LOCUS       NZ_BCMZ01000000      3012807 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobacterium sp. CBA1132, whole genome shotgun sequencing project.
ACCESSION   NZ_BCMZ00000000
VERSION     NZ_BCMZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00043969
            Assembly: GCF_001485535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium sp. CBA1132
  ORGANISM  Halobacterium sp. CBA1132
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequences of Halobacterium sp. CBA1132
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3012807)
  AUTHORS   Roh,S.W. and Song,H.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2015) Contact:Seong Woon Roh Korea Basic Science
            Institute, Biological Disaster Analysis Group; 169-148 Gwahak-ro,
            Yuseong-gu, Daejeon 34133, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BCMZ00000000.1.
            The Halobacterium sp. CBA1132 whole genome shotgun (WGS) project
            has the project accession NZ_BCMZ00000000.  This version of the
            project (01) has the accession number NZ_BCMZ01000000, and consists
            of sequences BCMZ01000001-BCMZ01000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: PacBio SMRT Analysis v. 2.3.0
            Genome Coverage       :: 300x
            Sequencing Technology :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001485535.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:40:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,265
            CDSs (total)                      :: 3,214
            Genes (coding)                    :: 3,153
            CDSs (with protein)               :: 3,153
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 29 of 61
            Pseudo Genes (incomplete)         :: 37 of 61
            Pseudo Genes (internal stop)      :: 8 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3012807
                     /organism="Halobacterium sp. CBA1132"
                     /mol_type="genomic DNA"
                     /strain="CBA1132"
                     /isolation_source="solar salt"
                     /db_xref="taxon:1765057"
                     /geo_loc_name="South Korea"
WGS         BCMZ01000001-BCMZ01000004
WGS_SCAFLD  NZ_BCMZ01000001-NZ_BCMZ01000004
//
LOCUS       NZ_CSTE01000000      3991456 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax massiliensis strain Arc-Hr, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CSTE00000000
VERSION     NZ_CSTE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3309464
            Assembly: GCF_001368915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax massiliensis
  ORGANISM  Haloferax massiliensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1
  AUTHORS   Urmite Genomes Urmite,Genomes.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2015) URMITE, 27 Bd J Moulin, 13385 Marseille
            Cedex 05, France, 13385, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CSTE00000000.1.
            The Haloferax massiliensis whole genome shotgun (WGS) project has
            the project accession NZ_CSTE00000000.  This version of the project
            (01) has the accession number NZ_CSTE01000000, and consists of
            sequences CSTE01000001-CSTE01000008.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001368915.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:42:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,007
            CDSs (total)                      :: 3,947
            Genes (coding)                    :: 3,844
            CDSs (with protein)               :: 3,844
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 50 of 103
            Pseudo Genes (incomplete)         :: 62 of 103
            Pseudo Genes (internal stop)      :: 8 of 103
            Pseudo Genes (multiple problems)  :: 13 of 103
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3991456
                     /organism="Haloferax massiliensis"
                     /mol_type="genomic DNA"
                     /strain="Arc-Hr"
                     /type_material="type strain of Haloferax massiliensis"
                     /db_xref="taxon:1476858"
WGS         CSTE01000001-CSTE01000008
WGS_SCAFLD  NZ_CSTE01000001-NZ_CSTE01000008
//
LOCUS       NZ_LKIR01000000      3227884 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloparvum sedimenti strain DYS4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LKIR00000000
VERSION     NZ_LKIR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04018174
            Assembly: GCF_001462205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloparvum sedimenti
  ORGANISM  Haloparvum sedimenti
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloparvum.
REFERENCE   1  (bases 1 to 3227884)
  AUTHORS   Chen,S. and Xiang,H.
  TITLE     Genome sequence of Halopenitus sp. strain DYS4
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3227884)
  AUTHORS   Chen,S. and Xiang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-2015) Institute of Microbiology, Chinese Academy
            of Sciences, No.1 West Beichen Road, Beijing, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LKIR00000000.1.
            The Haloparvum sedimenti whole genome shotgun (WGS) project has the
            project accession NZ_LKIR00000000.  This version of the project
            (01) has the accession number NZ_LKIR01000000, and consists of
            sequences LKIR01000001-LKIR01000143.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: MAY-2015
            Assembly Method       :: Velvet v. May-2015
            Assembly Name         :: HalopeDYS1.0
            Genome Coverage       :: 207.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001462205.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:43:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,420
            CDSs (total)                      :: 3,366
            Genes (coding)                    :: 3,229
            CDSs (with protein)               :: 3,229
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 23 of 137
            Pseudo Genes (incomplete)         :: 114 of 137
            Pseudo Genes (internal stop)      :: 8 of 137
            Pseudo Genes (multiple problems)  :: 7 of 137
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227884
                     /organism="Haloparvum sedimenti"
                     /mol_type="genomic DNA"
                     /strain="DYS4"
                     /isolation_source="salt mine"
                     /type_material="type strain of Haloparvum sedimenti"
                     /db_xref="taxon:1678448"
                     /geo_loc_name="China: Yunnan"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing, Chen"
WGS         LKIR01000001-LKIR01000143
WGS_SCAFLD  NZ_LKIR01000001-NZ_LKIR01000143
//
LOCUS       NZ_LOPV01000000      3830759 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax profundi strain SB29, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LOPV00000000
VERSION     NZ_LOPV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04318427
            Assembly: GCF_001469865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax profundi
  ORGANISM  Haloferax profundi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3830759)
  AUTHORS   Zhang,G., Stingl,U. and Rashid,M.
  TITLE     Haloferax profundi sp. nov. isolated from the Discovery deep
            brine-seawater interface in the Red Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3830759)
  AUTHORS   Zhang,G., Stingl,U. and Rashid,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2015) Red Sea Research Center, King Abdulah
            University of Science and Technology, Thuwal, Jeddah 23955-6900,
            Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LOPV00000000.1.
            The Haloferax profundi whole genome shotgun (WGS) project has the
            project accession NZ_LOPV00000000.  This version of the project
            (01) has the accession number NZ_LOPV01000000, and consists of
            sequences LOPV01000001-LOPV01000716.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: Velvet v. September-2014
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001469865.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:48:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,253
            CDSs (total)                      :: 4,194
            Genes (coding)                    :: 3,888
            CDSs (with protein)               :: 3,888
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 306
            CDSs (without protein)            :: 306
            Pseudo Genes (ambiguous residues) :: 0 of 306
            Pseudo Genes (frameshifted)       :: 5 of 306
            Pseudo Genes (incomplete)         :: 302 of 306
            Pseudo Genes (internal stop)      :: 2 of 306
            Pseudo Genes (multiple problems)  :: 2 of 306
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3830759
                     /organism="Haloferax profundi"
                     /mol_type="genomic DNA"
                     /strain="SB29"
                     /isolation_source="brine-seawater interface"
                     /culture_collection="JCM:19567"
                     /type_material="type strain of Haloferax profundi"
                     /db_xref="taxon:1544718"
                     /geo_loc_name="Saudi Arabia: Discovery deep brine-seawater
                     interface, Red Sea"
                     /collection_date="2011-10-20"
                     /collected_by="Hikmawan Tyas"
                     /identified_by="Guishan Zhang"
WGS         LOPV01000001-LOPV01000716
WGS_SCAFLD  NZ_LOPV01000001-NZ_LOPV01000716
//
LOCUS       NZ_BCNA01000000      4184591 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarcula sp. CBA1128, whole genome shotgun sequencing project.
ACCESSION   NZ_BCNA00000000
VERSION     NZ_BCNA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00043970
            Assembly: GCF_001485555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. CBA1128
  ORGANISM  Haloarcula sp. CBA1128
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequences of Haloarcula sp. CBA1128
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4184591)
  AUTHORS   Roh,S.W. and Kim,J.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2015) Contact:Seong Woon Roh Korea Basic Science
            Institute, Biological Disaster Analysis Group; 169-148 Gwahak-ro,
            Yuseong-gu, Daejeon 34133, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BCNA00000000.1.
            The Haloarcula sp. CBA1128 whole genome shotgun (WGS) project has
            the project accession NZ_BCNA00000000.  This version of the project
            (01) has the accession number NZ_BCNA01000000, and consists of
            sequences BCNA01000001-BCNA01000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: PacBio SMRT Analysis v. 2.3.0
            Genome Coverage       :: 269x
            Sequencing Technology :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001485555.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:52:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,215
            CDSs (total)                      :: 4,155
            Genes (coding)                    :: 4,062
            CDSs (with protein)               :: 4,062
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 49 of 93
            Pseudo Genes (incomplete)         :: 55 of 93
            Pseudo Genes (internal stop)      :: 12 of 93
            Pseudo Genes (multiple problems)  :: 23 of 93
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4184591
                     /organism="Haloarcula sp. CBA1128"
                     /mol_type="genomic DNA"
                     /strain="CBA1128"
                     /isolation_source="solar salt"
                     /db_xref="taxon:1765056"
                     /geo_loc_name="South Korea"
WGS         BCNA01000001-BCNA01000006
WGS_SCAFLD  NZ_BCNA01000001-NZ_BCNA01000006
//
LOCUS       NZ_BCNB01000000      4359264 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarcula sp. CBA1127, whole genome shotgun sequencing project.
ACCESSION   NZ_BCNB00000000
VERSION     NZ_BCNB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00043971
            Assembly: GCF_001485575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. CBA1127
  ORGANISM  Haloarcula sp. CBA1127
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequences of Haloarcula sp. CBA1127
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4359264)
  AUTHORS   Roh,S.W. and Kim,J.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2015) Contact:Seong Woon Roh Korea Basic Science
            Institute, Biological Disaster Analysis Group; 169-148 Gwahak-ro,
            Yuseong-gu, Daejeon 34133, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BCNB00000000.1.
            The Haloarcula sp. CBA1127 whole genome shotgun (WGS) project has
            the project accession NZ_BCNB00000000.  This version of the project
            (01) has the accession number NZ_BCNB01000000, and consists of
            sequences BCNB01000001-BCNB01000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: PacBio SMRT Analysis v. 2.3.0
            Genome Coverage       :: 206x
            Sequencing Technology :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001485575.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:52:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,459
            CDSs (total)                      :: 4,398
            Genes (coding)                    :: 4,305
            CDSs (with protein)               :: 4,305
            Genes (RNA)                       :: 61
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 68 of 93
            Pseudo Genes (incomplete)         :: 48 of 93
            Pseudo Genes (internal stop)      :: 9 of 93
            Pseudo Genes (multiple problems)  :: 28 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4359264
                     /organism="Haloarcula sp. CBA1127"
                     /mol_type="genomic DNA"
                     /strain="CBA1127"
                     /isolation_source="solar salt"
                     /db_xref="taxon:1765055"
                     /geo_loc_name="South Korea"
WGS         BCNB01000001-BCNB01000009
WGS_SCAFLD  NZ_BCNB01000001-NZ_BCNB01000009
//
LOCUS       NZ_LFRO01000000      2044141 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Methanoculleus sp. DTU007, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LFRO00000000
VERSION     NZ_LFRO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03776756
            Assembly: GCF_001512385.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. DTU007 (anaerobic digester metagenome)
  ORGANISM  Methanoculleus sp. DTU007
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2044141)
  AUTHORS   Campanaro,S., Treu,L., Kougias,P.G., De Francisci,D., Valle,G. and
            Angelidaki,I.
  TITLE     Metagenomic analysis and functional characterization of the biogas
            microbiome using high throughput shotgun sequencing and a novel
            binning strategy
  JOURNAL   Biotechnol Biofuels 9, 26 (2016)
   PUBMED   26839589
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044141)
  AUTHORS   Campanaro,S., Treu,L., Kougias,P.G., De Francisci,D. and
            Angelidaki,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUN-2015) Department of Environmental Engineering,
            Technical University of Denmark, Miljovej, Building 113, Kgs.
            Lyngby 2800, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFRO00000000.1.
            The Methanoculleus sp. DTU007 whole genome shotgun (WGS) project
            has the project accession NZ_LFRO00000000.  This version of the
            project (01) has the accession number NZ_LFRO01000000, and consists
            of sequences LFRO01000001-LFRO01000106.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: CLC NGS Cell v. OCT-2014
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001512385.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 08:17:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,207
            CDSs (total)                      :: 2,155
            Genes (coding)                    :: 2,098
            CDSs (with protein)               :: 2,098
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 9 of 57
            Pseudo Genes (incomplete)         :: 48 of 57
            Pseudo Genes (internal stop)      :: 0 of 57
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044141
                     /organism="Methanoculleus sp. DTU007"
                     /mol_type="genomic DNA"
                     /isolate="DTU007"
                     /isolation_source="pool of bioreactors CSTR01a, CSTR02a,
                     and CSTR03a; thermophilic anaerobic digestion of cattle
                     manure in continuous reactors for biogas production
                     (methane)"
                     /db_xref="taxon:1671626"
                     /environmental_sample
                     /geo_loc_name="Denmark: Kgs. Lyngby"
                     /lat_lon="55.788338 N 12.526485 E"
                     /collection_date="2014-05-21"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         LFRO01000001-LFRO01000106
WGS_SCAFLD  NZ_LFRO01000001-NZ_LFRO01000106
//
LOCUS       NZ_LGGL01000000      2173293 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Methanobacterium sp. 42_16, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LGGL00000000
VERSION     NZ_LGGL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03445165
            Assembly: GCF_001509005.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. 42_16 (terrestrial metagenome)
  ORGANISM  Methanobacterium sp. 42_16
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2173293)
  AUTHORS   Hu,P., Tom,L., Singh,A., Thomas,B.C., Baker,B.J., Piceno,Y.M.,
            Andersen,G.L. and Banfield,J.F.
  TITLE     Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate
            Phyla and Other Microbial Community Members in Biogeochemical
            Transformations in Oil Reservoirs
  JOURNAL   mBio 7 (1), e01669-e01615 (2016)
   PUBMED   26787827
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173293)
  AUTHORS   Hu,P., Tom,L., Singh,A., Thomas,B.C., Baker,B.J., Piceno,Y.M.,
            Andersen,G.L. and Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2015) Ecology, Lawrence Berkeley National Lab, 1
            Cyclotron Rd, Berkeley, CA 94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LGGL00000000.1.
            The Methanobacterium sp. 42_16 whole genome shotgun (WGS) project
            has the project accession NZ_LGGL00000000.  This version of the
            project (01) has the accession number NZ_LGGL01000000, and consists
            of sequences LGGL01000001-LGGL01000219.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: idba_ud v. 1.1.1
            Genome Coverage       :: 16.65x
            Sequencing Technology :: Illumina HiSeq2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001509005.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 08:18:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,280
            CDSs (total)                      :: 2,237
            Genes (coding)                    :: 2,196
            CDSs (with protein)               :: 2,196
            Genes (RNA)                       :: 43
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 0 of 41
            Pseudo Genes (incomplete)         :: 41 of 41
            Pseudo Genes (internal stop)      :: 0 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173293
                     /organism="Methanobacterium sp. 42_16"
                     /mol_type="genomic DNA"
                     /isolate="42_16"
                     /isolation_source="oil reservoir sample SB1"
                     /db_xref="taxon:1641383"
                     /environmental_sample
                     /geo_loc_name="USA:Alaska, North Slope, Schrader Bluff
                     formation"
                     /collection_date="2011"
                     /metagenome_source="terrestrial metagenome"
                     /metagenomic
WGS         LGGL01000001-LGGL01000219
WGS_SCAFLD  NZ_LGGL01000001-NZ_LGGL01000219
//
LOCUS       NZ_LGFD01000000      1890359 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Thermococcus sibiricus isolate 41_94_, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LGFD00000000
VERSION     NZ_LGFD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03445129
            Assembly: GCF_001508065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sibiricus (terrestrial metagenome)
  ORGANISM  Thermococcus sibiricus
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1890359)
  AUTHORS   Hu,P., Tom,L., Singh,A., Thomas,B.C., Baker,B.J., Piceno,Y.M.,
            Andersen,G.L. and Banfield,J.F.
  TITLE     Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate
            Phyla and Other Microbial Community Members in Biogeochemical
            Transformations in Oil Reservoirs
  JOURNAL   mBio 7 (1), e01669-e01615 (2016)
   PUBMED   26787827
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890359)
  AUTHORS   Hu,P., Tom,L., Singh,A., Thomas,B.C., Baker,B.J., Piceno,Y.M.,
            Andersen,G.L. and Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2015) Ecology, Lawrence Berkeley National Lab, 1
            Cyclotron Rd, Berkeley, CA 94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LGFD00000000.1.
            The Thermococcus sibiricus whole genome shotgun (WGS) project has
            the project accession NZ_LGFD00000000.  This version of the project
            (01) has the accession number NZ_LGFD01000000, and consists of
            sequences LGFD01000001-LGFD01000107.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: idba_ud v. 1.1.1
            Genome Coverage       :: 155.78x
            Sequencing Technology :: Illumina HiSeq2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001508065.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 08:26:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,144
            CDSs (total)                      :: 2,098
            Genes (coding)                    :: 2,029
            CDSs (with protein)               :: 2,029
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 16 of 69
            Pseudo Genes (incomplete)         :: 57 of 69
            Pseudo Genes (internal stop)      :: 7 of 69
            Pseudo Genes (multiple problems)  :: 9 of 69
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890359
                     /organism="Thermococcus sibiricus"
                     /mol_type="genomic DNA"
                     /isolate="41_94_"
                     /isolation_source="oil reservoir sample K2"
                     /db_xref="taxon:172049"
                     /environmental_sample
                     /geo_loc_name="USA:Alaska, North Slope, Kuparuk formation"
                     /collection_date="2013"
                     /metagenome_source="terrestrial metagenome"
                     /metagenomic
WGS         LGFD01000001-LGFD01000107
WGS_SCAFLD  NZ_LGFD01000001-NZ_LGFD01000107
//
LOCUS       NZ_LOAJ01000000      3325770 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum aethiopicum strain SAH-A6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LOAJ00000000
VERSION     NZ_LOAJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04278861
            Assembly: GCF_001542905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum aethiopicum
  ORGANISM  Halorubrum aethiopicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3325770)
  AUTHORS   Gibtan,A., Woo,M., Lee,Y.-J., Lee,D.-W., Shin,J.-K., Kim,B.-C.,
            Lee,S.-J. and Lee,H.-S.
  TITLE     Draft genome sequence of Halorubrum sp. SAH-A6 strain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3325770)
  AUTHORS   Gibtan,A., Woo,M., Lee,Y.-J., Lee,D.-W., Shin,J.-K., Kim,B.-C.,
            Lee,S.-J. and Lee,H.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-NOV-2015) Food Biotechnology, Silla University,
            Gwaebup-Dong, Sasang Gu Number 700, Busan 617-736, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LOAJ00000000.1.
            The Halorubrum aethiopicum whole genome shotgun (WGS) project has
            the project accession NZ_LOAJ00000000.  This version of the project
            (01) has the accession number NZ_LOAJ01000000, and consists of
            sequences LOAJ01000001-LOAJ01000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 21-SEP-2015
            Assembly Method        :: CLC NGS Cell v. 1.50; PacBio SMRT
                                      Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 294.93x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001542905.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 08:28:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,325
            CDSs (total)                      :: 3,268
            Genes (coding)                    :: 3,196
            CDSs (with protein)               :: 3,196
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 43 of 72
            Pseudo Genes (incomplete)         :: 29 of 72
            Pseudo Genes (internal stop)      :: 7 of 72
            Pseudo Genes (multiple problems)  :: 7 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3325770
                     /organism="Halorubrum aethiopicum"
                     /mol_type="genomic DNA"
                     /strain="SAH-A6"
                     /isolation_source="rock salt obtained from Danakil
                     depression in Ethiopia"
                     /type_material="type strain of Halorubrum aethiopicum"
                     /db_xref="taxon:1758255"
                     /geo_loc_name="South Korea"
                     /collection_date="2014-02"
WGS         LOAJ01000001-LOAJ01000003
WGS_SCAFLD  NZ_LOAJ01000001-NZ_LOAJ01000003
//
LOCUS       NZ_BCNW01000000      2713913 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanofollis ethanolicus strain JCM 15103, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BCNW00000000
VERSION     NZ_BCNW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00044721
            Assembly: GCF_001571385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanofollis ethanolicus
  ORGANISM  Methanofollis ethanolicus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanofollis.
REFERENCE   1
  AUTHORS   Narihiro,T., Kusada,H., Yoneda,Y. and Tamaki,H.
  TITLE     Draft Genome Sequences of Methanoculleus horonobensis Strain JCM
            15517, Methanoculleus thermophilus Strain DSM 2373, and
            Methanofollis ethanolicus Strain JCM 15103, Hydrogenotrophic
            Methanogens Belonging to the Family Methanomicrobiaceae
  JOURNAL   Genome Announc 4 (2), e00199-16 (2016)
   PUBMED   27034500
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2713913)
  AUTHORS   Narihiro,T., Tamaki,H., Tamazawa,S. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2016) Contact:Takashi Narihiro National Institute
            of Advanced Industrial Science and Technology (AIST), Bioproduction
            Research Institute; Central 6, Higashi 1-1-1, Tsukuba, Ibaraki
            305-8566, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BCNW00000000.1.
            The Methanofollis ethanolicus whole genome shotgun (WGS) project
            has the project accession NZ_BCNW00000000.  This version of the
            project (01) has the accession number NZ_BCNW01000000, and consists
            of sequences BCNW01000001-BCNW01000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes Genome Assembler v. 3.5.0
            Genome Coverage       :: 2195x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001571385.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 08:45:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,713
            CDSs (total)                      :: 2,656
            Genes (coding)                    :: 2,639
            CDSs (with protein)               :: 2,639
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 2 of 17
            Pseudo Genes (incomplete)         :: 16 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713913
                     /organism="Methanofollis ethanolicus"
                     /mol_type="genomic DNA"
                     /strain="JCM 15103"
                     /culture_collection="JCM:15103"
                     /type_material="type strain of Methanofollis ethanolicus"
                     /db_xref="taxon:488124"
WGS         BCNW01000001-BCNW01000003
WGS_SCAFLD  NZ_BCNW01000001-NZ_BCNW01000003
//
LOCUS       NZ_FOIW01000000      2065554 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Thermococcus thioreducens strain OGL-20P, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOIW00000000
VERSION     NZ_FOIW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216170
            Assembly: GCF_900109425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus thioreducens
  ORGANISM  Thermococcus thioreducens
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOIW00000000.1.
            The Thermococcus thioreducens whole genome shotgun (WGS) project
            has the project accession NZ_FOIW00000000.  This version of the
            project (01) has the accession number NZ_FOIW01000000, and consists
            of sequences FOIW01000001-FOIW01000003.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900109425.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:12:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,365
            CDSs (total)                      :: 2,313
            Genes (coding)                    :: 2,292
            CDSs (with protein)               :: 2,292
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 8 of 21
            Pseudo Genes (incomplete)         :: 13 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 4 of 21
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065554
                     /organism="Thermococcus thioreducens"
                     /mol_type="genomic DNA"
                     /strain="OGL-20P"
                     /type_material="type strain of Thermococcus thioreducens"
                     /db_xref="taxon:277988"
WGS         FOIW01000001-FOIW01000003
WGS_SCAFLD  NZ_FOIW01000001-NZ_FOIW01000003
//
LOCUS       NZ_LZPM01000000      3329516 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobacterium sp. A39, whole genome shotgun sequencing project.
ACCESSION   NZ_LZPM00000000
VERSION     NZ_LZPM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05224566
            Assembly: GCF_001729285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium sp. A39
  ORGANISM  Methanobacterium sp. A39
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 3329516)
  AUTHORS   Woodcroft,B.J.
  TITLE     Validation of picogram- and femtogram-input DNA libraries for
            microscale metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3329516)
  AUTHORS   Woodcroft,B.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2016) School of Chemistry & Molecular
            Biosciences, Australian Centre for Ecogenomics, The University of
            Queensland, Molecular Biosciences Building, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LZPM00000000.1.
            The Methanobacterium sp. A39 whole genome shotgun (WGS) project has
            the project accession NZ_LZPM00000000.  This version of the project
            (01) has the accession number NZ_LZPM01000000, and consists of
            sequences LZPM01000001-LZPM01000070.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001729285.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:02:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,311
            CDSs (total)                      :: 3,266
            Genes (coding)                    :: 3,243
            CDSs (with protein)               :: 3,243
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 9 of 23
            Pseudo Genes (incomplete)         :: 11 of 23
            Pseudo Genes (internal stop)      :: 7 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329516
                     /organism="Methanobacterium sp. A39"
                     /mol_type="genomic DNA"
                     /strain="A39"
                     /db_xref="taxon:1860100"
                     /geo_loc_name="Australia"
                     /collection_date="2014"
WGS         LZPM01000001-LZPM01000070
WGS_SCAFLD  NZ_LZPM01000001-NZ_LZPM01000070
//
LOCUS       NZ_LRHL01000000      4331726 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarcula sp. K1, whole genome shotgun sequencing project.
ACCESSION   NZ_LRHL00000000
VERSION     NZ_LRHL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04390187
            Assembly: GCF_001647155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. K1
  ORGANISM  Haloarcula sp. K1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4331726)
  AUTHORS   Prasad,S.E., Nair,G.R., Verma,D., Kaur,G., Gopal,K. and Mayilraj,S.
  TITLE     Haloarcula sp strain K1 genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4331726)
  AUTHORS   Prasad,S.E., Nair,G.R., Verma,D., Kaur,G., Gopal,K. and Mayilraj,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2016) Microbial Type Culture Collection and Gene
            Bank, Institute of Microbial Technology, 39A, Chandigarh,
            Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LRHL00000000.1.
            The Haloarcula sp. K1 whole genome shotgun (WGS) project has the
            project accession NZ_LRHL00000000.  This version of the project
            (01) has the accession number NZ_LRHL01000000, and consists of
            sequences LRHL01000001-LRHL01000046.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 23-DEC-2015
            Assembly Method        :: CLC NGS Cell v. 7.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001647155.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:56:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,400
            CDSs (total)                      :: 4,345
            Genes (coding)                    :: 4,267
            CDSs (with protein)               :: 4,267
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 36 of 78
            Pseudo Genes (incomplete)         :: 53 of 78
            Pseudo Genes (internal stop)      :: 14 of 78
            Pseudo Genes (multiple problems)  :: 24 of 78
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4331726
                     /organism="Haloarcula sp. K1"
                     /mol_type="genomic DNA"
                     /strain="K1"
                     /isolation_source="soil"
                     /db_xref="taxon:1622207"
                     /geo_loc_name="India: Tamilnadu, Kanyakumari"
                     /collection_date="2012-08-17"
WGS         LRHL01000001-LRHL01000046
WGS_SCAFLD  NZ_LRHL01000001-NZ_LRHL01000046
//
LOCUS       NZ_LWMW01000000      2608702 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter cuticularis strain DSM 11139, whole genome
            shotgun sequencing project.
ACCESSION   NZ_LWMW00000000
VERSION     NZ_LWMW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04867344
            Assembly: GCF_001639285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter cuticularis
  ORGANISM  Methanobrevibacter cuticularis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2608702)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Genome sequence of Methanobrevibacter cuticularis DSM 11139
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2608702)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2016) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisenachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWMW00000000.1.
            The Methanobrevibacter cuticularis whole genome shotgun (WGS)
            project has the project accession NZ_LWMW00000000.  This version of
            the project (01) has the accession number NZ_LWMW01000000, and
            consists of sequences LWMW01000001-LWMW01000169.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.0
            Genome Coverage       :: 234x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001639285.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:58:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,197
            CDSs (total)                      :: 2,157
            Genes (coding)                    :: 2,123
            CDSs (with protein)               :: 2,123
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 3 of 34
            Pseudo Genes (incomplete)         :: 33 of 34
            Pseudo Genes (internal stop)      :: 0 of 34
            Pseudo Genes (multiple problems)  :: 2 of 34
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608702
                     /organism="Methanobrevibacter cuticularis"
                     /mol_type="genomic DNA"
                     /strain="DSM 11139"
                     /isolation_source="hindguts"
                     /host="Reticulitermes flavipes"
                     /culture_collection="DSM:11139"
                     /type_material="type strain of Methanobrevibacter
                     cuticularis"
                     /db_xref="taxon:47311"
WGS         LWMW01000001-LWMW01000169
WGS_SCAFLD  NZ_LWMW01000001-NZ_LWMW01000169
//
LOCUS       NZ_FNWU01000000      3136583 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halopenitus malekzadehii strain IBRC-M10418, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNWU00000000
VERSION     NZ_FNWU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05192561
            Assembly: GCF_900108505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopenitus malekzadehii
  ORGANISM  Halopenitus malekzadehii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halopenitus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNWU00000000.1.
            The Halopenitus malekzadehii whole genome shotgun (WGS) project has
            the project accession NZ_FNWU00000000.  This version of the project
            (01) has the accession number NZ_FNWU01000000, and consists of
            sequences FNWU01000001-FNWU01000041.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900108505.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:07:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,195
            CDSs (total)                      :: 3,139
            Genes (coding)                    :: 3,050
            CDSs (with protein)               :: 3,050
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 27 of 89
            Pseudo Genes (incomplete)         :: 71 of 89
            Pseudo Genes (internal stop)      :: 20 of 89
            Pseudo Genes (multiple problems)  :: 21 of 89
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136583
                     /organism="Halopenitus malekzadehii"
                     /mol_type="genomic DNA"
                     /strain="IBRC-M10418"
                     /db_xref="taxon:1267564"
WGS         FNWU01000001-FNWU01000041
WGS_SCAFLD  NZ_FNWU01000001-NZ_FNWU01000041
//
LOCUS       NZ_FNPC01000000      3424376 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halopenitus persicus strain DC30,IBRC 10041,KCTC 4046, whole genome
            shotgun sequencing project.
ACCESSION   NZ_FNPC00000000
VERSION     NZ_FNPC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216564
            Assembly: GCF_900107205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopenitus persicus
  ORGANISM  Halopenitus persicus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halopenitus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNPC00000000.1.
            The Halopenitus persicus whole genome shotgun (WGS) project has the
            project accession NZ_FNPC00000000.  This version of the project
            (01) has the accession number NZ_FNPC01000000, and consists of
            sequences FNPC01000001-FNPC01000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900107205.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:05:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,419
            CDSs (total)                      :: 3,352
            Genes (coding)                    :: 3,244
            CDSs (with protein)               :: 3,244
            Genes (RNA)                       :: 67
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 35 of 108
            Pseudo Genes (incomplete)         :: 88 of 108
            Pseudo Genes (internal stop)      :: 19 of 108
            Pseudo Genes (multiple problems)  :: 29 of 108
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3424376
                     /organism="Halopenitus persicus"
                     /mol_type="genomic DNA"
                     /strain="DC30,IBRC 10041,KCTC 4046"
                     /db_xref="taxon:1048396"
WGS         FNPC01000001-FNPC01000027
WGS_SCAFLD  NZ_FNPC01000001-NZ_FNPC01000027
//
LOCUS       NZ_FNIA01000000      3768596 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarchaeobius iranensis strain EB21,IBRC-M 10013,KCTC 4048, whole
            genome shotgun sequencing project.
ACCESSION   NZ_FNIA00000000
VERSION     NZ_FNIA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05192554
            Assembly: GCF_900103505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius iranensis
  ORGANISM  Haloarchaeobius iranensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNIA00000000.1.
            The Haloarchaeobius iranensis whole genome shotgun (WGS) project
            has the project accession NZ_FNIA00000000.  This version of the
            project (01) has the accession number NZ_FNIA01000000, and consists
            of sequences FNIA01000001-FNIA01000073.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900103505.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:09:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,945
            CDSs (total)                      :: 3,890
            Genes (coding)                    :: 3,765
            CDSs (with protein)               :: 3,765
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 15 of 125
            Pseudo Genes (incomplete)         :: 110 of 125
            Pseudo Genes (internal stop)      :: 10 of 125
            Pseudo Genes (multiple problems)  :: 8 of 125
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3768596
                     /organism="Haloarchaeobius iranensis"
                     /mol_type="genomic DNA"
                     /strain="EB21,IBRC-M 10013,KCTC 4048"
                     /db_xref="taxon:996166"
WGS         FNIA01000001-FNIA01000073
WGS_SCAFLD  NZ_FNIA01000001-NZ_FNIA01000073
//
LOCUS       NZ_FOXI01000000      3160633 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOXI00000000
VERSION     NZ_FOXI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216277
            Assembly: GCF_900115675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina pelagica
  ORGANISM  Halolamina pelagica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOXI00000000.1.
            The Halolamina pelagica whole genome shotgun (WGS) project has the
            project accession NZ_FOXI00000000.  This version of the project
            (01) has the accession number NZ_FOXI01000000, and consists of
            sequences FOXI01000001-FOXI01000037.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900115675.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:07:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,305
            CDSs (total)                      :: 3,252
            Genes (coding)                    :: 3,182
            CDSs (with protein)               :: 3,182
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 19 of 70
            Pseudo Genes (incomplete)         :: 52 of 70
            Pseudo Genes (internal stop)      :: 6 of 70
            Pseudo Genes (multiple problems)  :: 7 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160633
                     /organism="Halolamina pelagica"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10329"
                     /type_material="type strain of Halolamina pelagica"
                     /db_xref="taxon:699431"
WGS         FOXI01000001-FOXI01000037
WGS_SCAFLD  NZ_FOXI01000001-NZ_FOXI01000037
//
LOCUS       NZ_FNBK01000000      4027714 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorientalis regularis strain IBRC-M 10760, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNBK00000000
VERSION     NZ_FNBK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216218
            Assembly: GCF_900102305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis regularis
  ORGANISM  Halorientalis regularis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNBK00000000.1.
            The Halorientalis regularis whole genome shotgun (WGS) project has
            the project accession NZ_FNBK00000000.  This version of the project
            (01) has the accession number NZ_FNBK01000000, and consists of
            sequences FNBK01000001-FNBK01000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900102305.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:10:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,281
            CDSs (total)                      :: 4,208
            Genes (coding)                    :: 4,074
            CDSs (with protein)               :: 4,074
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 63
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 35 of 134
            Pseudo Genes (incomplete)         :: 96 of 134
            Pseudo Genes (internal stop)      :: 31 of 134
            Pseudo Genes (multiple problems)  :: 24 of 134
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4027714
                     /organism="Halorientalis regularis"
                     /mol_type="genomic DNA"
                     /strain="IBRC-M 10760"
                     /db_xref="taxon:660518"
WGS         FNBK01000001-FNBK01000055
WGS_SCAFLD  NZ_FNBK01000001-NZ_FNBK01000055
//
LOCUS       NZ_FOOQ01000000      3529311 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOOQ00000000
VERSION     NZ_FOOQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488063
            Assembly: GCF_900113245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopelagius inordinatus
  ORGANISM  Halopelagius inordinatus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOOQ00000000.1.
            The Halopelagius inordinatus whole genome shotgun (WGS) project has
            the project accession NZ_FOOQ00000000.  This version of the project
            (01) has the accession number NZ_FOOQ01000000, and consists of
            sequences FOOQ01000001-FOOQ01000014.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900113245.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:09:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,650
            CDSs (total)                      :: 3,591
            Genes (coding)                    :: 3,562
            CDSs (with protein)               :: 3,562
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 7 of 29
            Pseudo Genes (incomplete)         :: 22 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3529311
                     /organism="Halopelagius inordinatus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.7739"
                     /type_material="type strain of Halopelagius inordinatus"
                     /db_xref="taxon:553467"
WGS         FOOQ01000001-FOOQ01000014
WGS_SCAFLD  NZ_FOOQ01000001-NZ_FOOQ01000014
//
LOCUS       NZ_FOJA01000000      2952792 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobacterium jilantaiense strain CGMCC 1.5337, whole genome
            shotgun sequencing project.
ACCESSION   NZ_FOJA00000000
VERSION     NZ_FOJA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04487945
            Assembly: GCF_900110535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium jilantaiense
  ORGANISM  Halobacterium jilantaiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOJA00000000.1.
            The Halobacterium jilantaiense whole genome shotgun (WGS) project
            has the project accession NZ_FOJA00000000.  This version of the
            project (01) has the accession number NZ_FOJA01000000, and consists
            of sequences FOJA01000001-FOJA01000002.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900110535.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:07:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,133
            CDSs (total)                      :: 3,081
            Genes (coding)                    :: 3,058
            CDSs (with protein)               :: 3,058
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 8 of 23
            Pseudo Genes (incomplete)         :: 16 of 23
            Pseudo Genes (internal stop)      :: 4 of 23
            Pseudo Genes (multiple problems)  :: 5 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952792
                     /organism="Halobacterium jilantaiense"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.5337"
                     /type_material="type strain of Halobacterium jilantaiense"
                     /db_xref="taxon:355548"
WGS         FOJA01000001-FOJA01000002
WGS_SCAFLD  NZ_FOJA01000001-NZ_FOJA01000002
//
LOCUS       NZ_FOYN01000000      3030523 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum sodomense strain RD 26, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FOYN00000000
VERSION     NZ_FOYN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04487937
            Assembly: GCF_900111935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sodomense
  ORGANISM  Halorubrum sodomense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOYN00000000.1.
            The Halorubrum sodomense whole genome shotgun (WGS) project has the
            project accession NZ_FOYN00000000.  This version of the project
            (01) has the accession number NZ_FOYN01000000, and consists of
            sequences FOYN01000001-FOYN01000009.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900111935.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:08:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,093
            CDSs (total)                      :: 3,036
            Genes (coding)                    :: 3,005
            CDSs (with protein)               :: 3,005
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 6 of 31
            Pseudo Genes (incomplete)         :: 23 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 3 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030523
                     /organism="Halorubrum sodomense"
                     /mol_type="genomic DNA"
                     /strain="RD 26"
                     /type_material="type strain of Halorubrum sodomense"
                     /db_xref="taxon:35743"
                     /lat_lon="31.448584 N 35.403503 E"
WGS         FOYN01000001-FOYN01000009
WGS_SCAFLD  NZ_FOYN01000001-NZ_FOYN01000009
//
LOCUS       NZ_LTAZ01000000      3980410 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halalkalicoccus paucihalophilus strain DSM 24557, whole genome
            shotgun sequencing project.
ACCESSION   NZ_LTAZ00000000
VERSION     NZ_LTAZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04516086
            Assembly: GCF_001593955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus paucihalophilus
  ORGANISM  Halalkalicoccus paucihalophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 3980410)
  AUTHORS   Poehlein,A. and Daniel,R.
  TITLE     Genome sequence of Halalkalicoccus paucihalophilus DSM 24557
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3980410)
  AUTHORS   Poehlein,A. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2016) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LTAZ00000000.1.
            The Halalkalicoccus paucihalophilus whole genome shotgun (WGS)
            project has the project accession NZ_LTAZ00000000.  This version of
            the project (01) has the accession number NZ_LTAZ01000000, and
            consists of sequences LTAZ01000001-LTAZ01000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.6.0
            Genome Coverage       :: 208x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001593955.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:08:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,138
            CDSs (total)                      :: 4,082
            Genes (coding)                    :: 3,942
            CDSs (with protein)               :: 3,942
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 60 of 140
            Pseudo Genes (incomplete)         :: 102 of 140
            Pseudo Genes (internal stop)      :: 29 of 140
            Pseudo Genes (multiple problems)  :: 35 of 140
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3980410
                     /organism="Halalkalicoccus paucihalophilus"
                     /mol_type="genomic DNA"
                     /strain="DSM 24557"
                     /isolation_source="soil"
                     /culture_collection="DSM:24557"
                     /type_material="type strain of Halalkalicoccus
                     paucihalophilus"
                     /db_xref="taxon:1008153"
                     /geo_loc_name="China: Xinjiang Province"
WGS         LTAZ01000001-LTAZ01000023
WGS_SCAFLD  NZ_LTAZ01000001-NZ_LTAZ01000023
//
LOCUS       NZ_FNQT01000000      2776504 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloplanus vescus strain CGMCC 1.8712, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNQT00000000
VERSION     NZ_FNQT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488065
            Assembly: GCF_900107665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus vescus
  ORGANISM  Haloplanus vescus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNQT00000000.1.
            The Haloplanus vescus whole genome shotgun (WGS) project has the
            project accession NZ_FNQT00000000.  This version of the project
            (01) has the accession number NZ_FNQT01000000, and consists of
            sequences FNQT01000001-FNQT01000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900107665.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:07:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,969
            CDSs (total)                      :: 2,912
            Genes (coding)                    :: 2,889
            CDSs (with protein)               :: 2,889
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 4 of 23
            Pseudo Genes (incomplete)         :: 21 of 23
            Pseudo Genes (internal stop)      :: 0 of 23
            Pseudo Genes (multiple problems)  :: 2 of 23
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776504
                     /organism="Haloplanus vescus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.8712"
                     /type_material="type strain of Haloplanus vescus"
                     /db_xref="taxon:555874"
WGS         FNQT01000001-FNQT01000010
WGS_SCAFLD  NZ_FNQT01000001-NZ_FNQT01000010
//
LOCUS       NZ_FNYR01000000      3284590 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halohasta litchfieldiae strain DSM 22187, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNYR00000000
VERSION     NZ_FNYR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05444271
            Assembly: GCF_900109065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halohasta litchfieldiae
  ORGANISM  Halohasta litchfieldiae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halohasta.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNYR00000000.1.
            The Halohasta litchfieldiae whole genome shotgun (WGS) project has
            the project accession NZ_FNYR00000000.  This version of the project
            (01) has the accession number NZ_FNYR01000000, and consists of
            sequences FNYR01000001-FNYR01000078.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900109065.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:08:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,437
            CDSs (total)                      :: 3,384
            Genes (coding)                    :: 3,296
            CDSs (with protein)               :: 3,296
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 21 of 88
            Pseudo Genes (incomplete)         :: 74 of 88
            Pseudo Genes (internal stop)      :: 7 of 88
            Pseudo Genes (multiple problems)  :: 13 of 88
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3284590
                     /organism="Halohasta litchfieldiae"
                     /mol_type="genomic DNA"
                     /strain="DSM 22187"
                     /type_material="type strain of Halohasta litchfieldiae"
                     /db_xref="taxon:1073996"
WGS         FNYR01000001-FNYR01000078
WGS_SCAFLD  NZ_FNYR01000001-NZ_FNYR01000078
//
LOCUS       NZ_FNKQ01000000      3871751 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halopelagius longus strain CGMCC 1.12397, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNKQ00000000
VERSION     NZ_FNKQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216278
            Assembly: GCF_900100875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopelagius longus
  ORGANISM  Halopelagius longus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNKQ00000000.1.
            The Halopelagius longus whole genome shotgun (WGS) project has the
            project accession NZ_FNKQ00000000.  This version of the project
            (01) has the accession number NZ_FNKQ01000000, and consists of
            sequences FNKQ01000001-FNKQ01000009.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900100875.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:09:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,876
            CDSs (total)                      :: 3,818
            Genes (coding)                    :: 3,780
            CDSs (with protein)               :: 3,780
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 5 of 38
            Pseudo Genes (incomplete)         :: 33 of 38
            Pseudo Genes (internal stop)      :: 2 of 38
            Pseudo Genes (multiple problems)  :: 2 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3871751
                     /organism="Halopelagius longus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12397"
                     /type_material="type strain of Halopelagius longus"
                     /db_xref="taxon:1236180"
WGS         FNKQ01000001-FNKQ01000009
WGS_SCAFLD  NZ_FNKQ01000001-NZ_FNKQ01000009
//
LOCUS       NZ_FQWV01000000      3207756 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobaculum gomorrense strain DSM 9297, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FQWV00000000
VERSION     NZ_FQWV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05443636
            Assembly: GCF_900129775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum gomorrense
  ORGANISM  Halobaculum gomorrense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FQWV00000000.1.
            The Halobaculum gomorrense whole genome shotgun (WGS) project has
            the project accession NZ_FQWV00000000.  This version of the project
            (01) has the accession number NZ_FQWV01000000, and consists of
            sequences FQWV01000001-FQWV01000016.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900129775.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:11:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,273
            CDSs (total)                      :: 3,221
            Genes (coding)                    :: 3,165
            CDSs (with protein)               :: 3,165
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 12 of 56
            Pseudo Genes (incomplete)         :: 46 of 56
            Pseudo Genes (internal stop)      :: 4 of 56
            Pseudo Genes (multiple problems)  :: 6 of 56
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3207756
                     /organism="Halobaculum gomorrense"
                     /mol_type="genomic DNA"
                     /strain="DSM 9297"
                     /type_material="type strain of Halobaculum gomorrense"
                     /db_xref="taxon:43928"
                     /geo_loc_name="Israel:Dead Sea, Israel"
                     /lat_lon="31.496 N 35.496 E"
WGS         FQWV01000001-FQWV01000016
WGS_SCAFLD  NZ_FQWV01000001-NZ_FQWV01000016
//
LOCUS       NZ_MEIH01000000      5192569 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haladaptatus sp. W1, whole genome shotgun sequencing project.
ACCESSION   NZ_MEIH00000000
VERSION     NZ_MEIH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05725119
            Assembly: GCF_001723155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. W1
  ORGANISM  Haladaptatus sp. W1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 5192569)
  AUTHORS   Mcgenity,T.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2016) School of Biological Sciences, University
            of Essex, Wivenhoe Park, Colchester, Essex CO4 3SQ, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MEIH00000000.1.
            The Haladaptatus sp. W1 whole genome shotgun (WGS) project has the
            project accession NZ_MEIH00000000.  This version of the project
            (01) has the accession number NZ_MEIH01000000, and consists of
            sequences MEIH01000001-MEIH01000420.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2015
            Assembly Method        :: Celera Assembler v. 8.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001723155.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:13:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,743
            CDSs (total)                      :: 5,679
            Genes (coding)                    :: 5,159
            CDSs (with protein)               :: 5,159
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 520
            CDSs (without protein)            :: 520
            Pseudo Genes (ambiguous residues) :: 0 of 520
            Pseudo Genes (frameshifted)       :: 236 of 520
            Pseudo Genes (incomplete)         :: 328 of 520
            Pseudo Genes (internal stop)      :: 17 of 520
            Pseudo Genes (multiple problems)  :: 55 of 520
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5192569
                     /organism="Haladaptatus sp. W1"
                     /mol_type="genomic DNA"
                     /strain="W1"
                     /isolation_source="Warham Salt Marsh creek"
                     /db_xref="taxon:1897478"
                     /geo_loc_name="United Kingdom: Warham salt marsh"
                     /lat_lon="52.9622 N 0.89630098 E"
                     /collection_date="1999-12-01"
                     /collected_by="Terry McGenity"
WGS         MEIH01000001-MEIH01000420
WGS_SCAFLD  NZ_MEIH01000001-NZ_MEIH01000420
//
LOCUS       NZ_FRAN01000000      4283698 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haladaptatus paucihalophilus DX253, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FRAN00000000
VERSION     NZ_FRAN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05444342
            Assembly: GCF_900142335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus paucihalophilus DX253
  ORGANISM  Haladaptatus paucihalophilus DX253
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FRAN00000000.1.
            The Haladaptatus paucihalophilus DX253 whole genome shotgun (WGS)
            project has the project accession NZ_FRAN00000000.  This version of
            the project (01) has the accession number NZ_FRAN01000000, and
            consists of sequences FRAN01000001-FRAN01000014.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900142335.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:15:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,379
            CDSs (total)                      :: 4,324
            Genes (coding)                    :: 4,295
            CDSs (with protein)               :: 4,295
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 8 of 29
            Pseudo Genes (incomplete)         :: 22 of 29
            Pseudo Genes (internal stop)      :: 7 of 29
            Pseudo Genes (multiple problems)  :: 7 of 29
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4283698
                     /organism="Haladaptatus paucihalophilus DX253"
                     /mol_type="genomic DNA"
                     /strain="DX253"
                     /type_material="type strain of Haladaptatus
                     paucihalophilus"
                     /db_xref="taxon:797209"
                     /geo_loc_name="USA:Zodletone Spring, south-western
                     Oklahoma, Zodletone Spring, USA"
                     /lat_lon="35.059529 N 98.470459 W"
WGS         FRAN01000001-FRAN01000014
WGS_SCAFLD  NZ_FRAN01000001-NZ_FRAN01000014
//
LOCUS       NZ_FNHL01000000      3770187 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halogranum gelatinilyticum strain CGMCC 1.10119, whole genome
            shotgun sequencing project.
ACCESSION   NZ_FNHL00000000
VERSION     NZ_FNHL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04487949
            Assembly: GCF_900103715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogranum gelatinilyticum
  ORGANISM  Halogranum gelatinilyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNHL00000000.1.
            The Halogranum gelatinilyticum whole genome shotgun (WGS) project
            has the project accession NZ_FNHL00000000.  This version of the
            project (01) has the accession number NZ_FNHL01000000, and consists
            of sequences FNHL01000001-FNHL01000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900103715.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:13:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,855
            CDSs (total)                      :: 3,794
            Genes (coding)                    :: 3,765
            CDSs (with protein)               :: 3,765
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 26 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770187
                     /organism="Halogranum gelatinilyticum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10119"
                     /type_material="type strain of Halogranum gelatinilyticum"
                     /db_xref="taxon:660521"
WGS         FNHL01000001-FNHL01000011
WGS_SCAFLD  NZ_FNHL01000001-NZ_FNHL01000011
//
LOCUS       NZ_FOTC01000000      4566306 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halogranum rubrum strain CGMCC 1.7738, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOTC00000000
VERSION     NZ_FOTC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04487950
            Assembly: GCF_900114455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogranum rubrum
  ORGANISM  Halogranum rubrum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOTC00000000.1.
            The Halogranum rubrum whole genome shotgun (WGS) project has the
            project accession NZ_FOTC00000000.  This version of the project
            (01) has the accession number NZ_FOTC01000000, and consists of
            sequences FOTC01000001-FOTC01000017.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900114455.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:15:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,610
            CDSs (total)                      :: 4,533
            Genes (coding)                    :: 4,486
            CDSs (with protein)               :: 4,486
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 13 of 47
            Pseudo Genes (incomplete)         :: 40 of 47
            Pseudo Genes (internal stop)      :: 3 of 47
            Pseudo Genes (multiple problems)  :: 9 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4566306
                     /organism="Halogranum rubrum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.7738"
                     /type_material="type strain of Halogranum rubrum"
                     /db_xref="taxon:553466"
WGS         FOTC01000001-FOTC01000017
WGS_SCAFLD  NZ_FOTC01000001-NZ_FOTC01000017
//
LOCUS       NZ_FNOF01000000      3896339 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloarcula vallismortis strain DSM 3756, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNOF00000000
VERSION     NZ_FNOF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05443574
            Assembly: GCF_900106715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula vallismortis
  ORGANISM  Haloarcula vallismortis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNOF00000000.1.
            The Haloarcula vallismortis whole genome shotgun (WGS) project has
            the project accession NZ_FNOF00000000.  This version of the project
            (01) has the accession number NZ_FNOF01000000, and consists of
            sequences FNOF01000001-FNOF01000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900106715.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:13:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,039
            CDSs (total)                      :: 3,962
            Genes (coding)                    :: 3,918
            CDSs (with protein)               :: 3,918
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 2 (5S, 16S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 16 of 44
            Pseudo Genes (incomplete)         :: 30 of 44
            Pseudo Genes (internal stop)      :: 11 of 44
            Pseudo Genes (multiple problems)  :: 10 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3896339
                     /organism="Haloarcula vallismortis"
                     /mol_type="genomic DNA"
                     /strain="DSM 3756"
                     /type_material="type strain of Halobacterium vallismortis"
                     /db_xref="taxon:28442"
                     /geo_loc_name="USA"
                     /lat_lon="36.455556 N 116.866667 W"
WGS         FNOF01000001-FNOF01000055
WGS_SCAFLD  NZ_FNOF01000001-NZ_FNOF01000055
//
LOCUS       NZ_FNFC01000000      3284315 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halovenus aranensis strain IBRC-M10015, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNFC00000000
VERSION     NZ_FNFC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216226
            Assembly: GCF_900100385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus aranensis
  ORGANISM  Halovenus aranensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNFC00000000.1.
            The Halovenus aranensis whole genome shotgun (WGS) project has the
            project accession NZ_FNFC00000000.  This version of the project
            (01) has the accession number NZ_FNFC01000000, and consists of
            sequences FNFC01000001-FNFC01000056.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900100385.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:13:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,404
            CDSs (total)                      :: 3,341
            Genes (coding)                    :: 3,245
            CDSs (with protein)               :: 3,245
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 25 of 96
            Pseudo Genes (incomplete)         :: 73 of 96
            Pseudo Genes (internal stop)      :: 13 of 96
            Pseudo Genes (multiple problems)  :: 13 of 96
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3284315
                     /organism="Halovenus aranensis"
                     /mol_type="genomic DNA"
                     /strain="IBRC-M10015"
                     /db_xref="taxon:890420"
WGS         FNFC01000001-FNFC01000056
WGS_SCAFLD  NZ_FNFC01000001-NZ_FNFC01000056
//
LOCUS       NZ_FOKW01000000      4495104 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natronobacterium haloterrestre strain DSM 13078, whole genome
            shotgun sequencing project.
ACCESSION   NZ_FOKW00000000
VERSION     NZ_FOKW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05444422
            Assembly: GCF_900112205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronobacterium haloterrestre
  ORGANISM  Natronobacterium haloterrestre
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronobacterium.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOKW00000000.1.
            The Natronobacterium haloterrestre whole genome shotgun (WGS)
            project has the project accession NZ_FOKW00000000.  This version of
            the project (01) has the accession number NZ_FOKW01000000, and
            consists of sequences FOKW01000001-FOKW01000031.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900112205.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:13:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,383
            CDSs (total)                      :: 4,315
            Genes (coding)                    :: 4,245
            CDSs (with protein)               :: 4,245
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 25 of 70
            Pseudo Genes (incomplete)         :: 52 of 70
            Pseudo Genes (internal stop)      :: 15 of 70
            Pseudo Genes (multiple problems)  :: 16 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4495104
                     /organism="Natronobacterium haloterrestre"
                     /mol_type="genomic DNA"
                     /strain="DSM 13078"
                     /type_material="type strain of Halobiforma haloterrestris"
                     /db_xref="taxon:148448"
WGS         FOKW01000001-FOKW01000031
WGS_SCAFLD  NZ_FOKW01000001-NZ_FOKW01000031
//
LOCUS       NZ_FOAD01000000      3889283 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax larsenii strain CDM_5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FOAD00000000
VERSION     NZ_FOAD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488691
            Assembly: GCF_900109695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax larsenii
  ORGANISM  Haloferax larsenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOAD00000000.1.
            The Haloferax larsenii whole genome shotgun (WGS) project has the
            project accession NZ_FOAD00000000.  This version of the project
            (01) has the accession number NZ_FOAD01000000, and consists of
            sequences FOAD01000001-FOAD01000024.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900109695.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:14:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,989
            CDSs (total)                      :: 3,929
            Genes (coding)                    :: 3,866
            CDSs (with protein)               :: 3,866
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 20 of 63
            Pseudo Genes (incomplete)         :: 44 of 63
            Pseudo Genes (internal stop)      :: 11 of 63
            Pseudo Genes (multiple problems)  :: 11 of 63
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3889283
                     /organism="Haloferax larsenii"
                     /mol_type="genomic DNA"
                     /strain="CDM_5"
                     /db_xref="taxon:302484"
WGS         FOAD01000001-FOAD01000024
WGS_SCAFLD  NZ_FOAD01000001-NZ_FOAD01000024
//
LOCUS       NZ_FOZK01000000      4249154 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halomicrobium zhouii strain CGMCC 1.10457, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOZK00000000
VERSION     NZ_FOZK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216559
            Assembly: GCF_900114435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicrobium zhouii
  ORGANISM  Halomicrobium zhouii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halomicrobium.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOZK00000000.1.
            The Halomicrobium zhouii whole genome shotgun (WGS) project has the
            project accession NZ_FOZK00000000.  This version of the project
            (01) has the accession number NZ_FOZK01000000, and consists of
            sequences FOZK01000001-FOZK01000006.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900114435.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:16:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,181
            CDSs (total)                      :: 4,112
            Genes (coding)                    :: 4,073
            CDSs (with protein)               :: 4,073
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 8 of 39
            Pseudo Genes (incomplete)         :: 32 of 39
            Pseudo Genes (internal stop)      :: 6 of 39
            Pseudo Genes (multiple problems)  :: 5 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4249154
                     /organism="Halomicrobium zhouii"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10457"
                     /type_material="type strain of Halomicrobium zhouii"
                     /db_xref="taxon:767519"
WGS         FOZK01000001-FOZK01000006
WGS_SCAFLD  NZ_FOZK01000001-NZ_FOZK01000006
//
LOCUS       NZ_FOYS01000000      3616239 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halogeometricum limi strain CGMCC 1.8711, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOYS00000000
VERSION     NZ_FOYS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488124
            Assembly: GCF_900115785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum limi
  ORGANISM  Halogeometricum limi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOYS00000000.1.
            The Halogeometricum limi whole genome shotgun (WGS) project has the
            project accession NZ_FOYS00000000.  This version of the project
            (01) has the accession number NZ_FOYS01000000, and consists of
            sequences FOYS01000001-FOYS01000008.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900115785.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:18:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,684
            CDSs (total)                      :: 3,626
            Genes (coding)                    :: 3,604
            CDSs (with protein)               :: 3,604
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 4 of 22
            Pseudo Genes (incomplete)         :: 19 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            Pseudo Genes (multiple problems)  :: 2 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3616239
                     /organism="Halogeometricum limi"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.8711"
                     /type_material="type strain of Halogeometricum limi"
                     /db_xref="taxon:555875"
WGS         FOYS01000001-FOYS01000008
WGS_SCAFLD  NZ_FOYS01000001-NZ_FOYS01000008
//
LOCUS       NZ_FNPB01000000      3754978 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobellus clavatus strain CGMCC 1.10118, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNPB00000000
VERSION     NZ_FNPB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04487946
            Assembly: GCF_900107195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus clavatus
  ORGANISM  Halobellus clavatus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNPB00000000.1.
            The Halobellus clavatus whole genome shotgun (WGS) project has the
            project accession NZ_FNPB00000000.  This version of the project
            (01) has the accession number NZ_FNPB01000000, and consists of
            sequences FNPB01000001-FNPB01000030.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900107195.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:17:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,751
            CDSs (total)                      :: 3,693
            Genes (coding)                    :: 3,601
            CDSs (with protein)               :: 3,601
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 22 of 92
            Pseudo Genes (incomplete)         :: 79 of 92
            Pseudo Genes (internal stop)      :: 10 of 92
            Pseudo Genes (multiple problems)  :: 16 of 92
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3754978
                     /organism="Halobellus clavatus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10118"
                     /type_material="type strain of Halobellus clavatus"
                     /db_xref="taxon:660517"
WGS         FNPB01000001-FNPB01000030
WGS_SCAFLD  NZ_FNPB01000001-NZ_FNPB01000030
//
LOCUS       NZ_FOCX01000000      4869748 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorientalis persicus strain IBRC-M 10043, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOCX00000000
VERSION     NZ_FOCX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216388
            Assembly: GCF_900110215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis persicus
  ORGANISM  Halorientalis persicus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOCX00000000.1.
            The Halorientalis persicus whole genome shotgun (WGS) project has
            the project accession NZ_FOCX00000000.  This version of the project
            (01) has the accession number NZ_FOCX01000000, and consists of
            sequences FOCX01000001-FOCX01000121.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900110215.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:18:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,184
            CDSs (total)                      :: 5,100
            Genes (coding)                    :: 4,962
            CDSs (with protein)               :: 4,962
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 74
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 32 of 138
            Pseudo Genes (incomplete)         :: 109 of 138
            Pseudo Genes (internal stop)      :: 25 of 138
            Pseudo Genes (multiple problems)  :: 24 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4869748
                     /organism="Halorientalis persicus"
                     /mol_type="genomic DNA"
                     /strain="IBRC-M 10043"
                     /type_material="type strain of Halorientalis persicus"
                     /db_xref="taxon:1367881"
WGS         FOCX01000001-FOCX01000121
WGS_SCAFLD  NZ_FOCX01000001-NZ_FOCX01000121
//
LOCUS       NZ_FODV01000000      5180745 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halogranum amylolyticum strain CGMCC 1.10121, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FODV00000000
VERSION     NZ_FODV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04487948
            Assembly: GCF_900110465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogranum amylolyticum
  ORGANISM  Halogranum amylolyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FODV00000000.1.
            The Halogranum amylolyticum whole genome shotgun (WGS) project has
            the project accession NZ_FODV00000000.  This version of the project
            (01) has the accession number NZ_FODV01000000, and consists of
            sequences FODV01000001-FODV01000061.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900110465.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:17:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,318
            CDSs (total)                      :: 5,252
            Genes (coding)                    :: 5,029
            CDSs (with protein)               :: 5,029
            Genes (RNA)                       :: 66
            rRNAs                             :: 3, 2 (5S, 16S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 223
            CDSs (without protein)            :: 223
            Pseudo Genes (ambiguous residues) :: 0 of 223
            Pseudo Genes (frameshifted)       :: 82 of 223
            Pseudo Genes (incomplete)         :: 181 of 223
            Pseudo Genes (internal stop)      :: 39 of 223
            Pseudo Genes (multiple problems)  :: 68 of 223
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5180745
                     /organism="Halogranum amylolyticum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10121"
                     /type_material="type strain of Halogranum amylolyticum"
                     /db_xref="taxon:660520"
WGS         FODV01000001-FODV01000061
WGS_SCAFLD  NZ_FODV01000001-NZ_FODV01000061
//
LOCUS       NZ_FOYT01000000      4187125 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halogeometricum rufum strain CGMCC 1.7736, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOYT00000000
VERSION     NZ_FOYT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04487947
            Assembly: GCF_900112175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum rufum
  ORGANISM  Halogeometricum rufum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOYT00000000.1.
            The Halogeometricum rufum whole genome shotgun (WGS) project has
            the project accession NZ_FOYT00000000.  This version of the project
            (01) has the accession number NZ_FOYT01000000, and consists of
            sequences FOYT01000001-FOYT01000007.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900112175.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:18:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,260
            CDSs (total)                      :: 4,203
            Genes (coding)                    :: 4,174
            CDSs (with protein)               :: 4,174
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 26 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 4 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4187125
                     /organism="Halogeometricum rufum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.7736"
                     /type_material="type strain of Halogeometricum rufum"
                     /db_xref="taxon:553469"
WGS         FOYT01000001-FOYT01000007
WGS_SCAFLD  NZ_FOYT01000001-NZ_FOYT01000007
//
LOCUS       NZ_FORO01000000      3723468 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natronobacterium gregoryi strain SP2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FORO00000000
VERSION     NZ_FORO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05443661
            Assembly: GCF_900114025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronobacterium gregoryi
  ORGANISM  Natronobacterium gregoryi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronobacterium.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FORO00000000.1.
            The Natronobacterium gregoryi whole genome shotgun (WGS) project
            has the project accession NZ_FORO00000000.  This version of the
            project (01) has the accession number NZ_FORO01000000, and consists
            of sequences FORO01000001-FORO01000086.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900114025.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:09:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,752
            CDSs (total)                      :: 3,698
            Genes (coding)                    :: 3,552
            CDSs (with protein)               :: 3,552
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 46 of 146
            Pseudo Genes (incomplete)         :: 103 of 146
            Pseudo Genes (internal stop)      :: 27 of 146
            Pseudo Genes (multiple problems)  :: 28 of 146
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723468
                     /organism="Natronobacterium gregoryi"
                     /mol_type="genomic DNA"
                     /strain="SP2"
                     /type_material="type strain of Natronobacterium gregoryi"
                     /db_xref="taxon:44930"
                     /lat_lon="1.9446 S 36.2522 E"
WGS         FORO01000001-FORO01000086
WGS_SCAFLD  NZ_FORO01000001-NZ_FORO01000086
//
LOCUS       NZ_FOZS01000000      4108147 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halostagnicola kamekurae strain DSM 22427, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOZS00000000
VERSION     NZ_FOZS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488556
            Assembly: GCF_900116205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostagnicola kamekurae
  ORGANISM  Halostagnicola kamekurae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halostagnicola.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOZS00000000.1.
            The Halostagnicola kamekurae whole genome shotgun (WGS) project has
            the project accession NZ_FOZS00000000.  This version of the project
            (01) has the accession number NZ_FOZS01000000, and consists of
            sequences FOZS01000001-FOZS01000016.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900116205.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:20:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,167
            CDSs (total)                      :: 4,109
            Genes (coding)                    :: 3,935
            CDSs (with protein)               :: 3,935
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 174
            CDSs (without protein)            :: 174
            Pseudo Genes (ambiguous residues) :: 0 of 174
            Pseudo Genes (frameshifted)       :: 95 of 174
            Pseudo Genes (incomplete)         :: 124 of 174
            Pseudo Genes (internal stop)      :: 50 of 174
            Pseudo Genes (multiple problems)  :: 78 of 174
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4108147
                     /organism="Halostagnicola kamekurae"
                     /mol_type="genomic DNA"
                     /strain="DSM 22427"
                     /type_material="type strain of Halostagnicola kamekurae"
                     /db_xref="taxon:619731"
WGS         FOZS01000001-FOZS01000016
WGS_SCAFLD  NZ_FOZS01000001-NZ_FOZS01000016
//
LOCUS       NZ_FOIC01000000      3958000 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natrinema hispanicum strain CDM_6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FOIC00000000
VERSION     NZ_FOIC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488694
            Assembly: GCF_900111485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema hispanicum
  ORGANISM  Natrinema hispanicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOIC00000000.1.
            The Natrinema hispanicum whole genome shotgun (WGS) project has the
            project accession NZ_FOIC00000000.  This version of the project
            (01) has the accession number NZ_FOIC01000000, and consists of
            sequences FOIC01000001-FOIC01000092.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900111485.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:11:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,103
            CDSs (total)                      :: 4,044
            Genes (coding)                    :: 3,896
            CDSs (with protein)               :: 3,896
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 36 of 148
            Pseudo Genes (incomplete)         :: 128 of 148
            Pseudo Genes (internal stop)      :: 16 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3958000
                     /organism="Natrinema hispanicum"
                     /mol_type="genomic DNA"
                     /strain="CDM_6"
                     /db_xref="taxon:392421"
WGS         FOIC01000001-FOIC01000092
WGS_SCAFLD  NZ_FOIC01000001-NZ_FOIC01000092
//
LOCUS       NZ_FNWL01000000      3782335 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natronorubrum sediminis strain CGMCC 1.8981, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNWL00000000
VERSION     NZ_FNWL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04487967
            Assembly: GCF_900108095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum sediminis
  ORGANISM  Natronorubrum sediminis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNWL00000000.1.
            The Natronorubrum sediminis whole genome shotgun (WGS) project has
            the project accession NZ_FNWL00000000.  This version of the project
            (01) has the accession number NZ_FNWL01000000, and consists of
            sequences FNWL01000001-FNWL01000006.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900108095.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:12:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,664
            CDSs (total)                      :: 3,601
            Genes (coding)                    :: 3,560
            CDSs (with protein)               :: 3,560
            Genes (RNA)                       :: 63
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 18 of 41
            Pseudo Genes (incomplete)         :: 26 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 11 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782335
                     /organism="Natronorubrum sediminis"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.8981"
                     /type_material="type strain of Natronorubrum sediminis"
                     /db_xref="taxon:640943"
WGS         FNWL01000001-FNWL01000006
WGS_SCAFLD  NZ_FNWL01000001-NZ_FNWL01000006
//
LOCUS       NZ_FNFE01000000      4641793 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natronorubrum texcoconense strain B4,CECT 8067,JCM 17497, whole
            genome shotgun sequencing project.
ACCESSION   NZ_FNFE00000000
VERSION     NZ_FNFE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04515672
            Assembly: GCF_900100335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum texcoconense
  ORGANISM  Natronorubrum texcoconense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNFE00000000.1.
            The Natronorubrum texcoconense whole genome shotgun (WGS) project
            has the project accession NZ_FNFE00000000.  This version of the
            project (01) has the accession number NZ_FNFE01000000, and consists
            of sequences FNFE01000001-FNFE01000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900100335.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:12:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,543
            CDSs (total)                      :: 4,489
            Genes (coding)                    :: 4,446
            CDSs (with protein)               :: 4,446
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 3 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 17 of 43
            Pseudo Genes (incomplete)         :: 29 of 43
            Pseudo Genes (internal stop)      :: 8 of 43
            Pseudo Genes (multiple problems)  :: 11 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4641793
                     /organism="Natronorubrum texcoconense"
                     /mol_type="genomic DNA"
                     /strain="B4,CECT 8067,JCM 17497"
                     /db_xref="taxon:1095776"
WGS         FNFE01000001-FNFE01000011
WGS_SCAFLD  NZ_FNFE01000001-NZ_FNFE01000011
//
LOCUS       NZ_FOIS01000000      4269929 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natrinema salifodinae strain CGMCC 1.12284, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOIS00000000
VERSION     NZ_FOIS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216285
            Assembly: GCF_900110455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema salifodinae
  ORGANISM  Natrinema salifodinae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOIS00000000.1.
            The Natrinema salifodinae whole genome shotgun (WGS) project has
            the project accession NZ_FOIS00000000.  This version of the project
            (01) has the accession number NZ_FOIS01000000, and consists of
            sequences FOIS01000001-FOIS01000008.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900110455.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:16:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,147
            CDSs (total)                      :: 4,089
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 3 (5S, 16S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 26 of 54
            Pseudo Genes (incomplete)         :: 31 of 54
            Pseudo Genes (internal stop)      :: 13 of 54
            Pseudo Genes (multiple problems)  :: 13 of 54
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4269929
                     /organism="Natrinema salifodinae"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12284"
                     /type_material="type strain of Halopiger salifodinae"
                     /db_xref="taxon:1202768"
WGS         FOIS01000001-FOIS01000008
WGS_SCAFLD  NZ_FOIS01000001-NZ_FOIS01000008
//
LOCUS       NZ_FNLC01000000      4009788 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natronobacterium texcoconense strain DSM 24767, whole genome
            shotgun sequencing project.
ACCESSION   NZ_FNLC00000000
VERSION     NZ_FNLC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04489842
            Assembly: GCF_900104065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronobacterium texcoconense
  ORGANISM  Natronobacterium texcoconense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronobacterium.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNLC00000000.1.
            The Natronobacterium texcoconense whole genome shotgun (WGS)
            project has the project accession NZ_FNLC00000000.  This version of
            the project (01) has the accession number NZ_FNLC01000000, and
            consists of sequences FNLC01000001-FNLC01000009.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900104065.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:10:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,112
            CDSs (total)                      :: 4,058
            Genes (coding)                    :: 4,023
            CDSs (with protein)               :: 4,023
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 16 of 35
            Pseudo Genes (incomplete)         :: 24 of 35
            Pseudo Genes (internal stop)      :: 6 of 35
            Pseudo Genes (multiple problems)  :: 9 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4009788
                     /organism="Natronobacterium texcoconense"
                     /mol_type="genomic DNA"
                     /strain="DSM 24767"
                     /type_material="type strain of Natronobacterium
                     texcoconense"
                     /db_xref="taxon:1095778"
WGS         FNLC01000001-FNLC01000009
WGS_SCAFLD  NZ_FNLC01000001-NZ_FNLC01000009
//
LOCUS       NZ_LKBG01000000      1778901 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Acidiplasma aeolicum strain VT, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LKBG00000000
VERSION     NZ_LKBG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04087216
            Assembly: GCF_001402945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidiplasma aeolicum
  ORGANISM  Acidiplasma aeolicum
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1778901)
  AUTHORS   Bulaev,A.G. and Kanygina,A.V.
  TITLE     Heavy metals and arsenic resistance mechanisms in polyextremophilic
            archaea of the family Ferroplasmaceae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1778901)
  AUTHORS   Bulaev,A.G. and Kanygina,A.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-SEP-2015) Bioinformatics, RIPCM, 1a Malaya
            Pirogovskaya, Moscow 119435, Russian Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LKBG00000000.1.
            The Acidiplasma aeolicum whole genome shotgun (WGS) project has the
            project accession NZ_LKBG00000000.  This version of the project
            (01) has the accession number NZ_LKBG01000000, and consists of
            sequences LKBG01000001-LKBG01000296.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: SPAdes v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001402945.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 05:29:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,925
            CDSs (total)                      :: 1,874
            Genes (coding)                    :: 1,804
            CDSs (with protein)               :: 1,804
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 6 of 70
            Pseudo Genes (incomplete)         :: 66 of 70
            Pseudo Genes (internal stop)      :: 3 of 70
            Pseudo Genes (multiple problems)  :: 5 of 70
            CRISPR Arrays                     :: 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778901
                     /organism="Acidiplasma aeolicum"
                     /mol_type="genomic DNA"
                     /strain="VT"
                     /isolation_source="hydrothermal pool (sand/gravel)"
                     /type_material="type strain of Acidiplasma aeolicum"
                     /db_xref="taxon:507754"
                     /geo_loc_name="Italy: Island Vulcano"
                     /collection_date="2009"
WGS         LKBG01000001-LKBG01000296
WGS_SCAFLD  NZ_LKBG01000001-NZ_LKBG01000296
//
LOCUS       NZ_LWMU01000000      2140433 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter oralis strain DSM 7256, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LWMU00000000
VERSION     NZ_LWMU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04867341
            Assembly: GCF_001639275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter oralis
  ORGANISM  Methanobrevibacter oralis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2140433)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Genome sequence of Methanobrevibacter oralis DSM 7256
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2140433)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2016) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisenachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWMU00000000.1.
            The Methanobrevibacter oralis whole genome shotgun (WGS) project
            has the project accession NZ_LWMU00000000.  This version of the
            project (01) has the accession number NZ_LWMU01000000, and consists
            of sequences LWMU01000001-LWMU01000136.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.0
            Genome Coverage       :: 179x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001639275.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 08:55:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,054
            Genes (coding)                    :: 2,008
            CDSs (with protein)               :: 2,008
            Genes (RNA)                       :: 39
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 8 of 46
            Pseudo Genes (incomplete)         :: 40 of 46
            Pseudo Genes (internal stop)      :: 5 of 46
            Pseudo Genes (multiple problems)  :: 5 of 46
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140433
                     /organism="Methanobrevibacter oralis"
                     /mol_type="genomic DNA"
                     /strain="DSM 7256"
                     /isolation_source="oral cavity"
                     /host="Homo sapiens"
                     /culture_collection="DSM:7256"
                     /type_material="type strain of Methanobrevibacter oralis"
                     /db_xref="taxon:66851"
WGS         LWMU01000001-LWMU01000136
WGS_SCAFLD  NZ_LWMU01000001-NZ_LWMU01000136
//
LOCUS       NZ_FOFD01000000      4852629 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natrinema salaciae strain DSM 25055, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOFD00000000
VERSION     NZ_FOFD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04489841
            Assembly: GCF_900110865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema salaciae
  ORGANISM  Natrinema salaciae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOFD00000000.1.
            The Natrinema salaciae whole genome shotgun (WGS) project has the
            project accession NZ_FOFD00000000.  This version of the project
            (01) has the accession number NZ_FOFD01000000, and consists of
            sequences FOFD01000001-FOFD01000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900110865.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,825
            CDSs (total)                      :: 4,763
            Genes (coding)                    :: 4,681
            CDSs (with protein)               :: 4,681
            Genes (RNA)                       :: 62
            rRNAs                             :: 4, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 1, 4 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 28 of 82
            Pseudo Genes (incomplete)         :: 65 of 82
            Pseudo Genes (internal stop)      :: 10 of 82
            Pseudo Genes (multiple problems)  :: 17 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852629
                     /organism="Natrinema salaciae"
                     /mol_type="genomic DNA"
                     /strain="DSM 25055"
                     /type_material="type strain of Natrinema salaciae"
                     /db_xref="taxon:1186196"
WGS         FOFD01000001-FOFD01000011
WGS_SCAFLD  NZ_FOFD01000001-NZ_FOFD01000011
//
LOCUS       NZ_LWMT01000000      2606143 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter filiformis strain DSM 11501, whole genome
            shotgun sequencing project.
ACCESSION   NZ_LWMT00000000
VERSION     NZ_LWMT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04867340
            Assembly: GCF_001639265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter filiformis
  ORGANISM  Methanobrevibacter filiformis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2606143)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Genome sequence of Methanobrevibacter filiformis DSM 11501
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2606143)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2016) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisenachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWMT00000000.1.
            The Methanobrevibacter filiformis whole genome shotgun (WGS)
            project has the project accession NZ_LWMT00000000.  This version of
            the project (01) has the accession number NZ_LWMT01000000, and
            consists of sequences LWMT01000001-LWMT01000295.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.0
            Genome Coverage       :: 125x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001639265.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 08:57:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,057
            CDSs (total)                      :: 2,014
            Genes (coding)                    :: 1,964
            CDSs (with protein)               :: 1,964
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 4 of 50
            Pseudo Genes (incomplete)         :: 47 of 50
            Pseudo Genes (internal stop)      :: 3 of 50
            Pseudo Genes (multiple problems)  :: 3 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606143
                     /organism="Methanobrevibacter filiformis"
                     /mol_type="genomic DNA"
                     /strain="DSM 11501"
                     /isolation_source="termite hindguts"
                     /culture_collection="DSM:11501"
                     /type_material="type strain of Methanobrevibacter
                     filiformis"
                     /db_xref="taxon:55758"
WGS         LWMT01000001-LWMT01000295
WGS_SCAFLD  NZ_LWMT01000001-NZ_LWMT01000295
//
LOCUS       NZ_JRWK01000000      1729155 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosphaera sp. WGK6, whole genome shotgun sequencing project.
ACCESSION   NZ_JRWK00000000
VERSION     NZ_JRWK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03108761
            Assembly: GCF_001729965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosphaera sp. WGK6
  ORGANISM  Methanosphaera sp. WGK6
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1729155)
  AUTHORS   Hoedt,E.C., Cuiv,P.O., Evans,P.N., Smith,W.J., McSweeney,C.S.,
            Denman,S.E. and Morrison,M.
  TITLE     Differences down-under: alcohol-fueled methanogenesis by archaea
            present in Australian macropodids
  JOURNAL   ISME J 10 (10), 2376-2388 (2016)
   PUBMED   27022996
REFERENCE   2  (bases 1 to 1729155)
  AUTHORS   Hoedt,E.C., Cuiv,P.O., Evans,P., Denman,S.E., Smith,W. and
            Morrison,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2014) School of Chemistry and Molecular
            Biosciences, University of Queensland, Carmody Rd, Brisbane, QLD
            4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JRWK00000000.1.
            The Methanosphaera sp. WGK6 whole genome shotgun (WGS) project has
            the project accession NZ_JRWK00000000.  This version of the project
            (01) has the accession number NZ_JRWK01000000, and consists of
            sequences JRWK01000001-JRWK01000037.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2011
            Assembly Method        :: Velvet v. SEPTEMBER-2011
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 68.0x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001729965.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:01:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,654
            CDSs (total)                      :: 1,604
            Genes (coding)                    :: 1,592
            CDSs (with protein)               :: 1,592
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 4 of 12
            Pseudo Genes (incomplete)         :: 8 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729155
                     /organism="Methanosphaera sp. WGK6"
                     /mol_type="genomic DNA"
                     /strain="WGK6"
                     /host="western grey kangaroo"
                     /db_xref="taxon:1561964"
                     /geo_loc_name="Australia: Perth"
                     /collection_date="2008"
WGS         JRWK01000001-JRWK01000037
WGS_SCAFLD  NZ_JRWK01000001-NZ_JRWK01000037
//
LOCUS       NZ_FNCA01000000      2945371 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanolobus vulcani strain PL 12/M, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNCA00000000
VERSION     NZ_FNCA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488589
            Assembly: GCF_900100715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolobus vulcani
  ORGANISM  Methanolobus vulcani
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNCA00000000.1.
            The Methanolobus vulcani whole genome shotgun (WGS) project has the
            project accession NZ_FNCA00000000.  This version of the project
            (01) has the accession number NZ_FNCA01000000, and consists of
            sequences FNCA01000001-FNCA01000020.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900100715.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:02:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,886
            CDSs (total)                      :: 2,829
            Genes (coding)                    :: 2,814
            CDSs (with protein)               :: 2,814
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 1 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 2 of 15
            Pseudo Genes (incomplete)         :: 8 of 15
            Pseudo Genes (internal stop)      :: 7 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2945371
                     /organism="Methanolobus vulcani"
                     /mol_type="genomic DNA"
                     /strain="PL 12/M"
                     /type_material="type strain of Methanolobus vulcani"
                     /db_xref="taxon:38026"
WGS         FNCA01000001-FNCA01000020
WGS_SCAFLD  NZ_FNCA01000001-NZ_FNCA01000020
//
LOCUS       NZ_BCNX01000000      2223235 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanoculleus thermophilus strain CR-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BCNX00000000
VERSION     NZ_BCNX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00044722
            Assembly: GCF_001571405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus thermophilus
  ORGANISM  Methanoculleus thermophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1
  AUTHORS   Narihiro,T., Kusada,H., Yoneda,Y. and Tamaki,H.
  TITLE     Draft Genome Sequences of Methanoculleus horonobensis Strain JCM
            15517, Methanoculleus thermophilus Strain DSM 2373, and
            Methanofollis ethanolicus Strain JCM 15103, Hydrogenotrophic
            Methanogens Belonging to the Family Methanomicrobiaceae
  JOURNAL   Genome Announc 4 (2), e00199-16 (2016)
   PUBMED   27034500
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223235)
  AUTHORS   Narihiro,T., Tamaki,H., Tamazawa,S. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2016) Contact:Takashi Narihiro National Institute
            of Advanced Industrial Science and Technology (AIST), Bioproduction
            Research Institute; Central 6, Higashi 1-1-1, Tsukuba, Ibaraki
            305-8566, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BCNX00000000.1.
            The Methanoculleus thermophilus whole genome shotgun (WGS) project
            has the project accession NZ_BCNX00000000.  This version of the
            project (01) has the accession number NZ_BCNX01000000, and consists
            of sequences BCNX01000001-BCNX01000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes Genome Assembler v. 3.5.0
            Genome Coverage       :: 1456x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001571405.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 08:47:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,309
            CDSs (total)                      :: 2,248
            Genes (coding)                    :: 2,231
            CDSs (with protein)               :: 2,231
            Genes (RNA)                       :: 61
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 2 of 17
            Pseudo Genes (incomplete)         :: 16 of 17
            Pseudo Genes (internal stop)      :: 0 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223235
                     /organism="Methanoculleus thermophilus"
                     /mol_type="genomic DNA"
                     /strain="CR-1"
                     /culture_collection="DSM:2373"
                     /type_material="type strain of Methanoculleus
                     thermophilus"
                     /db_xref="taxon:2200"
WGS         BCNX01000001-BCNX01000023
WGS_SCAFLD  NZ_BCNX01000001-NZ_BCNX01000023
//
LOCUS       NZ_MCNQ01000000      1885778 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Methanohalophilus sp. 2-GBenrich, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MCNQ00000000
VERSION     NZ_MCNQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05172267
            Assembly: GCF_001726015.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanohalophilus sp. 2-GBenrich (gas well metagenome)
  ORGANISM  Methanohalophilus sp. 2-GBenrich
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1885778)
  AUTHORS   Wolfe,R., Daly,R. and Wrighton,K.
  TITLE     Methanohalophilus GBenrich Annotated
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1885778)
  AUTHORS   Wolfe,R., Daly,R. and Wrighton,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-AUG-2016) Department of Microbiology, The Ohio State
            University, 484 W. 12th Ave, Columbus, OH 43210, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MCNQ00000000.1.
            The Methanohalophilus sp. 2-GBenrich whole genome shotgun (WGS)
            project has the project accession NZ_MCNQ00000000.  This version of
            the project (01) has the accession number NZ_MCNQ01000000, and
            consists of sequences MCNQ01000001-MCNQ01000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: idba_ud v. 1.1.0
            Genome Coverage       :: 1738.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001726015.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:58:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,068
            CDSs (total)                      :: 2,018
            Genes (coding)                    :: 1,978
            CDSs (with protein)               :: 1,978
            Genes (RNA)                       :: 50
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 11 of 40
            Pseudo Genes (incomplete)         :: 25 of 40
            Pseudo Genes (internal stop)      :: 14 of 40
            Pseudo Genes (multiple problems)  :: 8 of 40
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885778
                     /organism="Methanohalophilus sp. 2-GBenrich"
                     /mol_type="genomic DNA"
                     /isolate="2-GBenrich"
                     /isolation_source="Hydraulically fractured well fluid"
                     /db_xref="taxon:1884871"
                     /environmental_sample
                     /geo_loc_name="USA: Ohio"
                     /lat_lon="40.06 N 81.10000000 W"
                     /collection_date="2014"
                     /metagenome_source="gas well metagenome"
                     /metagenomic
WGS         MCNQ01000001-MCNQ01000023
WGS_SCAFLD  NZ_MCNQ01000001-NZ_MCNQ01000023
//
LOCUS       NZ_BCNY01000000      2446106 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanoculleus horonobensis strain JCM 15517, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BCNY00000000
VERSION     NZ_BCNY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00044723
            Assembly: GCF_001602375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus horonobensis
  ORGANISM  Methanoculleus horonobensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1
  AUTHORS   Narihiro,T., Kusada,H., Yoneda,Y. and Tamaki,H.
  TITLE     Draft Genome Sequences of Methanoculleus horonobensis Strain JCM
            15517, Methanoculleus thermophilus Strain DSM 2373, and
            Methanofollis ethanolicus Strain JCM 15103, Hydrogenotrophic
            Methanogens Belonging to the Family Methanomicrobiaceae
  JOURNAL   Genome Announc 4 (2), e00199-16 (2016)
   PUBMED   27034500
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446106)
  AUTHORS   Narihiro,T., Tamaki,H., Tamazawa,S. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2016) Contact:Takashi Narihiro National Institute
            of Advanced Industrial Science and Technology (AIST), Bioproduction
            Research Institute; Central 6, Higashi 1-1-1, Tsukuba, Ibaraki
            305-8566, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BCNY00000000.1.
            The Methanoculleus horonobensis whole genome shotgun (WGS) project
            has the project accession NZ_BCNY00000000.  This version of the
            project (01) has the accession number NZ_BCNY01000000, and consists
            of sequences BCNY01000001-BCNY01000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes Genome Assembler v. 3.5.0
            Genome Coverage       :: 1105x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001602375.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:50:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,508
            CDSs (total)                      :: 2,450
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 8 of 9
            Pseudo Genes (internal stop)      :: 1 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446106
                     /organism="Methanoculleus horonobensis"
                     /mol_type="genomic DNA"
                     /strain="JCM 15517"
                     /culture_collection="JCM:15517"
                     /type_material="type strain of Methanoculleus
                     horonobensis"
                     /db_xref="taxon:528314"
WGS         BCNY01000001-BCNY01000015
WGS_SCAFLD  NZ_BCNY01000001-NZ_BCNY01000015
//
LOCUS       NZ_MAIF01000000      1556477 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosphaera sp. A6, whole genome shotgun sequencing project.
ACCESSION   NZ_MAIF00000000
VERSION     NZ_MAIF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05231872
            Assembly: GCF_001729395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosphaera sp. A6
  ORGANISM  Methanosphaera sp. A6
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1556477)
  AUTHORS   Woodcroft,B.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2016) School of Chemistry & Molecular
            Biosciences, Australian Centre for Ecogenomics, The University of
            Queensland, Molecular Biosciences Building, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MAIF00000000.1.
            The Methanosphaera sp. A6 whole genome shotgun (WGS) project has
            the project accession NZ_MAIF00000000.  This version of the project
            (01) has the accession number NZ_MAIF01000000, and consists of
            sequences MAIF01000001-MAIF01000167.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001729395.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:57:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,500
            CDSs (total)                      :: 1,464
            Genes (coding)                    :: 1,451
            CDSs (with protein)               :: 1,451
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 2 of 13
            Pseudo Genes (incomplete)         :: 12 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556477
                     /organism="Methanosphaera sp. A6"
                     /mol_type="genomic DNA"
                     /strain="A6"
                     /db_xref="taxon:1860157"
                     /geo_loc_name="Australia"
                     /collection_date="2014"
WGS         MAIF01000001-MAIF01000167
WGS_SCAFLD  NZ_MAIF01000001-NZ_MAIF01000167
//
LOCUS       NZ_LZPL01000000      1809869 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter sp. A27, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LZPL00000000
VERSION     NZ_LZPL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05224565
            Assembly: GCF_001729385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter sp. A27
  ORGANISM  Methanobrevibacter sp. A27
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1809869)
  AUTHORS   Woodcroft,B.J.
  TITLE     Validation of picogram- and femtogram-input DNA libraries for
            microscale metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1809869)
  AUTHORS   Woodcroft,B.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2016) School of Chemistry & Molecular
            Biosciences, Australian Centre for Ecogenomics, The University of
            Queensland, Molecular Biosciences Building, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LZPL00000000.1.
            The Methanobrevibacter sp. A27 whole genome shotgun (WGS) project
            has the project accession NZ_LZPL00000000.  This version of the
            project (01) has the accession number NZ_LZPL01000000, and consists
            of sequences LZPL01000001-LZPL01000058.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001729385.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:59:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,849
            CDSs (total)                      :: 1,814
            Genes (coding)                    :: 1,801
            CDSs (with protein)               :: 1,801
            Genes (RNA)                       :: 35
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 3 of 13
            Pseudo Genes (incomplete)         :: 8 of 13
            Pseudo Genes (internal stop)      :: 3 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809869
                     /organism="Methanobrevibacter sp. A27"
                     /mol_type="genomic DNA"
                     /strain="A27"
                     /db_xref="taxon:1860099"
                     /geo_loc_name="Australia"
                     /collection_date="2014"
WGS         LZPL01000001-LZPL01000058
WGS_SCAFLD  NZ_LZPL01000001-NZ_LZPL01000058
//
LOCUS       NZ_MAFX01000000      1894170 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Methanohalophilus sp. DAL1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MAFX00000000
VERSION     NZ_MAFX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05258748
            Assembly: GCF_001683555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanohalophilus sp. DAL1 (aquatic metagenome)
  ORGANISM  Methanohalophilus sp. DAL1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1894170)
  AUTHORS   Lipus,D. and Bibby,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUN-2016) Civil and Environmental Engineering,
            University of Pittsburgh, 3700 O'Hara Street, Pittsburgh, PA 15261,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MAFX00000000.1.
            The Methanohalophilus sp. DAL1 whole genome shotgun (WGS) project
            has the project accession NZ_MAFX00000000.  This version of the
            project (01) has the accession number NZ_MAFX01000000, and consists
            of sequences MAFX01000001-MAFX01000058.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.5.1; SPAdes v. 3.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.77x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001683555.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 09:58:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,118
            CDSs (total)                      :: 2,067
            Genes (coding)                    :: 2,016
            CDSs (with protein)               :: 2,016
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 10 of 51
            Pseudo Genes (incomplete)         :: 37 of 51
            Pseudo Genes (internal stop)      :: 13 of 51
            Pseudo Genes (multiple problems)  :: 8 of 51
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894170
                     /organism="Methanohalophilus sp. DAL1"
                     /mol_type="genomic DNA"
                     /isolate="DAL1"
                     /isolation_source="Marcellus Shale hydraulic fracturing
                     produced water"
                     /db_xref="taxon:1864608"
                     /environmental_sample
                     /geo_loc_name="USA: Pennsylvania"
                     /lat_lon="39.77262554 N 80.32915592 W"
                     /collection_date="2014-06-12"
                     /metagenome_source="aquatic metagenome"
                     /metagenomic
WGS         MAFX01000001-MAFX01000058
WGS_SCAFLD  NZ_MAFX01000001-NZ_MAFX01000058
//
LOCUS       NZ_FNMU01000000      2026562 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanohalophilus halophilus strain Z-7982, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNMU00000000
VERSION     NZ_FNMU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04515625
            Assembly: GCF_900106905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus halophilus
  ORGANISM  Methanohalophilus halophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNMU00000000.1.
            The Methanohalophilus halophilus whole genome shotgun (WGS) project
            has the project accession NZ_FNMU00000000.  This version of the
            project (01) has the accession number NZ_FNMU01000000, and consists
            of sequences FNMU01000001-FNMU01000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900106905.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:00:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,115
            CDSs (total)                      :: 2,051
            Genes (coding)                    :: 2,031
            CDSs (with protein)               :: 2,031
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 4, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 1 of 20
            Pseudo Genes (incomplete)         :: 10 of 20
            Pseudo Genes (internal stop)      :: 9 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026562
                     /organism="Methanohalophilus halophilus"
                     /mol_type="genomic DNA"
                     /strain="Z-7982"
                     /type_material="type strain of Methanococcus halophilus"
                     /db_xref="taxon:2177"
WGS         FNMU01000001-FNMU01000010
WGS_SCAFLD  NZ_FNMU01000001-NZ_FNMU01000010
//
LOCUS       NZ_FOAK01000000      1864477 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter gottschalkii strain DSM 11978, whole genome
            shotgun sequencing project.
ACCESSION   NZ_FOAK00000000
VERSION     NZ_FOAK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05216439
            Assembly: GCF_900109595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter gottschalkii
  ORGANISM  Methanobrevibacter gottschalkii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOAK00000000.1.
            The Methanobrevibacter gottschalkii whole genome shotgun (WGS)
            project has the project accession NZ_FOAK00000000.  This version of
            the project (01) has the accession number NZ_FOAK01000000, and
            consists of sequences FOAK01000001-FOAK01000020.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900109595.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:01:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,935
            CDSs (total)                      :: 1,891
            Genes (coding)                    :: 1,862
            CDSs (with protein)               :: 1,862
            Genes (RNA)                       :: 44
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 14 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            Pseudo Genes (multiple problems)  :: 5 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864477
                     /organism="Methanobrevibacter gottschalkii"
                     /mol_type="genomic DNA"
                     /strain="DSM 11978"
                     /db_xref="taxon:190974"
WGS         FOAK01000001-FOAK01000020
WGS_SCAFLD  NZ_FOAK01000001-NZ_FOAK01000020
//
LOCUS       NZ_FOHQ01000000      2313353 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanococcoides vulcani strain SLH 33, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOHQ00000000
VERSION     NZ_FOHQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488587
            Assembly: GCF_900111645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides vulcani
  ORGANISM  Methanococcoides vulcani
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOHQ00000000.1.
            The Methanococcoides vulcani whole genome shotgun (WGS) project has
            the project accession NZ_FOHQ00000000.  This version of the project
            (01) has the accession number NZ_FOHQ01000000, and consists of
            sequences FOHQ01000001-FOHQ01000015.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900111645.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:04:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,351
            CDSs (total)                      :: 2,287
            Genes (coding)                    :: 2,235
            CDSs (with protein)               :: 2,235
            Genes (RNA)                       :: 64
            rRNAs                             :: 4, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 9 of 52
            Pseudo Genes (incomplete)         :: 37 of 52
            Pseudo Genes (internal stop)      :: 14 of 52
            Pseudo Genes (multiple problems)  :: 8 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313353
                     /organism="Methanococcoides vulcani"
                     /mol_type="genomic DNA"
                     /strain="SLH 33"
                     /type_material="type strain of Methanococcoides vulcani"
                     /db_xref="taxon:1353158"
WGS         FOHQ01000001-FOHQ01000015
WGS_SCAFLD  NZ_FOHQ01000001-NZ_FOHQ01000015
//
LOCUS       NZ_LZPK01000000      4275905 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanosarcina sp. A14, whole genome shotgun sequencing project.
ACCESSION   NZ_LZPK00000000
VERSION     NZ_LZPK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05219188
            Assembly: GCF_001729375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. A14
  ORGANISM  Methanosarcina sp. A14
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4275905)
  AUTHORS   Woodcroft,B.J.
  TITLE     Validation of picogram- and femtogram-input DNA libraries for
            microscale metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4275905)
  AUTHORS   Woodcroft,B.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2016) School of Chemistry & Molecular
            Biosciences, Australian Centre for Ecogenomics, The University of
            Queensland, Molecular Biosciences Building, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LZPK00000000.1.
            The Methanosarcina sp. A14 whole genome shotgun (WGS) project has
            the project accession NZ_LZPK00000000.  This version of the project
            (01) has the accession number NZ_LZPK01000000, and consists of
            sequences LZPK01000001-LZPK01000390.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001729375.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:04:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,720
            CDSs (total)                      :: 3,670
            Genes (coding)                    :: 3,487
            CDSs (with protein)               :: 3,487
            Genes (RNA)                       :: 50
            rRNAs                             :: 1 (23S)
            complete rRNAs                    :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 68 of 183
            Pseudo Genes (incomplete)         :: 147 of 183
            Pseudo Genes (internal stop)      :: 45 of 183
            Pseudo Genes (multiple problems)  :: 60 of 183
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4275905
                     /organism="Methanosarcina sp. A14"
                     /mol_type="genomic DNA"
                     /strain="A14"
                     /db_xref="taxon:1860098"
                     /geo_loc_name="Australia"
                     /collection_date="2015"
WGS         LZPK01000001-LZPK01000390
WGS_SCAFLD  NZ_LZPK01000001-NZ_LZPK01000390
//
LOCUS       NZ_JWTK01000000      1989414 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanohalophilus portucalensis FDF-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JWTK00000000
VERSION     NZ_JWTK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03100365
            Assembly: GCF_001888095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus portucalensis FDF-1
  ORGANISM  Methanohalophilus portucalensis FDF-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1989414)
  AUTHORS   Lai,M.-C. and Lai,S.-J.
  TITLE     The genome sequence of Methanohalophilus portucalensis strain FDF1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1989414)
  AUTHORS   Lai,M.-C. and Lai,S.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-DEC-2014) Life Sciences, National Chung Hsing
            University, 250 Kuo-Kuang Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWTK00000000.1.
            The Methanohalophilus portucalensis FDF-1 whole genome shotgun
            (WGS) project has the project accession NZ_JWTK00000000.  This
            version of the project (01) has the accession number
            NZ_JWTK01000000, and consists of sequences
            JWTK01000001-JWTK01000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC NGS Cell v. 4.3
            Genome Coverage       :: 238x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001888095.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:03:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,083
            CDSs (total)                      :: 2,031
            Genes (coding)                    :: 2,014
            CDSs (with protein)               :: 2,014
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 1 of 17
            Pseudo Genes (incomplete)         :: 8 of 17
            Pseudo Genes (internal stop)      :: 8 of 17
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989414
                     /organism="Methanohalophilus portucalensis FDF-1"
                     /mol_type="genomic DNA"
                     /strain="FDF-1"
                     /isolation_source="sediment"
                     /type_material="type strain of Methanohalophilus
                     portucalensis"
                     /db_xref="taxon:523843"
                     /geo_loc_name="Portugal"
                     /collection_date="1985"
WGS         JWTK01000001-JWTK01000015
WGS_SCAFLD  NZ_JWTK01000001-NZ_JWTK01000015
//
LOCUS       NZ_FOTL01000000      2122096 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter olleyae strain DSM 16632, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOTL00000000
VERSION     NZ_FOTL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02910297
            Assembly: GCF_900114585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter olleyae
  ORGANISM  Methanobrevibacter olleyae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOTL00000000.1.
            The Methanobrevibacter olleyae whole genome shotgun (WGS) project
            has the project accession NZ_FOTL00000000.  This version of the
            project (01) has the accession number NZ_FOTL01000000, and consists
            of sequences FOTL01000001-FOTL01000049.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900114585.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:03:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,790
            CDSs (with protein)               :: 1,790
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 21 of 48
            Pseudo Genes (incomplete)         :: 44 of 48
            Pseudo Genes (internal stop)      :: 2 of 48
            Pseudo Genes (multiple problems)  :: 18 of 48
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122096
                     /organism="Methanobrevibacter olleyae"
                     /mol_type="genomic DNA"
                     /strain="DSM 16632"
                     /type_material="type strain of Methanobrevibacter olleyae"
                     /db_xref="taxon:294671"
                     /geo_loc_name="Australia: Perth"
WGS         FOTL01000001-FOTL01000049
WGS_SCAFLD  NZ_FOTL01000001-NZ_FOTL01000049
//
LOCUS       NZ_FOUJ01000000      3105899 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanolobus profundi strain Mob M, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FOUJ00000000
VERSION     NZ_FOUJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488696
            Assembly: GCF_900114835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolobus profundi
  ORGANISM  Methanolobus profundi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOUJ00000000.1.
            The Methanolobus profundi whole genome shotgun (WGS) project has
            the project accession NZ_FOUJ00000000.  This version of the project
            (01) has the accession number NZ_FOUJ01000000, and consists of
            sequences FOUJ01000001-FOUJ01000018.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900114835.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:08:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,972
            CDSs (total)                      :: 2,912
            Genes (coding)                    :: 2,898
            CDSs (with protein)               :: 2,898
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 1 of 14
            Pseudo Genes (incomplete)         :: 8 of 14
            Pseudo Genes (internal stop)      :: 5 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3105899
                     /organism="Methanolobus profundi"
                     /mol_type="genomic DNA"
                     /strain="Mob M"
                     /type_material="type strain of Methanolobus profundi"
                     /db_xref="taxon:487685"
WGS         FOUJ01000001-FOUJ01000018
WGS_SCAFLD  NZ_FOUJ01000001-NZ_FOUJ01000018
//
LOCUS       NZ_MAIE01000000      1712240 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter sp. A54, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MAIE00000000
VERSION     NZ_MAIE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05231871
            Assembly: GCF_001729455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter sp. A54
  ORGANISM  Methanobrevibacter sp. A54
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1712240)
  AUTHORS   Woodcroft,B.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2016) School of Chemistry & Molecular
            Biosciences, Australian Centre for Ecogenomics, The University of
            Queensland, Molecular Biosciences Building, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MAIE00000000.1.
            The Methanobrevibacter sp. A54 whole genome shotgun (WGS) project
            has the project accession NZ_MAIE00000000.  This version of the
            project (01) has the accession number NZ_MAIE01000000, and consists
            of sequences MAIE01000001-MAIE01000112.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001729455.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:04:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,665
            CDSs (with protein)               :: 1,665
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 6 of 34
            Pseudo Genes (incomplete)         :: 26 of 34
            Pseudo Genes (internal stop)      :: 3 of 34
            Pseudo Genes (multiple problems)  :: 1 of 34
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712240
                     /organism="Methanobrevibacter sp. A54"
                     /mol_type="genomic DNA"
                     /strain="A54"
                     /db_xref="taxon:1860156"
                     /geo_loc_name="Australia"
                     /collection_date="2014"
WGS         MAIE01000001-MAIE01000112
WGS_SCAFLD  NZ_MAIE01000001-NZ_MAIE01000112
//
LOCUS       NZ_LWMV01000000      2414608 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter curvatus strain DSM 11111, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LWMV00000000
VERSION     NZ_LWMV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04867343
            Assembly: GCF_001639295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter curvatus
  ORGANISM  Methanobrevibacter curvatus
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2414608)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Genome sequence of Methanobrevibacter curvatus DSM 11111
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2414608)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2016) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisenachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWMV00000000.1.
            The Methanobrevibacter curvatus whole genome shotgun (WGS) project
            has the project accession NZ_LWMV00000000.  This version of the
            project (01) has the accession number NZ_LWMV01000000, and consists
            of sequences LWMV01000001-LWMV01000232.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.0
            Genome Coverage       :: 236x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001639295.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:59:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,075
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,970
            CDSs (with protein)               :: 1,970
            Genes (RNA)                       :: 39
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 4 of 66
            Pseudo Genes (incomplete)         :: 59 of 66
            Pseudo Genes (internal stop)      :: 5 of 66
            Pseudo Genes (multiple problems)  :: 2 of 66
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414608
                     /organism="Methanobrevibacter curvatus"
                     /mol_type="genomic DNA"
                     /strain="DSM 11111"
                     /isolation_source="hindguts"
                     /host="Reticulitermes flavipes"
                     /culture_collection="DSM:11111"
                     /type_material="type strain of Methanobrevibacter
                     curvatus"
                     /db_xref="taxon:49547"
WGS         LWMV01000001-LWMV01000232
WGS_SCAFLD  NZ_LWMV01000001-NZ_LWMV01000232
//
LOCUS       NZ_LOEP01000000      3977535 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haloferax sp. Q22, whole genome shotgun sequencing project.
ACCESSION   NZ_LOEP00000000
VERSION     NZ_LOEP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04018175
            Assembly: GCF_001482285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Q22
  ORGANISM  Haloferax sp. Q22
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3977535)
  AUTHORS   Chen,S.X. and Xiang,H.
  TITLE     Genome sequence of Haloferax sp. strain Q22
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3977535)
  AUTHORS   Chen,S.X. and Xiang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2015) Institute of Microbiology, Chinese Academy
            of Sciences, No. 1 West Beichen Road, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LOEP00000000.1.
            The Haloferax sp. Q22 whole genome shotgun (WGS) project has the
            project accession NZ_LOEP00000000.  This version of the project
            (01) has the accession number NZ_LOEP01000000, and consists of
            sequences LOEP01000001-LOEP01000056.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2015
            Assembly Method        :: Velvet v. May-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 417.9x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001482285.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 10:57:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,105
            CDSs (total)                      :: 4,043
            Genes (coding)                    :: 3,972
            CDSs (with protein)               :: 3,972
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 25 of 71
            Pseudo Genes (incomplete)         :: 44 of 71
            Pseudo Genes (internal stop)      :: 10 of 71
            Pseudo Genes (multiple problems)  :: 7 of 71
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3977535
                     /organism="Haloferax sp. Q22"
                     /mol_type="genomic DNA"
                     /strain="Q22"
                     /isolation_source="salt mine"
                     /db_xref="taxon:1526048"
                     /geo_loc_name="China: Yunnan"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing,Chen"
WGS         LOEP01000001-LOEP01000056
WGS_SCAFLD  NZ_LOEP01000001-NZ_LOEP01000056
//
LOCUS       NZ_FTNP01000000      3830922 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natronorubrum daqingense strain CGMCC 1.8909, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTNP00000000
VERSION     NZ_FTNP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05421809
            Assembly: GCF_900156445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum daqingense
  ORGANISM  Natronorubrum daqingense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTNP00000000.1.
            The Natronorubrum daqingense whole genome shotgun (WGS) project has
            the project accession NZ_FTNP00000000.  This version of the project
            (01) has the accession number NZ_FTNP01000000, and consists of
            sequences FTNP01000001-FTNP01000014.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900156445.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 12:16:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,785
            CDSs (total)                      :: 3,734
            Genes (coding)                    :: 3,707
            CDSs (with protein)               :: 3,707
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 10 of 27
            Pseudo Genes (incomplete)         :: 21 of 27
            Pseudo Genes (internal stop)      :: 6 of 27
            Pseudo Genes (multiple problems)  :: 8 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3830922
                     /organism="Natronorubrum daqingense"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.8909"
                     /type_material="type strain of Haloterrigena daqingensis"
                     /db_xref="taxon:588898"
WGS         FTNP01000001-FTNP01000014
WGS_SCAFLD  NZ_FTNP01000001-NZ_FTNP01000014
//
LOCUS       NZ_LWLN01000000      3980616 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natrinema saccharevitans strain AB14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LWLN00000000
VERSION     NZ_LWLN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04868784
            Assembly: GCF_001953745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema saccharevitans
  ORGANISM  Natrinema saccharevitans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3980616)
  AUTHORS   Chen,S.-C. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2016) Department of Life Sciences, National Chung
            Hsing University, 250 Kuo Kuang Rd, Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWLN00000000.1.
            The Natrinema saccharevitans whole genome shotgun (WGS) project has
            the project accession NZ_LWLN00000000.  This version of the project
            (01) has the accession number NZ_LWLN01000000, and consists of
            sequences LWLN01000001-LWLN01000003.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAR-2016
            Assembly Method        :: HGAP3 v. Mar-2016
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 170.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001953745.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 12:15:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,099
            CDSs (total)                      :: 4,029
            Genes (coding)                    :: 3,899
            CDSs (with protein)               :: 3,899
            Genes (RNA)                       :: 70
            rRNAs                             :: 7, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 63 of 130
            Pseudo Genes (incomplete)         :: 87 of 130
            Pseudo Genes (internal stop)      :: 30 of 130
            Pseudo Genes (multiple problems)  :: 45 of 130
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3980616
                     /organism="Natrinema saccharevitans"
                     /mol_type="genomic DNA"
                     /strain="AB14"
                     /isolation_source="salt lake"
                     /type_material="type strain of Haloterrigena
                     saccharevitans"
                     /db_xref="taxon:301967"
                     /geo_loc_name="China: Aibi salt lake, Xin-Jiang"
WGS         LWLN01000001-LWLN01000003
WGS_SCAFLD  NZ_LWLN01000001-NZ_LWLN01000003
//
LOCUS       NZ_FTNR01000000      4208956 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Natronorubrum thiooxidans strain HArc-T, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTNR00000000
VERSION     NZ_FTNR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05421752
            Assembly: GCF_900156475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum thiooxidans
  ORGANISM  Natronorubrum thiooxidans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTNR00000000.1.
            The Natronorubrum thiooxidans whole genome shotgun (WGS) project
            has the project accession NZ_FTNR00000000.  This version of the
            project (01) has the accession number NZ_FTNR01000000, and consists
            of sequences FTNR01000001-FTNR01000062.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900156475.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 12:13:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,206
            CDSs (total)                      :: 4,144
            Genes (coding)                    :: 4,026
            CDSs (with protein)               :: 4,026
            Genes (RNA)                       :: 62
            rRNAs                             :: 8, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 23S)
            partial rRNAs                     :: 3, 1 (5S, 16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 33 of 118
            Pseudo Genes (incomplete)         :: 87 of 118
            Pseudo Genes (internal stop)      :: 20 of 118
            Pseudo Genes (multiple problems)  :: 21 of 118
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4208956
                     /organism="Natronorubrum thiooxidans"
                     /mol_type="genomic DNA"
                     /strain="HArc-T"
                     /db_xref="taxon:308853"
                     /geo_loc_name="Russia: Kulunda Steppe, Altai"
                     /lat_lon="52.2667 N 79.5000 E"
WGS         FTNR01000001-FTNR01000062
WGS_SCAFLD  NZ_FTNR01000001-NZ_FTNR01000062
//
LOCUS       NZ_FMID01000000      2649157 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanoculleus chikugoensis isolate L21-II-0, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FMID00000000
VERSION     NZ_FMID00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4384483
            Assembly: GCF_900095385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus chikugoensis
  ORGANISM  Methanoculleus chikugoensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1
  AUTHORS   Wibberg,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2016) CEBITEC, Genome Research of Industrial
            Microorganisms (GRIM), Universitaetsstrasse 27, 33615, NRW, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FMID00000000.1.
            The Methanoculleus chikugoensis whole genome shotgun (WGS) project
            has the project accession NZ_FMID00000000.  This version of the
            project (01) has the accession number NZ_FMID01000000, and consists
            of sequences FMID01000001-FMID01000070.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900095385.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 12:00:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,744
            CDSs (total)                      :: 2,692
            Genes (coding)                    :: 2,657
            CDSs (with protein)               :: 2,657
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 1 of 35
            Pseudo Genes (incomplete)         :: 33 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 1 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649157
                     /organism="Methanoculleus chikugoensis"
                     /mol_type="genomic DNA"
                     /isolate="L21-II-0"
                     /isolation_source="biogas sludge"
                     /db_xref="taxon:118126"
                     /geo_loc_name="Germany"
                     /collection_date="2014"
WGS         FMID01000001-FMID01000070
WGS_SCAFLD  NZ_FMID01000001-NZ_FMID01000070
//
LOCUS       NZ_BDJH01000000      2574365 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halosegnis longus strain CBA1134, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BDJH00000000
VERSION     NZ_BDJH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00064366
            Assembly: GCF_001950595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosegnis longus
  ORGANISM  Halosegnis longus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequence of Natronomonas sp. CBA1134
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2574365)
  AUTHORS   Roh,S.W. and Song,H.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2016) Contact:Seong Woon Roh Korea Basic Science
            Institute, Biological Disaster Analysis Group; 169-148 Gwahak-ro,
            Yuseong-gu, Daejeon 34133, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BDJH00000000.1.
            The Halosegnis longus whole genome shotgun (WGS) project has the
            project accession NZ_BDJH00000000.  This version of the project
            (01) has the accession number NZ_BDJH01000000, and consists of
            sequences BDJH01000001-BDJH01000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: PacBio SMRT Analysis v. 2.3.0
            Genome Coverage       :: 319.23x
            Sequencing Technology :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001950595.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 12:05:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,785
            CDSs (total)                      :: 2,735
            Genes (coding)                    :: 2,706
            CDSs (with protein)               :: 2,706
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 21 of 29
            Pseudo Genes (internal stop)      :: 7 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574365
                     /organism="Halosegnis longus"
                     /mol_type="genomic DNA"
                     /strain="CBA1134"
                     /isolation_source="Solar salt"
                     /db_xref="taxon:2216012"
WGS         BDJH01000001-BDJH01000002
WGS_SCAFLD  NZ_BDJH01000001-NZ_BDJH01000002
//
LOCUS       NZ_FTNO01000000      4671642 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Haladaptatus litoreus strain CGMCC 1.7737, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTNO00000000
VERSION     NZ_FTNO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05421858
            Assembly: GCF_900156425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus litoreus
  ORGANISM  Haladaptatus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTNO00000000.1.
            The Haladaptatus litoreus whole genome shotgun (WGS) project has
            the project accession NZ_FTNO00000000.  This version of the project
            (01) has the accession number NZ_FTNO01000000, and consists of
            sequences FTNO01000001-FTNO01000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900156425.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 12:24:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,930
            CDSs (total)                      :: 4,873
            Genes (coding)                    :: 4,772
            CDSs (with protein)               :: 4,772
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 26 of 101
            Pseudo Genes (incomplete)         :: 77 of 101
            Pseudo Genes (internal stop)      :: 32 of 101
            Pseudo Genes (multiple problems)  :: 27 of 101
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4671642
                     /organism="Haladaptatus litoreus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.7737"
                     /type_material="type strain of Haladaptatus litoreus"
                     /db_xref="taxon:553468"
WGS         FTNO01000001-FTNO01000011
WGS_SCAFLD  NZ_FTNO01000001-NZ_FTNO01000011
//
LOCUS       NZ_MVRD01000000      2851395 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Methanoregula sp. PtaU1.Bin006, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MVRD00000000
VERSION     NZ_MVRD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04534938
            Assembly: GCF_002067645.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. PtaU1.Bin006 (bioreactor metagenome)
  ORGANISM  Methanoregula sp. PtaU1.Bin006
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2851395)
  AUTHORS   Nobu,M.K., Narihiro,T., Liu,M., Kuroda,K., Mei,R. and Liu,W.T.
  TITLE     Thermodynamically diverse syntrophic aromatic compound catabolism
  JOURNAL   Environ Microbiol 19 (11), 4576-4586 (2017)
   PUBMED   28892300
REFERENCE   2  (bases 1 to 2851395)
  AUTHORS   Nobu,M.K., Narihiro,T., Liu,M., Kuroda,K., Mei,R. and Liu,W.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2017) Civil and Environmental Engineering,
            University of Illinois, 205 N. Mathews Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MVRD00000000.1.
            The Methanoregula sp. PtaU1.Bin006 whole genome shotgun (WGS)
            project has the project accession NZ_MVRD00000000.  This version of
            the project (01) has the accession number NZ_MVRD01000000, and
            consists of sequences MVRD01000001-MVRD01000040.
            Source DNA available from corresponding author Professor Wen-Tso
            Liu at the University of Illinois 205 N. Mathews Ave, Urbana, IL
            61801 USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.6.2
            Genome Coverage       :: 457.649x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002067645.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 18:06:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,866
            CDSs (total)                      :: 2,820
            Genes (coding)                    :: 2,795
            CDSs (with protein)               :: 2,795
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 3 of 25
            Pseudo Genes (incomplete)         :: 21 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851395
                     /organism="Methanoregula sp. PtaU1.Bin006"
                     /mol_type="genomic DNA"
                     /isolate="PtaU1.Bin006"
                     /isolation_source="Lab-scale methanogenic bioreactor
                     treating purified terephthalic acid process wastewater"
                     /db_xref="taxon:1811681"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.06 N 88.13 W"
                     /collection_date="2014"
                     /metagenome_source="bioreactor metagenome"
                     /metagenomic
WGS         MVRD01000001-MVRD01000040
WGS_SCAFLD  NZ_MVRD01000001-NZ_MVRD01000040
//
LOCUS       NZ_MVQB01000000      2904573 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Methanoregula sp. PtaB.Bin085, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MVQB00000000
VERSION     NZ_MVQB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04534937
            Assembly: GCF_002067035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. PtaB.Bin085 (bioreactor metagenome)
  ORGANISM  Methanoregula sp. PtaB.Bin085
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2904573)
  AUTHORS   Nobu,M.K., Narihiro,T., Liu,M., Kuroda,K., Mei,R. and Liu,W.T.
  TITLE     Thermodynamically diverse syntrophic aromatic compound catabolism
  JOURNAL   Environ Microbiol 19 (11), 4576-4586 (2017)
   PUBMED   28892300
REFERENCE   2  (bases 1 to 2904573)
  AUTHORS   Nobu,M.K., Narihiro,T., Liu,M., Kuroda,K., Mei,R. and Liu,W.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2017) Civil and Environmental Engineering,
            University of Illinois, 205 N. Mathews Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MVQB00000000.1.
            The Methanoregula sp. PtaB.Bin085 whole genome shotgun (WGS)
            project has the project accession NZ_MVQB00000000.  This version of
            the project (01) has the accession number NZ_MVQB01000000, and
            consists of sequences MVQB01000001-MVQB01000063.
            Source DNA available from corresponding author Professor Wen-Tso
            Liu at the University of Illinois 205 N. Mathews Ave, Urbana, IL
            61801 USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.6.2
            Genome Coverage       :: 24.3242x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002067035.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 18:22:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,948
            CDSs (total)                      :: 2,894
            Genes (coding)                    :: 2,868
            CDSs (with protein)               :: 2,868
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 2 of 26
            Pseudo Genes (incomplete)         :: 24 of 26
            Pseudo Genes (internal stop)      :: 1 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2904573
                     /organism="Methanoregula sp. PtaB.Bin085"
                     /mol_type="genomic DNA"
                     /isolate="PtaB.Bin085"
                     /isolation_source="Full-scale methanogenic bioreactor
                     treating purified terephthalic acid process wastewater"
                     /db_xref="taxon:1811680"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.06 N 88.13 W"
                     /collection_date="2014"
                     /metagenome_source="bioreactor metagenome"
                     /metagenomic
WGS         MVQB01000001-MVQB01000063
WGS_SCAFLD  NZ_MVQB01000001-NZ_MVQB01000063
//
LOCUS       NZ_MVQX01000000      2098238 bp    DNA     linear   ENV 22-OCT-2024
DEFINITION  MAG: Methanomethylovorans sp. PtaU1.Bin093, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MVQX00000000
VERSION     NZ_MVQX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04534928
            Assembly: GCF_002067275.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanomethylovorans sp. PtaU1.Bin093 (bioreactor metagenome)
  ORGANISM  Methanomethylovorans sp. PtaU1.Bin093
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2098238)
  AUTHORS   Nobu,M.K., Narihiro,T., Liu,M., Kuroda,K., Mei,R. and Liu,W.T.
  TITLE     Thermodynamically diverse syntrophic aromatic compound catabolism
  JOURNAL   Environ Microbiol 19 (11), 4576-4586 (2017)
   PUBMED   28892300
REFERENCE   2  (bases 1 to 2098238)
  AUTHORS   Nobu,M.K., Narihiro,T., Liu,M., Kuroda,K., Mei,R. and Liu,W.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2017) Civil and Environmental Engineering,
            University of Illinois, 205 N. Mathews Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MVQX00000000.1.
            The Methanomethylovorans sp. PtaU1.Bin093 whole genome shotgun
            (WGS) project has the project accession NZ_MVQX00000000.  This
            version of the project (01) has the accession number
            NZ_MVQX01000000, and consists of sequences
            MVQX01000001-MVQX01000100.
            Source DNA available from corresponding author Professor Wen-Tso
            Liu at the University of Illinois 205 N. Mathews Ave, Urbana, IL
            61801 USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.6.2
            Genome Coverage       :: 25.5893x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002067275.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 18:33:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,152
            CDSs (total)                      :: 2,112
            Genes (coding)                    :: 2,081
            CDSs (with protein)               :: 2,081
            Genes (RNA)                       :: 40
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 25 of 31
            Pseudo Genes (internal stop)      :: 8 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098238
                     /organism="Methanomethylovorans sp. PtaU1.Bin093"
                     /mol_type="genomic DNA"
                     /isolate="PtaU1.Bin093"
                     /isolation_source="Lab-scale methanogenic bioreactor
                     treating purified terephthalic acid process wastewater"
                     /db_xref="taxon:1811679"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="40.06 N 88.13 W"
                     /collection_date="2014"
                     /metagenome_source="bioreactor metagenome"
                     /metagenomic
WGS         MVQX01000001-MVQX01000100
WGS_SCAFLD  NZ_MVQX01000001-NZ_MVQX01000100
//
LOCUS       NZ_JXMW01000000      2445031 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 strain DH1,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JXMW00000000
VERSION     NZ_JXMW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03267482
            Assembly: GCF_002072215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter arboriphilus JCM 13429 = DSM 1125
  ORGANISM  Methanobrevibacter arboriphilus JCM 13429 = DSM 1125
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2445031)
  AUTHORS   Poehlein,A., Thauer,R.K., Seedorf,H. and Daniel,R.
  TITLE     Genome sequence of Methanobrevibacter arboriphilicus DH1, DSM1125
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2445031)
  AUTHORS   Poehlein,A., Thauer,R.K., Seedorf,H. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2014) Genomic and Applied Microbiology,
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JXMW00000000.1.
            The Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 whole
            genome shotgun (WGS) project has the project accession
            NZ_JXMW00000000.  This version of the project (01) has the
            accession number NZ_JXMW01000000, and consists of sequences
            JXMW01000001-JXMW01000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Mira v. 3.4
            Genome Coverage       :: 92.85x
            Sequencing Technology :: 454; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002072215.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 18:40:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,007
            CDSs (total)                      :: 1,961
            Genes (coding)                    :: 1,944
            CDSs (with protein)               :: 1,944
            Genes (RNA)                       :: 46
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 12 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445031
                     /organism="Methanobrevibacter arboriphilus JCM 13429 = DSM
                     1125"
                     /mol_type="genomic DNA"
                     /strain="DH1"
                     /isolation_source="wetwood"
                     /culture_collection="DSM:1125"
                     /type_material="type strain of Methanobacterium
                     arbophilicum"
                     /db_xref="taxon:1300164"
                     /geo_loc_name="USA: Madison"
WGS         JXMW01000001-JXMW01000040
WGS_SCAFLD  NZ_JXMW01000001-NZ_JXMW01000040
//
LOCUS       NZ_FXBN01000000      2088894 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanohalophilus portucalensis FDF-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FXBN00000000
VERSION     NZ_FXBN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06264941
            Assembly: GCF_900177455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus portucalensis FDF-1
  ORGANISM  Methanohalophilus portucalensis FDF-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FXBN00000000.1.
            The Methanohalophilus portucalensis FDF-1 whole genome shotgun
            (WGS) project has the project accession NZ_FXBN00000000.  This
            version of the project (01) has the accession number
            NZ_FXBN01000000, and consists of sequences
            FXBN01000001-FXBN01000009.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900177455.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:10:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,173
            CDSs (total)                      :: 2,116
            Genes (coding)                    :: 2,091
            CDSs (with protein)               :: 2,091
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 15 of 25
            Pseudo Genes (internal stop)      :: 10 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088894
                     /organism="Methanohalophilus portucalensis FDF-1"
                     /mol_type="genomic DNA"
                     /strain="FDF-1"
                     /type_material="type strain of Methanohalophilus
                     portucalensis"
                     /db_xref="taxon:523843"
WGS         FXBN01000001-FXBN01000009
WGS_SCAFLD  NZ_FXBN01000001-NZ_FXBN01000009
//
LOCUS       NZ_NEDJ01000000      3603550 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum ezzemoulense DSM 17463, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NEDJ00000000
VERSION     NZ_NEDJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06765717
            Assembly: GCF_002114285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense DSM 17463
  ORGANISM  Halorubrum ezzemoulense DSM 17463
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3603550)
  AUTHORS   De La Haba,R., Sanchez-Porro,C., Infante-Dominguez,C. and
            Ventosa,A.
  TITLE     MLSA of the genus Halorubrum
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3603550)
  AUTHORS   De La Haba,R., Sanchez-Porro,C., Infante-Dominguez,C. and
            Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-APR-2017) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NEDJ00000000.1.
            The Halorubrum ezzemoulense DSM 17463 whole genome shotgun (WGS)
            project has the project accession NZ_NEDJ00000000.  This version of
            the project (01) has the accession number NZ_NEDJ01000000, and
            consists of sequences NEDJ01000001-NEDJ01000155.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Spade v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.9x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002114285.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:14:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,688
            CDSs (total)                      :: 3,618
            Genes (coding)                    :: 3,436
            CDSs (with protein)               :: 3,436
            Genes (RNA)                       :: 70
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 35 of 182
            Pseudo Genes (incomplete)         :: 140 of 182
            Pseudo Genes (internal stop)      :: 36 of 182
            Pseudo Genes (multiple problems)  :: 25 of 182
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603550
                     /organism="Halorubrum ezzemoulense DSM 17463"
                     /mol_type="genomic DNA"
                     /strain="DSM 17463"
                     /isolation_source="water"
                     /culture_collection="DSM:17463"
                     /type_material="type strain of Halorubrum ezzemoulense"
                     /db_xref="taxon:1121945"
                     /geo_loc_name="Algeria"
                     /collection_date="2005"
WGS         NEDJ01000001-NEDJ01000155
WGS_SCAFLD  NZ_NEDJ01000001-NZ_NEDJ01000155
//
LOCUS       NZ_CEMO01000000      3226454 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobacterium hubeiense strain JI20-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CEMO00000000
VERSION     NZ_CEMO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3268805
            Assembly: GCF_900003515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium hubeiense
  ORGANISM  Halobacterium hubeiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Jaakkola,T.Salla.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2015) UH, Department of Biosciences and Institute
            of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University
            of, Helsinki, Finland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEMO00000000.1.
            The Halobacterium hubeiense whole genome shotgun (WGS) project has
            the project accession NZ_CEMO00000000.  This version of the project
            (01) has the accession number NZ_CEMO01000000, and consists of
            sequences CEMO01000001-CEMO01000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900003515.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:25:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,562
            CDSs (total)                      :: 3,511
            Genes (coding)                    :: 3,412
            CDSs (with protein)               :: 3,412
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 18 of 99
            Pseudo Genes (incomplete)         :: 83 of 99
            Pseudo Genes (internal stop)      :: 9 of 99
            Pseudo Genes (multiple problems)  :: 11 of 99
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226454
                     /organism="Halobacterium hubeiense"
                     /mol_type="genomic DNA"
                     /strain="JI20-2"
                     /db_xref="taxon:1407499"
WGS         CEMO01000001-CEMO01000010
WGS_SCAFLD  NZ_CEMO01000001-NZ_CEMO01000010
//
LOCUS       NZ_CEML01000000      3227778 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobacterium hubeiense strain JI20-4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CEML00000000
VERSION     NZ_CEML00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3268807
            Assembly: GCF_900003575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium hubeiense
  ORGANISM  Halobacterium hubeiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Jaakkola,T.Salla.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2015) UH, Department of Biosciences and Institute
            of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University
            of, Helsinki, Finland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEML00000000.1.
            The Halobacterium hubeiense whole genome shotgun (WGS) project has
            the project accession NZ_CEML00000000.  This version of the project
            (01) has the accession number NZ_CEML01000000, and consists of
            sequences CEML01000001-CEML01000018.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900003575.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:27:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,545
            CDSs (total)                      :: 3,493
            Genes (coding)                    :: 3,395
            CDSs (with protein)               :: 3,395
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 18 of 98
            Pseudo Genes (incomplete)         :: 83 of 98
            Pseudo Genes (internal stop)      :: 9 of 98
            Pseudo Genes (multiple problems)  :: 12 of 98
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227778
                     /organism="Halobacterium hubeiense"
                     /mol_type="genomic DNA"
                     /strain="JI20-4"
                     /db_xref="taxon:1407499"
WGS         CEML01000001-CEML01000018
WGS_SCAFLD  NZ_CEML01000001-NZ_CEML01000018
//
LOCUS       NZ_NEWJ01000000      3145903 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum sp. SD683, whole genome shotgun sequencing project.
ACCESSION   NZ_NEWJ00000000
VERSION     NZ_NEWJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06761387
            Assembly: GCF_002135045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SD683
  ORGANISM  Halorubrum sp. SD683
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3145903)
  AUTHORS   De La Haba,R., Sanchez-Porro,C., Infante-Dominguez,C., Corral,P.
            and Ventosa,A.
  TITLE     MLSA of the genus Halorubrum
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3145903)
  AUTHORS   De La Haba,R., Sanchez-Porro,C., Infante-Dominguez,C., Corral,P.
            and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2017) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NEWJ00000000.1.
            The Halorubrum sp. SD683 whole genome shotgun (WGS) project has the
            project accession NZ_NEWJ00000000.  This version of the project
            (01) has the accession number NZ_NEWJ01000000, and consists of
            sequences NEWJ01000001-NEWJ01000137.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24.95x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002135045.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:23:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,306
            CDSs (total)                      :: 3,241
            Genes (coding)                    :: 3,114
            CDSs (with protein)               :: 3,114
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 19 of 127
            Pseudo Genes (incomplete)         :: 105 of 127
            Pseudo Genes (internal stop)      :: 14 of 127
            Pseudo Genes (multiple problems)  :: 11 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3145903
                     /organism="Halorubrum sp. SD683"
                     /mol_type="genomic DNA"
                     /strain="SD683"
                     /isolation_source="solar saltern surface water"
                     /db_xref="taxon:1855873"
                     /geo_loc_name="Namibia"
                     /lat_lon="22 S 17 E"
                     /collection_date="2012"
WGS         NEWJ01000001-NEWJ01000137
WGS_SCAFLD  NZ_NEWJ01000001-NZ_NEWJ01000137
//
LOCUS       NZ_CEMN01000000      3227747 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobacterium hubeiense strain JI20-3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CEMN00000000
VERSION     NZ_CEMN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3268806
            Assembly: GCF_900003505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium hubeiense
  ORGANISM  Halobacterium hubeiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Jaakkola,T.Salla.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2015) UH, Department of Biosciences and Institute
            of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University
            of, Helsinki, Finland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEMN00000000.1.
            The Halobacterium hubeiense whole genome shotgun (WGS) project has
            the project accession NZ_CEMN00000000.  This version of the project
            (01) has the accession number NZ_CEMN01000000, and consists of
            sequences CEMN01000001-CEMN01000016.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900003505.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:25:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,543
            CDSs (total)                      :: 3,492
            Genes (coding)                    :: 3,400
            CDSs (with protein)               :: 3,400
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 17 of 92
            Pseudo Genes (incomplete)         :: 77 of 92
            Pseudo Genes (internal stop)      :: 9 of 92
            Pseudo Genes (multiple problems)  :: 11 of 92
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227747
                     /organism="Halobacterium hubeiense"
                     /mol_type="genomic DNA"
                     /strain="JI20-3"
                     /db_xref="taxon:1407499"
WGS         CEMN01000001-CEMN01000016
WGS_SCAFLD  NZ_CEMN01000001-NZ_CEMN01000016
//
LOCUS       NZ_MRZU01000000      1513137 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Methanonatronarchaeum thermophilum strain AMET1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_MRZU00000000
VERSION     NZ_MRZU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05770049
            Assembly: GCF_002153915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanonatronarchaeum thermophilum
  ORGANISM  Methanonatronarchaeum thermophilum
            Archaea; Methanobacteriati; Methanobacteriota;
            Methanonatronarchaeia; Methanonatronarchaeales;
            Methanonatronarchaeaceae; Methanonatronarchaeum.
REFERENCE   1  (bases 1 to 1513137)
  AUTHORS   Sorokin,D.Y., Makarova,K.S., Abbas,B., Ferrer,M. and Golyshin,P.N.
  TITLE     Discovery of methanogenic haloarchaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1513137)
  AUTHORS   Sorokin,D.Y., Makarova,K.S., Abbas,B., Ferrer,M. and Golyshin,P.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2016) Research Centre of Biotechnology,
            Winogradsky Institute of Microbiology, 33/2 Leninskii Prospect,
            Moscow 119071, Russian Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MRZU00000000.1.
            The Methanonatronarchaeum thermophilum whole genome shotgun (WGS)
            project has the project accession NZ_MRZU00000000.  This version of
            the project (01) has the accession number NZ_MRZU01000000, and
            consists of sequences MRZU01000001-MRZU01000008.
            Bacteria and source DNA available from Dimitry Y. Sorokin,
            Winogradsky Institute of Microbiology, Centre for Biotechnology,
            Russian Academy of Sciences, Moscow, Russia.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2014
            Assembly Method       :: HGAP v. MAY-2014; CLC Genomics Workbench
                                     v. MAY-2014
            Genome Coverage       :: 428.0x
            Sequencing Technology :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002153915.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:30:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,565
            CDSs (total)                      :: 1,520
            Genes (coding)                    :: 1,507
            CDSs (with protein)               :: 1,507
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 9 of 13
            Pseudo Genes (internal stop)      :: 4 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513137
                     /organism="Methanonatronarchaeum thermophilum"
                     /mol_type="genomic DNA"
                     /strain="AMET1"
                     /isolation_source="hypersaline soda lakes"
                     /type_material="type strain of Methanonatronarchaeum
                     thermophilum"
                     /db_xref="taxon:1927129"
                     /geo_loc_name="Russia: Altai region"
                     /lat_lon="51.39 N 79.50 E"
                     /altitude="163 m"
                     /collection_date="2013-07-10"
WGS         MRZU01000001-MRZU01000008
WGS_SCAFLD  NZ_MRZU01000001-NZ_MRZU01000008
//
LOCUS       NZ_CEMQ01000000      3229115 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobacterium hubeiense strain JI20-7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CEMQ00000000
VERSION     NZ_CEMQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3268810
            Assembly: GCF_900003525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium hubeiense
  ORGANISM  Halobacterium hubeiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Jaakkola,T.Salla.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2015) UH, Department of Biosciences and Institute
            of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University
            of, Helsinki, Finland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEMQ00000000.1.
            The Halobacterium hubeiense whole genome shotgun (WGS) project has
            the project accession NZ_CEMQ00000000.  This version of the project
            (01) has the accession number NZ_CEMQ01000000, and consists of
            sequences CEMQ01000001-CEMQ01000012.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900003525.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:29:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,557
            CDSs (total)                      :: 3,505
            Genes (coding)                    :: 3,401
            CDSs (with protein)               :: 3,401
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 23 of 104
            Pseudo Genes (incomplete)         :: 83 of 104
            Pseudo Genes (internal stop)      :: 9 of 104
            Pseudo Genes (multiple problems)  :: 11 of 104
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229115
                     /organism="Halobacterium hubeiense"
                     /mol_type="genomic DNA"
                     /strain="JI20-7"
                     /db_xref="taxon:1407499"
WGS         CEMQ01000001-CEMQ01000012
WGS_SCAFLD  NZ_CEMQ01000001-NZ_CEMQ01000012
//
LOCUS       NZ_NEWI01000000      3307998 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum sp. SD612, whole genome shotgun sequencing project.
ACCESSION   NZ_NEWI00000000
VERSION     NZ_NEWI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06761329
            Assembly: GCF_002135005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SD612
  ORGANISM  Halorubrum sp. SD612
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3307998)
  AUTHORS   De La Haba,R., Sanchez-Porro,C., Infante-Dominguez,C., Papke,R.,
            Corral,P. and Ventosa,A.
  TITLE     MLSA of the genus Halorubrum
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3307998)
  AUTHORS   De La Haba,R., Sanchez-Porro,C., Infante-Dominguez,C., Papke,R.,
            Corral,P. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2017) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NEWI00000000.1.
            The Halorubrum sp. SD612 whole genome shotgun (WGS) project has the
            project accession NZ_NEWI00000000.  This version of the project
            (01) has the accession number NZ_NEWI01000000, and consists of
            sequences NEWI01000001-NEWI01000402.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.65x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002135005.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:30:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,644
            CDSs (total)                      :: 3,587
            Genes (coding)                    :: 3,332
            CDSs (with protein)               :: 3,332
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 255
            CDSs (without protein)            :: 255
            Pseudo Genes (ambiguous residues) :: 0 of 255
            Pseudo Genes (frameshifted)       :: 28 of 255
            Pseudo Genes (incomplete)         :: 224 of 255
            Pseudo Genes (internal stop)      :: 16 of 255
            Pseudo Genes (multiple problems)  :: 12 of 255
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307998
                     /organism="Halorubrum sp. SD612"
                     /mol_type="genomic DNA"
                     /strain="SD612"
                     /isolation_source="solar saltern surface water"
                     /db_xref="taxon:1855863"
                     /geo_loc_name="Namibia"
                     /lat_lon="22 S 17 E"
                     /collection_date="2012"
WGS         NEWI01000001-NEWI01000402
WGS_SCAFLD  NZ_NEWI01000001-NZ_NEWI01000402
//
LOCUS       NZ_MKFG01000000      3633750 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halorubrum lacusprofundi strain DL18, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MKFG00000000
VERSION     NZ_MKFG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05822533
            Assembly: GCF_002215305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum lacusprofundi
  ORGANISM  Halorubrum lacusprofundi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3633750)
  AUTHORS   Erdmann,S., Tschitschko,B. and Cavicchioli,R.
  TITLE     A plasmid goes viral
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3633750)
  AUTHORS   Erdmann,S., Tschitschko,B. and Cavicchioli,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2016) BABS, University of NSW, Chancellery Walk,
            Kensington 2033, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MKFG00000000.1.
            The Halorubrum lacusprofundi whole genome shotgun (WGS) project has
            the project accession NZ_MKFG00000000.  This version of the project
            (01) has the accession number NZ_MKFG01000000, and consists of
            sequences MKFG01000001-MKFG01000193.
            Bacteria and source DNA available from Ricardo Cavicchioli, UNSW,
            BABS, Sydney, Australia.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. August-2016
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 650.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002215305.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:32:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,734
            CDSs (total)                      :: 3,670
            Genes (coding)                    :: 3,503
            CDSs (with protein)               :: 3,503
            Genes (RNA)                       :: 64
            rRNAs                             :: 4, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 0 of 167
            Pseudo Genes (frameshifted)       :: 38 of 167
            Pseudo Genes (incomplete)         :: 136 of 167
            Pseudo Genes (internal stop)      :: 25 of 167
            Pseudo Genes (multiple problems)  :: 28 of 167
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3633750
                     /organism="Halorubrum lacusprofundi"
                     /mol_type="genomic DNA"
                     /strain="DL18"
                     /isolation_source="water sample"
                     /db_xref="taxon:2247"
                     /geo_loc_name="Antarctica: Deep Lake"
                     /collection_date="2006-12"
WGS         MKFG01000001-MKFG01000193
WGS_SCAFLD  NZ_MKFG01000001-NZ_MKFG01000193
//
LOCUS       NZ_CEMP01000000      3229177 bp    DNA     linear   BCT 22-OCT-2024
DEFINITION  Halobacterium hubeiense strain JI20-6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CEMP00000000
VERSION     NZ_CEMP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3268809
            Assembly: GCF_900003565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium hubeiense
  ORGANISM  Halobacterium hubeiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Jaakkola,T.Salla.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2015) UH, Department of Biosciences and Institute
            of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University
            of, Helsinki, Finland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEMP00000000.1.
            The Halobacterium hubeiense whole genome shotgun (WGS) project has
            the project accession NZ_CEMP00000000.  This version of the project
            (01) has the accession number NZ_CEMP01000000, and consists of
            sequences CEMP01000001-CEMP01000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900003565.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:30:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,554
            CDSs (total)                      :: 3,503
            Genes (coding)                    :: 3,399
            CDSs (with protein)               :: 3,399
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 20 of 104
            Pseudo Genes (incomplete)         :: 87 of 104
            Pseudo Genes (internal stop)      :: 9 of 104
            Pseudo Genes (multiple problems)  :: 12 of 104
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229177
                     /organism="Halobacterium hubeiense"
                     /mol_type="genomic DNA"
                     /strain="JI20-6"
                     /db_xref="taxon:1407499"
WGS         CEMP01000001-CEMP01000010
WGS_SCAFLD  NZ_CEMP01000001-NZ_CEMP01000010
//
LOCUS       NZ_FJMQ01000000      2168485 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus litoralis isolate Thermococcus_litoralis_oil, whole
            genome shotgun sequencing project.
ACCESSION   NZ_FJMQ00000000
VERSION     NZ_FJMQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3878241
            Assembly: GCF_900064395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus litoralis
  ORGANISM  Thermococcus litoralis
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1
  AUTHORS   Johansen,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2016) NTNU, IKMM, Erling Skjalgsons gate 1, 7006,
            Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FJMQ00000000.1.
            The Thermococcus litoralis whole genome shotgun (WGS) project has
            the project accession NZ_FJMQ00000000.  This version of the project
            (01) has the accession number NZ_FJMQ01000000, and consists of
            sequences FJMQ01000001-FJMQ01000207.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900064395.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:23:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,417
            CDSs (total)                      :: 2,367
            Genes (coding)                    :: 2,264
            CDSs (with protein)               :: 2,264
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 21 of 103
            Pseudo Genes (incomplete)         :: 88 of 103
            Pseudo Genes (internal stop)      :: 3 of 103
            Pseudo Genes (multiple problems)  :: 8 of 103
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168485
                     /organism="Thermococcus litoralis"
                     /mol_type="genomic DNA"
                     /isolate="Thermococcus_litoralis_oil"
                     /isolation_source="formation liquid"
                     /db_xref="taxon:2265"
WGS         FJMQ01000001-FJMQ01000207
WGS_SCAFLD  NZ_FJMQ01000001-NZ_FJMQ01000207
//
LOCUS       NZ_FJNF01000000      2036821 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Archaeoglobus fulgidus isolate Archaeoglobus_fulgidus_oil, whole
            genome shotgun sequencing project.
ACCESSION   NZ_FJNF00000000
VERSION     NZ_FJNF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3879005
            Assembly: GCF_900069765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Archaeoglobus fulgidus
  ORGANISM  Archaeoglobus fulgidus
            Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi;
            Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
REFERENCE   1
  AUTHORS   Lewin,A. and Johansen,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2016) NTNU, IKMM, Erling Skjalgsons gate 1, 7006,
            Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FJNF00000000.1.
            The Archaeoglobus fulgidus whole genome shotgun (WGS) project has
            the project accession NZ_FJNF00000000.  This version of the project
            (01) has the accession number NZ_FJNF01000000, and consists of
            sequences FJNF01000001-FJNF01000206.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900069765.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:39:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,450
            CDSs (total)                      :: 2,398
            Genes (coding)                    :: 2,331
            CDSs (with protein)               :: 2,331
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 18 of 67
            Pseudo Genes (incomplete)         :: 44 of 67
            Pseudo Genes (internal stop)      :: 13 of 67
            Pseudo Genes (multiple problems)  :: 7 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036821
                     /organism="Archaeoglobus fulgidus"
                     /mol_type="genomic DNA"
                     /isolate="Archaeoglobus_fulgidus_oil"
                     /isolation_source="formation liquid"
                     /db_xref="taxon:2234"
WGS         FJNF01000001-FJNF01000206
WGS_SCAFLD  NZ_FJNF01000001-NZ_FJNF01000206
//
LOCUS       NZ_MRCT01000000      1920674 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter sp. 87.7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MRCT00000000
VERSION     NZ_MRCT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05608120
            Assembly: GCF_002208625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter sp. 87.7
  ORGANISM  Methanobrevibacter sp. 87.7
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1920674)
  AUTHORS   Yeoman,C., Mosoni,P. and White,B.
  TITLE     De novo assembly of methanobrevibacter sp 87.7
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1920674)
  AUTHORS   Yeoman,C., Mosoni,P. and White,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2016) HPCBio, Roy J. Carver Biotechnology Center,
            University of Illinois Urbana-Champaign, 1206 W. Gregory Dr.,
            Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MRCT00000000.1.
            The Methanobrevibacter sp. 87.7 whole genome shotgun (WGS) project
            has the project accession NZ_MRCT00000000.  This version of the
            project (01) has the accession number NZ_MRCT01000000, and consists
            of sequences MRCT01000001-MRCT01000300.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-DEC-2016
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 500.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002208625.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:26:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,684
            CDSs (total)                      :: 1,640
            Genes (coding)                    :: 1,615
            CDSs (with protein)               :: 1,615
            Genes (RNA)                       :: 44
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 13 of 25
            Pseudo Genes (incomplete)         :: 13 of 25
            Pseudo Genes (internal stop)      :: 0 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920674
                     /organism="Methanobrevibacter sp. 87.7"
                     /mol_type="genomic DNA"
                     /strain="87.7"
                     /isolation_source="rumen"
                     /host="Lamb"
                     /db_xref="taxon:387957"
                     /geo_loc_name="France"
                     /lat_lon="45.7203 N 3.0184 E"
                     /collection_date="1999"
WGS         MRCT01000001-MRCT01000300
WGS_SCAFLD  NZ_MRCT01000001-NZ_MRCT01000300
//
LOCUS       NZ_CEMZ01000000      3227942 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobacterium hubeiense strain JI20-8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CEMZ00000000
VERSION     NZ_CEMZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3268811
            Assembly: GCF_900004275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium hubeiense
  ORGANISM  Halobacterium hubeiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Jaakkola,T.Salla.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2015) UH, Department of Biosciences and Institute
            of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University
            of, Helsinki, Finland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEMZ00000000.1.
            The Halobacterium hubeiense whole genome shotgun (WGS) project has
            the project accession NZ_CEMZ00000000.  This version of the project
            (01) has the accession number NZ_CEMZ01000000, and consists of
            sequences CEMZ01000001-CEMZ01000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900004275.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:39:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,551
            CDSs (total)                      :: 3,499
            Genes (coding)                    :: 3,399
            CDSs (with protein)               :: 3,399
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 20 of 100
            Pseudo Genes (incomplete)         :: 83 of 100
            Pseudo Genes (internal stop)      :: 9 of 100
            Pseudo Genes (multiple problems)  :: 12 of 100
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227942
                     /organism="Halobacterium hubeiense"
                     /mol_type="genomic DNA"
                     /strain="JI20-8"
                     /db_xref="taxon:1407499"
WGS         CEMZ01000001-CEMZ01000011
WGS_SCAFLD  NZ_CEMZ01000001-NZ_CEMZ01000011
//
LOCUS       NZ_MBKP01000000      3164721 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanolobus psychrotolerans strain YSF-03, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MBKP00000000
VERSION     NZ_MBKP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05413111
            Assembly: GCF_002243045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolobus psychrotolerans
  ORGANISM  Methanolobus psychrotolerans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 3164721)
  AUTHORS   Huang,H.H., Lai,M.C., Weng,C.Y., Tang,S.L., Chen,S.C.,
            Degermendzhy,A.G. and Rogozin,D.Y.
  TITLE     Isolation and characterization of methanogenic archaea from saline
            meromictic lake at Siberia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3164721)
  AUTHORS   Huang,H.H., Chen,S.C. and Lai,M.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2016) Life Sciences, National Chung Hsing
            University, 145 Xingda Rd, Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MBKP00000000.1.
            The Methanolobus psychrotolerans whole genome shotgun (WGS) project
            has the project accession NZ_MBKP00000000.  This version of the
            project (01) has the accession number NZ_MBKP01000000, and consists
            of sequences MBKP01000001-MBKP01000106.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. January-2016
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002243045.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:33:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,139
            CDSs (total)                      :: 3,082
            Genes (coding)                    :: 2,992
            CDSs (with protein)               :: 2,992
            Genes (RNA)                       :: 57
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 16 of 90
            Pseudo Genes (incomplete)         :: 72 of 90
            Pseudo Genes (internal stop)      :: 17 of 90
            Pseudo Genes (multiple problems)  :: 13 of 90
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164721
                     /organism="Methanolobus psychrotolerans"
                     /mol_type="genomic DNA"
                     /strain="YSF-03"
                     /isolation_source="lake sediments"
                     /type_material="type strain of Methanolobus
                     psychrotolerans"
                     /db_xref="taxon:1874706"
                     /geo_loc_name="Russia: Lake Shira"
                     /collection_date="2010"
WGS         MBKP01000001-MBKP01000106
WGS_SCAFLD  NZ_MBKP01000001-NZ_MBKP01000106
//
LOCUS       NZ_FZNQ01000000      3477860 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum vacuolatum strain DSM 8800, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FZNQ00000000
VERSION     NZ_FZNQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06264855
            Assembly: GCF_900188065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum vacuolatum
  ORGANISM  Halorubrum vacuolatum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FZNQ00000000.1.
            The Halorubrum vacuolatum whole genome shotgun (WGS) project has
            the project accession NZ_FZNQ00000000.  This version of the project
            (01) has the accession number NZ_FZNQ01000000, and consists of
            sequences FZNQ01000001-FZNQ01000072.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900188065.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:47:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,421
            CDSs (total)                      :: 3,355
            Genes (coding)                    :: 3,253
            CDSs (with protein)               :: 3,253
            Genes (RNA)                       :: 66
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 20 of 102
            Pseudo Genes (incomplete)         :: 83 of 102
            Pseudo Genes (internal stop)      :: 16 of 102
            Pseudo Genes (multiple problems)  :: 16 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3477860
                     /organism="Halorubrum vacuolatum"
                     /mol_type="genomic DNA"
                     /strain="DSM 8800"
                     /type_material="type strain of Halorubrum vacuolatum"
                     /db_xref="taxon:63740"
                     /geo_loc_name="Kenya:Lake Magadi, Kenya"
WGS         FZNQ01000001-FZNQ01000072
WGS_SCAFLD  NZ_FZNQ01000001-NZ_FZNQ01000072
//
LOCUS       NZ_FWYE01000000      1534155 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Picrophilus oshimae DSM 9789, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FWYE00000000
VERSION     NZ_FWYE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02745355
            Assembly: GCF_900176435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Picrophilus oshimae DSM 9789
  ORGANISM  Picrophilus oshimae DSM 9789
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Picrophilaceae; Picrophilus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FWYE00000000.1.
            The Picrophilus oshimae DSM 9789 whole genome shotgun (WGS) project
            has the project accession NZ_FWYE00000000.  This version of the
            project (01) has the accession number NZ_FWYE01000000, and consists
            of sequences FWYE01000001-FWYE01000006.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900176435.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:08:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,637
            CDSs (total)                      :: 1,586
            Genes (coding)                    :: 1,577
            CDSs (with protein)               :: 1,577
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 3 of 9
            Pseudo Genes (incomplete)         :: 4 of 9
            Pseudo Genes (internal stop)      :: 3 of 9
            Pseudo Genes (multiple problems)  :: 1 of 9
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534155
                     /organism="Picrophilus oshimae DSM 9789"
                     /mol_type="genomic DNA"
                     /strain="DSM 9789"
                     /type_material="type strain of Picrophilus oshimae"
                     /db_xref="taxon:1122961"
                     /geo_loc_name="Japan:Kawayu, Hokkaido"
WGS         FWYE01000001-FWYE01000006
WGS_SCAFLD  NZ_FWYE01000001-NZ_FWYE01000006
//
LOCUS       NZ_DAVR01000000      2274541 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Archaeoglobus sp. UBA230, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAVR00000000
VERSION     NZ_DAVR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027201
            Sequence Read Archive: SRR5037070
            Assembly: GCF_002507545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Archaeoglobus sp. UBA230 (marine sediment metagenome)
  ORGANISM  Archaeoglobus sp. UBA230
            Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi;
            Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
REFERENCE   1  (bases 1 to 2274541)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2274541)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAVR00000000.1.
            The Archaeoglobus sp. UBA230 whole genome shotgun (WGS) project has
            the project accession NZ_DAVR00000000.  This version of the project
            (01) has the accession number NZ_DAVR01000000, and consists of
            sequences DAVR01000001-DAVR01000050.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 336.85x
            Sequencing Technology :: Illumina HiSeq 1000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002507545.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 21:04:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,703
            CDSs (total)                      :: 2,652
            Genes (coding)                    :: 2,625
            CDSs (with protein)               :: 2,625
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 13 of 27
            Pseudo Genes (incomplete)         :: 23 of 27
            Pseudo Genes (internal stop)      :: 3 of 27
            Pseudo Genes (multiple problems)  :: 10 of 27
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274541
                     /organism="Archaeoglobus sp. UBA230"
                     /mol_type="genomic DNA"
                     /isolate="UBA230"
                     /isolation_source="sediment"
                     /db_xref="taxon:1915565"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /metagenome_source="marine sediment metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX742692"
WGS         DAVR01000001-DAVR01000050
WGS_SCAFLD  NZ_DAVR01000001-NZ_DAVR01000050
//
LOCUS       NZ_MWPH01000000      3914301 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronolimnobius baerhuensis strain CGMCC 1.3597, whole genome
            shotgun sequencing project.
ACCESSION   NZ_MWPH00000000
VERSION     NZ_MWPH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06445343
            Assembly: GCF_002177135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronolimnobius baerhuensis
  ORGANISM  Natronolimnobius baerhuensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronolimnobius.
REFERENCE   1  (bases 1 to 3914301)
  AUTHORS   Zhao,B.
  TITLE     Natronthermophilus aegyptiacus gen. nov.,sp. nov., an aerobic,
            extremely halophilic alkalithermophilic archaeon isolated from the
            athalassohaline Wadi An Natrun, Egypt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3914301)
  AUTHORS   Zhao,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2017) Graduate School, Chinese Academy of
            Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District,
            Beijing 100081, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MWPH00000000.1.
            The Natronolimnobius baerhuensis whole genome shotgun (WGS) project
            has the project accession NZ_MWPH00000000.  This version of the
            project (01) has the accession number NZ_MWPH01000000, and consists
            of sequences MWPH01000001-MWPH01000008.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MicrobeTrakr v. 0.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002177135.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:29:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,887
            CDSs (total)                      :: 3,830
            Genes (coding)                    :: 3,773
            CDSs (with protein)               :: 3,773
            Genes (RNA)                       :: 57
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 19 of 57
            Pseudo Genes (incomplete)         :: 39 of 57
            Pseudo Genes (internal stop)      :: 15 of 57
            Pseudo Genes (multiple problems)  :: 14 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3914301
                     /organism="Natronolimnobius baerhuensis"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.3597"
                     /isolation_source="soda lake"
                     /type_material="type strain of Natronolimnobius
                     baerhuensis"
                     /db_xref="taxon:253108"
                     /geo_loc_name="China: Inner Mongolia Autonomous Region"
                     /collection_date="1999-08-15"
WGS         MWPH01000001-MWPH01000008
WGS_SCAFLD  NZ_MWPH01000001-NZ_MWPH01000008
//
LOCUS       NZ_FUYK01000000      1552995 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Candidatus Nitrosotalea bavarica isolate SBT1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FUYK00000000
VERSION     NZ_FUYK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA101071168
            Assembly: GCF_900167955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosotalea bavarica
  ORGANISM  Candidatus Nitrosotalea bavarica
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosotaleales;
            Nitrosotaleaceae; Nitrosotalea.
REFERENCE   1
  AUTHORS   Herbold,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2017) UNIVERSITY OF VIENNA, DMES, Althanstr. 14,
            A-1090 Vienna, Austria
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUYK00000000.1.
            The Candidatus Nitrosotalea bavarica whole genome shotgun (WGS)
            project has the project accession NZ_FUYK00000000.  This version of
            the project (01) has the accession number NZ_FUYK01000000, and
            consists of sequences FUYK01000001-FUYK01000019.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900167955.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 22:56:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,872
            CDSs (total)                      :: 1,823
            Genes (coding)                    :: 1,814
            CDSs (with protein)               :: 1,814
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 1 of 9
            Pseudo Genes (incomplete)         :: 8 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552995
                     /organism="Candidatus Nitrosotalea bavarica"
                     /mol_type="genomic DNA"
                     /isolate="SBT1"
                     /db_xref="taxon:1903277"
WGS         FUYK01000001-FUYK01000019
WGS_SCAFLD  NZ_FUYK01000001-NZ_FUYK01000019
//
LOCUS       NZ_CEMR01000000      3229355 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobacterium hubeiense strain JI20-5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CEMR00000000
VERSION     NZ_CEMR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3268808
            Assembly: GCF_900005775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium hubeiense
  ORGANISM  Halobacterium hubeiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1
  AUTHORS   Jaakkola,T.Salla.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2015) UH, Department of Biosciences and Institute
            of Biotechnology, Viikinkaari 5, (P.O. Box 56), 00014, University
            of, Helsinki, Finland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEMR00000000.1.
            The Halobacterium hubeiense whole genome shotgun (WGS) project has
            the project accession NZ_CEMR00000000.  This version of the project
            (01) has the accession number NZ_CEMR01000000, and consists of
            sequences CEMR01000001-CEMR01000015.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900005775.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:44:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,539
            CDSs (total)                      :: 3,487
            Genes (coding)                    :: 3,393
            CDSs (with protein)               :: 3,393
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 17 of 94
            Pseudo Genes (incomplete)         :: 78 of 94
            Pseudo Genes (internal stop)      :: 9 of 94
            Pseudo Genes (multiple problems)  :: 10 of 94
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229355
                     /organism="Halobacterium hubeiense"
                     /mol_type="genomic DNA"
                     /strain="JI20-5"
                     /db_xref="taxon:1407499"
WGS         CEMR01000001-CEMR01000015
WGS_SCAFLD  NZ_CEMR01000001-NZ_CEMR01000015
//
LOCUS       NZ_PEND01000000      4614977 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halegenticoccus soli strain SYSU A9-0, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PEND00000000
VERSION     NZ_PEND00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07633033
            Assembly: GCF_002844195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halegenticoccus soli
  ORGANISM  Halegenticoccus soli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halegenticoccus.
REFERENCE   1  (bases 1 to 4614977)
  AUTHORS   Liu,B., Narsing Rao,M.P., Yin,X. and Li,W.
  TITLE     Draft genome and description of Halegenticoccus soli gen. nov., sp.
            nov., isolated from salt soil of Aibi Salt Lake
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4614977)
  AUTHORS   Liu,B., Narsing Rao,M.P., Yin,X. and Li,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2017) School of Life Sciences, Sun Yat-Sen
            University, No. 135, Xingang West Road, Guangzhou 510275, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PEND00000000.1.
            The Halegenticoccus soli whole genome shotgun (WGS) project has the
            project accession NZ_PEND00000000.  This version of the project
            (01) has the accession number NZ_PEND01000000, and consists of
            sequences PEND01000001-PEND01000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. JUN-2016
            Expected Final Version :: yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002844195.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 23:43:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,619
            CDSs (total)                      :: 4,559
            Genes (coding)                    :: 4,425
            CDSs (with protein)               :: 4,425
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 51 of 134
            Pseudo Genes (incomplete)         :: 92 of 134
            Pseudo Genes (internal stop)      :: 23 of 134
            Pseudo Genes (multiple problems)  :: 29 of 134
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614977
                     /organism="Halegenticoccus soli"
                     /mol_type="genomic DNA"
                     /strain="SYSU A9-0"
                     /isolation_source="salt lake"
                     /culture_collection="KCTC:4241"
                     /type_material="type strain of Halegenticoccus soli"
                     /db_xref="taxon:1985678"
                     /geo_loc_name="China"
                     /collection_date="2014-08-14"
WGS         PEND01000001-PEND01000016
WGS_SCAFLD  NZ_KZ537954
WGS_SCAFLD  NZ_PEND01000001-NZ_PEND01000014
//
LOCUS       NZ_LOPW02000000      3901640 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax marisrubri strain SB3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LOPW00000000
VERSION     NZ_LOPW00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04318428
            Assembly: GCF_001469875.2
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax marisrubri
  ORGANISM  Haloferax marisrubri
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3901640)
  AUTHORS   Zhang,G. and Stingl,U.
  TITLE     Haloferax marisrubri sp. nov., isolated from the Discovery deep
            brine-seawater interface in the Red Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3901640)
  AUTHORS   Zhang,G. and Stingl,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2017) Red Sea Research Center, King Abdullah
            University of Science & Technology, Thuwal, Jeddah 23955-6900,
            Saudi Arabia
REFERENCE   3  (bases 1 to 3901640)
  AUTHORS   Zhang,G., Stingl,U. and Rashid,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2015) Red Sea Research Center, King Abdulah
            University of Science and Technology, Thuwal, Jeddah 23955-6900,
            Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LOPW00000000.2.
            
            On Feb 1, 2018 this sequence version replaced NZ_LOPW00000000.1.
            The Haloferax marisrubri whole genome shotgun (WGS) project has the
            project accession NZ_LOPW00000000.  This version of the project
            (02) has the accession number NZ_LOPW02000000, and consists of
            sequences LOPW02000001-LOPW02000026.
            Bacteria and source DNA available from JCM:19566.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2014
            Assembly Method        :: Velvet v. September-2014
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001469875.2-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:08:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,981
            CDSs (total)                      :: 3,919
            Genes (coding)                    :: 3,846
            CDSs (with protein)               :: 3,846
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 19 of 73
            Pseudo Genes (incomplete)         :: 59 of 73
            Pseudo Genes (internal stop)      :: 10 of 73
            Pseudo Genes (multiple problems)  :: 12 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3901640
                     /organism="Haloferax marisrubri"
                     /mol_type="genomic DNA"
                     /strain="SB3"
                     /isolation_source="Discovery deep brine-seawater
                     interface"
                     /culture_collection="JCM:19566"
                     /type_material="type strain of Haloferax marisrubri"
                     /db_xref="taxon:1544719"
                     /geo_loc_name="Saudi Arabia: Red Sea"
                     /collection_date="2011-10-04"
                     /collected_by="Hikmawan Tyas"
                     /identified_by="Guishan Zhang"
WGS         LOPW02000001-LOPW02000026
WGS_SCAFLD  NZ_LOPW02000001-NZ_LOPW02000026
//
LOCUS       NZ_FNVN01000000      3735954 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobellus limi strain CGMCC 1.10331, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNVN00000000
VERSION     NZ_FNVN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488133
            Assembly: GCF_900108165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus limi
  ORGANISM  Halobellus limi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNVN00000000.1.
            The Halobellus limi whole genome shotgun (WGS) project has the
            project accession NZ_FNVN00000000.  This version of the project
            (01) has the accession number NZ_FNVN01000000, and consists of
            sequences FNVN01000001-FNVN01000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900108165.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 23:55:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,725
            CDSs (total)                      :: 3,670
            Genes (coding)                    :: 3,613
            CDSs (with protein)               :: 3,613
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 3 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 23 of 57
            Pseudo Genes (incomplete)         :: 39 of 57
            Pseudo Genes (internal stop)      :: 12 of 57
            Pseudo Genes (multiple problems)  :: 14 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735954
                     /organism="Halobellus limi"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10331"
                     /type_material="type strain of Halobellus limi"
                     /db_xref="taxon:699433"
WGS         FNVN01000001-FNVN01000011
WGS_SCAFLD  NZ_FNVN01000001-NZ_FNVN01000011
//
LOCUS       NZ_LWHG01000000      4896694 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haladaptatus sp. R4, whole genome shotgun sequencing project.
ACCESSION   NZ_LWHG00000000
VERSION     NZ_LWHG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04592497
            Assembly: GCF_001625445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. R4
  ORGANISM  Haladaptatus sp. R4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 4896694)
  AUTHORS   Mukhopadhyay,S.K.
  TITLE     Genome sequence of halophilic archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4896694)
  AUTHORS   Sen,U., Mukhopadhyay,S.K., Roy,C., Rameez,M.J. and Ghosh,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2016) Microbiology, The University of Burdwan,
            Golapbag, Burdwan, West Bengal 713104, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWHG00000000.1.
            The Haladaptatus sp. R4 whole genome shotgun (WGS) project has the
            project accession NZ_LWHG00000000.  This version of the project
            (01) has the accession number NZ_LWHG01000000, and consists of
            sequences LWHG01000001-LWHG01000034.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 129.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001625445.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:51:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,176
            CDSs (total)                      :: 5,120
            Genes (coding)                    :: 4,635
            CDSs (with protein)               :: 4,635
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 485
            CDSs (without protein)            :: 485
            Pseudo Genes (ambiguous residues) :: 0 of 485
            Pseudo Genes (frameshifted)       :: 389 of 485
            Pseudo Genes (incomplete)         :: 109 of 485
            Pseudo Genes (internal stop)      :: 6 of 485
            Pseudo Genes (multiple problems)  :: 19 of 485
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4896694
                     /organism="Haladaptatus sp. R4"
                     /mol_type="genomic DNA"
                     /strain="R4"
                     /isolation_source="saltern"
                     /db_xref="taxon:1679489"
                     /geo_loc_name="India: Ramnagar, Midnapur, West Bengal."
                     /lat_lon="21.66 N 87.53999999 E"
                     /altitude="6 m"
                     /collection_date="2011-06-28"
                     /collected_by="Urmimala Sen"
                     /identified_by="Subhra Kanti Mukhopadhay"
WGS         LWHG01000001-LWHG01000034
WGS_SCAFLD  NZ_LWHG01000001-NZ_LWHG01000034
//
LOCUS       NZ_PSYU01000000      4019651 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-19N, whole genome shotgun sequencing project.
ACCESSION   NZ_PSYU00000000
VERSION     NZ_PSYU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08382979
            Assembly: GCF_003382985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-19N
  ORGANISM  Haloferax sp. Atlit-19N
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4019651)
  AUTHORS   Shalev,Y.
  TITLE     Comparative analysis of surface elements in the genus Haloferax
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4019651)
  AUTHORS   Altman,N. and Uri,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv, Choose A State 69000,
            Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSYU00000000.1.
            The Haloferax sp. Atlit-19N whole genome shotgun (WGS) project has
            the project accession NZ_PSYU00000000.  This version of the project
            (01) has the accession number NZ_PSYU01000000, and consists of
            sequences PSYU01000001-PSYU01000167.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003382985.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:39:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,092
            CDSs (total)                      :: 4,032
            Genes (coding)                    :: 3,950
            CDSs (with protein)               :: 3,950
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 12 of 82
            Pseudo Genes (incomplete)         :: 74 of 82
            Pseudo Genes (internal stop)      :: 7 of 82
            Pseudo Genes (multiple problems)  :: 11 of 82
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4019651
                     /organism="Haloferax sp. Atlit-19N"
                     /mol_type="genomic DNA"
                     /strain="Atlit-19N"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2077201"
                     /geo_loc_name="Israel: Michmoret coast"
                     /collection_date="2012"
WGS         PSYU01000001-PSYU01000167
WGS_SCAFLD  NZ_PSYU01000001-NZ_PSYU01000167
//
LOCUS       NZ_PSYW01000000      4012076 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-12N, whole genome shotgun sequencing project.
ACCESSION   NZ_PSYW00000000
VERSION     NZ_PSYW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08382977
            Assembly: GCF_003383095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-12N
  ORGANISM  Haloferax sp. Atlit-12N
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4012076)
  AUTHORS   Shalev,Y.
  TITLE     Comparative analysis of surface elements in the genus Haloferax
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4012076)
  AUTHORS   Altman,N. and Uri,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv, Choose A State 69000,
            Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSYW00000000.1.
            The Haloferax sp. Atlit-12N whole genome shotgun (WGS) project has
            the project accession NZ_PSYW00000000.  This version of the project
            (01) has the accession number NZ_PSYW01000000, and consists of
            sequences PSYW01000001-PSYW01000104.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 76x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003383095.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:36:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,134
            CDSs (total)                      :: 4,075
            Genes (coding)                    :: 4,018
            CDSs (with protein)               :: 4,018
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 8 of 57
            Pseudo Genes (incomplete)         :: 47 of 57
            Pseudo Genes (internal stop)      :: 7 of 57
            Pseudo Genes (multiple problems)  :: 5 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4012076
                     /organism="Haloferax sp. Atlit-12N"
                     /mol_type="genomic DNA"
                     /strain="Atlit-12N"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2077203"
                     /geo_loc_name="Israel: Atlit coast"
                     /collection_date="2012"
WGS         PSYW01000001-PSYW01000104
WGS_SCAFLD  NZ_PSYW01000001-NZ_PSYW01000104
//
LOCUS       NZ_QZWE01000000      3873359 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halococcus sp. IIIV-5B, whole genome shotgun sequencing project.
ACCESSION   NZ_QZWE00000000
VERSION     NZ_QZWE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10039696
            Assembly: GCF_003602035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus sp. IIIV-5B
  ORGANISM  Halococcus sp. IIIV-5B
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 3873359)
  AUTHORS   Zayas Rivera,J. and Montalvo Rodriguez,R.
  TITLE     Draft Genome of Halococcus salsifolii, a Novel Species of the
            Halococcus Genus Isolated as an Endophyte of Avicennia germinans,
            at the Solar Salterns of Cabo Rojo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3873359)
  AUTHORS   Zayas Rivera,J. and Montalvo Rodriguez,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2018) Biology, University of Puerto
            Rico-Mayaguez, Departamento de Biologia Call Box 9000, Mayaguez,
            Puerto Rico 00681, Puerto Rico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QZWE00000000.1.
            The Halococcus sp. IIIV-5B whole genome shotgun (WGS) project has
            the project accession NZ_QZWE00000000.  This version of the project
            (01) has the accession number NZ_QZWE01000000, and consists of
            sequences QZWE01000001-QZWE01000083.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Prokka v. 1.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003602035.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:38:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,982
            CDSs (total)                      :: 3,929
            Genes (coding)                    :: 3,848
            CDSs (with protein)               :: 3,848
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 24 of 81
            Pseudo Genes (incomplete)         :: 63 of 81
            Pseudo Genes (internal stop)      :: 12 of 81
            Pseudo Genes (multiple problems)  :: 15 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3873359
                     /organism="Halococcus sp. IIIV-5B"
                     /mol_type="genomic DNA"
                     /strain="IIIV-5B"
                     /host="Avicennia germinans"
                     /db_xref="taxon:2321230"
                     /geo_loc_name="Puerto Rico: Cabo Rojo Solar Salterns"
                     /collection_date="2016-05"
                     /note="endophyte"
WGS         QZWE01000001-QZWE01000083
WGS_SCAFLD  NZ_QZWE01000001-NZ_QZWE01000083
//
LOCUS       NZ_PSYV01000000      3938222 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-16N, whole genome shotgun sequencing project.
ACCESSION   NZ_PSYV00000000
VERSION     NZ_PSYV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08382978
            Assembly: GCF_003383085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-16N
  ORGANISM  Haloferax sp. Atlit-16N
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3938222)
  AUTHORS   Shalev,Y.
  TITLE     Comparative analysis of surface elements in the genus Haloferax
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3938222)
  AUTHORS   Altman,N. and Uri,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv, Choose A State 69000,
            Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSYV00000000.1.
            The Haloferax sp. Atlit-16N whole genome shotgun (WGS) project has
            the project accession NZ_PSYV00000000.  This version of the project
            (01) has the accession number NZ_PSYV01000000, and consists of
            sequences PSYV01000001-PSYV01000050.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 61x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003383085.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:41:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,994
            CDSs (total)                      :: 3,935
            Genes (coding)                    :: 3,888
            CDSs (with protein)               :: 3,888
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 13 of 47
            Pseudo Genes (incomplete)         :: 36 of 47
            Pseudo Genes (internal stop)      :: 3 of 47
            Pseudo Genes (multiple problems)  :: 4 of 47
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938222
                     /organism="Haloferax sp. Atlit-16N"
                     /mol_type="genomic DNA"
                     /strain="Atlit-16N"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2077202"
                     /geo_loc_name="Israel: Atlit coast"
                     /collection_date="2012"
WGS         PSYV01000001-PSYV01000050
WGS_SCAFLD  NZ_PSYV01000001-NZ_PSYV01000050
//
LOCUS       NZ_RDQE01000000      3592762 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobellus captivus strain ZY8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RDQE00000000
VERSION     NZ_RDQE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10255630
            Assembly: GCF_003697845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus captivus
  ORGANISM  Halobellus captivus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3592762)
  AUTHORS   Chen,S.
  TITLE     A halophilic archaeon isolated from a rock salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3592762)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2018) Department of Biology, Anhui University,
            No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RDQE00000000.1.
            The Halobellus captivus whole genome shotgun (WGS) project has the
            project accession NZ_RDQE00000000.  This version of the project
            (01) has the accession number NZ_RDQE01000000, and consists of
            sequences RDQE01000001-RDQE01000037.
            Bacteria and source DNA available from Salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003697845.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:58:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,602
            CDSs (total)                      :: 3,547
            Genes (coding)                    :: 3,477
            CDSs (with protein)               :: 3,477
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 25 of 70
            Pseudo Genes (incomplete)         :: 53 of 70
            Pseudo Genes (internal stop)      :: 6 of 70
            Pseudo Genes (multiple problems)  :: 13 of 70
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592762
                     /organism="Halobellus captivus"
                     /mol_type="genomic DNA"
                     /strain="ZY8"
                     /isolation_source="Salt mine"
                     /db_xref="taxon:2592614"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="25.86 N 101.10 E"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
                     /identified_by="Shaoxing Chen"
WGS         RDQE01000001-RDQE01000037
WGS_SCAFLD  NZ_RDQE01000001-NZ_RDQE01000037
//
LOCUS       NZ_RBWW01000000      4459149 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula quadrata strain DSM 11927, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RBWW00000000
VERSION     NZ_RBWW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05445701
            Assembly: GCF_003634715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula quadrata
  ORGANISM  Haloarcula quadrata
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4459149)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase
            II (KMG-II): from individual species to whole genera
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4459149)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2018) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RBWW00000000.1.
            The Haloarcula quadrata whole genome shotgun (WGS) project has the
            project accession NZ_RBWW00000000.  This version of the project
            (01) has the accession number NZ_RBWW01000000, and consists of
            sequences RBWW01000001-RBWW01000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis/2.3.0_p5, HGAP 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 126.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003634715.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:57:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,655
            CDSs (total)                      :: 4,593
            Genes (coding)                    :: 4,391
            CDSs (with protein)               :: 4,391
            Genes (RNA)                       :: 62
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 202
            CDSs (without protein)            :: 202
            Pseudo Genes (ambiguous residues) :: 0 of 202
            Pseudo Genes (frameshifted)       :: 51 of 202
            Pseudo Genes (incomplete)         :: 157 of 202
            Pseudo Genes (internal stop)      :: 12 of 202
            Pseudo Genes (multiple problems)  :: 18 of 202
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4459149
                     /organism="Haloarcula quadrata"
                     /mol_type="genomic DNA"
                     /strain="DSM 11927"
                     /culture_collection="DSM:11927"
                     /type_material="type strain of Haloarcula quadrata"
                     /db_xref="taxon:182779"
WGS         RBWW01000001-RBWW01000006
WGS_SCAFLD  NZ_RBWW01000001-NZ_RBWW01000006
//
LOCUS       NZ_QPLP01000000      3888545 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-105R, whole genome shotgun sequencing project.
ACCESSION   NZ_QPLP00000000
VERSION     NZ_QPLP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668323
            Assembly: GCF_003665905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-105R
  ORGANISM  Haloferax sp. Atlit-105R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3888545)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3888545)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPLP00000000.1.
            The Haloferax sp. Atlit-105R whole genome shotgun (WGS) project has
            the project accession NZ_QPLP00000000.  This version of the project
            (01) has the accession number NZ_QPLP01000000, and consists of
            sequences QPLP01000001-QPLP01000069.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 92x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003665905.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:59:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,983
            CDSs (total)                      :: 3,923
            Genes (coding)                    :: 3,853
            CDSs (with protein)               :: 3,853
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 23 of 70
            Pseudo Genes (incomplete)         :: 49 of 70
            Pseudo Genes (internal stop)      :: 10 of 70
            Pseudo Genes (multiple problems)  :: 11 of 70
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3888545
                     /organism="Haloferax sp. Atlit-105R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-105R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282133"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QPLP01000001-QPLP01000069
WGS_SCAFLD  NZ_QPLP01000001-NZ_QPLP01000069
//
LOCUS       NZ_PSYX01000000      4261339 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-10N, whole genome shotgun sequencing project.
ACCESSION   NZ_PSYX00000000
VERSION     NZ_PSYX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08382976
            Assembly: GCF_003586325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-10N
  ORGANISM  Haloferax sp. Atlit-10N
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4261339)
  AUTHORS   Shalev,Y.
  TITLE     Comparative analysis of surface elements in the genus Haloferax
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4261339)
  AUTHORS   Altman,N. and Uri,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv, Choose A State 69000,
            Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSYX00000000.1.
            The Haloferax sp. Atlit-10N whole genome shotgun (WGS) project has
            the project accession NZ_PSYX00000000.  This version of the project
            (01) has the accession number NZ_PSYX01000000, and consists of
            sequences PSYX01000001-PSYX01000205.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 46x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003586325.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:55:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,427
            CDSs (total)                      :: 4,368
            Genes (coding)                    :: 4,245
            CDSs (with protein)               :: 4,245
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 18 of 123
            Pseudo Genes (incomplete)         :: 106 of 123
            Pseudo Genes (internal stop)      :: 8 of 123
            Pseudo Genes (multiple problems)  :: 8 of 123
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4261339
                     /organism="Haloferax sp. Atlit-10N"
                     /mol_type="genomic DNA"
                     /strain="Atlit-10N"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2077204"
                     /geo_loc_name="Israel: Atlit coast"
                     /collection_date="2012"
WGS         PSYX01000001-PSYX01000205
WGS_SCAFLD  NZ_PSYX01000001-NZ_PSYX01000205
//
LOCUS       NZ_QPLN01000000      4191453 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. Atlit-120R, whole genome shotgun sequencing project.
ACCESSION   NZ_QPLN00000000
VERSION     NZ_QPLN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668325
            Assembly: GCF_003665885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. Atlit-120R
  ORGANISM  Haloarcula sp. Atlit-120R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4191453)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4191453)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPLN00000000.1.
            The Haloarcula sp. Atlit-120R whole genome shotgun (WGS) project
            has the project accession NZ_QPLN00000000.  This version of the
            project (01) has the accession number NZ_QPLN01000000, and consists
            of sequences QPLN01000001-QPLN01000129.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 69x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003665885.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:09:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,397
            CDSs (total)                      :: 4,334
            Genes (coding)                    :: 4,234
            CDSs (with protein)               :: 4,234
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 9, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 9, 3 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 16 of 100
            Pseudo Genes (incomplete)         :: 85 of 100
            Pseudo Genes (internal stop)      :: 9 of 100
            Pseudo Genes (multiple problems)  :: 10 of 100
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4191453
                     /organism="Haloarcula sp. Atlit-120R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-120R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282135"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QPLN01000001-QPLN01000129
WGS_SCAFLD  NZ_QPLN01000001-NZ_QPLN01000129
//
LOCUS       NZ_QXIJ01000000      3871390 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobellus sp. Atlit-38R, whole genome shotgun sequencing project.
ACCESSION   NZ_QXIJ00000000
VERSION     NZ_QXIJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668321
            Assembly: GCF_003665925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus sp. Atlit-38R
  ORGANISM  Halobellus sp. Atlit-38R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3871390)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3871390)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXIJ00000000.1.
            The Halobellus sp. Atlit-38R whole genome shotgun (WGS) project has
            the project accession NZ_QXIJ00000000.  This version of the project
            (01) has the accession number NZ_QXIJ01000000, and consists of
            sequences QXIJ01000001-QXIJ01000435.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 59x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003665925.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:13:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,115
            CDSs (total)                      :: 4,060
            Genes (coding)                    :: 3,810
            CDSs (with protein)               :: 3,810
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 250
            CDSs (without protein)            :: 250
            Pseudo Genes (ambiguous residues) :: 0 of 250
            Pseudo Genes (frameshifted)       :: 22 of 250
            Pseudo Genes (incomplete)         :: 236 of 250
            Pseudo Genes (internal stop)      :: 9 of 250
            Pseudo Genes (multiple problems)  :: 17 of 250
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3871390
                     /organism="Halobellus sp. Atlit-38R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-38R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282131"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QXIJ01000001-QXIJ01000435
WGS_SCAFLD  NZ_QXIJ01000001-NZ_QXIJ01000435
//
LOCUS       NZ_QPLO01000000      3879374 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-109R, whole genome shotgun sequencing project.
ACCESSION   NZ_QPLO00000000
VERSION     NZ_QPLO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668324
            Assembly: GCF_003665865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-109R
  ORGANISM  Haloferax sp. Atlit-109R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3879374)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3879374)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPLO00000000.1.
            The Haloferax sp. Atlit-109R whole genome shotgun (WGS) project has
            the project accession NZ_QPLO00000000.  This version of the project
            (01) has the accession number NZ_QPLO01000000, and consists of
            sequences QPLO01000001-QPLO01000049.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 87x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003665865.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:41:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,962
            CDSs (total)                      :: 3,902
            Genes (coding)                    :: 3,835
            CDSs (with protein)               :: 3,835
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 23 of 67
            Pseudo Genes (incomplete)         :: 46 of 67
            Pseudo Genes (internal stop)      :: 10 of 67
            Pseudo Genes (multiple problems)  :: 11 of 67
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3879374
                     /organism="Haloferax sp. Atlit-109R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-109R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282134"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QPLO01000001-QPLO01000049
WGS_SCAFLD  NZ_QPLO01000001-NZ_QPLO01000049
//
LOCUS       NZ_RRCH01000000      3654689 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halocatena pleomorpha strain SPP-AMP-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RRCH00000000
VERSION     NZ_RRCH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10496973
            Assembly: GCF_003862495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halocatena pleomorpha
  ORGANISM  Halocatena pleomorpha
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halocatena.
REFERENCE   1  (bases 1 to 3654689)
  AUTHORS   Pal,Y., Srinivasana,K., Verma,A. and Kumar,P.
  TITLE     Taxonoimc description of Halomarina strain SPP-AMP-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3654689)
  AUTHORS   Pal,Y., Srinivasana,K., Verma,A. and Kumar,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-NOV-2018) Microbial Type Culture Collection and Gene
            Bank, Institute of Microbial Technology, Sector 39A, Chandigarh,
            Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RRCH00000000.1.
            The Halocatena pleomorpha whole genome shotgun (WGS) project has
            the project accession NZ_RRCH00000000.  This version of the project
            (01) has the accession number NZ_RRCH01000000, and consists of
            sequences RRCH01000001-RRCH01000061.
            Bacteria and source DNA available from Dr. S. Krishnamurthi.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: CLC genomics workbench v. 10.0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003862495.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:47:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,635
            CDSs (total)                      :: 3,583
            Genes (coding)                    :: 3,459
            CDSs (with protein)               :: 3,459
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 53 of 124
            Pseudo Genes (incomplete)         :: 86 of 124
            Pseudo Genes (internal stop)      :: 20 of 124
            Pseudo Genes (multiple problems)  :: 30 of 124
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3654689
                     /organism="Halocatena pleomorpha"
                     /mol_type="genomic DNA"
                     /strain="SPP-AMP-1"
                     /isolation_source="salt pan"
                     /type_material="type strain of Halocatena pleomorpha"
                     /db_xref="taxon:1785090"
                     /geo_loc_name="India: Goa"
                     /collection_date="2015-02-20"
WGS         RRCH01000001-RRCH01000061
WGS_SCAFLD  NZ_RRCH01000001-NZ_RRCH01000061
//
LOCUS       NZ_MJCD01000000      3278551 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum lacusprofundi strain HLS1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MJCD00000000
VERSION     NZ_MJCD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05786778
            Assembly: GCF_002215285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum lacusprofundi
  ORGANISM  Halorubrum lacusprofundi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3278551)
  AUTHORS   Erdmann,S., Tschitschko,B. and Cavicchioli,R.
  TITLE     A plasmid goes viral
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3278551)
  AUTHORS   Erdmann,S., Tschitschko,B. and Cavicchioli,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2016) BABS, University of NSW, Chancellery Walk,
            Kensington 2033, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MJCD00000000.1.
            The Halorubrum lacusprofundi whole genome shotgun (WGS) project has
            the project accession NZ_MJCD00000000.  This version of the project
            (01) has the accession number NZ_MJCD01000000, and consists of
            sequences MJCD01000001-MJCD01000277.
            Bacteria and source DNA available from Ricardo Cavicchioli, UNSW,
            BABS, Sydney, Australia.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. August-2016
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 750.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002215285.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:50:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,483
            CDSs (total)                      :: 3,425
            Genes (coding)                    :: 3,241
            CDSs (with protein)               :: 3,241
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 34 of 184
            Pseudo Genes (incomplete)         :: 162 of 184
            Pseudo Genes (internal stop)      :: 19 of 184
            Pseudo Genes (multiple problems)  :: 26 of 184
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3278551
                     /organism="Halorubrum lacusprofundi"
                     /mol_type="genomic DNA"
                     /strain="HLS1"
                     /isolation_source="water sample"
                     /db_xref="taxon:2247"
                     /geo_loc_name="Antarctica: Deep Lake"
                     /collection_date="2014"
WGS         MJCD01000001-MJCD01000277
WGS_SCAFLD  NZ_MJCD01000001-NZ_MJCD01000277
//
LOCUS       NZ_NHPD01000000      3274714 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum ezzemoulense strain Ec15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NHPD00000000
VERSION     NZ_NHPD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716041
            Assembly: GCF_002252875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3274714)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3274714)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHPD00000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_NHPD00000000.  This version of the project
            (01) has the accession number NZ_NHPD01000000, and consists of
            sequences NHPD01000001-NHPD01000073.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 82x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252875.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:02:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,304
            CDSs (total)                      :: 3,252
            Genes (coding)                    :: 3,173
            CDSs (with protein)               :: 3,173
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 24 of 79
            Pseudo Genes (incomplete)         :: 58 of 79
            Pseudo Genes (internal stop)      :: 13 of 79
            Pseudo Genes (multiple problems)  :: 15 of 79
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3274714
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="Ec15"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHPD01000001-NHPD01000073
WGS_SCAFLD  NZ_NHPD01000001-NZ_NHPD01000073
//
LOCUS       NZ_FZNK01000000      3666854 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum ezzemoulense strain DSM 19316, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FZNK00000000
VERSION     NZ_FZNK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06266787
            Assembly: GCF_900188075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FZNK00000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_FZNK00000000.  This version of the project
            (01) has the accession number NZ_FZNK01000000, and consists of
            sequences FZNK01000001-FZNK01000049.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900188075.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:58:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,717
            CDSs (total)                      :: 3,653
            Genes (coding)                    :: 3,536
            CDSs (with protein)               :: 3,536
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 32 of 117
            Pseudo Genes (incomplete)         :: 94 of 117
            Pseudo Genes (internal stop)      :: 22 of 117
            Pseudo Genes (multiple problems)  :: 27 of 117
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3666854
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="DSM 19316"
                     /type_material="type strain of Halorubrum chaoviator"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Mexico: Baja California, Pacific Coast"
WGS         FZNK01000001-FZNK01000049
WGS_SCAFLD  NZ_FZNK01000001-NZ_FZNK01000049
//
LOCUS       NZ_NHPA01000000      3346227 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum ezzemoulense strain Ga2p, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NHPA00000000
VERSION     NZ_NHPA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716044
            Assembly: GCF_002252815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3346227)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3346227)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHPA00000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_NHPA00000000.  This version of the project
            (01) has the accession number NZ_NHPA01000000, and consists of
            sequences NHPA01000001-NHPA01000083.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252815.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:06:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,488
            CDSs (total)                      :: 3,435
            Genes (coding)                    :: 3,082
            CDSs (with protein)               :: 3,082
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 353
            CDSs (without protein)            :: 353
            Pseudo Genes (ambiguous residues) :: 0 of 353
            Pseudo Genes (frameshifted)       :: 94 of 353
            Pseudo Genes (incomplete)         :: 284 of 353
            Pseudo Genes (internal stop)      :: 21 of 353
            Pseudo Genes (multiple problems)  :: 43 of 353
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3346227
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="Ga2p"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHPA01000001-NHPA01000083
WGS_SCAFLD  NZ_NHPA01000001-NZ_NHPA01000083
//
LOCUS       NZ_NHOZ01000000      3352476 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum ezzemoulense strain Ga36, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NHOZ00000000
VERSION     NZ_NHOZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716045
            Assembly: GCF_002252805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3352476)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3352476)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHOZ00000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_NHOZ00000000.  This version of the project
            (01) has the accession number NZ_NHOZ01000000, and consists of
            sequences NHOZ01000001-NHOZ01000154.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252805.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:01:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,481
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,306
            CDSs (with protein)               :: 3,306
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 30 of 125
            Pseudo Genes (incomplete)         :: 96 of 125
            Pseudo Genes (internal stop)      :: 11 of 125
            Pseudo Genes (multiple problems)  :: 11 of 125
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352476
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="Ga36"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHOZ01000001-NHOZ01000154
WGS_SCAFLD  NZ_NHOZ01000001-NZ_NHOZ01000154
//
LOCUS       NZ_NHOX01000000      2970568 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Ib24, whole genome shotgun sequencing project.
ACCESSION   NZ_NHOX00000000
VERSION     NZ_NHOX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716047
            Assembly: GCF_002252745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Ib24
  ORGANISM  Halorubrum sp. Ib24
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 2970568)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2970568)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHOX00000000.1.
            The Halorubrum sp. Ib24 whole genome shotgun (WGS) project has the
            project accession NZ_NHOX00000000.  This version of the project
            (01) has the accession number NZ_NHOX01000000, and consists of
            sequences NHOX01000001-NHOX01000045.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 47x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252745.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:03:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,919
            CDSs (total)                      :: 2,878
            Genes (coding)                    :: 2,719
            CDSs (with protein)               :: 2,719
            Genes (RNA)                       :: 41
            rRNAs                             :: 1 (23S)
            complete rRNAs                    :: 1 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 87 of 159
            Pseudo Genes (incomplete)         :: 78 of 159
            Pseudo Genes (internal stop)      :: 15 of 159
            Pseudo Genes (multiple problems)  :: 19 of 159
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2970568
                     /organism="Halorubrum sp. Ib24"
                     /mol_type="genomic DNA"
                     /strain="Ib24"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:1383850"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHOX01000001-NHOX01000045
WGS_SCAFLD  NZ_NHOX01000001-NZ_NHOX01000045
//
LOCUS       NZ_NHOW01000000      3702022 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum ezzemoulense strain LD3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NHOW00000000
VERSION     NZ_NHOW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716048
            Assembly: GCF_002252725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3702022)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3702022)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHOW00000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_NHOW00000000.  This version of the project
            (01) has the accession number NZ_NHOW01000000, and consists of
            sequences NHOW01000001-NHOW01000238.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252725.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:08:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,872
            CDSs (total)                      :: 3,808
            Genes (coding)                    :: 3,616
            CDSs (with protein)               :: 3,616
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 192
            CDSs (without protein)            :: 192
            Pseudo Genes (ambiguous residues) :: 0 of 192
            Pseudo Genes (frameshifted)       :: 38 of 192
            Pseudo Genes (incomplete)         :: 150 of 192
            Pseudo Genes (internal stop)      :: 31 of 192
            Pseudo Genes (multiple problems)  :: 25 of 192
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3702022
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="LD3"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHOW01000001-NHOW01000238
WGS_SCAFLD  NZ_NHOW01000001-NZ_NHOW01000238
//
LOCUS       NZ_NSKC01000000      3506649 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum salipaludis strain WN019, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NSKC00000000
VERSION     NZ_NSKC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07573028
            Assembly: GCF_002286985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum salipaludis
  ORGANISM  Halorubrum salipaludis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3506649)
  AUTHORS   Liu,D. and Zhang,G.
  TITLE     The strain WRN001 was isolated from Binhai saline alkaline soil,
            Tianjin, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3506649)
  AUTHORS   Liu,D. and Zhang,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2017) Key Laboratory of Microbial Resources
            Collection and Preservation, Institute of Agricultural c and
            Regional Planning, Chinese Academy of Agricultural Sciences, No.12
            Zhongguancun South St.,Haidian District, Beijing, Beijing 100081,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NSKC00000000.1.
            The Halorubrum salipaludis whole genome shotgun (WGS) project has
            the project accession NZ_NSKC00000000.  This version of the project
            (01) has the accession number NZ_NSKC01000000, and consists of
            sequences NSKC01000001-NSKC01000027.
            Bacteria and source DNA available from KCTC:4269.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002286985.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:14:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,440
            CDSs (total)                      :: 3,382
            Genes (coding)                    :: 3,338
            CDSs (with protein)               :: 3,338
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 9 of 44
            Pseudo Genes (incomplete)         :: 36 of 44
            Pseudo Genes (internal stop)      :: 8 of 44
            Pseudo Genes (multiple problems)  :: 7 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3506649
                     /organism="Halorubrum salipaludis"
                     /mol_type="genomic DNA"
                     /strain="WN019"
                     /isolation_source="saline alkaline soil"
                     /type_material="type strain of Halorubrum salipaludis"
                     /db_xref="taxon:2032630"
                     /geo_loc_name="China: Binhai, Tianjin"
                     /collection_date="2016-10"
WGS         NSKC01000001-NSKC01000027
WGS_SCAFLD  NZ_NSKC01000001-NZ_NSKC01000027
//
LOCUS       NZ_NHPE01000000      3625529 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Eb13, whole genome shotgun sequencing project.
ACCESSION   NZ_NHPE00000000
VERSION     NZ_NHPE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716040
            Assembly: GCF_002252895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Eb13
  ORGANISM  Halorubrum sp. Eb13
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3625529)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625529)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHPE00000000.1.
            The Halorubrum sp. Eb13 whole genome shotgun (WGS) project has the
            project accession NZ_NHPE00000000.  This version of the project
            (01) has the accession number NZ_NHPE01000000, and consists of
            sequences NHPE01000001-NHPE01000153.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 41x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252895.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:05:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,664
            CDSs (total)                      :: 3,612
            Genes (coding)                    :: 3,476
            CDSs (with protein)               :: 3,476
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 32 of 136
            Pseudo Genes (incomplete)         :: 109 of 136
            Pseudo Genes (internal stop)      :: 20 of 136
            Pseudo Genes (multiple problems)  :: 20 of 136
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625529
                     /organism="Halorubrum sp. Eb13"
                     /mol_type="genomic DNA"
                     /strain="Eb13"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:1383843"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHPE01000001-NHPE01000153
WGS_SCAFLD  NZ_NHPE01000001-NZ_NHPE01000153
//
LOCUS       NZ_NHOY01000000      3811031 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Hd13, whole genome shotgun sequencing project.
ACCESSION   NZ_NHOY00000000
VERSION     NZ_NHOY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716046
            Assembly: GCF_002252755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Hd13
  ORGANISM  Halorubrum sp. Hd13
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3811031)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3811031)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHOY00000000.1.
            The Halorubrum sp. Hd13 whole genome shotgun (WGS) project has the
            project accession NZ_NHOY00000000.  This version of the project
            (01) has the accession number NZ_NHOY01000000, and consists of
            sequences NHOY01000001-NHOY01000130.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 68x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252755.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:17:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,790
            CDSs (total)                      :: 3,737
            Genes (coding)                    :: 3,617
            CDSs (with protein)               :: 3,617
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 32 of 120
            Pseudo Genes (incomplete)         :: 90 of 120
            Pseudo Genes (internal stop)      :: 21 of 120
            Pseudo Genes (multiple problems)  :: 20 of 120
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3811031
                     /organism="Halorubrum sp. Hd13"
                     /mol_type="genomic DNA"
                     /strain="Hd13"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:1480728"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHOY01000001-NHOY01000130
WGS_SCAFLD  NZ_NHOY01000001-NZ_NHOY01000130
//
LOCUS       NZ_NDWV01000000      3665422 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum ezzemoulense strain DSM 19316, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NDWV00000000
VERSION     NZ_NDWV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06765716
            Assembly: GCF_002379115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3665422)
  AUTHORS   De La Haba,R., Sanchez-Porro,C., Infante-Dominguez,C. and
            Ventosa,A.
  TITLE     MLSA of the genus Halorubrum
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3665422)
  AUTHORS   De La Haba,R., Sanchez-Porro,C., Infante-Dominguez,C. and
            Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2017) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NDWV00000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_NDWV00000000.  This version of the project
            (01) has the accession number NZ_NDWV01000000, and consists of
            sequences NDWV01000001-NDWV01000105.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Spade v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002379115.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:15:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,745
            CDSs (total)                      :: 3,678
            Genes (coding)                    :: 3,527
            CDSs (with protein)               :: 3,527
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 37 of 151
            Pseudo Genes (incomplete)         :: 123 of 151
            Pseudo Genes (internal stop)      :: 21 of 151
            Pseudo Genes (multiple problems)  :: 27 of 151
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665422
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="DSM 19316"
                     /isolation_source="sea salt crystal"
                     /culture_collection="DSM:19316"
                     /type_material="type strain of Halorubrum chaoviator"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Mexico"
                     /collection_date="2008"
WGS         NDWV01000001-NDWV01000105
WGS_SCAFLD  NZ_NDWV01000001-NZ_NDWV01000105
//
LOCUS       NZ_NHPF01000000      3741587 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Ea8, whole genome shotgun sequencing project.
ACCESSION   NZ_NHPF00000000
VERSION     NZ_NHPF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716039
            Assembly: GCF_002252925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Ea8
  ORGANISM  Halorubrum sp. Ea8
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3741587)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3741587)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHPF00000000.1.
            The Halorubrum sp. Ea8 whole genome shotgun (WGS) project has the
            project accession NZ_NHPF00000000.  This version of the project
            (01) has the accession number NZ_NHPF01000000, and consists of
            sequences NHPF01000001-NHPF01000165.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 44x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252925.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:22:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,798
            CDSs (total)                      :: 3,744
            Genes (coding)                    :: 3,621
            CDSs (with protein)               :: 3,621
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 37 of 123
            Pseudo Genes (incomplete)         :: 91 of 123
            Pseudo Genes (internal stop)      :: 18 of 123
            Pseudo Genes (multiple problems)  :: 19 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3741587
                     /organism="Halorubrum sp. Ea8"
                     /mol_type="genomic DNA"
                     /strain="Ea8"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:1383841"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHPF01000001-NHPF01000165
WGS_SCAFLD  NZ_NHPF01000001-NZ_NHPF01000165
//
LOCUS       NZ_NHPG01000000      3925495 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Ea1, whole genome shotgun sequencing project.
ACCESSION   NZ_NHPG00000000
VERSION     NZ_NHPG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716038
            Assembly: GCF_002252965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Ea1
  ORGANISM  Halorubrum sp. Ea1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3925495)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3925495)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHPG00000000.1.
            The Halorubrum sp. Ea1 whole genome shotgun (WGS) project has the
            project accession NZ_NHPG00000000.  This version of the project
            (01) has the accession number NZ_NHPG01000000, and consists of
            sequences NHPG01000001-NHPG01000157.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252965.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:24:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,011
            CDSs (total)                      :: 3,956
            Genes (coding)                    :: 3,791
            CDSs (with protein)               :: 3,791
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 44 of 165
            Pseudo Genes (incomplete)         :: 130 of 165
            Pseudo Genes (internal stop)      :: 29 of 165
            Pseudo Genes (multiple problems)  :: 31 of 165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3925495
                     /organism="Halorubrum sp. Ea1"
                     /mol_type="genomic DNA"
                     /strain="Ea1"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:1480718"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHPG01000001-NHPG01000157
WGS_SCAFLD  NZ_NHPG01000001-NZ_NHPG01000157
//
LOCUS       NZ_NHOA01000000      3578011 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum persicum strain C49, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NHOA00000000
VERSION     NZ_NHOA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716034
            Assembly: GCF_002727125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum persicum
  ORGANISM  Halorubrum persicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3578011)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3578011)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2017) Molecular & Cell Biology, University of
            Conn., 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHOA00000000.1.
            The Halorubrum persicum whole genome shotgun (WGS) project has the
            project accession NZ_NHOA00000000.  This version of the project
            (01) has the accession number NZ_NHOA01000000, and consists of
            sequences NHOA01000001-NHOA01000158.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002727125.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:29:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,633
            CDSs (total)                      :: 3,579
            Genes (coding)                    :: 3,416
            CDSs (with protein)               :: 3,416
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 55 of 163
            Pseudo Genes (incomplete)         :: 118 of 163
            Pseudo Genes (internal stop)      :: 23 of 163
            Pseudo Genes (multiple problems)  :: 27 of 163
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578011
                     /organism="Halorubrum persicum"
                     /mol_type="genomic DNA"
                     /strain="C49"
                     /isolation_source="endorheic salt-lake"
                     /type_material="type strain of Halorubrum persicum"
                     /db_xref="taxon:1383844"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHOA01000001-NHOA01000158
WGS_SCAFLD  NZ_NHOA01000001-NZ_NHOA01000158
//
LOCUS       NZ_NHNZ01000000      3860015 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. C191, whole genome shotgun sequencing project.
ACCESSION   NZ_NHNZ00000000
VERSION     NZ_NHNZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716032
            Assembly: GCF_002727095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. C191
  ORGANISM  Halorubrum sp. C191
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3860015)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3860015)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2017) Molecular & Cell Biology, University of
            Conn., 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHNZ00000000.1.
            The Halorubrum sp. C191 whole genome shotgun (WGS) project has the
            project accession NZ_NHNZ00000000.  This version of the project
            (01) has the accession number NZ_NHNZ01000000, and consists of
            sequences NHNZ01000001-NHNZ01000232.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 36x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002727095.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:28:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,003
            CDSs (total)                      :: 3,937
            Genes (coding)                    :: 3,737
            CDSs (with protein)               :: 3,737
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 200
            CDSs (without protein)            :: 200
            Pseudo Genes (ambiguous residues) :: 0 of 200
            Pseudo Genes (frameshifted)       :: 44 of 200
            Pseudo Genes (incomplete)         :: 161 of 200
            Pseudo Genes (internal stop)      :: 28 of 200
            Pseudo Genes (multiple problems)  :: 30 of 200
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3860015
                     /organism="Halorubrum sp. C191"
                     /mol_type="genomic DNA"
                     /strain="C191"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:1383842"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHNZ01000001-NHNZ01000232
WGS_SCAFLD  NZ_NHNZ01000001-NZ_NHNZ01000232
//
LOCUS       NZ_NHPB01000000      3545305 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum ezzemoulense strain G37, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NHPB00000000
VERSION     NZ_NHPB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716043
            Assembly: GCF_002252835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3545305)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3545305)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHPB00000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_NHPB00000000.  This version of the project
            (01) has the accession number NZ_NHPB01000000, and consists of
            sequences NHPB01000001-NHPB01000120.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 92x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252835.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:48:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,641
            CDSs (total)                      :: 3,587
            Genes (coding)                    :: 3,451
            CDSs (with protein)               :: 3,451
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 36 of 136
            Pseudo Genes (incomplete)         :: 104 of 136
            Pseudo Genes (internal stop)      :: 22 of 136
            Pseudo Genes (multiple problems)  :: 24 of 136
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545305
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="G37"
                     /isolation_source="endorheic salt-lake"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHPB01000001-NHPB01000120
WGS_SCAFLD  NZ_NHPB01000001-NZ_NHPB01000120
//
LOCUS       NZ_NHPJ01000000      3319038 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum halodurans strain Cb34, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NHPJ00000000
VERSION     NZ_NHPJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716035
            Assembly: GCF_002252985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum halodurans
  ORGANISM  Halorubrum halodurans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3319038)
  AUTHORS   Fullmer,M.S., Soucy,S.M., Swithers,K.S., Makkay,A.M., Wheeler,R.,
            Ventosa,A., Gogarten,J.P. and Papke,R.T.
  TITLE     Population and genomic analysis of the genus Halorubrum
  JOURNAL   Front Microbiol 5, 140 (2014)
   PUBMED   24782836
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3319038)
  AUTHORS   Fullmer,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2017) Molecular & Cell Biology, University of
            Connecticut, 91 N Eagleville, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHPJ00000000.1.
            The Halorubrum halodurans whole genome shotgun (WGS) project has
            the project accession NZ_NHPJ00000000.  This version of the project
            (01) has the accession number NZ_NHPJ01000000, and consists of
            sequences NHPJ01000001-NHPJ01000143.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 6.0.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 47x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252985.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:08:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,421
            CDSs (total)                      :: 3,359
            Genes (coding)                    :: 3,249
            CDSs (with protein)               :: 3,249
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 25 of 110
            Pseudo Genes (incomplete)         :: 92 of 110
            Pseudo Genes (internal stop)      :: 5 of 110
            Pseudo Genes (multiple problems)  :: 11 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3319038
                     /organism="Halorubrum halodurans"
                     /mol_type="genomic DNA"
                     /strain="Cb34"
                     /isolation_source="endorheic salt-lake"
                     /type_material="type strain of Halorubrum halodurans"
                     /db_xref="taxon:1383851"
                     /geo_loc_name="Iran: Aran-Bidgol"
                     /collection_date="2009"
WGS         NHPJ01000001-NHPJ01000143
WGS_SCAFLD  NZ_NHPJ01000001-NZ_NHPJ01000143
//
LOCUS       NZ_QKNY01000000      2468382 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halonotius aquaticus strain F13-13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QKNY00000000
VERSION     NZ_QKNY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09370719
            Assembly: GCF_003605575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halonotius aquaticus
  ORGANISM  Halonotius aquaticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halonotius.
REFERENCE   1  (bases 1 to 2468382)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halonotius sp. F13-13 a new haloarchaeeon isolated from a solar
            saltern from Isla Cristina, Huelva, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2468382)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2018) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QKNY00000000.1.
            The Halonotius aquaticus whole genome shotgun (WGS) project has the
            project accession NZ_QKNY00000000.  This version of the project
            (01) has the accession number NZ_QKNY01000000, and consists of
            sequences QKNY01000001-QKNY01000018.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet Optimiser v. May-2018
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 496.63x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003605575.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:23:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,594
            CDSs (total)                      :: 2,543
            Genes (coding)                    :: 2,516
            CDSs (with protein)               :: 2,516
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 6 of 27
            Pseudo Genes (incomplete)         :: 23 of 27
            Pseudo Genes (internal stop)      :: 4 of 27
            Pseudo Genes (multiple problems)  :: 4 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468382
                     /organism="Halonotius aquaticus"
                     /mol_type="genomic DNA"
                     /strain="F13-13"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halonotius aquaticus"
                     /db_xref="taxon:2216978"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06-29"
WGS         QKNY01000001-QKNY01000018
WGS_SCAFLD  NZ_QKNY01000001-NZ_QKNY01000018
//
LOCUS       NZ_QMIM01000000      3584929 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. 48-1-W, whole genome shotgun sequencing project.
ACCESSION   NZ_QMIM00000000
VERSION     NZ_QMIM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09489299
            Assembly: GCF_003287355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. 48-1-W
  ORGANISM  Halorubrum sp. 48-1-W
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3584929)
  AUTHORS   Rozanov,A.S., Shipova,A.A., Korzhuk,A.V., Bryanskaya,A.V. and
            Peltek,S.E.
  TITLE     Draft Genome Sequence of Halorubrum sp. Strain 48-1-W from a Saline
            Lake in the Novosibirsk Region, Russia
  JOURNAL   Microbiol Resour Announc 8 (1), e01139-18 (2019)
   PUBMED   30637381
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3584929)
  AUTHORS   Shipova,A.A., Rozanov,A.S., Bryanskaya,A.V. and Peltek,S.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUN-2018) Laboratory of Molecular Biotechnologies,
            The Institute of Cytology and Genetics, Prospekt Lavrentyeva 10,
            Novosibirsk, Novosibirsk Region 630090, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QMIM00000000.1.
            The Halorubrum sp. 48-1-W whole genome shotgun (WGS) project has
            the project accession NZ_QMIM00000000.  This version of the project
            (01) has the accession number NZ_QMIM01000000, and consists of
            sequences QMIM01000001-QMIM01000069.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003287355.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:35:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,580
            CDSs (total)                      :: 3,528
            Genes (coding)                    :: 3,440
            CDSs (with protein)               :: 3,440
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 21 of 88
            Pseudo Genes (incomplete)         :: 72 of 88
            Pseudo Genes (internal stop)      :: 7 of 88
            Pseudo Genes (multiple problems)  :: 12 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3584929
                     /organism="Halorubrum sp. 48-1-W"
                     /mol_type="genomic DNA"
                     /strain="48-1-W"
                     /isolation_source="water sample"
                     /db_xref="taxon:2249761"
                     /geo_loc_name="Russia: Saline Lake, Novosibirsk region"
                     /lat_lon="54.2 N 78.2 E"
                     /collection_date="2009-06-13"
WGS         QMIM01000001-QMIM01000069
WGS_SCAFLD  NZ_QMIM01000001-NZ_QMIM01000069
//
LOCUS       NZ_QPHM01000000      3549098 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloplanus salinus strain JCM 18368, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QPHM00000000
VERSION     NZ_QPHM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09684816
            Assembly: GCF_003336245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus salinus
  ORGANISM  Haloplanus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3549098)
  AUTHORS   Kim,Y.B. and Roh,S.W.
  TITLE     Genome sequences of Haloplanus salinus JCM 18368T
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3549098)
  AUTHORS   Kim,Y.B. and Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2018) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju
            61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPHM00000000.1.
            The Haloplanus salinus whole genome shotgun (WGS) project has the
            project accession NZ_QPHM00000000.  This version of the project
            (01) has the accession number NZ_QPHM01000000, and consists of
            sequences QPHM01000001-QPHM01000004.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 268.92x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003336245.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:56:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,705
            CDSs (total)                      :: 3,636
            Genes (coding)                    :: 3,520
            CDSs (with protein)               :: 3,520
            Genes (RNA)                       :: 69
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 46 of 116
            Pseudo Genes (incomplete)         :: 77 of 116
            Pseudo Genes (internal stop)      :: 12 of 116
            Pseudo Genes (multiple problems)  :: 19 of 116
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3549098
                     /organism="Haloplanus salinus"
                     /mol_type="genomic DNA"
                     /strain="JCM 18368"
                     /isolation_source="crystallizer pond of Yinggehai marine
                     solar saltern"
                     /type_material="type strain of Haloplanus salinus"
                     /db_xref="taxon:1126245"
                     /geo_loc_name="China: Hainan Province, near Sanya city"
                     /lat_lon="18.531111 N 108.727500 E"
WGS         QPHM01000001-QPHM01000004
WGS_SCAFLD  NZ_QPHM01000001-NZ_QPHM01000004
//
LOCUS       NZ_QQRR01000000      3473342 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloprofundus halophilus strain NK23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QQRR00000000
VERSION     NZ_QQRR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09711351
            Assembly: GCF_003439925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloprofundus halophilus
  ORGANISM  Haloprofundus halophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloprofundus.
REFERENCE   1  (bases 1 to 3473342)
  AUTHORS   Xu,Q.
  TITLE     Haloprofundus halophilus sp. nov., isolated from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3473342)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2018) Food and Biological Engineering, Jiangsu
            University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QQRR00000000.1.
            The Haloprofundus halophilus whole genome shotgun (WGS) project has
            the project accession NZ_QQRR00000000.  This version of the project
            (01) has the accession number NZ_QQRR01000000, and consists of
            sequences QQRR01000001-QQRR01000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. JULY-2017
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003439925.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:30:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,559
            CDSs (total)                      :: 3,500
            Genes (coding)                    :: 3,472
            CDSs (with protein)               :: 3,472
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 6 of 28
            Pseudo Genes (incomplete)         :: 23 of 28
            Pseudo Genes (internal stop)      :: 3 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3473342
                     /organism="Haloprofundus halophilus"
                     /mol_type="genomic DNA"
                     /strain="NK23"
                     /isolation_source="inland saline soil"
                     /type_material="type strain of Haloprofundus halophilus"
                     /db_xref="taxon:2283527"
                     /geo_loc_name="China"
                     /collection_date="2014-08-30"
WGS         QQRR01000001-QQRR01000006
WGS_SCAFLD  NZ_QQRR01000001-NZ_QQRR01000006
//
LOCUS       NZ_PSYY01000000      4176203 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-4N, whole genome shotgun sequencing project.
ACCESSION   NZ_PSYY00000000
VERSION     NZ_PSYY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08382974
            Assembly: GCF_003383025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-4N
  ORGANISM  Haloferax sp. Atlit-4N
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4176203)
  AUTHORS   Shalev,Y.
  TITLE     Comparative analysis of surface elements in the genus Haloferax
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4176203)
  AUTHORS   Altman,N. and Uri,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv, Choose A State 69000,
            Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSYY00000000.1.
            The Haloferax sp. Atlit-4N whole genome shotgun (WGS) project has
            the project accession NZ_PSYY00000000.  This version of the project
            (01) has the accession number NZ_PSYY01000000, and consists of
            sequences PSYY01000001-PSYY01000142.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 68x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003383025.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:34:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,229
            CDSs (total)                      :: 4,168
            Genes (coding)                    :: 4,080
            CDSs (with protein)               :: 4,080
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 43 of 88
            Pseudo Genes (incomplete)         :: 66 of 88
            Pseudo Genes (internal stop)      :: 20 of 88
            Pseudo Genes (multiple problems)  :: 36 of 88
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4176203
                     /organism="Haloferax sp. Atlit-4N"
                     /mol_type="genomic DNA"
                     /strain="Atlit-4N"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2077206"
                     /geo_loc_name="Israel: Atlit coast"
                     /collection_date="2012"
WGS         PSYY01000001-PSYY01000142
WGS_SCAFLD  NZ_PSYY01000001-NZ_PSYY01000142
//
LOCUS       NZ_QEQJ01000000      4366214 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-6N, whole genome shotgun sequencing project.
ACCESSION   NZ_QEQJ00000000
VERSION     NZ_QEQJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08382975
            Assembly: GCF_003383195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-6N
  ORGANISM  Haloferax sp. Atlit-6N
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4366214)
  AUTHORS   Shalev,Y. and Gophna,U.
  TITLE     Comparative analysis of surface elements in the genus Haloferax
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4366214)
  AUTHORS   Altman,N. and Uri,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QEQJ00000000.1.
            The Haloferax sp. Atlit-6N whole genome shotgun (WGS) project has
            the project accession NZ_QEQJ00000000.  This version of the project
            (01) has the accession number NZ_QEQJ01000000, and consists of
            sequences QEQJ01000001-QEQJ01000446.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 65x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003383195.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:33:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,680
            CDSs (total)                      :: 4,614
            Genes (coding)                    :: 4,403
            CDSs (with protein)               :: 4,403
            Genes (RNA)                       :: 66
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 211
            CDSs (without protein)            :: 211
            Pseudo Genes (ambiguous residues) :: 0 of 211
            Pseudo Genes (frameshifted)       :: 21 of 211
            Pseudo Genes (incomplete)         :: 194 of 211
            Pseudo Genes (internal stop)      :: 11 of 211
            Pseudo Genes (multiple problems)  :: 15 of 211
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4366214
                     /organism="Haloferax sp. Atlit-6N"
                     /mol_type="genomic DNA"
                     /strain="Atlit-6N"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2077205"
                     /geo_loc_name="Israel: Atlit coast"
                     /collection_date="2012"
WGS         QEQJ01000001-QEQJ01000446
WGS_SCAFLD  NZ_QEQJ01000001-NZ_QEQJ01000446
//
LOCUS       NZ_PSYS01000000      3813557 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-47N, whole genome shotgun sequencing project.
ACCESSION   NZ_PSYS00000000
VERSION     NZ_PSYS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08382981
            Assembly: GCF_003383065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-47N
  ORGANISM  Haloferax sp. Atlit-47N
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3813557)
  AUTHORS   Shalev,Y. and Gophna,U.
  TITLE     Comparative analysis of surface elements in the genus Haloferax
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3813557)
  AUTHORS   Altman,N. and Uri,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv, Choose A State 69000,
            Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSYS00000000.1.
            The Haloferax sp. Atlit-47N whole genome shotgun (WGS) project has
            the project accession NZ_PSYS00000000.  This version of the project
            (01) has the accession number NZ_PSYS01000000, and consists of
            sequences PSYS01000001-PSYS01000116.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003383065.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:40:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,940
            CDSs (total)                      :: 3,880
            Genes (coding)                    :: 3,800
            CDSs (with protein)               :: 3,800
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 20 of 80
            Pseudo Genes (incomplete)         :: 63 of 80
            Pseudo Genes (internal stop)      :: 7 of 80
            Pseudo Genes (multiple problems)  :: 9 of 80
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813557
                     /organism="Haloferax sp. Atlit-47N"
                     /mol_type="genomic DNA"
                     /strain="Atlit-47N"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2077199"
                     /geo_loc_name="Israel: Michmoret coast"
                     /collection_date="2012"
WGS         PSYS01000001-PSYS01000116
WGS_SCAFLD  NZ_PSYS01000001-NZ_PSYS01000116
//
LOCUS       NZ_RAPO01000000      4865221 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halopiger aswanensis strain DSM 13151, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RAPO00000000
VERSION     NZ_RAPO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488555
            Assembly: GCF_003610195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopiger aswanensis
  ORGANISM  Halopiger aswanensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halopiger.
REFERENCE   1  (bases 1 to 4865221)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase
            II (KMG-II): from individual species to whole genera
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4865221)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-SEP-2018) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RAPO00000000.1.
            The Halopiger aswanensis whole genome shotgun (WGS) project has the
            project accession NZ_RAPO00000000.  This version of the project
            (01) has the accession number NZ_RAPO01000000, and consists of
            sequences RAPO01000001-RAPO01000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: AllPaths v. r46652
            Expected Final Version :: No
            Genome Coverage        :: 229.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003610195.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:42:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,712
            CDSs (total)                      :: 4,658
            Genes (coding)                    :: 4,580
            CDSs (with protein)               :: 4,580
            Genes (RNA)                       :: 54
            rRNAs                             :: 4 (5S)
            complete rRNAs                    :: 4 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 23 of 78
            Pseudo Genes (incomplete)         :: 61 of 78
            Pseudo Genes (internal stop)      :: 13 of 78
            Pseudo Genes (multiple problems)  :: 17 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4865221
                     /organism="Halopiger aswanensis"
                     /mol_type="genomic DNA"
                     /strain="DSM 13151"
                     /culture_collection="DSM:13151"
                     /type_material="type strain of Halopiger aswanensis"
                     /db_xref="taxon:148449"
WGS         RAPO01000001-RAPO01000017
WGS_SCAFLD  NZ_RAPO01000001-NZ_RAPO01000017
//
LOCUS       NZ_QQST01000000      3872704 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halopelagius longus strain BC12-B1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QQST00000000
VERSION     NZ_QQST00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09717241
            Assembly: GCF_003351065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopelagius longus
  ORGANISM  Halopelagius longus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 3872704)
  AUTHORS   Zhang,X.
  TITLE     Genome sequence of extremly halophilic archaeon Halopelagius longus
            strain BC12-B1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3872704)
  AUTHORS   Zhang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2018) College of Life Science, Zhejiang
            University, Yuhangtang Rd, Hangzhou 310058, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QQST00000000.1.
            The Halopelagius longus whole genome shotgun (WGS) project has the
            project accession NZ_QQST00000000.  This version of the project
            (01) has the accession number NZ_QQST01000000, and consists of
            sequences QQST01000001-QQST01000008.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003351065.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:48:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,891
            CDSs (total)                      :: 3,833
            Genes (coding)                    :: 3,775
            CDSs (with protein)               :: 3,775
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 6 of 58
            Pseudo Genes (incomplete)         :: 52 of 58
            Pseudo Genes (internal stop)      :: 2 of 58
            Pseudo Genes (multiple problems)  :: 2 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3872704
                     /organism="Halopelagius longus"
                     /mol_type="genomic DNA"
                     /strain="BC12-B1"
                     /isolation_source="salt mine"
                     /type_material="type strain of Halopelagius longus"
                     /db_xref="taxon:1236180"
                     /geo_loc_name="China: Xinjiang Province"
                     /collection_date="2010-06-10"
WGS         QQST01000001-QQST01000008
WGS_SCAFLD  NZ_QQST01000001-NZ_QQST01000008
//
LOCUS       NZ_QPMJ01000000      4372177 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus rarus strain TBN4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QPMJ00000000
VERSION     NZ_QPMJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09702118
            Assembly: GCF_003369835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus rarus
  ORGANISM  Halorussus rarus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4372177)
  AUTHORS   Han,D.
  TITLE     Genome sequence of Halorussus rarus TBN4 isolated from a marine
            solar saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4372177)
  AUTHORS   Han,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2018) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPMJ00000000.1.
            The Halorussus rarus whole genome shotgun (WGS) project has the
            project accession NZ_QPMJ00000000.  This version of the project
            (01) has the accession number NZ_QPMJ01000000, and consists of
            sequences QPMJ01000001-QPMJ01000007.
            Bacteria and source DNA available from HengLin Cui, School of Food
            and Biological EngineeringJiangsu Universit.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. June-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003369835.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:52:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,396
            CDSs (total)                      :: 4,339
            Genes (coding)                    :: 4,311
            CDSs (with protein)               :: 4,311
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 10 of 28
            Pseudo Genes (incomplete)         :: 21 of 28
            Pseudo Genes (internal stop)      :: 2 of 28
            Pseudo Genes (multiple problems)  :: 5 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4372177
                     /organism="Halorussus rarus"
                     /mol_type="genomic DNA"
                     /strain="TBN4"
                     /isolation_source="marine solar saltern"
                     /type_material="type strain of Halorussus rarus"
                     /db_xref="taxon:660515"
                     /geo_loc_name="China"
                     /collection_date="2008"
WGS         QPMJ01000001-QPMJ01000007
WGS_SCAFLD  NZ_QPMJ01000001-NZ_QPMJ01000007
//
LOCUS       NZ_QLVG01000000      3838095 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus litoreus strain HD8-51, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QLVG00000000
VERSION     NZ_QLVG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09463971
            Assembly: GCF_003382685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus litoreus
  ORGANISM  Halorussus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 3838095)
  AUTHORS   Cui,H.-L.
  TITLE     Halophilic archaea isolated from salted brown alga Laminaria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3838095)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2018) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QLVG00000000.1.
            The Halorussus litoreus whole genome shotgun (WGS) project has the
            project accession NZ_QLVG00000000.  This version of the project
            (01) has the accession number NZ_QLVG01000000, and consists of
            sequences QLVG01000001-QLVG01000097.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. MAY-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003382685.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:58:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,796
            CDSs (total)                      :: 3,745
            Genes (coding)                    :: 3,679
            CDSs (with protein)               :: 3,679
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 16 of 66
            Pseudo Genes (incomplete)         :: 54 of 66
            Pseudo Genes (internal stop)      :: 4 of 66
            Pseudo Genes (multiple problems)  :: 6 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3838095
                     /organism="Halorussus litoreus"
                     /mol_type="genomic DNA"
                     /strain="HD8-51"
                     /isolation_source="isolated from salted brown alga
                     Laminaria"
                     /type_material="type strain of Halorussus litoreus"
                     /db_xref="taxon:1710536"
                     /geo_loc_name="China"
                     /collection_date="2015"
WGS         QLVG01000001-QLVG01000097
WGS_SCAFLD  NZ_KZ859503-NZ_KZ859520
WGS_SCAFLD  NZ_QLVG01000001-NZ_QLVG01000002
WGS_SCAFLD  NZ_QLVG01000017
WGS_SCAFLD  NZ_QLVG01000031-NZ_QLVG01000033
WGS_SCAFLD  NZ_QLVG01000037-NZ_QLVG01000038
WGS_SCAFLD  NZ_QLVG01000041
WGS_SCAFLD  NZ_QLVG01000044-NZ_QLVG01000052
WGS_SCAFLD  NZ_QLVG01000055-NZ_QLVG01000057
WGS_SCAFLD  NZ_QLVG01000060-NZ_QLVG01000066
WGS_SCAFLD  NZ_QLVG01000069-NZ_QLVG01000097
//
LOCUS       NZ_RCIH01000000      3735525 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halostella salina strain CBA1114, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RCIH00000000
VERSION     NZ_RCIH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10220147
            Assembly: GCF_003675855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostella salina
  ORGANISM  Halostella salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae; Halostella.
REFERENCE   1  (bases 1 to 3735525)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2018) Food and Biological Engineering, Jiangsu
            University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RCIH00000000.1.
            The Halostella salina whole genome shotgun (WGS) project has the
            project accession NZ_RCIH00000000.  This version of the project
            (01) has the accession number NZ_RCIH01000000, and consists of
            sequences RCIH01000001-RCIH01000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. September-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003675855.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:57:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,900
            CDSs (total)                      :: 3,842
            Genes (coding)                    :: 3,788
            CDSs (with protein)               :: 3,788
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 16 of 54
            Pseudo Genes (incomplete)         :: 35 of 54
            Pseudo Genes (internal stop)      :: 13 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735525
                     /organism="Halostella salina"
                     /mol_type="genomic DNA"
                     /strain="CBA1114"
                     /isolation_source="solar salt"
                     /type_material="type strain of Halostella salina"
                     /db_xref="taxon:1547897"
                     /geo_loc_name="South Korea"
                     /collection_date="2014-06-23"
WGS         RCIH01000001-RCIH01000017
WGS_SCAFLD  NZ_RCIH01000001-NZ_RCIH01000017
//
LOCUS       NZ_RJJC01000000      2661022 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halosegnis longus strain CBA1133, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RJJC00000000
VERSION     NZ_RJJC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10386455
            Assembly: GCF_003722095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosegnis longus
  ORGANISM  Halosegnis longus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1  (bases 1 to 2661022)
  AUTHORS   Roh,S.W. and Cha,I.-T.
  TITLE     Genome sequences of Natronomonas sp. CBA1133
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2661022)
  AUTHORS   Roh,S.W. and Cha,I.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2018) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RJJC00000000.1.
            The Halosegnis longus whole genome shotgun (WGS) project has the
            project accession NZ_RJJC00000000.  This version of the project
            (01) has the accession number NZ_RJJC01000000, and consists of
            sequences RJJC01000001-RJJC01000003.
            Bacteria and source DNA available from Seong Woon Roh.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 348.08x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003722095.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:54:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,917
            CDSs (total)                      :: 2,867
            Genes (coding)                    :: 2,702
            CDSs (with protein)               :: 2,702
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 126 of 165
            Pseudo Genes (incomplete)         :: 45 of 165
            Pseudo Genes (internal stop)      :: 4 of 165
            Pseudo Genes (multiple problems)  :: 9 of 165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661022
                     /organism="Halosegnis longus"
                     /mol_type="genomic DNA"
                     /strain="CBA1133"
                     /isolation_source="Solar salt"
                     /type_material="type strain of Sala cibi"
                     /db_xref="taxon:2216012"
WGS         RJJC01000001-RJJC01000003
WGS_SCAFLD  NZ_RJJC01000001-NZ_RJJC01000003
//
LOCUS       NZ_QPLV01000000      3307149 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Atlit-8R, whole genome shotgun sequencing project.
ACCESSION   NZ_QPLV00000000
VERSION     NZ_QPLV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668316
            Assembly: GCF_003666025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Atlit-8R
  ORGANISM  Halorubrum sp. Atlit-8R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3307149)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3307149)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPLV00000000.1.
            The Halorubrum sp. Atlit-8R whole genome shotgun (WGS) project has
            the project accession NZ_QPLV00000000.  This version of the project
            (01) has the accession number NZ_QPLV01000000, and consists of
            sequences QPLV01000001-QPLV01000091.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 119x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003666025.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:00:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,423
            CDSs (total)                      :: 3,368
            Genes (coding)                    :: 3,310
            CDSs (with protein)               :: 3,310
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 12 of 58
            Pseudo Genes (incomplete)         :: 52 of 58
            Pseudo Genes (internal stop)      :: 6 of 58
            Pseudo Genes (multiple problems)  :: 12 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307149
                     /organism="Halorubrum sp. Atlit-8R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-8R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282126"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QPLV01000001-QPLV01000091
WGS_SCAFLD  NZ_QPLV01000001-NZ_QPLV01000091
//
LOCUS       NZ_PSYT01000000      3884197 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. Atlit-24N, whole genome shotgun sequencing project.
ACCESSION   NZ_PSYT00000000
VERSION     NZ_PSYT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08382980
            Assembly: GCF_003383005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. Atlit-24N
  ORGANISM  Haloferax sp. Atlit-24N
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3884197)
  AUTHORS   Shalev,Y.
  TITLE     Comparative analysis of surface elements in the genus Haloferax
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3884197)
  AUTHORS   Altman,N. and Uri,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv, Choose A State 69000,
            Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSYT00000000.1.
            The Haloferax sp. Atlit-24N whole genome shotgun (WGS) project has
            the project accession NZ_PSYT00000000.  This version of the project
            (01) has the accession number NZ_PSYT01000000, and consists of
            sequences PSYT01000001-PSYT01000058.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 82x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003383005.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:42:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,966
            CDSs (total)                      :: 3,906
            Genes (coding)                    :: 3,835
            CDSs (with protein)               :: 3,835
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 23 of 71
            Pseudo Genes (incomplete)         :: 50 of 71
            Pseudo Genes (internal stop)      :: 10 of 71
            Pseudo Genes (multiple problems)  :: 11 of 71
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3884197
                     /organism="Haloferax sp. Atlit-24N"
                     /mol_type="genomic DNA"
                     /strain="Atlit-24N"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2077200"
                     /geo_loc_name="Israel: Michmoret coast"
                     /collection_date="2012"
WGS         PSYT01000001-PSYT01000058
WGS_SCAFLD  NZ_PSYT01000001-NZ_PSYT01000058
//
LOCUS       NZ_QPLT01000000      4140427 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Atlit-26R, whole genome shotgun sequencing project.
ACCESSION   NZ_QPLT00000000
VERSION     NZ_QPLT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668318
            Assembly: GCF_003666015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Atlit-26R
  ORGANISM  Halorubrum sp. Atlit-26R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 4140427)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4140427)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPLT00000000.1.
            The Halorubrum sp. Atlit-26R whole genome shotgun (WGS) project has
            the project accession NZ_QPLT00000000.  This version of the project
            (01) has the accession number NZ_QPLT01000000, and consists of
            sequences QPLT01000001-QPLT01000574.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 85x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003666015.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:00:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,493
            CDSs (total)                      :: 4,427
            Genes (coding)                    :: 4,099
            CDSs (with protein)               :: 4,099
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 328
            CDSs (without protein)            :: 328
            Pseudo Genes (ambiguous residues) :: 0 of 328
            Pseudo Genes (frameshifted)       :: 29 of 328
            Pseudo Genes (incomplete)         :: 308 of 328
            Pseudo Genes (internal stop)      :: 16 of 328
            Pseudo Genes (multiple problems)  :: 21 of 328
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4140427
                     /organism="Halorubrum sp. Atlit-26R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-26R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282128"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QPLT01000001-QPLT01000574
WGS_SCAFLD  NZ_QPLT01000001-NZ_QPLT01000574
//
LOCUS       NZ_REFS01000000      3505900 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloplanus aerogenes strain CGMCC 1.10124, whole genome shotgun
            sequencing project.
ACCESSION   NZ_REFS00000000
VERSION     NZ_REFS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488064
            Assembly: GCF_003688715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus aerogenes
  ORGANISM  Haloplanus aerogenes
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3505900)
  AUTHORS   Whitman,W.B., Woyke,T., Klenk,H.P., Zhou,Y., Lilburn,T.G.,
            Beck,B.J., De Vos,P., Vandamme,P., Eisen,J.A., Garrity,G.,
            Hugenholtz,P. and Kyrpides,N.C.
  TITLE     Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase
            III: the genomes of soil and plant-associated and newly described
            type strains
  JOURNAL   Stand Genomic Sci 10, 26 (2015)
   PUBMED   26203337
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3505900)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2018) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            REFS00000000.1.
            The Haloplanus aerogenes whole genome shotgun (WGS) project has the
            project accession NZ_REFS00000000.  This version of the project
            (01) has the accession number NZ_REFS01000000, and consists of
            sequences REFS01000001-REFS01000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: AllPaths v. r46652
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 281.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003688715.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:03:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,687
            CDSs (total)                      :: 3,623
            Genes (coding)                    :: 3,573
            CDSs (with protein)               :: 3,573
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 14 of 50
            Pseudo Genes (incomplete)         :: 40 of 50
            Pseudo Genes (internal stop)      :: 4 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3505900
                     /organism="Haloplanus aerogenes"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10124"
                     /type_material="type strain of Haloplanus aerogenes"
                     /db_xref="taxon:660522"
WGS         REFS01000001-REFS01000016
WGS_SCAFLD  NZ_REFS01000001-NZ_REFS01000016
//
LOCUS       NZ_LMVN01000000      1928201 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanosphaera cuniculi strain 1R-7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LMVN00000000
VERSION     NZ_LMVN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04229037
            Assembly: GCF_002287195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosphaera cuniculi
  ORGANISM  Methanosphaera cuniculi
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1928201)
  AUTHORS   Gilmore,S.P., Henske,J.K., Sexton,J.A., Solomon,K.V., Seppala,S.,
            Yoo,J.I., Huyett,L.M., Pressman,A., Cogan,J.Z., Kivenson,V.,
            Peng,X., Tan,Y., Valentine,D.L. and O'Malley,M.A.
  TITLE     Genomic analysis of methanogenic archaea reveals a shift towards
            energy conservation
  JOURNAL   BMC Genomics 18 (1), 639 (2017)
   PUBMED   28826405
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928201)
  AUTHORS   Gilmore,S.P., Henske,J.K., Sexton,J.A., Solomon,K.V., Yoo,J.,
            Huyette,L.M., Pressman,A., Cogan,Z., Tan,Y., Valentine,D.L. and
            O'Malley,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2015) Chemical Engineering, University of
            California Santa Barbara, 3357 Engineering II, Santa Barbara, CA
            93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LMVN00000000.1.
            The Methanosphaera cuniculi whole genome shotgun (WGS) project has
            the project accession NZ_LMVN00000000.  This version of the project
            (01) has the accession number NZ_LMVN01000000, and consists of
            sequences LMVN01000001-LMVN01000029.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. JUN-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 102.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002287195.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:02:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,689
            CDSs (total)                      :: 1,651
            Genes (coding)                    :: 1,638
            CDSs (with protein)               :: 1,638
            Genes (RNA)                       :: 38
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 2 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 1 of 13
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928201
                     /organism="Methanosphaera cuniculi"
                     /mol_type="genomic DNA"
                     /strain="1R-7"
                     /type_material="type strain of Methanosphaera cuniculi"
                     /db_xref="taxon:1077256"
                     /geo_loc_name="Italy"
WGS         LMVN01000001-LMVN01000029
WGS_SCAFLD  NZ_LMVN01000001-NZ_LMVN01000029
//
LOCUS       NZ_RCDI01000000      4117004 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halostella limicola strain LT12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RCDI00000000
VERSION     NZ_RCDI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10187727
            Assembly: GCF_003675875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostella limicola
  ORGANISM  Halostella limicola
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae; Halostella.
REFERENCE   1  (bases 1 to 4117004)
  AUTHORS   Xu,Q.
  TITLE     Haloprofundus halophilus sp. nov., isolated from the saline soil of
            Tarim Basin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4117004)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Food and Biological Engineering, Jiangsu
            University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RCDI00000000.1.
            The Halostella limicola whole genome shotgun (WGS) project has the
            project accession NZ_RCDI00000000.  This version of the project
            (01) has the accession number NZ_RCDI01000000, and consists of
            sequences RCDI01000001-RCDI01000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. September-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003675875.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:05:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,159
            Genes (coding)                    :: 4,113
            CDSs (with protein)               :: 4,113
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 18 of 46
            Pseudo Genes (incomplete)         :: 33 of 46
            Pseudo Genes (internal stop)      :: 7 of 46
            Pseudo Genes (multiple problems)  :: 11 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117004
                     /organism="Halostella limicola"
                     /mol_type="genomic DNA"
                     /strain="LT12"
                     /isolation_source="inland saline soil"
                     /type_material="type strain of Halostella limicola"
                     /db_xref="taxon:2448456"
                     /geo_loc_name="China: XinJiang"
                     /collection_date="2013-10"
WGS         RCDI01000001-RCDI01000010
WGS_SCAFLD  NZ_ML014752
WGS_SCAFLD  NZ_RCDI01000001-NZ_RCDI01000004
WGS_SCAFLD  NZ_RCDI01000007-NZ_RCDI01000010
//
LOCUS       NZ_RJJW01000000      3715460 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. CSM-61, whole genome shotgun sequencing project.
ACCESSION   NZ_RJJW00000000
VERSION     NZ_RJJW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10346711
            Assembly: GCF_003781945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. CSM-61
  ORGANISM  Halorubrum sp. CSM-61
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3715460)
  AUTHORS   Megaw,J. and Gilmore,B.F.
  TITLE     Draft genome sequence of Halorubrum sp. CSM-61, an extremely
            halophilic archaeon isolated from a Triassic salt mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3715460)
  AUTHORS   Megaw,J. and Gilmore,B.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-NOV-2018) School of Pharmacy, Queen's University
            Belfast, 97 Lisburn Road, Belfast, Antrim BT9 7BL, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RJJW00000000.1.
            The Halorubrum sp. CSM-61 whole genome shotgun (WGS) project has
            the project accession NZ_RJJW00000000.  This version of the project
            (01) has the accession number NZ_RJJW01000000, and consists of
            sequences RJJW01000001-RJJW01000024.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: DNAStar NGen v. 2014
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003781945.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:40:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,690
            CDSs (total)                      :: 3,635
            Genes (coding)                    :: 3,566
            CDSs (with protein)               :: 3,566
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 19 of 69
            Pseudo Genes (incomplete)         :: 56 of 69
            Pseudo Genes (internal stop)      :: 10 of 69
            Pseudo Genes (multiple problems)  :: 14 of 69
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3715460
                     /organism="Halorubrum sp. CSM-61"
                     /mol_type="genomic DNA"
                     /strain="CSM-61"
                     /isolation_source="Brine"
                     /db_xref="taxon:2485838"
                     /geo_loc_name="United Kingdom: Carrickfergus"
                     /collection_date="2014"
WGS         RJJW01000001-RJJW01000024
WGS_SCAFLD  NZ_RJJW01000001-NZ_RJJW01000024
//
LOCUS       NZ_QWGG01000000      5072893 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halosimplex salinum strain YPL4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QWGG00000000
VERSION     NZ_QWGG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09925649
            Assembly: GCF_003730195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosimplex salinum
  ORGANISM  Halosimplex salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halosimplex.
REFERENCE   1  (bases 1 to 5072893)
  AUTHORS   Cui,H.L.
  TITLE     Halosimplex sp. YPL4, isolated from solar salterns and salt lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5072893)
  AUTHORS   Cui,H.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2018) Food and Biologicial Engineering, Jiangsu
            Universiry, Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QWGG00000000.1.
            The Halosimplex salinum whole genome shotgun (WGS) project has the
            project accession NZ_QWGG00000000.  This version of the project
            (01) has the accession number NZ_QWGG01000000, and consists of
            sequences QWGG01000001-QWGG01000028.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. AUGUST-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003730195.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:42:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,947
            CDSs (total)                      :: 4,892
            Genes (coding)                    :: 4,839
            CDSs (with protein)               :: 4,839
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 3 of 53
            Pseudo Genes (incomplete)         :: 48 of 53
            Pseudo Genes (internal stop)      :: 7 of 53
            Pseudo Genes (multiple problems)  :: 5 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5072893
                     /organism="Halosimplex salinum"
                     /mol_type="genomic DNA"
                     /strain="YPL4"
                     /isolation_source="Yunnan"
                     /type_material="type strain of Halosimplex salinum"
                     /db_xref="taxon:1710538"
                     /geo_loc_name="China: Yunnan Province"
                     /collection_date="2013-09-30"
WGS         QWGG01000001-QWGG01000028
WGS_SCAFLD  NZ_QWGG01000001-NZ_QWGG01000028
//
LOCUS       NZ_OBDR01000000      1940298 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus euhalobius strain WG-1MB, whole genome shotgun
            sequencing project.
ACCESSION   NZ_OBDR00000000
VERSION     NZ_OBDR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06295989
            Assembly: GCF_900215215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus euhalobius
  ORGANISM  Methanohalophilus euhalobius
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            OBDR00000000.1.
            The Methanohalophilus euhalobius whole genome shotgun (WGS) project
            has the project accession NZ_OBDR00000000.  This version of the
            project (01) has the accession number NZ_OBDR01000000, and consists
            of sequences OBDR01000001-OBDR01000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900215215.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:05:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,120
            CDSs (total)                      :: 2,065
            Genes (coding)                    :: 2,016
            CDSs (with protein)               :: 2,016
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 12 of 49
            Pseudo Genes (incomplete)         :: 29 of 49
            Pseudo Genes (internal stop)      :: 19 of 49
            Pseudo Genes (multiple problems)  :: 9 of 49
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940298
                     /organism="Methanohalophilus euhalobius"
                     /mol_type="genomic DNA"
                     /strain="WG-1MB"
                     /db_xref="taxon:51203"
                     /geo_loc_name="USA: Ohio"
                     /lat_lon="40.1780 N 81.0730 W"
WGS         OBDR01000001-OBDR01000027
WGS_SCAFLD  NZ_OBDR01000001-NZ_OBDR01000027
//
LOCUS       NZ_LMVP01000000      5088600 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanosarcina spelaei strain MC-15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LMVP00000000
VERSION     NZ_LMVP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04229036
            Assembly: GCF_002287235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina spelaei
  ORGANISM  Methanosarcina spelaei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 5088600)
  AUTHORS   Gilmore,S.P., Henske,J.K., Sexton,J.A., Solomon,K.V., Seppala,S.,
            Yoo,J.I., Huyett,L.M., Pressman,A., Cogan,J.Z., Kivenson,V.,
            Peng,X., Tan,Y., Valentine,D.L. and O'Malley,M.A.
  TITLE     Genomic analysis of methanogenic archaea reveals a shift towards
            energy conservation
  JOURNAL   BMC Genomics 18 (1), 639 (2017)
   PUBMED   28826405
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5088600)
  AUTHORS   Gilmore,S.P., Henske,J.K., Sexton,J.A., Solomon,K.V., Yoo,J.,
            Huyett,L.M., Pressman,A., Cogan,Z., Tan,Y., Valentine,D.L. and
            O'Malley,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2015) Chemical Engineering, University of
            California Santa Barbara, 3357 Engineering II, Santa Barbara, CA
            93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LMVP00000000.1.
            The Methanosarcina spelaei whole genome shotgun (WGS) project has
            the project accession NZ_LMVP00000000.  This version of the project
            (01) has the accession number NZ_LMVP01000000, and consists of
            sequences LMVP01000001-LMVP01000559.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. JUN-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 49.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002287235.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:14:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,408
            CDSs (total)                      :: 4,344
            Genes (coding)                    :: 4,090
            CDSs (with protein)               :: 4,090
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 254
            CDSs (without protein)            :: 254
            Pseudo Genes (ambiguous residues) :: 0 of 254
            Pseudo Genes (frameshifted)       :: 49 of 254
            Pseudo Genes (incomplete)         :: 217 of 254
            Pseudo Genes (internal stop)      :: 37 of 254
            Pseudo Genes (multiple problems)  :: 40 of 254
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5088600
                     /organism="Methanosarcina spelaei"
                     /mol_type="genomic DNA"
                     /strain="MC-15"
                     /type_material="type strain of Methanosarcina spelaei"
                     /db_xref="taxon:1036679"
                     /geo_loc_name="Romania"
WGS         LMVP01000001-LMVP01000559
WGS_SCAFLD  NZ_LMVP01000001-NZ_LMVP01000559
//
LOCUS       NZ_PIZH01000000      2617107 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanoregula sp. isolate PD_MW2_B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PIZH00000000
VERSION     NZ_PIZH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08132988
            Assembly: GCF_002835825.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (aquifer metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2617107)
  AUTHORS   Lipus,D., Gulliver,D. and Ross,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2017) Geomicrobiology, National Energy Technology
            Laboratory, 626 Cochrans Mill Rd, Pittsburgh, PA 15236, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PIZH00000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_PIZH00000000.  This version of the project
            (01) has the accession number NZ_PIZH01000000, and consists of
            sequences PIZH01000001-PIZH01000814.
            Bacteria and source DNA available from Djuna Gulliver, B84-206, 626
            Cochrans Mill Road, Pittsburgh, PA 15236-0940.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.5x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002835825.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 22:38:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,086
            CDSs (total)                      :: 3,043
            Genes (coding)                    :: 2,872
            CDSs (with protein)               :: 2,872
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 171
            CDSs (without protein)            :: 171
            Pseudo Genes (ambiguous residues) :: 0 of 171
            Pseudo Genes (frameshifted)       :: 3 of 171
            Pseudo Genes (incomplete)         :: 160 of 171
            Pseudo Genes (internal stop)      :: 11 of 171
            Pseudo Genes (multiple problems)  :: 3 of 171
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617107
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="PD_MW2_B"
                     /isolation_source="water sample PD_MW2 from CO2 storage
                     reservoir"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA: Chattanoga"
                     /lat_lon="37.31 N 97.44 W"
                     /collection_date="2011-01"
                     /metagenome_source="aquifer metagenome"
                     /metagenomic
WGS         PIZH01000001-PIZH01000814
WGS_SCAFLD  NZ_PIZH01000001-NZ_PIZH01000814
//
LOCUS       NZ_PMZU01000000      1920841 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanoregula sp. isolate fen_34, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PMZU00000000
VERSION     NZ_PMZU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08179087
            Assembly: GCF_003170075.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (peat metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 1920841)
  AUTHORS   Woodcroft,B.J., Singleton,C.M. and Boyd,J.A.
  TITLE     Genome-centric metagenomic insights into microbial carbon
            processing across a permafrost thaw gradient
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1920841)
  AUTHORS   Woodcroft,B.J., Singleton,C.M. and Boyd,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2017) Australian Centre for Ecogenomics, The
            University of Queensland, Level 5, Molecular Biosciences Bldg, The
            University of Queensland, Brisbane, Qld 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PMZU00000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_PMZU00000000.  This version of the project
            (01) has the accession number NZ_PMZU01000000, and consists of
            sequences PMZU01000001-PMZU01000077.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-MAY-2015
            Assembly Method        :: CLC Genomics Workbench v. 4.4
            Assembly Name          :: 20110800_E3D
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.70569615x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003170075.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:23:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,001
            CDSs (total)                      :: 1,951
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 2 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 3 of 17
            Pseudo Genes (incomplete)         :: 13 of 17
            Pseudo Genes (internal stop)      :: 2 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920841
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="fen_34"
                     /isolation_source="permafrost active layer soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Sweden: Stordalen Mire"
                     /lat_lon="68.3534 N 19.0467 E"
                     /altitude="363 m"
                     /collection_date="2011-08-16"
                     /metagenome_source="peat metagenome"
                     /metagenomic
WGS         PMZU01000001-PMZU01000077
WGS_SCAFLD  NZ_PMZU01000001-NZ_PMZU01000077
//
LOCUS       NZ_NGJK01000000      1700671 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanosphaera stadtmanae strain PA5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NGJK00000000
VERSION     NZ_NGJK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06928224
            Assembly: GCF_003265405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosphaera stadtmanae
  ORGANISM  Methanosphaera stadtmanae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1700671)
  AUTHORS   Hoedt,E.C., Volmer,J.G., Parks,D.H., Rosewarne,C.P., Denman,S.E.,
            Mcsweeney,C.S., O Cuiv,P., Hugenholtz,P., Tyson,G.W. and
            Morrison,M.
  TITLE     Host range expansion of the Methanosphaera genus to humans and
            monogastric animals involves recent and extensive reduction in
            genome content
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1700671)
  AUTHORS   Volmer,J.G., Hoedt,E.C., O Cuiv,P. and Morrison,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Kent Street, Brisbane, QLD
            4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NGJK00000000.1.
            The Methanosphaera stadtmanae whole genome shotgun (WGS) project
            has the project accession NZ_NGJK00000000.  This version of the
            project (01) has the accession number NZ_NGJK01000000, and consists
            of sequences NGJK01000001-NGJK01000130.
            Bacteria and source DNA available from PI Mark Morrison; The
            University of Queensland Diamantina Institute.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2017
            Assembly Method        :: CLC genomics workbench v. 10
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 285.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003265405.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:17:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,631
            CDSs (total)                      :: 1,588
            Genes (coding)                    :: 1,569
            CDSs (with protein)               :: 1,569
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 5 of 19
            Pseudo Genes (incomplete)         :: 15 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700671
                     /organism="Methanosphaera stadtmanae"
                     /mol_type="genomic DNA"
                     /strain="PA5"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:2317"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="2015"
WGS         NGJK01000001-NGJK01000130
WGS_SCAFLD  NZ_NGJK01000001-NZ_NGJK01000130
//
LOCUS       NZ_MUZW01000000      1594581 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanosphaera sp. DEW79, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MUZW00000000
VERSION     NZ_MUZW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06283952
            Assembly: GCF_003266085.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera sp. DEW79 (human gut metagenome)
  ORGANISM  Methanosphaera sp. DEW79
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1594581)
  AUTHORS   Hoedt,E.C., Parks,D.H., Rosewarne,C.P., Denman,S.E.,
            Mcsweeney,C.S., Hugenholtz,P., Tyson,G.W. and Morrison,M.
  TITLE     Culture- and metagenomics-based expansion of the genus
            Methanosphaera reveals their evolutionary depth and metabolic
            versatility
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1594581)
  AUTHORS   Karlsson,F.H., Tremaroli,V., Nookaew,I., Bergstrom,G., Behre,C.J.,
            Fagerberg,B., Nielsen,J. and Backhed,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Kent Street, Brisbane, QLD
            4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MUZW00000000.1.
            The Methanosphaera sp. DEW79 whole genome shotgun (WGS) project has
            the project accession NZ_MUZW00000000.  This version of the project
            (01) has the accession number NZ_MUZW01000000, and consists of
            sequences MUZW01000001-MUZW01000070.
            Bacteria and source DNA available from Chalmers University of
            Technology.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAR-2015
            Assembly Method        :: CLC genomics workbench v. 7
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 75.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003266085.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:23:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,529
            CDSs (total)                      :: 1,491
            Genes (coding)                    :: 1,481
            CDSs (with protein)               :: 1,481
            Genes (RNA)                       :: 38
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 4 of 10
            Pseudo Genes (incomplete)         :: 7 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594581
                     /organism="Methanosphaera sp. DEW79"
                     /mol_type="genomic DNA"
                     /isolate="DEW79"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1945576"
                     /environmental_sample
                     /geo_loc_name="Sweden"
                     /collection_date="2015"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         MUZW01000001-MUZW01000070
WGS_SCAFLD  NZ_MUZW01000001-NZ_MUZW01000070
//
LOCUS       NZ_QLOE01000000      1467867 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanothermobacter tenebrarum strain MCM B 1447, whole genome
            shotgun sequencing project.
ACCESSION   NZ_QLOE00000000
VERSION     NZ_QLOE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09435550
            Assembly: GCF_003264935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanothermobacter tenebrarum
  ORGANISM  Methanothermobacter tenebrarum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1467867)
  AUTHORS   Pore,S.D., Dagar,S. and Dhakephalkar,P.K.
  TITLE     Draft genome sequence of hyperthermophilic methanogen
            Methanothermobacter tenebrarum sp. MCM-B 1447
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1467867)
  AUTHORS   Pore,S.D., Dagar,S. and Dhakephalkar,P.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2018) Bioenergy, Agharkar Research Institute, G.G
            Agarkar road, Pune, Maharastra 411004, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QLOE00000000.1.
            The Methanothermobacter tenebrarum whole genome shotgun (WGS)
            project has the project accession NZ_QLOE00000000.  This version of
            the project (01) has the accession number NZ_QLOE01000000, and
            consists of sequences QLOE01000001-QLOE01000020.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 61.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003264935.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:35:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,632
            CDSs (total)                      :: 1,586
            Genes (coding)                    :: 1,577
            CDSs (with protein)               :: 1,577
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 3 of 9
            Pseudo Genes (incomplete)         :: 5 of 9
            Pseudo Genes (internal stop)      :: 2 of 9
            Pseudo Genes (multiple problems)  :: 1 of 9
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1467867
                     /organism="Methanothermobacter tenebrarum"
                     /mol_type="genomic DNA"
                     /strain="MCM B 1447"
                     /isolation_source="formation water"
                     /db_xref="taxon:680118"
                     /geo_loc_name="India: Ahmedabad"
                     /collection_date="2015-12"
WGS         QLOE01000001-QLOE01000020
WGS_SCAFLD  NZ_QLOE01000001-NZ_QLOE01000020
//
LOCUS       NZ_PVBU01000000      1871939 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus euhalobius strain DSM 10369, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PVBU00000000
VERSION     NZ_PVBU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06296050
            Assembly: GCF_002973515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus euhalobius
  ORGANISM  Methanohalophilus euhalobius
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1871939)
  AUTHORS   Wrighton,K.
  TITLE     Subsurface microbial communities from deep shales in Ohio and West
            Virginia, USA
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1871939)
  AUTHORS   Wrighton,K., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2018) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVBU00000000.1.
            The Methanohalophilus euhalobius whole genome shotgun (WGS) project
            has the project accession NZ_PVBU00000000.  This version of the
            project (01) has the accession number NZ_PVBU01000000, and consists
            of sequences PVBU01000001-PVBU01000028.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Expected Final Version :: No
            Genome Coverage        :: 797.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002973515.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 23:54:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,058
            CDSs (total)                      :: 2,005
            Genes (coding)                    :: 1,958
            CDSs (with protein)               :: 1,958
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 12 of 47
            Pseudo Genes (incomplete)         :: 28 of 47
            Pseudo Genes (internal stop)      :: 16 of 47
            Pseudo Genes (multiple problems)  :: 8 of 47
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871939
                     /organism="Methanohalophilus euhalobius"
                     /mol_type="genomic DNA"
                     /strain="DSM 10369"
                     /culture_collection="DSM:10369"
                     /db_xref="taxon:51203"
WGS         PVBU01000001-PVBU01000028
WGS_SCAFLD  NZ_PVBU01000001-NZ_PVBU01000028
//
LOCUS       NZ_QGMZ01000000      3740742 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanospirillum stamsii strain Pt1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QGMZ00000000
VERSION     NZ_QGMZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09236931
            Assembly: GCF_003173335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanospirillum stamsii
  ORGANISM  Methanospirillum stamsii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 3740742)
  AUTHORS   Dueholm,M.S., Nielsen,P.H., Bakmann,L.F. and Otzen,D.E.
  TITLE     Draft genome of Methanospirillum stamsii Pt1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3740742)
  AUTHORS   Dueholm,M.S., Nielsen,P.H., Bakmann,L.F. and Otzen,D.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2018) Department of Chemistry and Biosciences,
            Aalborg University, Fredriks Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QGMZ00000000.1.
            The Methanospirillum stamsii whole genome shotgun (WGS) project has
            the project accession NZ_QGMZ00000000.  This version of the project
            (01) has the accession number NZ_QGMZ01000000, and consists of
            sequences QGMZ01000001-QGMZ01000089.
            Bacteria and source DNA available from DSMZ (DSM-26304).
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-MAY-2018
            Assembly Method        :: CLC NGS Cell v. 9.5.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 42.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003173335.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:20:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,639
            CDSs (total)                      :: 3,581
            Genes (coding)                    :: 3,546
            CDSs (with protein)               :: 3,546
            Genes (RNA)                       :: 58
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 4 of 35
            Pseudo Genes (incomplete)         :: 27 of 35
            Pseudo Genes (internal stop)      :: 6 of 35
            Pseudo Genes (multiple problems)  :: 2 of 35
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3740742
                     /organism="Methanospirillum stamsii"
                     /mol_type="genomic DNA"
                     /strain="Pt1"
                     /isolation_source="soil"
                     /type_material="type strain of Methanospirillum stamsii"
                     /db_xref="taxon:1277351"
                     /geo_loc_name="Netherlands: Wageningen"
                     /lat_lon="51.59 N 5.40 E"
                     /collection_date="2014"
WGS         QGMZ01000001-QGMZ01000089
WGS_SCAFLD  NZ_QGMZ01000001-NZ_QGMZ01000089
//
LOCUS       NZ_QGMY01000000      3743701 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanospirillum lacunae strain Ki8-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QGMY00000000
VERSION     NZ_QGMY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09236929
            Assembly: GCF_003173355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanospirillum lacunae
  ORGANISM  Methanospirillum lacunae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 3743701)
  AUTHORS   Dueholm,M.S., Nielsen,P.H., Bakmann,L.F. and Otzen,D.E.
  TITLE     Draft genome of Methanospirillum lacunae Ki8-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3743701)
  AUTHORS   Dueholm,M.S., Nielsen,P.H., Bakmann,L.F. and Otzen,D.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2018) Department of Chemistry and Biosciences,
            Aalborg University, Fredriks Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QGMY00000000.1.
            The Methanospirillum lacunae whole genome shotgun (WGS) project has
            the project accession NZ_QGMY00000000.  This version of the project
            (01) has the accession number NZ_QGMY01000000, and consists of
            sequences QGMY01000001-QGMY01000025.
            Bacteria and source DNA available from DSMZ (DSM-22751).
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-MAY-2018
            Assembly Method        :: CLC NGS Cell v. 9.5.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003173355.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:19:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,449
            CDSs (total)                      :: 3,395
            Genes (coding)                    :: 3,374
            CDSs (with protein)               :: 3,374
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 3 of 21
            Pseudo Genes (incomplete)         :: 16 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3743701
                     /organism="Methanospirillum lacunae"
                     /mol_type="genomic DNA"
                     /strain="Ki8-1"
                     /isolation_source="soil"
                     /type_material="type strain of Methanospirillum lacunae"
                     /db_xref="taxon:668570"
                     /geo_loc_name="Japan: Chiba, Kisarazu"
                     /lat_lon="35.22 N 139.55 E"
                     /collection_date="2010"
WGS         QGMY01000001-QGMY01000025
WGS_SCAFLD  NZ_QGMY01000001-NZ_QGMY01000025
//
LOCUS       NZ_QREL01000000      1709370 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanothermobacter defluvii strain DSM 7466, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QREL00000000
VERSION     NZ_QREL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08769621
            Assembly: GCF_003385755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanothermobacter defluvii
  ORGANISM  Methanothermobacter defluvii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1709370)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1709370)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JUL-2018) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QREL00000000.1.
            The Methanothermobacter defluvii whole genome shotgun (WGS) project
            has the project accession NZ_QREL00000000.  This version of the
            project (01) has the accession number NZ_QREL01000000, and consists
            of sequences QREL01000001-QREL01000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Expected Final Version :: No
            Genome Coverage        :: 770.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003385755.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:23:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,823
            CDSs (total)                      :: 1,780
            Genes (coding)                    :: 1,768
            CDSs (with protein)               :: 1,768
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 5 of 12
            Pseudo Genes (incomplete)         :: 7 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            Pseudo Genes (multiple problems)  :: 1 of 12
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709370
                     /organism="Methanothermobacter defluvii"
                     /mol_type="genomic DNA"
                     /strain="DSM 7466"
                     /culture_collection="DSM:7466"
                     /type_material="type strain of Methanobacterium defluvii"
                     /db_xref="taxon:49339"
                     /geo_loc_name="Russia"
WGS         QREL01000001-QREL01000005
WGS_SCAFLD  NZ_QREL01000001-NZ_QREL01000005
//
LOCUS       NZ_RDSK01000000      1969036 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus sp. RSK, whole genome shotgun sequencing project.
ACCESSION   NZ_RDSK00000000
VERSION     NZ_RDSK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10345422
            Assembly: GCF_003722075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus sp. RSK
  ORGANISM  Methanohalophilus sp. RSK
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1969036)
  AUTHORS   Guan,Y., Ngugi,D.K. and Stingl,U.
  TITLE     Cultivation of a novel Methanohalophilus strain from Kebrit Deep of
            the Red Sea and a genomic comparison of members of the genus
            Methanohalophilus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1969036)
  AUTHORS   Guan,Y., Ngugi,D.K. and Stingl,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2018) Red Sea Research Center, King Abdullah
            University of Science and Technology (KAUST), 4700 KAUST, Thuwal
            (Jeddah), Western 23955-6900, Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RDSK00000000.1.
            The Methanohalophilus sp. RSK whole genome shotgun (WGS) project
            has the project accession NZ_RDSK00000000.  This version of the
            project (01) has the accession number NZ_RDSK01000000, and consists
            of sequences RDSK01000001-RDSK01000018.
            Bacteria and source DNA available from Prof. Ulrich Stingl.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUL-2015
            Assembly Method        :: SPAdes v. 2.5.1
            Assembly Name          :: MethanohalophilusRSK
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 95.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003722075.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:47:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,119
            CDSs (total)                      :: 2,060
            Genes (coding)                    :: 2,024
            CDSs (with protein)               :: 2,024
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 8 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 16 of 36
            Pseudo Genes (multiple problems)  :: 7 of 36
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1969036
                     /organism="Methanohalophilus sp. RSK"
                     /mol_type="genomic DNA"
                     /strain="RSK"
                     /isolation_source="Kebrit Deep brine pool"
                     /db_xref="taxon:2485783"
                     /geo_loc_name="Saudi Arabia: Red Sea"
                     /lat_lon="24.4328 N 36.1636 E"
                     /collection_date="2011-11"
WGS         RDSK01000001-RDSK01000018
WGS_SCAFLD  NZ_RDSK01000001-NZ_RDSK01000018
//
LOCUS       NZ_RJJF01000000      1870534 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus euhalobius strain DSM 10369, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RJJF00000000
VERSION     NZ_RJJF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10345419
            Assembly: GCF_003722155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus euhalobius
  ORGANISM  Methanohalophilus euhalobius
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1870534)
  AUTHORS   Guan,Y., Ngugi,D.K. and Stingl,U.
  TITLE     Cultivation of a novel Methanohalophilus strain from Kebrit Deep of
            the Red Sea and a genomic comparison of members of the genus
            Methanohalophilus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1870534)
  AUTHORS   Guan,Y., Ngugi,D.K. and Stingl,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2018) Red Sea Research Center, King Abdullah
            University of Science and Technology (KAUST), 4700 KAUST, Thuwal
            (Jeddah), Western 23955-6900, Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RJJF00000000.1.
            The Methanohalophilus euhalobius whole genome shotgun (WGS) project
            has the project accession NZ_RJJF00000000.  This version of the
            project (01) has the accession number NZ_RJJF01000000, and consists
            of sequences RJJF01000001-RJJF01000021.
            Bacteria and source DNA available from DSM 10369.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUL-2015
            Assembly Method        :: SPAdes v. 2.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003722155.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:52:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,050
            CDSs (total)                      :: 1,997
            Genes (coding)                    :: 1,953
            CDSs (with protein)               :: 1,953
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 12 of 44
            Pseudo Genes (incomplete)         :: 26 of 44
            Pseudo Genes (internal stop)      :: 15 of 44
            Pseudo Genes (multiple problems)  :: 8 of 44
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870534
                     /organism="Methanohalophilus euhalobius"
                     /mol_type="genomic DNA"
                     /strain="DSM 10369"
                     /culture_collection="DSM:10369"
                     /db_xref="taxon:51203"
                     /geo_loc_name="Germany"
                     /collection_date="2015-07"
WGS         RJJF01000001-RJJF01000021
WGS_SCAFLD  NZ_RJJF01000001-NZ_RJJF01000021
//
LOCUS       NZ_RJJG01000000      2021537 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus halophilus strain DSM 3094, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RJJG00000000
VERSION     NZ_RJJG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10345420
            Assembly: GCF_003722055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus halophilus
  ORGANISM  Methanohalophilus halophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 2021537)
  AUTHORS   Guan,Y., Ngugi,D.K. and Stingl,U.
  TITLE     Cultivation of a novel Methanohalophilus strain from Kebrit Deep of
            the Red Sea and a genomic comparison of members of the genus
            Methanohalophilus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2021537)
  AUTHORS   Guan,Y., Ngugi,D.K. and Stingl,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2018) Red Sea Research Center, King Abdullah
            University of Science and Technology (KAUST), 4700 KAUST, Thuwal
            (Jeddah), Western 23955-6900, Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RJJG00000000.1.
            The Methanohalophilus halophilus whole genome shotgun (WGS) project
            has the project accession NZ_RJJG00000000.  This version of the
            project (01) has the accession number NZ_RJJG01000000, and consists
            of sequences RJJG01000001-RJJG01000010.
            Bacteria and source DNA available from DSM 3094.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUL-2015
            Assembly Method        :: SPAdes v. 2.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 63.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003722055.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:54:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,105
            CDSs (total)                      :: 2,050
            Genes (coding)                    :: 2,031
            CDSs (with protein)               :: 2,031
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 1 of 19
            Pseudo Genes (incomplete)         :: 7 of 19
            Pseudo Genes (internal stop)      :: 11 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021537
                     /organism="Methanohalophilus halophilus"
                     /mol_type="genomic DNA"
                     /strain="DSM 3094"
                     /culture_collection="DSM:3094"
                     /type_material="type strain of Methanococcus halophilus"
                     /db_xref="taxon:2177"
                     /geo_loc_name="Germany"
                     /collection_date="2015-07"
WGS         RJJG01000001-RJJG01000010
WGS_SCAFLD  NZ_RJJG01000001-NZ_RJJG01000010
//
LOCUS       NZ_RJJH01000000      2079136 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus portucalensis FDF-1 strain DSM 7471, whole genome
            shotgun sequencing project.
ACCESSION   NZ_RJJH00000000
VERSION     NZ_RJJH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10345421
            Assembly: GCF_003722115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus portucalensis FDF-1
  ORGANISM  Methanohalophilus portucalensis FDF-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 2079136)
  AUTHORS   Guan,Y., Ngugi,D.K. and Stingl,U.
  TITLE     Cultivation of a novel Methanohalophilus strain from Kebrit Deep of
            the Red Sea and a genomic comparison of members of the genus
            Methanohalophilus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2079136)
  AUTHORS   Guan,Y., Ngugi,D.K. and Stingl,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2018) Red Sea Research Center, King Abdullah
            University of Science and Technology (KAUST), 4700 KAUST, Thuwal
            (Jeddah), Western 23955-6900, Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RJJH00000000.1.
            The Methanohalophilus portucalensis FDF-1 whole genome shotgun
            (WGS) project has the project accession NZ_RJJH00000000.  This
            version of the project (01) has the accession number
            NZ_RJJH01000000, and consists of sequences
            RJJH01000001-RJJH01000017.
            Bacteria and source DNA available from DSM 7471.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUL-2015
            Assembly Method        :: SPAdes v. 2.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 86.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003722115.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:47:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,173
            CDSs (total)                      :: 2,118
            Genes (coding)                    :: 2,093
            CDSs (with protein)               :: 2,093
            Genes (RNA)                       :: 55
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 17 of 25
            Pseudo Genes (internal stop)      :: 8 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079136
                     /organism="Methanohalophilus portucalensis FDF-1"
                     /mol_type="genomic DNA"
                     /strain="DSM 7471"
                     /culture_collection="DSM:7471"
                     /type_material="type strain of Methanohalophilus
                     portucalensis"
                     /db_xref="taxon:523843"
                     /geo_loc_name="Germany"
                     /collection_date="2015-07"
WGS         RJJH01000001-RJJH01000017
WGS_SCAFLD  NZ_RJJH01000001-NZ_RJJH01000017
//
LOCUS       NZ_NQLD01000000      1926345 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter intestini strain WWM1085, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NQLD00000000
VERSION     NZ_NQLD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07492084
            Assembly: GCF_002252585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter intestini
  ORGANISM  Methanobrevibacter intestini
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1926345)
  AUTHORS   Jennings,M.E., Chia,N., Boardman,L.A. and Metcalf,W.
  TITLE     Draft genome sequence of Methanobrevibacter smithii isolate WWM1085
            from a human stool sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1926345)
  AUTHORS   Jennings,M.E., Chia,N., Boardman,L.A. and Metcalf,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2017) Microbiology, University of Illinois, 408
            Ginger Bend Dr., Apt 106, Champaign, IL 61822, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NQLD00000000.1.
            The Methanobrevibacter intestini whole genome shotgun (WGS) project
            has the project accession NZ_NQLD00000000.  This version of the
            project (01) has the accession number NZ_NQLD01000000, and consists
            of sequences NQLD01000001-NQLD01000016.
            Bacteria and source DNA available from William Metcalf.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 09-AUG-2017
            Assembly Method        :: Geneious v. 9.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 61.4x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002252585.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 19:50:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,864
            CDSs (total)                      :: 1,818
            Genes (coding)                    :: 1,782
            CDSs (with protein)               :: 1,782
            Genes (RNA)                       :: 46
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 1 of 36
            Pseudo Genes (frameshifted)       :: 19 of 36
            Pseudo Genes (incomplete)         :: 19 of 36
            Pseudo Genes (internal stop)      :: 2 of 36
            Pseudo Genes (multiple problems)  :: 5 of 36
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926345
                     /organism="Methanobrevibacter intestini"
                     /mol_type="genomic DNA"
                     /strain="WWM1085"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /type_material="type strain of Methanobrevibacter
                     intestini"
                     /db_xref="taxon:2911853"
                     /geo_loc_name="USA: Minnesota"
                     /lat_lon="44.02 N 92.47 W"
                     /collection_date="2013-09-24"
WGS         NQLD01000001-NQLD01000016
WGS_SCAFLD  NZ_NQLD01000001-NZ_NQLD01000016
//
LOCUS       NZ_LMVO01000000      1709133 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanocorpusculum parvum strain XII, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LMVO00000000
VERSION     NZ_LMVO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04229038
            Assembly: GCF_002287215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocorpusculum parvum
  ORGANISM  Methanocorpusculum parvum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanocorpusculum.
REFERENCE   1  (bases 1 to 1709133)
  AUTHORS   Gilmore,S.P., Henske,J.K., Sexton,J.A., Solomon,K.V., Seppala,S.,
            Yoo,J.I., Huyett,L.M., Pressman,A., Cogan,J.Z., Kivenson,V.,
            Peng,X., Tan,Y., Valentine,D.L. and O'Malley,M.A.
  TITLE     Genomic analysis of methanogenic archaea reveals a shift towards
            energy conservation
  JOURNAL   BMC Genomics 18 (1), 639 (2017)
   PUBMED   28826405
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709133)
  AUTHORS   Gilmore,S.P., Henske,J.K., Sexton,J.A., Solomon,K.V., Yoo,J.,
            Huyett,L.M., Pressman,A., Cogan,Z., Tan,Y., Valentine,D.L. and
            O'Malley,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2015) Chemical Engineering, University of
            California Santa Barbara, 3357 Engineering II, Santa Barbara, CA
            93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LMVO00000000.1.
            The Methanocorpusculum parvum whole genome shotgun (WGS) project
            has the project accession NZ_LMVO00000000.  This version of the
            project (01) has the accession number NZ_LMVO01000000, and consists
            of sequences LMVO01000001-LMVO01000047.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. JUN-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 213.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002287215.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:02:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,750
            CDSs (total)                      :: 1,697
            Genes (coding)                    :: 1,694
            CDSs (with protein)               :: 1,694
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 1 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 2 of 3
            Pseudo Genes (multiple problems)  :: 1 of 3
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709133
                     /organism="Methanocorpusculum parvum"
                     /mol_type="genomic DNA"
                     /strain="XII"
                     /type_material="type strain of Methanocorpusculum parvum"
                     /db_xref="taxon:2193"
                     /geo_loc_name="Germany"
WGS         LMVO01000001-LMVO01000047
WGS_SCAFLD  NZ_LMVO01000001-NZ_LMVO01000047
//
LOCUS       NZ_LMVM01000000      3466370 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobacterium bryantii strain M.o.H., whole genome shotgun
            sequencing project.
ACCESSION   NZ_LMVM00000000
VERSION     NZ_LMVM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04229035
            Assembly: GCF_002287175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium bryantii
  ORGANISM  Methanobacterium bryantii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 3466370)
  AUTHORS   Gilmore,S.P., Henske,J.K., Sexton,J.A., Solomon,K.V., Seppala,S.,
            Yoo,J.I., Huyett,L.M., Pressman,A., Cogan,J.Z., Kivenson,V.,
            Peng,X., Tan,Y., Valentine,D.L. and O'Malley,M.A.
  TITLE     Genomic analysis of methanogenic archaea reveals a shift towards
            energy conservation
  JOURNAL   BMC Genomics 18 (1), 639 (2017)
   PUBMED   28826405
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3466370)
  AUTHORS   Gilmore,S.P., Henske,J.K., Sexton,J.A., Solomon,K.V., Huyett,L.M.,
            Yoo,J., Pressman,A., Cogan,Z., Valentine,D.L., O'Malley,M.A. and
            Tan,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2015) Chemical Engineering, University of
            California Santa Barbara, 3357 Engineering II, Santa Barbara, CA
            93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LMVM00000000.1.
            The Methanobacterium bryantii whole genome shotgun (WGS) project
            has the project accession NZ_LMVM00000000.  This version of the
            project (01) has the accession number NZ_LMVM01000000, and consists
            of sequences LMVM01000001-LMVM01000041.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. JUN-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 166.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002287175.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:16:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,412
            CDSs (total)                      :: 3,366
            Genes (coding)                    :: 3,347
            CDSs (with protein)               :: 3,347
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 7 of 19
            Pseudo Genes (incomplete)         :: 10 of 19
            Pseudo Genes (internal stop)      :: 6 of 19
            Pseudo Genes (multiple problems)  :: 3 of 19
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3466370
                     /organism="Methanobacterium bryantii"
                     /mol_type="genomic DNA"
                     /strain="M.o.H."
                     /type_material="type strain of Methanobacterium bryantii"
                     /db_xref="taxon:2161"
WGS         LMVM01000001-LMVM01000041
WGS_SCAFLD  NZ_LMVM01000001-NZ_LMVM01000041
//
LOCUS       NZ_MZGS01000000      2243115 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter thaueri strain DSM 11995, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MZGS00000000
VERSION     NZ_MZGS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06461352
            Assembly: GCF_003111625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter thaueri
  ORGANISM  Methanobrevibacter thaueri
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2243115)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Genome sequence of Methanobrevibacter thaueri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2243115)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2017) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MZGS00000000.1.
            The Methanobrevibacter thaueri whole genome shotgun (WGS) project
            has the project accession NZ_MZGS00000000.  This version of the
            project (01) has the accession number NZ_MZGS01000000, and consists
            of sequences MZGS01000001-MZGS01000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.10.0
            Genome Coverage       :: 144x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003111625.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:21:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,184
            CDSs (total)                      :: 2,135
            Genes (coding)                    :: 2,125
            CDSs (with protein)               :: 2,125
            Genes (RNA)                       :: 49
            rRNAs                             :: 3, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 4 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 0 of 10
            Pseudo Genes (incomplete)         :: 10 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243115
                     /organism="Methanobrevibacter thaueri"
                     /mol_type="genomic DNA"
                     /strain="DSM 11995"
                     /isolation_source="bovine feces"
                     /culture_collection="DSM:11995"
                     /type_material="type strain of Methanobrevibacter thaueri"
                     /db_xref="taxon:190975"
                     /geo_loc_name="USA"
WGS         MZGS01000001-MZGS01000043
WGS_SCAFLD  NZ_MZGS01000001-NZ_MZGS01000043
//
LOCUS       NZ_MZGU01000000      1543150 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter woesei strain DSM 11979, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MZGU00000000
VERSION     NZ_MZGU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06461353
            Assembly: GCF_003111605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter woesei
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1543150)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Genome sequence of Methanobrevibacter wosei
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1543150)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2017) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MZGU00000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_MZGU00000000.  This version of the
            project (01) has the accession number NZ_MZGU01000000, and consists
            of sequences MZGU01000001-MZGU01000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.10.0
            Genome Coverage       :: 100x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003111605.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:22:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,636
            CDSs (total)                      :: 1,590
            Genes (coding)                    :: 1,580
            CDSs (with protein)               :: 1,580
            Genes (RNA)                       :: 46
            rRNAs                             :: 3, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 5 of 10
            Pseudo Genes (incomplete)         :: 6 of 10
            Pseudo Genes (internal stop)      :: 2 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543150
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /strain="DSM 11979"
                     /isolation_source="goose feces"
                     /culture_collection="DSM:11979"
                     /type_material="type strain of Methanobrevibacter woesei"
                     /db_xref="taxon:190976"
                     /geo_loc_name="USA"
WGS         MZGU01000001-MZGU01000012
WGS_SCAFLD  NZ_MZGU01000001-NZ_MZGU01000012
//
LOCUS       NZ_OKQL01000000      2123874 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter oralis strain M2 CSUR P5920, whole genome
            shotgun sequencing project.
ACCESSION   NZ_OKQL00000000
VERSION     NZ_OKQL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104570764
            Assembly: GCF_900289035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter oralis
  ORGANISM  Methanobrevibacter oralis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  CONSRTM   Urmite Genomes
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2018) URMITE, 27 Bd J Moulin, 13385 Marseille
            Cedex 05, France, 13385, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            OKQL00000000.1.
            The Methanobrevibacter oralis whole genome shotgun (WGS) project
            has the project accession NZ_OKQL00000000.  This version of the
            project (01) has the accession number NZ_OKQL01000000, and consists
            of sequences OKQL01000001-OKQL01000112.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900289035.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:09:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,072
            CDSs (total)                      :: 2,033
            Genes (coding)                    :: 1,990
            CDSs (with protein)               :: 1,990
            Genes (RNA)                       :: 39
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 8 of 43
            Pseudo Genes (incomplete)         :: 36 of 43
            Pseudo Genes (internal stop)      :: 6 of 43
            Pseudo Genes (multiple problems)  :: 5 of 43
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123874
                     /organism="Methanobrevibacter oralis"
                     /mol_type="genomic DNA"
                     /strain="M2 CSUR P5920"
                     /isolation_source="Human colostrum"
                     /db_xref="taxon:66851"
WGS         OKQL01000001-OKQL01000112
WGS_SCAFLD  NZ_LT985082-NZ_LT985187
//
LOCUS       NZ_OBEJ01000000      3164179 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronoarchaeum philippinense strain DSM 27208, whole genome
            shotgun sequencing project.
ACCESSION   NZ_OBEJ00000000
VERSION     NZ_OBEJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06269185
            Assembly: GCF_900215575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronoarchaeum philippinense
  ORGANISM  Natronoarchaeum philippinense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            OBEJ00000000.1.
            The Natronoarchaeum philippinense whole genome shotgun (WGS)
            project has the project accession NZ_OBEJ00000000.  This version of
            the project (01) has the accession number NZ_OBEJ01000000, and
            consists of sequences OBEJ01000001-OBEJ01000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900215575.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:11:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,326
            CDSs (total)                      :: 3,272
            Genes (coding)                    :: 3,244
            CDSs (with protein)               :: 3,244
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 2 of 28
            Pseudo Genes (incomplete)         :: 23 of 28
            Pseudo Genes (internal stop)      :: 4 of 28
            Pseudo Genes (multiple problems)  :: 1 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164179
                     /organism="Natronoarchaeum philippinense"
                     /mol_type="genomic DNA"
                     /strain="DSM 27208"
                     /type_material="type strain of Natronoarchaeum
                     philippinense"
                     /db_xref="taxon:558529"
WGS         OBEJ01000001-OBEJ01000011
WGS_SCAFLD  NZ_OBEJ01000001-NZ_OBEJ01000011
//
LOCUS       NZ_QZAC01000000      1687998 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanocalculus sp. MSAO_Arc2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QZAC00000000
VERSION     NZ_QZAC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09770003
            Assembly: GCF_003838065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocalculus sp. MSAO_Arc2 (soda lake metagenome)
  ORGANISM  Methanocalculus sp. MSAO_Arc2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 1687998)
  AUTHORS   Timmers,P.H.A., Vavourakis,C.D., Sorokin,D.Y., Sinninghe
            Damste,J.S., Muyzer,G., Stams,A.J.M. and Plugge,C.M.
  TITLE     The metabolism and importance of syntrophic acetate oxidation
            coupled to methane or sulfide production in haloalkaline
            environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1687998)
  AUTHORS   Vavourakis,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-AUG-2018) Freshwater and Marine Ecology, Institute
            for Biodiversity and Ecosystem dynamics, Faculty of Science,
            University of Amsterdam, PO Box 94248, Amsterdam 1090 GE,
            Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QZAC00000000.1.
            The Methanocalculus sp. MSAO_Arc2 whole genome shotgun (WGS)
            project has the project accession NZ_QZAC00000000.  This version of
            the project (01) has the accession number NZ_QZAC01000000, and
            consists of sequences QZAC01000001-QZAC01000232.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.0.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 235x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003838065.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:33:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,922
            CDSs (total)                      :: 1,879
            Genes (coding)                    :: 1,812
            CDSs (with protein)               :: 1,812
            Genes (RNA)                       :: 43
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 2 of 67
            Pseudo Genes (incomplete)         :: 64 of 67
            Pseudo Genes (internal stop)      :: 3 of 67
            Pseudo Genes (multiple problems)  :: 2 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687998
                     /organism="Methanocalculus sp. MSAO_Arc2"
                     /mol_type="genomic DNA"
                     /isolate="MSAO_Arc2"
                     /isolation_source="enrichment culture inoculated with
                     sediment from anoxic soda lake"
                     /db_xref="taxon:2293855"
                     /environmental_sample
                     /geo_loc_name="Russia: Kulunda Steppe"
                     /lat_lon="51.67 N 79.91 E"
                     /collection_date="2011-07"
                     /metagenome_source="soda lake metagenome"
                     /metagenomic
WGS         QZAC01000001-QZAC01000232
WGS_SCAFLD  NZ_QZAC01000001-NZ_QZAC01000232
//
LOCUS       NZ_NXNI01000000      4476324 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrinema ejinorense strain JCM 13890, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NXNI00000000
VERSION     NZ_NXNI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07714153
            Assembly: GCF_002494345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema ejinorense
  ORGANISM  Natrinema ejinorense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4476324)
  AUTHORS   Roh,S.W., Kim,Y.B. and Kim,J.Y.
  TITLE     Genome sequences of Natrinema ejinorence JCM 13890T
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4476324)
  AUTHORS   Roh,S.W., Kim,Y.B. and Kim,J.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2017) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju
            61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NXNI00000000.1.
            The Natrinema ejinorense whole genome shotgun (WGS) project has the
            project accession NZ_NXNI00000000.  This version of the project
            (01) has the accession number NZ_NXNI01000000, and consists of
            sequences NXNI01000001-NXNI01000003.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 176.73x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002494345.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:16:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,458
            CDSs (total)                      :: 4,397
            Genes (coding)                    :: 4,318
            CDSs (with protein)               :: 4,318
            Genes (RNA)                       :: 61
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 40 of 79
            Pseudo Genes (incomplete)         :: 55 of 79
            Pseudo Genes (internal stop)      :: 16 of 79
            Pseudo Genes (multiple problems)  :: 29 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4476324
                     /organism="Natrinema ejinorense"
                     /mol_type="genomic DNA"
                     /strain="JCM 13890"
                     /isolation_source="salin lake"
                     /culture_collection="JCM:13890"
                     /type_material="type strain of Natrinema ejinorense"
                     /db_xref="taxon:373386"
WGS         NXNI01000001-NXNI01000003
WGS_SCAFLD  NZ_NXNI01000001-NZ_NXNI01000003
//
LOCUS       NZ_QZAD01000000      1780434 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanocalculus sp. MSAO_Arc1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QZAD00000000
VERSION     NZ_QZAD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09770002
            Assembly: GCF_003838185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocalculus sp. MSAO_Arc1 (soda lake metagenome)
  ORGANISM  Methanocalculus sp. MSAO_Arc1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 1780434)
  AUTHORS   Timmers,P.H.A., Vavourakis,C.D., Sorokin,D.Y., Sinninghe
            Damste,J.S., Muyzer,G., Stams,A.J.M. and Plugge,C.M.
  TITLE     The metabolism and importance of syntrophic acetate oxidation
            coupled to methane or sulfide production in haloalkaline
            environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1780434)
  AUTHORS   Vavourakis,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2018) Freshwater and Marine Ecology, Institute
            for Biodiversity and Ecosystem dynamics, Faculty of Science,
            University of Amsterdam, PO Box 94248, Amsterdam 1090 GE,
            Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QZAD00000000.1.
            The Methanocalculus sp. MSAO_Arc1 whole genome shotgun (WGS)
            project has the project accession NZ_QZAD00000000.  This version of
            the project (01) has the accession number NZ_QZAD01000000, and
            consists of sequences QZAD01000001-QZAD01000127.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.0.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 931x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003838185.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:48:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,926
            CDSs (total)                      :: 1,883
            Genes (coding)                    :: 1,862
            CDSs (with protein)               :: 1,862
            Genes (RNA)                       :: 43
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 20 of 21
            Pseudo Genes (internal stop)      :: 0 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780434
                     /organism="Methanocalculus sp. MSAO_Arc1"
                     /mol_type="genomic DNA"
                     /isolate="MSAO_Arc1"
                     /isolation_source="enrichment culture inoculated with
                     sediment from anoxic soda lake"
                     /db_xref="taxon:2293854"
                     /environmental_sample
                     /geo_loc_name="Russia: Kulunda Steppe"
                     /lat_lon="51.67 N 79.91 E"
                     /collection_date="2011-07"
                     /metagenome_source="soda lake metagenome"
                     /metagenomic
WGS         QZAD01000001-QZAD01000127
WGS_SCAFLD  NZ_QZAD01000001-NZ_QZAD01000127
//
LOCUS       NZ_PDBS01000000      5058058 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrinema sp. CBA1119, whole genome shotgun sequencing project.
ACCESSION   NZ_PDBS00000000
VERSION     NZ_PDBS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07714133
            Assembly: GCF_002572525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema sp. CBA1119
  ORGANISM  Natrinema sp. CBA1119
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 5058058)
  AUTHORS   Roh,S.W., Kim,Y.B. and Kim,J.Y.
  TITLE     Genome sequences of Natrinema thermophila CBA1119T
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5058058)
  AUTHORS   Roh,S.W., Kim,Y.B. and Kim,J.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2017) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju
            61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PDBS00000000.1.
            The Natrinema sp. CBA1119 whole genome shotgun (WGS) project has
            the project accession NZ_PDBS00000000.  This version of the project
            (01) has the accession number NZ_PDBS01000000, and consists of
            sequences PDBS01000001-PDBS01000009.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 278.85x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002572525.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 20:48:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,085
            CDSs (total)                      :: 5,020
            Genes (coding)                    :: 4,770
            CDSs (with protein)               :: 4,770
            Genes (RNA)                       :: 65
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 250
            CDSs (without protein)            :: 250
            Pseudo Genes (ambiguous residues) :: 0 of 250
            Pseudo Genes (frameshifted)       :: 130 of 250
            Pseudo Genes (incomplete)         :: 157 of 250
            Pseudo Genes (internal stop)      :: 55 of 250
            Pseudo Genes (multiple problems)  :: 75 of 250
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5058058
                     /organism="Natrinema sp. CBA1119"
                     /mol_type="genomic DNA"
                     /strain="CBA1119"
                     /isolation_source="solar salt"
                     /db_xref="taxon:1608465"
                     /geo_loc_name="South Korea"
                     /lat_lon="34.587738 N 126.105372 E"
WGS         PDBS01000001-PDBS01000009
WGS_SCAFLD  NZ_PDBS01000001-NZ_PDBS01000009
//
LOCUS       NZ_PKKI01000000      3695310 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronobacterium gregoryi SP2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PKKI00000000
VERSION     NZ_PKKI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08213458
            Assembly: GCF_002855455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronobacterium gregoryi SP2
  ORGANISM  Natronobacterium gregoryi SP2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronobacterium.
REFERENCE   1  (bases 1 to 3695310)
  AUTHORS   Jiang,L., He,B., Kang,J., Yu,M., Li,N., Fang,Y., Tang,Z., Wu,P.,
            Yao,P. and Huang,J.
  TITLE     The characterization of oligonucleotides binding to NgAgo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3695310)
  AUTHORS   Jiang,L., He,B., Kang,J., Yu,M., Li,N., Fang,Y., Tang,Z., Wu,P.,
            Yao,P. and Huang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2017) School of Life Science and Technology,
            University of Electronic Science and Technology of China,
            Qingshuihe Campus:No.2006, Xiyuan Ave, West Hi-Tech Zone, Chengdu,
            Sichuan Province 611731, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PKKI00000000.1.
            The Natronobacterium gregoryi SP2 whole genome shotgun (WGS)
            project has the project accession NZ_PKKI00000000.  This version of
            the project (01) has the accession number NZ_PKKI01000000, and
            consists of sequences PKKI01000001-PKKI01000149.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 22-JUL-2017
            Assembly Method           :: SOAPdenovo v. 2.04
            Genome Representation     :: Full
            Expected Final Version    :: No
            Reference-guided Assembly :: GCA_000230715.3
            Genome Coverage           :: 640.0x
            Sequencing Technology     :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002855455.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 22:56:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,710
            CDSs (total)                      :: 3,658
            Genes (coding)                    :: 3,543
            CDSs (with protein)               :: 3,543
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 43 of 115
            Pseudo Genes (incomplete)         :: 81 of 115
            Pseudo Genes (internal stop)      :: 20 of 115
            Pseudo Genes (multiple problems)  :: 28 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695310
                     /organism="Natronobacterium gregoryi SP2"
                     /mol_type="genomic DNA"
                     /strain="SP2"
                     /isolation_source="water"
                     /type_material="type strain of Natronobacterium gregoryi"
                     /db_xref="taxon:797304"
                     /dev_stage="Mature thallus"
                     /geo_loc_name="Kenya: Lake Magadi"
                     /lat_lon="1.9446 S 36.2522 E"
WGS         PKKI01000001-PKKI01000149
WGS_SCAFLD  NZ_PKKI01000001-NZ_PKKI01000149
//
LOCUS       NZ_FRFC01000000      1598048 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Nitrosotalea sinensis isolate NSIN, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FRFC00000000
VERSION     NZ_FRFC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA20449918
            Assembly: GCF_900143675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrosotalea sinensis
  ORGANISM  Nitrosotalea sinensis
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosotaleales;
            Nitrosotaleaceae; Nitrosotalea.
REFERENCE   1
  AUTHORS   Herbold,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2016) UNIVERSITY OF VIENNA, DMES, Althanstr. 14,
            A-1090 Vienna, Austria
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FRFC00000000.1.
            The Nitrosotalea sinensis whole genome shotgun (WGS) project has
            the project accession NZ_FRFC00000000.  This version of the project
            (01) has the accession number NZ_FRFC01000000, and consists of
            sequences FRFC01000001-FRFC01000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900143675.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 23:20:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,914
            CDSs (total)                      :: 1,865
            Genes (coding)                    :: 1,859
            CDSs (with protein)               :: 1,859
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 5 of 6
            Pseudo Genes (internal stop)      :: 1 of 6
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598048
                     /organism="Nitrosotalea sinensis"
                     /mol_type="genomic DNA"
                     /isolate="NSIN"
                     /db_xref="taxon:1499975"
WGS         FRFC01000001-FRFC01000010
WGS_SCAFLD  NZ_FRFC01000001-NZ_FRFC01000010
//
LOCUS       NZ_REGA01000000      4566486 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrarchaeobius chitinivorans strain AArcht4T, whole genome shotgun
            sequencing project.
ACCESSION   NZ_REGA00000000
VERSION     NZ_REGA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10160502
            Assembly: GCF_003841505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrarchaeobius chitinivorans
  ORGANISM  Natrarchaeobius chitinivorans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrarchaeobius.
REFERENCE   1  (bases 1 to 4566486)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Kostrikina,N.A., Bale,N.J.,
            Sinninghe Damste,J.S., Khijniak,T.V., Kublanov,I.V. and
            Toshchakov,S.V.
  TITLE     Natrarchaeobius chitinivorans gen. nov., sp. nov., and
            Natrarchaeobius haloalkaliphilus sp. nov., alkaliphilic,
            chitin-utilizing haloarchaea from hypersaline alkaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4566486)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Kostrikina,N.A., Bale,N.J.,
            Sinninghe Damste,J.S., Khijniak,T.V., Kublanov,I.V. and
            Toshchakov,S.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2018) Extremophiles Metabolism Laboratory,
            Winogradsky Institute of Microbiology, Prospekt 60 Let Oktyabrya,
            7/2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            REGA00000000.1.
            The Natrarchaeobius chitinivorans whole genome shotgun (WGS)
            project has the project accession NZ_REGA00000000.  This version of
            the project (01) has the accession number NZ_REGA01000000, and
            consists of sequences REGA01000001-REGA01000048.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2015
            Assembly Method        :: SPAdes v. OCT-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 153x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003841505.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:50:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,446
            CDSs (total)                      :: 4,392
            Genes (coding)                    :: 4,269
            CDSs (with protein)               :: 4,269
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 38 of 123
            Pseudo Genes (incomplete)         :: 101 of 123
            Pseudo Genes (internal stop)      :: 17 of 123
            Pseudo Genes (multiple problems)  :: 28 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4566486
                     /organism="Natrarchaeobius chitinivorans"
                     /mol_type="genomic DNA"
                     /strain="AArcht4T"
                     /isolation_source="sediment"
                     /type_material="type strain of Natrarchaeobius
                     chitinivorans"
                     /db_xref="taxon:1679083"
                     /geo_loc_name="Egypt: Wadi Natrun"
                     /lat_lon="30.4000 N 30.3000 E"
                     /collection_date="2000"
WGS         REGA01000001-REGA01000048
WGS_SCAFLD  NZ_REGA01000001-NZ_REGA01000048
//
LOCUS       NZ_REFZ01000000      4614480 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrarchaeobius oligotrophus strain AArcht7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_REFZ00000000
VERSION     NZ_REFZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10160503
            Assembly: GCF_003841465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrarchaeobius oligotrophus
  ORGANISM  Natrarchaeobius oligotrophus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrarchaeobius.
REFERENCE   1  (bases 1 to 4614480)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Kostrikina,N.A., Bale,N.J.,
            Sinninghe Damste,J.S., Khijniak,T.V., Kublanov,I.V. and
            Toshchakov,S.V.
  TITLE     Natrarchaeobius chitinivorans gen. nov., sp. nov., and
            Natrarchaeobius haloalkaliphilus sp. nov., alkaliphilic,
            chitin-utilizing haloarchaea from hypersaline alkaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4614480)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Kostrikina,N.A., Bale,N.J.,
            Sinninghe Damste,J.S., Khijniak,T.V., Kublanov,I.V. and
            Toshchakov,S.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2018) Extremophiles Metabolism Laboratory,
            Winogradsky Institute of Microbiology, Prospekt 60 Let Oktyabrya,
            7/2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            REFZ00000000.1.
            The Natrarchaeobius oligotrophus whole genome shotgun (WGS) project
            has the project accession NZ_REFZ00000000.  This version of the
            project (01) has the accession number NZ_REFZ01000000, and consists
            of sequences REFZ01000001-REFZ01000069.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2015
            Assembly Method        :: SPAdes v. OCT-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 123x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003841465.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:49:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,495
            CDSs (total)                      :: 4,442
            Genes (coding)                    :: 4,318
            CDSs (with protein)               :: 4,318
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 52 of 124
            Pseudo Genes (incomplete)         :: 100 of 124
            Pseudo Genes (internal stop)      :: 25 of 124
            Pseudo Genes (multiple problems)  :: 40 of 124
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614480
                     /organism="Natrarchaeobius oligotrophus"
                     /mol_type="genomic DNA"
                     /strain="AArcht7"
                     /isolation_source="sediment"
                     /type_material="type strain of Natrarchaeobius
                     oligotrophus"
                     /db_xref="taxon:3455743"
                     /geo_loc_name="Russia: Kulunda steppe"
                     /lat_lon="51.7000 N 79.7000 E"
                     /collection_date="2003"
WGS         REFZ01000001-REFZ01000069
WGS_SCAFLD  NZ_REFZ01000001-NZ_REFZ01000069
//
LOCUS       NZ_QQTY01000000      4665679 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronorubrum halophilum strain SHR37, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QQTY00000000
VERSION     NZ_QQTY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09717252
            Assembly: GCF_003670115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum halophilum
  ORGANISM  Natronorubrum halophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4665679)
  AUTHORS   Tao,C.
  TITLE     Natronorubrum sp. nov. isolated from salt lake
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4665679)
  AUTHORS   Tao,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2018) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QQTY00000000.1.
            The Natronorubrum halophilum whole genome shotgun (WGS) project has
            the project accession NZ_QQTY00000000.  This version of the project
            (01) has the accession number NZ_QQTY01000000, and consists of
            sequences QQTY01000001-QQTY01000008.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. JULY-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003670115.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:02:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,564
            CDSs (total)                      :: 4,507
            Genes (coding)                    :: 4,400
            CDSs (with protein)               :: 4,400
            Genes (RNA)                       :: 57
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 52 of 107
            Pseudo Genes (incomplete)         :: 74 of 107
            Pseudo Genes (internal stop)      :: 21 of 107
            Pseudo Genes (multiple problems)  :: 35 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4665679
                     /organism="Natronorubrum halophilum"
                     /mol_type="genomic DNA"
                     /strain="SHR37"
                     /isolation_source="Dabancheng salt lake"
                     /type_material="type material of Natronorubrum halophilum"
                     /db_xref="taxon:1702106"
                     /geo_loc_name="China: XinJiang"
                     /collection_date="2012-10"
WGS         QQTY01000001-QQTY01000008
WGS_SCAFLD  NZ_QQTY01000001-NZ_QQTY01000008
//
LOCUS       NZ_REFY01000000      3511219 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrarchaeobius halalkaliphilus strain AArcht-Sl, whole genome
            shotgun sequencing project.
ACCESSION   NZ_REFY00000000
VERSION     NZ_REFY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10160504
            Assembly: GCF_003841485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrarchaeobius halalkaliphilus
  ORGANISM  Natrarchaeobius halalkaliphilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrarchaeobius.
REFERENCE   1  (bases 1 to 3511219)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Kostrikina,N.A., Bale,N.J.,
            Sinninghe Damste,J.S., Khijniak,T.V., Kublanov,I.V. and
            Toshchakov,S.V.
  TITLE     Natrarchaeobius chitinivorans gen. nov., sp. nov., and
            Natrarchaeobius haloalkaliphilus sp. nov., alkaliphilic,
            chitin-utilizing haloarchaea from hypersaline alkaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3511219)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Kostrikina,N.A., Bale,N.J.,
            Sinninghe Damste,J.S., Khijniak,T.V., Kublanov,I.V. and
            Toshchakov,S.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2018) Extremophiles Metabolism Laboratory,
            Winogradsky Institute of Microbiology, Prospekt 60 Let Oktyabrya,
            7/2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            REFY00000000.1.
            The Natrarchaeobius halalkaliphilus whole genome shotgun (WGS)
            project has the project accession NZ_REFY00000000.  This version of
            the project (01) has the accession number NZ_REFY01000000, and
            consists of sequences REFY01000001-REFY01000012.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2015
            Assembly Method        :: SPAdes v. OCT-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 235x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003841485.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:43:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,479
            CDSs (total)                      :: 3,426
            Genes (coding)                    :: 3,352
            CDSs (with protein)               :: 3,352
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 28 of 74
            Pseudo Genes (incomplete)         :: 54 of 74
            Pseudo Genes (internal stop)      :: 11 of 74
            Pseudo Genes (multiple problems)  :: 17 of 74
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3511219
                     /organism="Natrarchaeobius halalkaliphilus"
                     /mol_type="genomic DNA"
                     /strain="AArcht-Sl"
                     /isolation_source="sediment"
                     /type_material="type strain of Natrarchaeobius
                     halalkaliphilus"
                     /db_xref="taxon:1679091"
                     /geo_loc_name="USA: Searles lake"
                     /lat_lon="35.7333 N 117.3333 W"
                     /collection_date="2005"
WGS         REFY01000001-REFY01000012
WGS_SCAFLD  NZ_REFY01000001-NZ_REFY01000012
//
LOCUS       NZ_RKRG01000000      1877932 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter gottschalkii DSM 11977, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RKRG00000000
VERSION     NZ_RKRG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10363317
            Assembly: GCF_003814835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter gottschalkii DSM 11977
  ORGANISM  Methanobrevibacter gottschalkii DSM 11977
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1877932)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1877932)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-NOV-2018) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKRG00000000.1.
            The Methanobrevibacter gottschalkii DSM 11977 whole genome shotgun
            (WGS) project has the project accession NZ_RKRG00000000.  This
            version of the project (01) has the accession number
            NZ_RKRG01000000, and consists of sequences
            RKRG01000001-RKRG01000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 724.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003814835.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:56:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,902
            CDSs (total)                      :: 1,861
            Genes (coding)                    :: 1,849
            CDSs (with protein)               :: 1,849
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 4 of 12
            Pseudo Genes (incomplete)         :: 6 of 12
            Pseudo Genes (internal stop)      :: 4 of 12
            Pseudo Genes (multiple problems)  :: 2 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877932
                     /organism="Methanobrevibacter gottschalkii DSM 11977"
                     /mol_type="genomic DNA"
                     /strain="DSM 11977"
                     /culture_collection="DSM:11977"
                     /type_material="type strain of Methanobrevibacter
                     gottschalkii"
                     /db_xref="taxon:1122229"
WGS         RKRG01000001-RKRG01000006
WGS_SCAFLD  NZ_RKRG01000001-NZ_RKRG01000006
//
LOCUS       NZ_QBKB01000000      1829200 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus profundi strain SLHTYRO, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QBKB00000000
VERSION     NZ_QBKB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08804086
            Assembly: GCF_004137855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus profundi
  ORGANISM  Methanohalophilus profundi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1829200)
  AUTHORS   L'Haridon,S., Chalopin,M., Haroun,H., Corre,E., la Cono,V.,
            Jebbar,M., Yakimov,M. and Toffin,L.
  TITLE     Mathanohalophilus profundus sp. nov. strain SLHTYRO, the first
            mathylotrophic, halophilic, piezophilic microorganisms isolated
            from the deep hypersaline anoxic basin Tyro
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1829200)
  AUTHORS   L'Haridon,S., Chalopin,M., Haroun,H., Corre,E., la Cono,V.,
            Jebbar,M., Yakimov,M. and Toffin,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2018) FR2424, CNRS, Place Georges Teissier,
            Roscoff 29680, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QBKB00000000.1.
            The Methanohalophilus profundi whole genome shotgun (WGS) project
            has the project accession NZ_QBKB00000000.  This version of the
            project (01) has the accession number NZ_QBKB01000000, and consists
            of sequences QBKB01000001-QBKB01000004.
            Bacteria and source DNA available from Stephane  L'haridon.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 10-APR-2018
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5000.0x
            Sequencing Technology  :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004137855.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:06:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,134
            CDSs (total)                      :: 2,083
            Genes (coding)                    :: 1,945
            CDSs (with protein)               :: 1,945
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 99 of 138
            Pseudo Genes (incomplete)         :: 31 of 138
            Pseudo Genes (internal stop)      :: 19 of 138
            Pseudo Genes (multiple problems)  :: 11 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829200
                     /organism="Methanohalophilus profundi"
                     /mol_type="genomic DNA"
                     /strain="SLHTYRO"
                     /isolation_source="Deep Hypersaline anoxic basin Tyro"
                     /type_material="type strain of Methanohalophilus profundi"
                     /db_xref="taxon:2138083"
                     /geo_loc_name="Mediterranean Sea"
                     /lat_lon="33.524236 N 26.21962 E"
                     /collection_date="2009-09-12"
                     /collected_by="Michail Yakimov"
                     /identified_by="L'Haridon"
WGS         QBKB01000001-QBKB01000004
WGS_SCAFLD  NZ_QBKB01000001-NZ_QBKB01000004
//
LOCUS       NZ_RRBA01000000      1928720 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus sp. WG1-DM, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RRBA00000000
VERSION     NZ_RRBA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07462262
            Assembly: GCF_004104135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus sp. WG1-DM
  ORGANISM  Methanohalophilus sp. WG1-DM
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1928720)
  AUTHORS   Wolfe,R., Daly,R., Borton,M. and Wrighton,K.
  TITLE     Methanohalophilus sp. WG1-DM Annotated
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1928720)
  AUTHORS   Wolfe,R., Daly,R., Borton,M. and Wrighton,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Microbiology, Ohio State
            University, 484 W. 12th Ave, Columbus, OH 43210, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RRBA00000000.1.
            The Methanohalophilus sp. WG1-DM whole genome shotgun (WGS) project
            has the project accession NZ_RRBA00000000.  This version of the
            project (01) has the accession number NZ_RRBA01000000, and consists
            of sequences RRBA01000001-RRBA01000074.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: idba_ud v. 1.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 2792.5x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004104135.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:08:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,148
            CDSs (total)                      :: 2,093
            Genes (coding)                    :: 2,030
            CDSs (with protein)               :: 2,030
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 21 of 63
            Pseudo Genes (incomplete)         :: 43 of 63
            Pseudo Genes (internal stop)      :: 16 of 63
            Pseudo Genes (multiple problems)  :: 13 of 63
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928720
                     /organism="Methanohalophilus sp. WG1-DM"
                     /mol_type="genomic DNA"
                     /strain="WG1-DM"
                     /isolation_source="hydraulically fractured well fluid"
                     /db_xref="taxon:2491675"
                     /geo_loc_name="USA: Ohio"
                     /lat_lon="40.06 N 81.10000000 W"
                     /collection_date="2014-10-22"
WGS         RRBA01000001-RRBA01000074
WGS_SCAFLD  NZ_RRBA01000001-NZ_RRBA01000074
//
LOCUS       NZ_SCHL01000000      3558779 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanosarcina sp. MSH10X1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SCHL00000000
VERSION     NZ_SCHL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10743956
            Assembly: GCF_004099695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina sp. MSH10X1
  ORGANISM  Methanosarcina sp. MSH10X1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3558779)
  AUTHORS   Mehta,P., Dagar,S.S., Dhakephalkar,P.K. and Lanjekar,V.B.
  TITLE     Isolation and characterization of Methanosarcina sp. nov., from
            methane hydrate
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3558779)
  AUTHORS   Mehta,P., Dagar,S.S., Dhakephalkar,P.K. and Lanjekar,V.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2019) Bioenergy, Agharkar Research Institute, G.G
            Agarkar Road, Pune, Maharashtra 411005, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SCHL00000000.1.
            The Methanosarcina sp. MSH10X1 whole genome shotgun (WGS) project
            has the project accession NZ_SCHL00000000.  This version of the
            project (01) has the accession number NZ_SCHL01000000, and consists
            of sequences SCHL01000001-SCHL01000055.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 160.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004099695.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:07:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,096
            CDSs (total)                      :: 3,035
            Genes (coding)                    :: 2,990
            CDSs (with protein)               :: 2,990
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 5 of 45
            Pseudo Genes (incomplete)         :: 35 of 45
            Pseudo Genes (internal stop)      :: 9 of 45
            Pseudo Genes (multiple problems)  :: 4 of 45
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3558779
                     /organism="Methanosarcina sp. MSH10X1"
                     /mol_type="genomic DNA"
                     /strain="MSH10X1"
                     /isolation_source="sediments associated with methane
                     hydrate from KG basin"
                     /db_xref="taxon:2507075"
                     /geo_loc_name="India"
                     /collection_date="2016-07"
WGS         SCHL01000001-SCHL01000055
WGS_SCAFLD  NZ_SCHL01000001-NZ_SCHL01000055
//
LOCUS       NZ_CAABOX010000000   1720664 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter smithii strain C2 CSUR P5816, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAABOX000000000
VERSION     NZ_CAABOX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5207298
            Assembly: GCF_900650605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  CONSRTM   IHU Genomes
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2019) URMITE, IHU - Mediterranee Infection, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAABOX000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAABOX000000000.  This version of the
            project (01) has the accession number NZ_CAABOX010000000, and
            consists of sequences CAABOX010000001-CAABOX010000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900650605.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:09:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,710
            CDSs (total)                      :: 1,666
            Genes (coding)                    :: 1,645
            CDSs (with protein)               :: 1,645
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 12 of 21
            Pseudo Genes (incomplete)         :: 8 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720664
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /strain="C2 CSUR P5816"
                     /db_xref="taxon:2173"
WGS         CAABOX010000001-CAABOX010000011
WGS_SCAFLD  NZ_CAABOX010000001-NZ_CAABOX010000011
//
LOCUS       NZ_PGCL01000000      2357249 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanofollis fontis strain FWC-SCC2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PGCL00000000
VERSION     NZ_PGCL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07985449
            Assembly: GCF_004297185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanofollis fontis
  ORGANISM  Methanofollis fontis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanofollis.
REFERENCE   1  (bases 1 to 2357249)
  AUTHORS   Teng,N.-H., Lai,M.-C. and Chen,S.-C.
  TITLE     Isolation and Characterization of Methanofollis Species from
            Methane Seep Offshore SW Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2357249)
  AUTHORS   Teng,N.-H., Lai,M.-C. and Chen,S.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2017) Department of Life Sciences, National Chung
            Hsing University, 145 Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PGCL00000000.1.
            The Methanofollis fontis whole genome shotgun (WGS) project has the
            project accession NZ_PGCL00000000.  This version of the project
            (01) has the accession number NZ_PGCL01000000, and consists of
            sequences PGCL01000001-PGCL01000022.
            Bacteria and source DNA available from Prof. Mei-Chin Lai,
            Department of Life Sciences, National Chung Hsing University,
            Taichung, Taiwan.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2017
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 423.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004297185.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:12:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,382
            CDSs (total)                      :: 2,327
            Genes (coding)                    :: 2,312
            CDSs (with protein)               :: 2,312
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 4 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            Pseudo Genes (multiple problems)  :: 1 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357249
                     /organism="Methanofollis fontis"
                     /mol_type="genomic DNA"
                     /strain="FWC-SCC2"
                     /isolation_source="marine sediment from Four-Way Closure
                     Ridge"
                     /type_material="type strain of Methanofollis fontis"
                     /db_xref="taxon:2052832"
                     /geo_loc_name="Taiwan: South China Sea"
                     /collection_date="2015-11"
                     /collected_by="Sheng-Chung Chen"
                     /identified_by="Sheng-Chung Chen"
WGS         PGCL01000001-PGCL01000022
WGS_SCAFLD  NZ_PGCL01000001-NZ_PGCL01000022
//
LOCUS       NZ_LHQS01000000      2750372 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanoculleus taiwanensis strain CYW4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LHQS00000000
VERSION     NZ_LHQS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03856099
            Assembly: GCF_004102725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus taiwanensis
  ORGANISM  Methanoculleus taiwanensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2750372)
  AUTHORS   Weng,C.Y., Chen,S.C., Lai,M.C., Wu,S.Y., Lin,S., Yang,T.F. and
            Chen,P.C.
  TITLE     Methanoculleus taiwanensis sp. nov., a methanogen isolated from
            deep marine sediment at the deformation front area near Taiwan
  JOURNAL   Int J Syst Evol Microbiol 65 (Pt 3), 1044-1049 (2015)
   PUBMED   25575827
REFERENCE   2  (bases 1 to 2750372)
  AUTHORS   Chen,S.-C., Weng,C.-Y. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2015) Department of Life Sciences, National Chung
            Hsing University, 250 Kuo Kuang Rd, Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LHQS00000000.1.
            The Methanoculleus taiwanensis whole genome shotgun (WGS) project
            has the project accession NZ_LHQS00000000.  This version of the
            project (01) has the accession number NZ_LHQS01000000, and consists
            of sequences LHQS01000001-LHQS01000012.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 31-DEC-2014
            Assembly Method        :: CLC Genomic Workbench v. v7.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 509.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004102725.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:11:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,745
            CDSs (total)                      :: 2,688
            Genes (coding)                    :: 2,680
            CDSs (with protein)               :: 2,680
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 2 of 8
            Pseudo Genes (incomplete)         :: 6 of 8
            Pseudo Genes (internal stop)      :: 3 of 8
            Pseudo Genes (multiple problems)  :: 2 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750372
                     /organism="Methanoculleus taiwanensis"
                     /mol_type="genomic DNA"
                     /strain="CYW4"
                     /isolation_source="marine sediment 68-114 cm below the
                     seafloor around the deformation front 1624 m below sea
                     level offshore of south-western Taiwan"
                     /culture_collection="NBRC:110782"
                     /type_material="type strain of Methanoculleus taiwanensis"
                     /db_xref="taxon:1550565"
                     /geo_loc_name="Taiwan"
                     /lat_lon="21.9675 N 119.72783333 E"
                     /collection_date="2011-05-24"
                     /collected_by="Ding-Ju Chen"
                     /identified_by="Chieh-Yin Weng, Mei-Chin Lai"
WGS         LHQS01000001-LHQS01000012
WGS_SCAFLD  NZ_LHQS01000001-NZ_LHQS01000012
//
LOCUS       NZ_QPND01000000      4606068 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Saliphagus sp. LR7, whole genome shotgun sequencing project.
ACCESSION   NZ_QPND00000000
VERSION     NZ_QPND00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09694357
            Assembly: GCF_003344565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saliphagus sp. LR7
  ORGANISM  Saliphagus sp. LR7
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Saliphagus.
REFERENCE   1  (bases 1 to 4606068)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a subterranean rock
            salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4606068)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2018) Department of Biology, Anhui University,
            No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPND00000000.1.
            The Saliphagus sp. LR7 whole genome shotgun (WGS) project has the
            project accession NZ_QPND00000000.  This version of the project
            (01) has the accession number NZ_QPND01000000, and consists of
            sequences QPND01000001-QPND01000107.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003344565.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 01:36:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,746
            CDSs (total)                      :: 4,681
            Genes (coding)                    :: 4,501
            CDSs (with protein)               :: 4,501
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 180
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 180
            Pseudo Genes (frameshifted)       :: 49 of 180
            Pseudo Genes (incomplete)         :: 152 of 180
            Pseudo Genes (internal stop)      :: 27 of 180
            Pseudo Genes (multiple problems)  :: 43 of 180
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4606068
                     /organism="Saliphagus sp. LR7"
                     /mol_type="genomic DNA"
                     /strain="LR7"
                     /isolation_source="Salt mine"
                     /culture_collection="CGMCC:1.16165"
                     /db_xref="taxon:2282654"
                     /geo_loc_name="China: Yunnan"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
                     /identified_by="Shaoxing Chen"
WGS         QPND01000001-QPND01000107
WGS_SCAFLD  NZ_QPND01000001-NZ_QPND01000107
//
LOCUS       NZ_SHMP01000000      4256545 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrinema hispanicum strain DSM 18328, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SHMP00000000
VERSION     NZ_SHMP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05443124
            Assembly: GCF_004217335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema hispanicum
  ORGANISM  Natrinema hispanicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4256545)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase
            II (KMG-II): from individual species to whole genera
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4256545)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SHMP00000000.1.
            The Natrinema hispanicum whole genome shotgun (WGS) project has the
            project accession NZ_SHMP00000000.  This version of the project
            (01) has the accession number NZ_SHMP01000000, and consists of
            sequences SHMP01000001-SHMP01000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtlink/6.0.0.47835, HGAP 4
                                      (0.2.1)
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 711.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004217335.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:18:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,262
            CDSs (total)                      :: 4,185
            Genes (coding)                    :: 3,992
            CDSs (with protein)               :: 3,992
            Genes (RNA)                       :: 77
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 193
            CDSs (without protein)            :: 193
            Pseudo Genes (ambiguous residues) :: 0 of 193
            Pseudo Genes (frameshifted)       :: 117 of 193
            Pseudo Genes (incomplete)         :: 98 of 193
            Pseudo Genes (internal stop)      :: 17 of 193
            Pseudo Genes (multiple problems)  :: 32 of 193
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4256545
                     /organism="Natrinema hispanicum"
                     /mol_type="genomic DNA"
                     /strain="DSM 18328"
                     /culture_collection="DSM:18328"
                     /type_material="type strain of Haloterrigena hispanica"
                     /db_xref="taxon:392421"
WGS         SHMP01000001-SHMP01000011
WGS_SCAFLD  NZ_SHMP01000001-NZ_SHMP01000011
//
LOCUS       NZ_BFAX01000000      1308147 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanofervidicoccus abyssi strain HHB, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BFAX00000000
VERSION     NZ_BFAX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00112196
            Assembly: GCF_004310395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanofervidicoccus abyssi
  ORGANISM  Methanofervidicoccus abyssi
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanofervidicoccus.
REFERENCE   1
  AUTHORS   Sakai,S., Takaki,Y., Miyazaki,M., Ogawara,M., Yanagawa,K.,
            Miyazaki,J. and Takai,K.
  TITLE     Methanofervidicoccus abyssi gen. nov., sp. nov., a hydrogenotrophic
            methanogen, isolated from a hydrothermal vent chimney in the
            Mid-Cayman Spreading Center, the Caribbean Sea
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 1225-1230 (2019)
   PUBMED   30843780
  REMARK    DOI:10.1099/ijsem.0.003297
REFERENCE   2  (bases 1 to 1308147)
  AUTHORS   Takaki,Y. and Sakai,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2018) Contact:Yoshihiro Takaki Japan Agency for
            Maine-Earth Science and Technology, Department of Subsurface
            Geobiological Analysis and Research; 2-15 Natsushima-cho, Yokosuka,
            Kanagawa 237-0026, Japan URL :http://www.jamstec.go.jp
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BFAX00000000.1.
            The Methanofervidicoccus abyssi whole genome shotgun (WGS) project
            has the project accession NZ_BFAX00000000.  This version of the
            project (01) has the accession number NZ_BFAX01000000, and consists
            of sequences BFAX01000001-BFAX01000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC genomic workbench v. 10.0
            Genome Coverage       :: 171X
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004310395.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:19:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,297
            CDSs (total)                      :: 1,255
            Genes (coding)                    :: 1,236
            CDSs (with protein)               :: 1,236
            Genes (RNA)                       :: 42
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 10 of 19
            Pseudo Genes (incomplete)         :: 12 of 19
            Pseudo Genes (internal stop)      :: 2 of 19
            Pseudo Genes (multiple problems)  :: 4 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1308147
                     /organism="Methanofervidicoccus abyssi"
                     /mol_type="genomic DNA"
                     /strain="HHB"
                     /isolation_source="hydrothermal vent chimney"
                     /type_material="type strain of Methanofervidicoccus
                     abyssi"
                     /db_xref="taxon:2082189"
                     /geo_loc_name="Atlantic Ocean:Caribbean Sea, Cayman
                     trench"
                     /lat_lon="18.3764 N 81.7982 W"
                     /collection_date="2013-06"
WGS         BFAX01000001-BFAX01000005
WGS_SCAFLD  NZ_BFAX01000001-NZ_BFAX01000005
//
LOCUS       NZ_SHMR01000000      3663083 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrinema altunense strain 4.1R, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SHMR00000000
VERSION     NZ_SHMR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10643274
            Assembly: GCF_004209855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema altunense
  ORGANISM  Natrinema altunense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3663083)
  AUTHORS   Najjari,A., Youssef,N., Ben Dhia,O., Ferjani,R., El Hidri,D.,
            Ouzari,H.I. and Cherif,A.
  TITLE     Genome analysis provides insights into bioremediation
            potentialities and Haloocin production by Natrinema altunense
            strain 4.1R isolated from Chott Douz in Tunisian desert
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3663083)
  AUTHORS   Najjari,A., Youssef,N., Ben Dhia,O., Ferjani,R., El Hidri,D.,
            Ouzari,H.I. and Cherif,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2019) Biology, LMBA, 20, Tunis 2092, Tunisia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SHMR00000000.1.
            The Natrinema altunense whole genome shotgun (WGS) project has the
            project accession NZ_SHMR00000000.  This version of the project
            (01) has the accession number NZ_SHMR01000000, and consists of
            sequences SHMR01000001-SHMR01000012.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004209855.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:23:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,718
            CDSs (total)                      :: 3,663
            Genes (coding)                    :: 3,567
            CDSs (with protein)               :: 3,567
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 29 of 96
            Pseudo Genes (incomplete)         :: 77 of 96
            Pseudo Genes (internal stop)      :: 15 of 96
            Pseudo Genes (multiple problems)  :: 21 of 96
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3663083
                     /organism="Natrinema altunense"
                     /mol_type="genomic DNA"
                     /strain="4.1R"
                     /isolation_source="salt crust"
                     /db_xref="taxon:222984"
                     /geo_loc_name="Tunisia: Douz, Sabkhet El Naouel"
                     /collection_date="2010"
WGS         SHMR01000001-SHMR01000012
WGS_SCAFLD  NZ_SHMR01000001-NZ_SHMR01000012
//
LOCUS       NZ_SNYS01000000      1783124 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanimicrococcus blatticola strain DSM 13328, whole genome
            shotgun sequencing project.
ACCESSION   NZ_SNYS00000000
VERSION     NZ_SNYS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08769569
            Assembly: GCF_004363215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanimicrococcus blatticola
  ORGANISM  Methanimicrococcus blatticola
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanimicrococcus.
REFERENCE   1  (bases 1 to 1783124)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1783124)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNYS00000000.1.
            The Methanimicrococcus blatticola whole genome shotgun (WGS)
            project has the project accession NZ_SNYS00000000.  This version of
            the project (01) has the accession number NZ_SNYS01000000, and
            consists of sequences SNYS01000001-SNYS01000013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 603.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004363215.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:55:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,672
            CDSs (total)                      :: 1,621
            Genes (coding)                    :: 1,606
            CDSs (with protein)               :: 1,606
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 6 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783124
                     /organism="Methanimicrococcus blatticola"
                     /mol_type="genomic DNA"
                     /strain="DSM 13328"
                     /culture_collection="DSM:13328"
                     /type_material="type strain of Methanimicrococcus
                     blatticola"
                     /db_xref="taxon:91560"
WGS         SNYS01000001-SNYS01000013
WGS_SCAFLD  NZ_SNYS01000001-NZ_SNYS01000013
//
LOCUS       NZ_QXIK01000000      4544431 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. Atlit-7R, whole genome shotgun sequencing project.
ACCESSION   NZ_QXIK00000000
VERSION     NZ_QXIK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668315
            Assembly: GCF_003666065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. Atlit-7R
  ORGANISM  Haloarcula sp. Atlit-7R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4544431)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4544431)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXIK00000000.1.
            The Haloarcula sp. Atlit-7R whole genome shotgun (WGS) project has
            the project accession NZ_QXIK00000000.  This version of the project
            (01) has the accession number NZ_QXIK01000000, and consists of
            sequences QXIK01000001-QXIK01000136.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 57x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003666065.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:54:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,784
            CDSs (total)                      :: 4,696
            Genes (coding)                    :: 4,553
            CDSs (with protein)               :: 4,553
            Genes (RNA)                       :: 88
            rRNAs                             :: 4, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2, 6 (5S, 16S)
            tRNAs                             :: 75
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 143
            CDSs (without protein)            :: 143
            Pseudo Genes (ambiguous residues) :: 0 of 143
            Pseudo Genes (frameshifted)       :: 40 of 143
            Pseudo Genes (incomplete)         :: 110 of 143
            Pseudo Genes (internal stop)      :: 23 of 143
            Pseudo Genes (multiple problems)  :: 26 of 143
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4544431
                     /organism="Haloarcula sp. Atlit-7R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-7R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282125"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QXIK01000001-QXIK01000136
WGS_SCAFLD  NZ_QXIK01000001-NZ_QXIK01000136
//
LOCUS       NZ_RDQG01000000      3610003 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halalkalicoccus subterraneus strain GSM28, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RDQG00000000
VERSION     NZ_RDQG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10255636
            Assembly: GCF_003697815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus subterraneus
  ORGANISM  Halalkalicoccus subterraneus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 3610003)
  AUTHORS   Chen,S.
  TITLE     A halophilic archaeon isolated from a rock salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3610003)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2018) Department of Biology, Anhui University,
            No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RDQG00000000.1.
            The Halalkalicoccus subterraneus whole genome shotgun (WGS) project
            has the project accession NZ_RDQG00000000.  This version of the
            project (01) has the accession number NZ_RDQG01000000, and consists
            of sequences RDQG01000001-RDQG01000101.
            Bacteria and source DNA available from Salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003697815.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:56:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,914
            CDSs (total)                      :: 3,853
            Genes (coding)                    :: 3,744
            CDSs (with protein)               :: 3,744
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 23 of 109
            Pseudo Genes (incomplete)         :: 90 of 109
            Pseudo Genes (internal stop)      :: 11 of 109
            Pseudo Genes (multiple problems)  :: 13 of 109
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3610003
                     /organism="Halalkalicoccus subterraneus"
                     /mol_type="genomic DNA"
                     /strain="GSM28"
                     /isolation_source="Salt mine"
                     /culture_collection="CGMCC:1.16344"
                     /type_material="type material of Halalkalicoccus
                     subterraneus"
                     /db_xref="taxon:2675002"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="25.86 N 101.10 E"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
                     /identified_by="Shaoxing Chen"
WGS         RDQG01000001-RDQG01000101
WGS_SCAFLD  NZ_RDQG01000001-NZ_RDQG01000101
//
LOCUS       NZ_QMDW01000000      3009688 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halonotius pteroides strain CECT 7525, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QMDW00000000
VERSION     NZ_QMDW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09473900
            Assembly: GCF_003605635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halonotius pteroides
  ORGANISM  Halonotius pteroides
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halonotius.
REFERENCE   1  (bases 1 to 3009688)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halonotius sp. F13-13 a new haloarchaeeon isolated from a solar
            saltern from Isla Cristina, Huelva, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3009688)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2018) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QMDW00000000.1.
            The Halonotius pteroides whole genome shotgun (WGS) project has the
            project accession NZ_QMDW00000000.  This version of the project
            (01) has the accession number NZ_QMDW01000000, and consists of
            sequences QMDW01000001-QMDW01000115.
            Bacteria and source DNA available from CECT.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 421.88x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003605635.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 02:58:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,159
            CDSs (total)                      :: 3,107
            Genes (coding)                    :: 3,012
            CDSs (with protein)               :: 3,012
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 16 of 95
            Pseudo Genes (incomplete)         :: 79 of 95
            Pseudo Genes (internal stop)      :: 14 of 95
            Pseudo Genes (multiple problems)  :: 13 of 95
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009688
                     /organism="Halonotius pteroides"
                     /mol_type="genomic DNA"
                     /strain="CECT 7525"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halonotius pteroides"
                     /db_xref="taxon:268735"
                     /geo_loc_name="Australia: Cheetham Salt Works, Geelong"
                     /collection_date="2004-01-01"
WGS         QMDW01000001-QMDW01000115
WGS_SCAFLD  NZ_QMDW01000001-NZ_QMDW01000115
//
LOCUS       NZ_RZNE01000000      3316667 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halomicrobium mukohataei strain ZP12-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RZNE00000000
VERSION     NZ_RZNE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10653470
            Assembly: GCF_003992375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicrobium mukohataei
  ORGANISM  Halomicrobium mukohataei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halomicrobium.
REFERENCE   1  (bases 1 to 3316667)
  AUTHORS   Sai,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-DEC-2018) School of Agricultural Equipment, Jiangsu
            University, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RZNE00000000.1.
            The Halomicrobium mukohataei whole genome shotgun (WGS) project has
            the project accession NZ_RZNE00000000.  This version of the project
            (01) has the accession number NZ_RZNE01000000, and consists of
            sequences RZNE01000001-RZNE01000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 11-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003992375.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:05:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,449
            CDSs (total)                      :: 3,393
            Genes (coding)                    :: 3,320
            CDSs (with protein)               :: 3,320
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 29 of 73
            Pseudo Genes (incomplete)         :: 63 of 73
            Pseudo Genes (internal stop)      :: 12 of 73
            Pseudo Genes (multiple problems)  :: 24 of 73
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316667
                     /organism="Halomicrobium mukohataei"
                     /mol_type="genomic DNA"
                     /strain="ZP12-2"
                     /isolation_source="saltern"
                     /db_xref="taxon:57705"
                     /geo_loc_name="China"
                     /collection_date="2016"
WGS         RZNE01000001-RZNE01000025
WGS_SCAFLD  NZ_RZNE01000001-NZ_RZNE01000025
//
LOCUS       NZ_RZND01000000      4111827 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula argentinensis strain ZP1-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RZND00000000
VERSION     NZ_RZND00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10653466
            Assembly: GCF_003992425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula argentinensis
  ORGANISM  Haloarcula argentinensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4111827)
  AUTHORS   Sai,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-DEC-2018) School of Agricultural Equipment, Jiangsu
            University, Xuefu Road, Zhenjiang, Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RZND00000000.1.
            The Haloarcula argentinensis whole genome shotgun (WGS) project has
            the project accession NZ_RZND00000000.  This version of the project
            (01) has the accession number NZ_RZND01000000, and consists of
            sequences RZND01000001-RZND01000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. Nov-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003992425.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:07:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,145
            CDSs (total)                      :: 4,086
            Genes (coding)                    :: 4,034
            CDSs (with protein)               :: 4,034
            Genes (RNA)                       :: 59
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 23S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 16 of 52
            Pseudo Genes (incomplete)         :: 39 of 52
            Pseudo Genes (internal stop)      :: 11 of 52
            Pseudo Genes (multiple problems)  :: 12 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111827
                     /organism="Haloarcula argentinensis"
                     /mol_type="genomic DNA"
                     /strain="ZP1-2"
                     /isolation_source="saltern"
                     /db_xref="taxon:43776"
                     /geo_loc_name="China"
                     /collection_date="2016"
WGS         RZND01000001-RZND01000012
WGS_SCAFLD  NZ_RZND01000001-NZ_RZND01000012
//
LOCUS       NZ_RQWN01000000      4960430 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloterrigena salifodinae strain ZY19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RQWN00000000
VERSION     NZ_RQWN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10475404
            Assembly: GCF_003977755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloterrigena salifodinae
  ORGANISM  Haloterrigena salifodinae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Haloterrigena.
REFERENCE   1  (bases 1 to 4960430)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a subterranean rock
            salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4960430)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biology, Anhui University,
            No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RQWN00000000.1.
            The Haloterrigena salifodinae whole genome shotgun (WGS) project
            has the project accession NZ_RQWN00000000.  This version of the
            project (01) has the accession number NZ_RQWN01000000, and consists
            of sequences RQWN01000001-RQWN01000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003977755.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:06:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,842
            CDSs (total)                      :: 4,783
            Genes (coding)                    :: 4,663
            CDSs (with protein)               :: 4,663
            Genes (RNA)                       :: 59
            rRNAs                             :: 5, 3 (5S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 52 of 120
            Pseudo Genes (incomplete)         :: 84 of 120
            Pseudo Genes (internal stop)      :: 31 of 120
            Pseudo Genes (multiple problems)  :: 42 of 120
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4960430
                     /organism="Haloterrigena salifodinae"
                     /mol_type="genomic DNA"
                     /strain="ZY19"
                     /isolation_source="Salt mine"
                     /culture_collection="CGMCC:1.16114"
                     /type_material="type material of Haloterrigena
                     salifodinae"
                     /db_xref="taxon:2675099"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="26.10 N 99.78 E"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
WGS         RQWN01000001-RQWN01000011
WGS_SCAFLD  NZ_RQWN01000001-NZ_RQWN01000011
//
LOCUS       NZ_SSNN01000000      4413083 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Salinigranum halophilum strain ZS-5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SSNN00000000
VERSION     NZ_SSNN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11382580
            Assembly: GCF_004916945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinigranum halophilum
  ORGANISM  Salinigranum halophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Salinigranum.
REFERENCE   1  (bases 1 to 4413083)
  AUTHORS   Cui,H.
  TITLE     Salinigranum sp. ZS-5 isolated from salor saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4413083)
  AUTHORS   Cui,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2019) Food and Biologicial Engineering, Jiangsu
            Universiry, Xuefu road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SSNN00000000.1.
            The Salinigranum halophilum whole genome shotgun (WGS) project has
            the project accession NZ_SSNN00000000.  This version of the project
            (01) has the accession number NZ_SSNN01000000, and consists of
            sequences SSNN01000001-SSNN01000013.
            Bacteria and source DNA available from Jiangsu University, School
            of Food and Biologicol Engineering.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. AUGUST-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004916945.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:56:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,454
            CDSs (total)                      :: 4,401
            Genes (coding)                    :: 4,309
            CDSs (with protein)               :: 4,309
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 23 of 92
            Pseudo Genes (incomplete)         :: 76 of 92
            Pseudo Genes (internal stop)      :: 15 of 92
            Pseudo Genes (multiple problems)  :: 20 of 92
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4413083
                     /organism="Salinigranum halophilum"
                     /mol_type="genomic DNA"
                     /strain="ZS-5"
                     /isolation_source="Soil sample in saltern"
                     /db_xref="taxon:2565931"
                     /geo_loc_name="China: Zhejiang province"
                     /collection_date="2012-10"
WGS         SSNN01000001-SSNN01000013
WGS_SCAFLD  NZ_SSNN01000001-NZ_SSNN01000013
//
LOCUS       NZ_SSNM01000000      4403890 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Salinigranum halophilum strain DYF38, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SSNM00000000
VERSION     NZ_SSNM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11382565
            Assembly: GCF_004916935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinigranum halophilum
  ORGANISM  Salinigranum halophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Salinigranum.
REFERENCE   1  (bases 1 to 4403890)
  AUTHORS   Cui,H.
  TITLE     Salinigranum sp. DYF38 isolated from saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4403890)
  AUTHORS   Cui,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2019) Food and Biologicial Engineering, Jiangsu
            Universiry, Xuefu road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SSNM00000000.1.
            The Salinigranum halophilum whole genome shotgun (WGS) project has
            the project accession NZ_SSNM00000000.  This version of the project
            (01) has the accession number NZ_SSNM01000000, and consists of
            sequences SSNM01000001-SSNM01000020.
            Bacteria and source DNA available from Jiangsu University, School
            of Food and Biologicol Engineering.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. JULY-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004916935.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:03:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,412
            CDSs (total)                      :: 4,361
            Genes (coding)                    :: 4,293
            CDSs (with protein)               :: 4,293
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 17 of 68
            Pseudo Genes (incomplete)         :: 53 of 68
            Pseudo Genes (internal stop)      :: 12 of 68
            Pseudo Genes (multiple problems)  :: 13 of 68
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4403890
                     /organism="Salinigranum halophilum"
                     /mol_type="genomic DNA"
                     /strain="DYF38"
                     /isolation_source="soil from saltern"
                     /db_xref="taxon:2565931"
                     /geo_loc_name="China: Shandong province"
                     /collection_date="2016-06"
WGS         SSNM01000001-SSNM01000020
WGS_SCAFLD  NZ_SSNM01000001-NZ_SSNM01000020
//
LOCUS       NZ_SRSG01000000      3414481 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halalkalirubrum salinum strain N1521, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SRSG00000000
VERSION     NZ_SRSG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11321757
            Assembly: GCF_005543295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalirubrum salinum
  ORGANISM  Halalkalirubrum salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halalkalirubrum.
REFERENCE   1  (bases 1 to 3414481)
  AUTHORS   Zuo,Z.
  TITLE     Haloalkalirubrum tibetensis N1521 gen. nov., sp. nov., a halophilic
            archaeon isolated from saline lake in Tibet
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3414481)
  AUTHORS   Zuo,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2019) State Key Laboratory of Microbial
            Resources, Institute of Microbiology, Chinese Academy of Sciences,
            No. 1 Beichen West Road, Chaoyang District, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SRSG00000000.1.
            The Halalkalirubrum salinum whole genome shotgun (WGS) project has
            the project accession NZ_SRSG00000000.  This version of the project
            (01) has the accession number NZ_SRSG01000000, and consists of
            sequences SRSG01000001-SRSG01000062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 420.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005543295.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:07:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,467
            CDSs (total)                      :: 3,413
            Genes (coding)                    :: 3,340
            CDSs (with protein)               :: 3,340
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 18 of 73
            Pseudo Genes (incomplete)         :: 59 of 73
            Pseudo Genes (internal stop)      :: 13 of 73
            Pseudo Genes (multiple problems)  :: 14 of 73
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3414481
                     /organism="Halalkalirubrum salinum"
                     /mol_type="genomic DNA"
                     /strain="N1521"
                     /isolation_source="saline lake salinity of 23%, pH 8"
                     /type_material="type strain of Halalkalirubrum salinum"
                     /db_xref="taxon:2563889"
                     /geo_loc_name="China: Tibet"
                     /collection_date="2016-10-16"
WGS         SRSG01000001-SRSG01000062
WGS_SCAFLD  NZ_SRSG01000001-NZ_SRSG01000062
//
LOCUS       NZ_SSNL01000000      4196788 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Salinigranum halophilum strain YJ-53, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SSNL00000000
VERSION     NZ_SSNL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11382603
            Assembly: GCF_007004735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinigranum halophilum
  ORGANISM  Salinigranum halophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Salinigranum.
REFERENCE   1  (bases 1 to 4196788)
  AUTHORS   Cui,H.
  TITLE     Salinigranum sp. YJ-53 isolated from solar saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4196788)
  AUTHORS   Cui,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2019) Food and Biologicial Engineering, Jiangsu
            University, Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SSNL00000000.1.
            The Salinigranum halophilum whole genome shotgun (WGS) project has
            the project accession NZ_SSNL00000000.  This version of the project
            (01) has the accession number NZ_SSNL01000000, and consists of
            sequences SSNL01000001-SSNL01000012.
            Bacteria and source DNA available from Jiangsu University, School
            of Food and Biologicol Engineering.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. AUGUST-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007004735.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:37:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,208
            CDSs (total)                      :: 4,154
            Genes (coding)                    :: 4,096
            CDSs (with protein)               :: 4,096
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 12 of 58
            Pseudo Genes (incomplete)         :: 49 of 58
            Pseudo Genes (internal stop)      :: 5 of 58
            Pseudo Genes (multiple problems)  :: 8 of 58
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4196788
                     /organism="Salinigranum halophilum"
                     /mol_type="genomic DNA"
                     /strain="YJ-53"
                     /isolation_source="Soil sample in saltern"
                     /type_material="type strain of Salinigranum halophilum"
                     /db_xref="taxon:2565931"
                     /geo_loc_name="China: Guangxi province"
                     /collection_date="2012-10"
WGS         SSNL01000001-SSNL01000012
WGS_SCAFLD  NZ_ML660182
WGS_SCAFLD  NZ_SSNL01000003-NZ_SSNL01000012
//
LOCUS       NZ_CABPDC010000000   1610769 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate MGYG-HGUT-04283,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CABPDC000000000
VERSION     NZ_CABPDC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5853790
            Assembly: GCF_902406285.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (human gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1610769)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABPDC000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CABPDC000000000.  This version
            of the project (01) has the accession number NZ_CABPDC010000000,
            and consists of sequences CABPDC010000001-CABPDC010000014.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902406285.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:46:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,655
            CDSs (total)                      :: 1,617
            Genes (coding)                    :: 1,607
            CDSs (with protein)               :: 1,607
            Genes (RNA)                       :: 38
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 3 of 10
            Pseudo Genes (incomplete)         :: 7 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610769
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-04283"
                     /isolation_source="human gut"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CABPDC010000001-CABPDC010000014
WGS_SCAFLD  NZ_CABPDC010000001-NZ_CABPDC010000014
//
LOCUS       NZ_CABITY010000000   3948311 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula hispanica isolate KTF12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CABITY000000000
VERSION     NZ_CABITY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5841876
            Sequence Read Archive: ERR3464405
            Assembly: GCF_902209435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula hispanica
  ORGANISM  Haloarcula hispanica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Wilson,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2019) University of York, Biophysical Imaging and
            Spectroscopy Lab, Department of Physics, Heslington Lane,
            Heslington, York, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABITY000000000.1.
            The Haloarcula hispanica whole genome shotgun (WGS) project has the
            project accession NZ_CABITY000000000.  This version of the project
            (01) has the accession number NZ_CABITY010000000, and consists of
            sequences CABITY010000001-CABITY010000043.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902209435.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:45:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,031
            CDSs (total)                      :: 3,970
            Genes (coding)                    :: 3,914
            CDSs (with protein)               :: 3,914
            Genes (RNA)                       :: 61
            rRNAs                             :: 5, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 3, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 17 of 56
            Pseudo Genes (incomplete)         :: 45 of 56
            Pseudo Genes (internal stop)      :: 8 of 56
            Pseudo Genes (multiple problems)  :: 14 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3948311
                     /organism="Haloarcula hispanica"
                     /mol_type="genomic DNA"
                     /isolate="KTF12"
                     /isolation_source="Great Salt Lake, North Arm"
                     /db_xref="taxon:51589"
WGS         CABITY010000001-CABITY010000043
WGS_SCAFLD  NZ_CABITY010000001-NZ_CABITY010000043
//
LOCUS       NZ_SDJP01000000      3629284 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum amylolyticum strain ZC67, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SDJP00000000
VERSION     NZ_SDJP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10782550
            Assembly: GCF_004114995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum amylolyticum
  ORGANISM  Halorubrum amylolyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3629284)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a subterranean rock
            salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3629284)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2019) Department of Biology, Anhui University,
            No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SDJP00000000.1.
            The Halorubrum amylolyticum whole genome shotgun (WGS) project has
            the project accession NZ_SDJP00000000.  This version of the project
            (01) has the accession number NZ_SDJP01000000, and consists of
            sequences SDJP01000001-SDJP01000075.
            Bacteria and source DNA available from Salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004114995.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:14:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,689
            CDSs (total)                      :: 3,625
            Genes (coding)                    :: 3,443
            CDSs (with protein)               :: 3,443
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 62 of 182
            Pseudo Genes (incomplete)         :: 145 of 182
            Pseudo Genes (internal stop)      :: 26 of 182
            Pseudo Genes (multiple problems)  :: 45 of 182
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3629284
                     /organism="Halorubrum amylolyticum"
                     /mol_type="genomic DNA"
                     /strain="ZC67"
                     /isolation_source="Salt mine"
                     /type_material="type material of Halorubrum amylolyticum"
                     /db_xref="taxon:2508724"
                     /geo_loc_name="China: Yunnan"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
WGS         SDJP01000001-SDJP01000075
WGS_SCAFLD  NZ_SDJP01000001-NZ_SDJP01000075
//
LOCUS       NZ_QPLU01000000      3909350 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Atlit-9R, whole genome shotgun sequencing project.
ACCESSION   NZ_QPLU00000000
VERSION     NZ_QPLU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668317
            Assembly: GCF_003666005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Atlit-9R
  ORGANISM  Halorubrum sp. Atlit-9R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3909350)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3909350)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPLU00000000.1.
            The Halorubrum sp. Atlit-9R whole genome shotgun (WGS) project has
            the project accession NZ_QPLU00000000.  This version of the project
            (01) has the accession number NZ_QPLU01000000, and consists of
            sequences QPLU01000001-QPLU01000209.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 139x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003666005.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:18:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,031
            CDSs (total)                      :: 3,968
            Genes (coding)                    :: 3,886
            CDSs (with protein)               :: 3,886
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 55
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 14 of 82
            Pseudo Genes (incomplete)         :: 67 of 82
            Pseudo Genes (internal stop)      :: 12 of 82
            Pseudo Genes (multiple problems)  :: 11 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909350
                     /organism="Halorubrum sp. Atlit-9R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-9R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282127"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QPLU01000001-QPLU01000209
WGS_SCAFLD  NZ_QPLU01000001-NZ_QPLU01000209
//
LOCUS       NZ_QPLS01000000      3506786 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. Atlit-28R, whole genome shotgun sequencing project.
ACCESSION   NZ_QPLS00000000
VERSION     NZ_QPLS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668319
            Assembly: GCF_003665955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. Atlit-28R
  ORGANISM  Halorubrum sp. Atlit-28R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3506786)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3506786)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPLS00000000.1.
            The Halorubrum sp. Atlit-28R whole genome shotgun (WGS) project has
            the project accession NZ_QPLS00000000.  This version of the project
            (01) has the accession number NZ_QPLS01000000, and consists of
            sequences QPLS01000001-QPLS01000324.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 85x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003665955.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:18:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,675
            CDSs (total)                      :: 3,614
            Genes (coding)                    :: 3,421
            CDSs (with protein)               :: 3,421
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 193
            CDSs (without protein)            :: 193
            Pseudo Genes (ambiguous residues) :: 0 of 193
            Pseudo Genes (frameshifted)       :: 36 of 193
            Pseudo Genes (incomplete)         :: 169 of 193
            Pseudo Genes (internal stop)      :: 22 of 193
            Pseudo Genes (multiple problems)  :: 29 of 193
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3506786
                     /organism="Halorubrum sp. Atlit-28R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-28R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282129"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QPLS01000001-QPLS01000324
WGS_SCAFLD  NZ_QPLS01000001-NZ_QPLS01000324
//
LOCUS       NZ_QPLQ01000000      4133138 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. Atlit-47R, whole genome shotgun sequencing project.
ACCESSION   NZ_QPLQ00000000
VERSION     NZ_QPLQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09668322
            Assembly: GCF_003665985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. Atlit-47R
  ORGANISM  Haloarcula sp. Atlit-47R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4133138)
  AUTHORS   Turgeman-Grott,I.
  TITLE     Pervasive acquisition of CRISPR memory from multiple replicons
            driven by inter-species mating of archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4133138)
  AUTHORS   Altman,N. and Turgeman-Grott,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2018) Molecular Microbiology and Biotechnology,
            Tel Aviv University, Chaim Levanon, Tel Aviv 69000, Israel
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPLQ00000000.1.
            The Haloarcula sp. Atlit-47R whole genome shotgun (WGS) project has
            the project accession NZ_QPLQ00000000.  This version of the project
            (01) has the accession number NZ_QPLQ01000000, and consists of
            sequences QPLQ01000001-QPLQ01000114.
            Bacteria available from Gophna lab, Tel Aviv University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2016
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003665985.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:19:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,317
            CDSs (total)                      :: 4,257
            Genes (coding)                    :: 4,163
            CDSs (with protein)               :: 4,163
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 1, 6 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 17 of 94
            Pseudo Genes (incomplete)         :: 81 of 94
            Pseudo Genes (internal stop)      :: 11 of 94
            Pseudo Genes (multiple problems)  :: 14 of 94
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4133138
                     /organism="Haloarcula sp. Atlit-47R"
                     /mol_type="genomic DNA"
                     /strain="Atlit-47R"
                     /isolation_source="summer tide-pools"
                     /db_xref="taxon:2282132"
                     /geo_loc_name="Israel: Atlit coast"
                     /lat_lon="32.24 N 34.52 E"
                     /collection_date="2014"
WGS         QPLQ01000001-QPLQ01000114
WGS_SCAFLD  NZ_QPLQ01000001-NZ_QPLQ01000114
//
LOCUS       NZ_RZIG01000000      3572369 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula hispanica strain 18.1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RZIG00000000
VERSION     NZ_RZIG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10644066
            Assembly: GCF_004150385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula hispanica
  ORGANISM  Haloarcula hispanica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3572369)
  AUTHORS   Najjari,A., Ben Dhia,O., Ferjani,R., Mahjoubi,M., Sghaier,H.,
            Elshahed,M., Ouzari,H.I., Cherid,A. and Youssef,N.
  TITLE     Draft genome sequence of Haloarcula hispinica strain 18.1, an
            halophilic archaeon isolated from Chott El Jerid of Southern
            Tunisia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3572369)
  AUTHORS   Najjari,A., Ben Dhia,O., Ferjani,R., Mahjoubi,M., Sghaier,H.,
            Elshahed,M., Ouzari,H.I., Cherid,A. and Youssef,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2018) Biology, LMBA, 20, Tunis 2092, Tunisia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RZIG00000000.1.
            The Haloarcula hispanica whole genome shotgun (WGS) project has the
            project accession NZ_RZIG00000000.  This version of the project
            (01) has the accession number NZ_RZIG01000000, and consists of
            sequences RZIG01000001-RZIG01000007.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004150385.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:17:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,802
            CDSs (total)                      :: 3,752
            Genes (coding)                    :: 3,554
            CDSs (with protein)               :: 3,554
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 198
            CDSs (without protein)            :: 198
            Pseudo Genes (ambiguous residues) :: 0 of 198
            Pseudo Genes (frameshifted)       :: 44 of 198
            Pseudo Genes (incomplete)         :: 160 of 198
            Pseudo Genes (internal stop)      :: 8 of 198
            Pseudo Genes (multiple problems)  :: 14 of 198
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572369
                     /organism="Haloarcula hispanica"
                     /mol_type="genomic DNA"
                     /strain="18.1"
                     /isolation_source="salt crust"
                     /db_xref="taxon:51589"
                     /geo_loc_name="Tunisia: Touzeur, Chott El Djerid"
                     /collection_date="2010"
WGS         RZIG01000001-RZIG01000007
WGS_SCAFLD  NZ_RZIG01000001-NZ_RZIG01000007
//
LOCUS       NZ_RZHH01000000      3993819 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halogeometricum borinquense strain N11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RZHH00000000
VERSION     NZ_RZHH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10643321
            Assembly: GCF_004150395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum borinquense
  ORGANISM  Halogeometricum borinquense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1  (bases 1 to 3993819)
  AUTHORS   Najjari,A., Youssef,N., Fhoula,I., Ben Dhia,O., Mahjoubi,M.,
            Ouzari,H.I. and Cherif,A.
  TITLE     Genome analysis provides insights into bioremediation
            potentialities of Halogeometricum borinquense strain N11
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3993819)
  AUTHORS   Najjari,A., Youssef,N., Fhoula,I., Ben Dhia,O., Mahjoubi,M.,
            Ouzari,H.I. and Cherif,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-DEC-2018) Biology, LMBA, 20, Tunis 2092, Tunisia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RZHH00000000.1.
            The Halogeometricum borinquense whole genome shotgun (WGS) project
            has the project accession NZ_RZHH00000000.  This version of the
            project (01) has the accession number NZ_RZHH01000000, and consists
            of sequences RZHH01000001-RZHH01000012.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004150395.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:18:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,131
            CDSs (total)                      :: 4,076
            Genes (coding)                    :: 3,931
            CDSs (with protein)               :: 3,931
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 32 of 145
            Pseudo Genes (incomplete)         :: 115 of 145
            Pseudo Genes (internal stop)      :: 14 of 145
            Pseudo Genes (multiple problems)  :: 15 of 145
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993819
                     /organism="Halogeometricum borinquense"
                     /mol_type="genomic DNA"
                     /strain="N11"
                     /isolation_source="sediment"
                     /db_xref="taxon:60847"
                     /geo_loc_name="Tunisia: Touzeur, Chott El Djerid"
                     /collection_date="2010"
WGS         RZHH01000001-RZHH01000012
WGS_SCAFLD  NZ_RZHH01000001-NZ_RZHH01000012
//
LOCUS       NZ_RDFA01000000      4086895 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorientalis pallida strain F13-25, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RDFA00000000
VERSION     NZ_RDFA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10247356
            Assembly: GCF_004118325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis pallida
  ORGANISM  Halorientalis pallida
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1  (bases 1 to 4086895)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halorientalis sp. F13-25 a new haloarchaeum isolated from
            hypersaline water
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4086895)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2019) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RDFA00000000.1.
            The Halorientalis pallida whole genome shotgun (WGS) project has
            the project accession NZ_RDFA00000000.  This version of the project
            (01) has the accession number NZ_RDFA01000000, and consists of
            sequences RDFA01000001-RDFA01000023.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 427.67x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004118325.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:25:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,227
            CDSs (total)                      :: 4,173
            Genes (coding)                    :: 4,118
            CDSs (with protein)               :: 4,118
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2 (16S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 21 of 55
            Pseudo Genes (incomplete)         :: 32 of 55
            Pseudo Genes (internal stop)      :: 17 of 55
            Pseudo Genes (multiple problems)  :: 15 of 55
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4086895
                     /organism="Halorientalis pallida"
                     /mol_type="genomic DNA"
                     /strain="F13-25"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halorientalis pallida"
                     /db_xref="taxon:2479928"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06"
WGS         RDFA01000001-RDFA01000023
WGS_SCAFLD  NZ_RDFA01000001-NZ_RDFA01000023
//
LOCUS       NZ_SDIC01000000      4891127 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halegenticoccus tardaugens strain SYSU A00711, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SDIC00000000
VERSION     NZ_SDIC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08348395
            Assembly: GCF_004116405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halegenticoccus tardaugens
  ORGANISM  Halegenticoccus tardaugens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halegenticoccus.
REFERENCE   1  (bases 1 to 4891127)
  AUTHORS   Liu,B.-B., Jiao,J.-Y., Yin,X.-Q. and Li,W.-J.
  TITLE     An extremely halophilic archaeon isolated from a saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4891127)
  AUTHORS   Liu,B.-B., Jiao,J.-Y., Yin,X.-Q. and Li,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2018) School of Life Sciences, Sun Yat-Sen
            University, No. 135, Xingang West Road, Guangzhou 510275, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SDIC00000000.1.
            The Halegenticoccus tardaugens whole genome shotgun (WGS) project
            has the project accession NZ_SDIC00000000.  This version of the
            project (01) has the accession number NZ_SDIC01000000, and consists
            of sequences SDIC01000001-SDIC01000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004116405.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 03:29:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,914
            CDSs (total)                      :: 4,859
            Genes (coding)                    :: 4,677
            CDSs (with protein)               :: 4,677
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 80 of 182
            Pseudo Genes (incomplete)         :: 119 of 182
            Pseudo Genes (internal stop)      :: 50 of 182
            Pseudo Genes (multiple problems)  :: 57 of 182
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4891127
                     /organism="Halegenticoccus tardaugens"
                     /mol_type="genomic DNA"
                     /strain="SYSU A00711"
                     /isolation_source="salt lake"
                     /culture_collection="KCTC:4245"
                     /type_material="type strain of Halegenticoccus tardaugens"
                     /db_xref="taxon:2071624"
                     /geo_loc_name="China"
                     /collection_date="2015-05"
WGS         SDIC01000001-SDIC01000014
WGS_SCAFLD  NZ_SDIC01000001-NZ_SDIC01000014
//
LOCUS       NZ_SBIR01000000      3619661 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus marinus strain DLLS-82, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SBIR00000000
VERSION     NZ_SBIR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10721532
            Assembly: GCF_004521895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus marinus
  ORGANISM  Halorussus marinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 3619661)
  AUTHORS   Cui,H.-L.
  TITLE     Halophilic archaea isolated from salted brown alga Laminaria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3619661)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SBIR00000000.1.
            The Halorussus marinus whole genome shotgun (WGS) project has the
            project accession NZ_SBIR00000000.  This version of the project
            (01) has the accession number NZ_SBIR01000000, and consists of
            sequences SBIR01000001-SBIR01000026.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. MAY-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004521895.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:09:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,785
            CDSs (total)                      :: 3,727
            Genes (coding)                    :: 3,675
            CDSs (with protein)               :: 3,675
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 12 of 52
            Pseudo Genes (incomplete)         :: 40 of 52
            Pseudo Genes (internal stop)      :: 5 of 52
            Pseudo Genes (multiple problems)  :: 5 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619661
                     /organism="Halorussus marinus"
                     /mol_type="genomic DNA"
                     /strain="DLLS-82"
                     /isolation_source="isolated from salted brown alga
                     Laminaria"
                     /db_xref="taxon:2505976"
                     /geo_loc_name="China: Dalian, Liaoning Province"
                     /collection_date="2012"
WGS         SBIR01000001-SBIR01000026
WGS_SCAFLD  NZ_SBIR01000001-NZ_SBIR01000026
//
LOCUS       NZ_SRHV01000000      4467346 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halosimplex halophilum strain TH32, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SRHV00000000
VERSION     NZ_SRHV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11242085
            Assembly: GCF_004698125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosimplex halophilum
  ORGANISM  Halosimplex halophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halosimplex.
REFERENCE   1  (bases 1 to 4467346)
  AUTHORS   Tap,C. and Cui,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2019) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SRHV00000000.1.
            The Halosimplex halophilum whole genome shotgun (WGS) project has
            the project accession NZ_SRHV00000000.  This version of the project
            (01) has the accession number NZ_SRHV01000000, and consists of
            sequences SRHV01000001-SRHV01000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. DECEMBER-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004698125.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:11:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,431
            CDSs (total)                      :: 4,371
            Genes (coding)                    :: 4,335
            CDSs (with protein)               :: 4,335
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 2, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2 (5S, 16S)
            partial rRNAs                     :: 6 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 15 of 36
            Pseudo Genes (incomplete)         :: 24 of 36
            Pseudo Genes (internal stop)      :: 4 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4467346
                     /organism="Halosimplex halophilum"
                     /mol_type="genomic DNA"
                     /strain="TH32"
                     /isolation_source="hypersaline alkaline lake"
                     /type_material="type strain of Halosimplex halophilum"
                     /db_xref="taxon:2559572"
                     /geo_loc_name="China: Gobi Desert, Xinjiang"
                     /collection_date="2013-10"
WGS         SRHV01000001-SRHV01000009
WGS_SCAFLD  NZ_ML214297-NZ_ML214298
WGS_SCAFLD  NZ_SRHV01000005-NZ_SRHV01000009
//
LOCUS       NZ_SJES01000000      3868565 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halostella pelagica strain LYG-109, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SJES00000000
VERSION     NZ_SJES00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10986242
            Assembly: GCF_004762015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostella pelagica
  ORGANISM  Halostella pelagica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae; Halostella.
REFERENCE   1  (bases 1 to 3868565)
  AUTHORS   Cui,H.-L.
  TITLE     Halophilic archaea isolated from salted brown alga Laminaria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3868565)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SJES00000000.1.
            The Halostella pelagica whole genome shotgun (WGS) project has the
            project accession NZ_SJES00000000.  This version of the project
            (01) has the accession number NZ_SJES01000000, and consists of
            sequences SJES01000001-SJES01000016.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. MAY-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004762015.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:12:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,965
            CDSs (total)                      :: 3,904
            Genes (coding)                    :: 3,843
            CDSs (with protein)               :: 3,843
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 20 of 61
            Pseudo Genes (incomplete)         :: 45 of 61
            Pseudo Genes (internal stop)      :: 13 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3868565
                     /organism="Halostella pelagica"
                     /mol_type="genomic DNA"
                     /strain="LYG-109"
                     /isolation_source="isolated from salted brown alga"
                     /host="Laminaria"
                     /db_xref="taxon:2583824"
                     /geo_loc_name="China: Lianyungang, Jiangsu Province"
                     /collection_date="2017-06"
WGS         SJES01000001-SJES01000016
WGS_SCAFLD  NZ_SJES01000001-NZ_SJES01000016
//
LOCUS       NZ_SBIV01000000      3763700 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus marinus strain LYG-36, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SBIV00000000
VERSION     NZ_SBIV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10724292
            Assembly: GCF_004765795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus marinus
  ORGANISM  Halorussus marinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 3763700)
  AUTHORS   Cui,H.-L.
  TITLE     Halophilic archaea isolated from salted brown alga Laminaria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3763700)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SBIV00000000.1.
            The Halorussus marinus whole genome shotgun (WGS) project has the
            project accession NZ_SBIV00000000.  This version of the project
            (01) has the accession number NZ_SBIV01000000, and consists of
            sequences SBIV01000001-SBIV01000039.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. MAY-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004765795.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:18:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,894
            CDSs (total)                      :: 3,812
            Genes (coding)                    :: 3,759
            CDSs (with protein)               :: 3,759
            Genes (RNA)                       :: 82
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 12 of 53
            Pseudo Genes (incomplete)         :: 47 of 53
            Pseudo Genes (internal stop)      :: 4 of 53
            Pseudo Genes (multiple problems)  :: 10 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3763700
                     /organism="Halorussus marinus"
                     /mol_type="genomic DNA"
                     /strain="LYG-36"
                     /host="Laminaria (salted brown alga)"
                     /type_material="type strain of Halorussus marinus"
                     /db_xref="taxon:2505976"
                     /geo_loc_name="China: Lianyungang, Jiangsu Province"
                     /collection_date="2017-06"
WGS         SBIV01000001-SBIV01000039
WGS_SCAFLD  NZ_ML219771-NZ_ML219772
WGS_SCAFLD  NZ_SBIV01000001-NZ_SBIV01000026
WGS_SCAFLD  NZ_SBIV01000029-NZ_SBIV01000036
WGS_SCAFLD  NZ_SBIV01000039
//
LOCUS       NZ_SMMS01000000      1978025 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus euhalobius strain WG1_MB, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMMS00000000
VERSION     NZ_SMMS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08777283
            Assembly: GCF_004340645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus euhalobius
  ORGANISM  Methanohalophilus euhalobius
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 1978025)
  AUTHORS   Wrighton,K.
  TITLE     Subsurface microbial communities from deep shales in Ohio and West
            Virginia, USA
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1978025)
  AUTHORS   Wrighton,K., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2019) Prokaryotic super group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMMS00000000.1.
            The Methanohalophilus euhalobius whole genome shotgun (WGS) project
            has the project accession NZ_SMMS00000000.  This version of the
            project (01) has the accession number NZ_SMMS01000000, and consists
            of sequence SMMS01000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 325.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004340645.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:01:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,168
            CDSs (total)                      :: 2,108
            Genes (coding)                    :: 2,065
            CDSs (with protein)               :: 2,065
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 21 of 43
            Pseudo Genes (incomplete)         :: 16 of 43
            Pseudo Genes (internal stop)      :: 18 of 43
            Pseudo Genes (multiple problems)  :: 10 of 43
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978025
                     /organism="Methanohalophilus euhalobius"
                     /mol_type="genomic DNA"
                     /strain="WG1_MB"
                     /db_xref="taxon:51203"
WGS         SMMS01000001
WGS_SCAFLD  NZ_SMMS01000001
//
LOCUS       NZ_PGGK01000000      2592212 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanolobus halotolerans strain SY-01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PGGK00000000
VERSION     NZ_PGGK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07998606
            Assembly: GCF_004745425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolobus halotolerans
  ORGANISM  Methanolobus halotolerans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 2592212)
  AUTHORS   Shen,Y., Huang,H.-H., Lai,M.-C. and Chen,S.-C.
  TITLE     Isolation and Characterization of Methanogenic Archaea from Saline
            Meromictic Lake at Siberia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2592212)
  AUTHORS   Shen,Y., Huang,H.-H., Lai,M.-C. and Chen,S.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2017) Department of Life Sciences, National Chung
            Hsing University, 145 Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PGGK00000000.1.
            The Methanolobus halotolerans whole genome shotgun (WGS) project
            has the project accession NZ_PGGK00000000.  This version of the
            project (01) has the accession number NZ_PGGK01000000, and consists
            of sequences PGGK01000001-PGGK01000045.
            Bacteria and source DNA available from Prof. Mei-Chin Lai,
            Department of Life Sciences, National Chung Hsing University,
            Taichung, Taiwan.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 386.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004745425.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:05:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,633
            CDSs (total)                      :: 2,576
            Genes (coding)                    :: 2,538
            CDSs (with protein)               :: 2,538
            Genes (RNA)                       :: 57
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 12 of 38
            Pseudo Genes (incomplete)         :: 28 of 38
            Pseudo Genes (internal stop)      :: 9 of 38
            Pseudo Genes (multiple problems)  :: 9 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2592212
                     /organism="Methanolobus halotolerans"
                     /mol_type="genomic DNA"
                     /strain="SY-01"
                     /isolation_source="lake sediment"
                     /type_material="type strain of Methanolobus halotolerans"
                     /db_xref="taxon:2052935"
                     /geo_loc_name="Russia: Lake Tus, Republic of Khakassia"
                     /collection_date="2010-07"
                     /collected_by="S.-L. Tang, A.G. Degermendzhy & D.Y.
                     Rogozin"
                     /identified_by="Ya Shen and Mei-Chin Lai"
WGS         PGGK01000001-PGGK01000045
WGS_SCAFLD  NZ_PGGK01000001-NZ_PGGK01000045
//
LOCUS       NZ_SBIT01000000      4318267 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus ruber strain YC25, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SBIT00000000
VERSION     NZ_SBIT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10721380
            Assembly: GCF_004765785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus ruber
  ORGANISM  Halorussus ruber
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4318267)
  AUTHORS   Cui,H.-L.
  TITLE     Genome sequence of Halorussus ruber YC25, isolated from an inland
            salt lake of China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4318267)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SBIT00000000.1.
            The Halorussus ruber whole genome shotgun (WGS) project has the
            project accession NZ_SBIT00000000.  This version of the project
            (01) has the accession number NZ_SBIT01000000, and consists of
            sequences SBIT01000001-SBIT01000035.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. Dec-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004765785.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:20:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,396
            CDSs (total)                      :: 4,336
            Genes (coding)                    :: 4,270
            CDSs (with protein)               :: 4,270
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 18 of 66
            Pseudo Genes (incomplete)         :: 50 of 66
            Pseudo Genes (internal stop)      :: 6 of 66
            Pseudo Genes (multiple problems)  :: 7 of 66
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4318267
                     /organism="Halorussus ruber"
                     /mol_type="genomic DNA"
                     /strain="YC25"
                     /isolation_source="an inland salt lake"
                     /type_material="type strain of Halorussus ruber"
                     /db_xref="taxon:1126238"
                     /geo_loc_name="China: Yuncheng salt lake in Shanxi"
                     /collection_date="2012"
WGS         SBIT01000001-SBIT01000035
WGS_SCAFLD  NZ_ML219768-NZ_ML219770
WGS_SCAFLD  NZ_SBIT01000001-NZ_SBIT01000002
WGS_SCAFLD  NZ_SBIT01000006-NZ_SBIT01000010
WGS_SCAFLD  NZ_SBIT01000015-NZ_SBIT01000035
//
LOCUS       NZ_CAAGTW010000000   2341365 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanococcoides sp. NM1, whole genome shotgun sequencing project.
ACCESSION   NZ_CAAGTW000000000
VERSION     NZ_CAAGTW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5522910
            Assembly: GCF_900774285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides sp. NM1
  ORGANISM  Methanococcoides sp. NM1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1
  AUTHORS   Webster,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2019) CARDIFF UNIVERSITY, Biosciences, Cardiff
            University, Cardiff School of Biosciences, Museum Avenue, Cardiff,
            Wales, CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAAGTW000000000.1.
            The Methanococcoides sp. NM1 whole genome shotgun (WGS) project has
            the project accession NZ_CAAGTW000000000.  This version of the
            project (01) has the accession number NZ_CAAGTW010000000, and
            consists of sequences CAAGTW010000001-CAAGTW010000045.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900774285.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:11:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,398
            CDSs (total)                      :: 2,339
            Genes (coding)                    :: 2,291
            CDSs (with protein)               :: 2,291
            Genes (RNA)                       :: 59
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 7 of 48
            Pseudo Genes (incomplete)         :: 31 of 48
            Pseudo Genes (internal stop)      :: 18 of 48
            Pseudo Genes (multiple problems)  :: 8 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341365
                     /organism="Methanococcoides sp. NM1"
                     /mol_type="genomic DNA"
                     /isolate="NM1"
                     /isolation_source="Sediment"
                     /db_xref="taxon:1201013"
WGS         CAAGTW010000001-CAAGTW010000045
WGS_SCAFLD  NZ_CAAGTW010000001-NZ_CAAGTW010000045
//
LOCUS       NZ_CAAGSM010000000   2500446 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanococcoides methylutens isolate DSM2657, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAAGSM000000000
VERSION     NZ_CAAGSM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5522911
            Assembly: GCF_900773915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides methylutens
  ORGANISM  Methanococcoides methylutens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1
  AUTHORS   Webster,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2019) CARDIFF UNIVERSITY, Biosciences, Cardiff
            University, Cardiff School of Biosciences, Museum Avenue, Cardiff,
            Wales, CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAAGSM000000000.1.
            The Methanococcoides methylutens whole genome shotgun (WGS) project
            has the project accession NZ_CAAGSM000000000.  This version of the
            project (01) has the accession number NZ_CAAGSM010000000, and
            consists of sequences CAAGSM010000001-CAAGSM010000036.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900773915.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:11:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,534
            CDSs (total)                      :: 2,470
            Genes (coding)                    :: 2,438
            CDSs (with protein)               :: 2,438
            Genes (RNA)                       :: 64
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 4 of 32
            Pseudo Genes (incomplete)         :: 19 of 32
            Pseudo Genes (internal stop)      :: 18 of 32
            Pseudo Genes (multiple problems)  :: 9 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500446
                     /organism="Methanococcoides methylutens"
                     /mol_type="genomic DNA"
                     /isolate="DSM2657"
                     /type_material="type strain of Methanococcoides
                     methylutens"
                     /db_xref="taxon:2226"
WGS         CAAGSM010000001-CAAGSM010000036
WGS_SCAFLD  NZ_CAAGSM010000001-NZ_CAAGSM010000036
//
LOCUS       NZ_CAAGSJ010000000   2323185 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanococcoides vulcani isolate SLH33, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAAGSJ000000000
VERSION     NZ_CAAGSJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5522912
            Assembly: GCF_900773955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides vulcani
  ORGANISM  Methanococcoides vulcani
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1
  AUTHORS   Webster,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2019) CARDIFF UNIVERSITY, Biosciences, Cardiff
            University, Cardiff School of Biosciences, Museum Avenue, Cardiff,
            Wales, CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAAGSJ000000000.1.
            The Methanococcoides vulcani whole genome shotgun (WGS) project has
            the project accession NZ_CAAGSJ000000000.  This version of the
            project (01) has the accession number NZ_CAAGSJ010000000, and
            consists of sequences CAAGSJ010000001-CAAGSJ010000029.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900773955.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:11:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,352
            CDSs (total)                      :: 2,294
            Genes (coding)                    :: 2,243
            CDSs (with protein)               :: 2,243
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 9 of 51
            Pseudo Genes (incomplete)         :: 36 of 51
            Pseudo Genes (internal stop)      :: 14 of 51
            Pseudo Genes (multiple problems)  :: 8 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323185
                     /organism="Methanococcoides vulcani"
                     /mol_type="genomic DNA"
                     /isolate="SLH33"
                     /type_material="type strain of Methanococcoides vulcani"
                     /db_xref="taxon:1353158"
WGS         CAAGSJ010000001-CAAGSJ010000029
WGS_SCAFLD  NZ_CAAGSJ010000001-NZ_CAAGSJ010000029
//
LOCUS       NZ_CAAGSW010000000   2482578 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanococcoides sp. AM1, whole genome shotgun sequencing project.
ACCESSION   NZ_CAAGSW000000000
VERSION     NZ_CAAGSW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5522909
            Assembly: GCF_900774055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides sp. AM1
  ORGANISM  Methanococcoides sp. AM1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1
  AUTHORS   Webster,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2019) CARDIFF UNIVERSITY, Biosciences, Cardiff
            University, Cardiff School of Biosciences, Museum Avenue, Cardiff,
            Wales, CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAAGSW000000000.1.
            The Methanococcoides sp. AM1 whole genome shotgun (WGS) project has
            the project accession NZ_CAAGSW000000000.  This version of the
            project (01) has the accession number NZ_CAAGSW010000000, and
            consists of sequences CAAGSW010000001-CAAGSW010000046.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900774055.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:10:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,534
            CDSs (total)                      :: 2,478
            Genes (coding)                    :: 2,452
            CDSs (with protein)               :: 2,452
            Genes (RNA)                       :: 56
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 6 of 26
            Pseudo Genes (incomplete)         :: 14 of 26
            Pseudo Genes (internal stop)      :: 13 of 26
            Pseudo Genes (multiple problems)  :: 7 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482578
                     /organism="Methanococcoides sp. AM1"
                     /mol_type="genomic DNA"
                     /isolate="AM1"
                     /isolation_source="Sediment"
                     /db_xref="taxon:1201011"
WGS         CAAGSW010000001-CAAGSW010000046
WGS_SCAFLD  NZ_CAAGSW010000001-NZ_CAAGSW010000046
//
LOCUS       NZ_SRIF01000000      5037071 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula amylovorans strain LR21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SRIF00000000
VERSION     NZ_SRIF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11269098
            Assembly: GCF_004681185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula amylovorans
  ORGANISM  Haloarcula amylovorans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 5037071)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a subterranean salt
            mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5037071)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2019) Department of Biology, Anhui University,
            No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SRIF00000000.1.
            The Haloarcula amylovorans whole genome shotgun (WGS) project has
            the project accession NZ_SRIF00000000.  This version of the project
            (01) has the accession number NZ_SRIF01000000, and consists of
            sequences SRIF01000001-SRIF01000034.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004681185.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:23:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,124
            CDSs (total)                      :: 5,072
            Genes (coding)                    :: 4,967
            CDSs (with protein)               :: 4,967
            Genes (RNA)                       :: 52
            rRNAs                             :: 3, 1 (16S, 23S)
            partial rRNAs                     :: 3, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 53 of 105
            Pseudo Genes (incomplete)         :: 73 of 105
            Pseudo Genes (internal stop)      :: 22 of 105
            Pseudo Genes (multiple problems)  :: 37 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5037071
                     /organism="Haloarcula amylovorans"
                     /mol_type="genomic DNA"
                     /strain="LR21"
                     /isolation_source="Salt mine"
                     /type_material="type strain of Haloarcula amylovorans"
                     /db_xref="taxon:2562280"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="23.40 N 101.66 E"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
WGS         SRIF01000001-SRIF01000034
WGS_SCAFLD  NZ_SRIF01000001-NZ_SRIF01000034
//
LOCUS       NZ_CAAHFB010000000   3362504 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorhabdus rudnickae isolate WSM64, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAAHFB000000000
VERSION     NZ_CAAHFB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5537954
            Assembly: GCF_900880625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorhabdus rudnickae
  ORGANISM  Halorhabdus rudnickae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorhabdus.
REFERENCE   1
  AUTHORS   D'auria,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2019) FISABIO - Public Health, Sequencing and
            Bioinformatics Service, Avda. de Catalunya 21, 46020 Valencia,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAAHFB000000000.1.
            The Halorhabdus rudnickae whole genome shotgun (WGS) project has
            the project accession NZ_CAAHFB000000000.  This version of the
            project (01) has the accession number NZ_CAAHFB010000000, and
            consists of sequences CAAHFB010000001-CAAHFB010000006.
            Halorhabdus rudnickae sp. nov., a halophilic archaeon isolated from
            a salt mine borehole in Poland.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900880625.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:29:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,454
            CDSs (total)                      :: 3,403
            Genes (coding)                    :: 3,301
            CDSs (with protein)               :: 3,301
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 69 of 102
            Pseudo Genes (internal stop)      :: 25 of 102
            Pseudo Genes (multiple problems)  :: 31 of 102
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3362504
                     /organism="Halorhabdus rudnickae"
                     /mol_type="genomic DNA"
                     /isolate="WSM64"
                     /type_material="type strain of Halorhabdus rudnickae"
                     /db_xref="taxon:1775544"
WGS         CAAHFB010000001-CAAHFB010000006
WGS_SCAFLD  NZ_CAAHFB010000001-NZ_CAAHFB010000006
//
LOCUS       NZ_SJER01000000      3745222 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halostella litorea strain DLLS-108, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SJER00000000
VERSION     NZ_SJER00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10986238
            Assembly: GCF_004785955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostella litorea
  ORGANISM  Halostella litorea
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae; Halostella.
REFERENCE   1  (bases 1 to 3745222)
  AUTHORS   Cui,H.-L.
  TITLE     Halophilic archaea isolated from salted brown alga Laminaria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3745222)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SJER00000000.1.
            The Halostella litorea whole genome shotgun (WGS) project has the
            project accession NZ_SJER00000000.  This version of the project
            (01) has the accession number NZ_SJER01000000, and consists of
            sequences SJER01000001-SJER01000014.
            Bacteria and source DNA available from School of Food and
            Biological Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. MAY-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004785955.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:29:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,968
            CDSs (total)                      :: 3,910
            Genes (coding)                    :: 3,877
            CDSs (with protein)               :: 3,877
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 9 of 33
            Pseudo Genes (incomplete)         :: 26 of 33
            Pseudo Genes (internal stop)      :: 6 of 33
            Pseudo Genes (multiple problems)  :: 8 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3745222
                     /organism="Halostella litorea"
                     /mol_type="genomic DNA"
                     /strain="DLLS-108"
                     /isolation_source="isolated from salted brown alga"
                     /host="Laminaria"
                     /type_material="type strain of Halostella litorea"
                     /db_xref="taxon:2528831"
                     /geo_loc_name="China: Dalian, Liaoning Province"
                     /collection_date="2017-06"
WGS         SJER01000001-SJER01000014
WGS_SCAFLD  NZ_ML214300
WGS_SCAFLD  NZ_SJER01000001
WGS_SCAFLD  NZ_SJER01000004-NZ_SJER01000014
//
LOCUS       NZ_OMWD01000000      2324223 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate RUG031, whole genome
            shotgun sequencing project.
ACCESSION   NZ_OMWD00000000
VERSION     NZ_OMWD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104666881
            Assembly: GCF_900314695.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            OMWD00000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_OMWD00000000.  This version of
            the project (01) has the accession number NZ_OMWD01000000, and
            consists of sequences OMWD01000001-OMWD01000061.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900314695.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 23:47:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,215
            CDSs (total)                      :: 2,179
            Genes (coding)                    :: 2,163
            CDSs (with protein)               :: 2,163
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 5 of 16
            Pseudo Genes (incomplete)         :: 8 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324223
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG031"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         OMWD01000001-OMWD01000061
WGS_SCAFLD  NZ_OMWD01000001-NZ_OMWD01000061
//
LOCUS       NZ_ONER01000000      1908031 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate RUG236, whole genome
            shotgun sequencing project.
ACCESSION   NZ_ONER00000000
VERSION     NZ_ONER00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104666888
            Assembly: GCF_900316895.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ONER00000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_ONER00000000.  This version of
            the project (01) has the accession number NZ_ONER01000000, and
            consists of sequences ONER01000001-ONER01000147.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900316895.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:07:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,983
            CDSs (total)                      :: 1,949
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 25 of 71
            Pseudo Genes (incomplete)         :: 48 of 71
            Pseudo Genes (internal stop)      :: 0 of 71
            Pseudo Genes (multiple problems)  :: 2 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908031
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG236"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         ONER01000001-ONER01000147
WGS_SCAFLD  NZ_ONER01000001-NZ_ONER01000147
//
LOCUS       NZ_OMYV01000000      2324358 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate RUG092, whole genome
            shotgun sequencing project.
ACCESSION   NZ_OMYV00000000
VERSION     NZ_OMYV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104666883
            Assembly: GCF_900315355.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            OMYV00000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_OMYV00000000.  This version of
            the project (01) has the accession number NZ_OMYV01000000, and
            consists of sequences OMYV01000001-OMYV01000086.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900315355.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 23:57:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,148
            CDSs (total)                      :: 2,114
            Genes (coding)                    :: 2,078
            CDSs (with protein)               :: 2,078
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 22 of 36
            Pseudo Genes (internal stop)      :: 3 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324358
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG092"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         OMYV01000001-OMYV01000086
WGS_SCAFLD  NZ_OMYV01000001-NZ_OMYV01000086
//
LOCUS       NZ_ONCW01000000      2487951 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate RUG186, whole genome
            shotgun sequencing project.
ACCESSION   NZ_ONCW00000000
VERSION     NZ_ONCW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104666886
            Assembly: GCF_900316425.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ONCW00000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_ONCW00000000.  This version of
            the project (01) has the accession number NZ_ONCW01000000, and
            consists of sequences ONCW01000001-ONCW01000151.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900316425.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:02:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,316
            CDSs (total)                      :: 2,284
            Genes (coding)                    :: 2,195
            CDSs (with protein)               :: 2,195
            Genes (RNA)                       :: 32
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 25 of 89
            Pseudo Genes (incomplete)         :: 66 of 89
            Pseudo Genes (internal stop)      :: 2 of 89
            Pseudo Genes (multiple problems)  :: 3 of 89
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2487951
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG186"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         ONCW01000001-ONCW01000151
WGS_SCAFLD  NZ_ONCW01000001-NZ_ONCW01000151
//
LOCUS       NZ_SBIU01000000      3933944 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus halobius strain HD8-83, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SBIU00000000
VERSION     NZ_SBIU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10721430
            Assembly: GCF_004765805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus halobius
  ORGANISM  Halorussus halobius
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 3933944)
  AUTHORS   Cui,H.-L.
  TITLE     Halophilic archaea isolated from salted brown alga Laminaria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3933944)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SBIU00000000.1.
            The Halorussus halobius whole genome shotgun (WGS) project has the
            project accession NZ_SBIU00000000.  This version of the project
            (01) has the accession number NZ_SBIU01000000, and consists of
            sequences SBIU01000001-SBIU01000018.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. MAY-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004765805.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:33:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,023
            CDSs (total)                      :: 3,967
            Genes (coding)                    :: 3,938
            CDSs (with protein)               :: 3,938
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 9 of 29
            Pseudo Genes (incomplete)         :: 23 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 6 of 29
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3933944
                     /organism="Halorussus halobius"
                     /mol_type="genomic DNA"
                     /strain="HD8-83"
                     /isolation_source="isolated from salted brown alga
                     Laminaria"
                     /type_material="type strain of Halorussus halobius"
                     /db_xref="taxon:1710537"
                     /geo_loc_name="China: Dalian, Liaoning Province"
                     /collection_date="2012"
WGS         SBIU01000001-SBIU01000018
WGS_SCAFLD  NZ_ML219773
WGS_SCAFLD  NZ_SBIU01000003-NZ_SBIU01000018
//
LOCUS       NZ_OMYG01000000      1863137 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate RUG076, whole genome
            shotgun sequencing project.
ACCESSION   NZ_OMYG00000000
VERSION     NZ_OMYG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104666882
            Assembly: GCF_900315215.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            OMYG00000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_OMYG00000000.  This version of
            the project (01) has the accession number NZ_OMYG01000000, and
            consists of sequences OMYG01000001-OMYG01000023.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900315215.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 23:58:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,662
            CDSs (total)                      :: 1,622
            Genes (coding)                    :: 1,610
            CDSs (with protein)               :: 1,610
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 11 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863137
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG076"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         OMYG01000001-OMYG01000023
WGS_SCAFLD  NZ_OMYG01000001-NZ_OMYG01000023
//
LOCUS       NZ_OMWA01000000      2431500 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate RUG018, whole genome
            shotgun sequencing project.
ACCESSION   NZ_OMWA00000000
VERSION     NZ_OMWA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104666879
            Assembly: GCF_900314615.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            OMWA00000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_OMWA00000000.  This version of
            the project (01) has the accession number NZ_OMWA01000000, and
            consists of sequences OMWA01000001-OMWA01000057.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900314615.1-RS_2024_10_22
            Annotation Date                   :: 10/22/2024 23:54:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,342
            CDSs (total)                      :: 2,306
            Genes (coding)                    :: 2,264
            CDSs (with protein)               :: 2,264
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 16 of 42
            Pseudo Genes (incomplete)         :: 25 of 42
            Pseudo Genes (internal stop)      :: 2 of 42
            Pseudo Genes (multiple problems)  :: 1 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2431500
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG018"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         OMWA01000001-OMWA01000057
WGS_SCAFLD  NZ_OMWA01000001-NZ_OMWA01000057
//
LOCUS       NZ_ONIK01000000      2281687 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate RUG338, whole genome
            shotgun sequencing project.
ACCESSION   NZ_ONIK00000000
VERSION     NZ_ONIK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104666890
            Assembly: GCF_900317865.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ONIK00000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_ONIK00000000.  This version of
            the project (01) has the accession number NZ_ONIK01000000, and
            consists of sequences ONIK01000001-ONIK01000151.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900317865.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:08:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,151
            CDSs (total)                      :: 2,114
            Genes (coding)                    :: 2,037
            CDSs (with protein)               :: 2,037
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 1 of 77
            Pseudo Genes (frameshifted)       :: 21 of 77
            Pseudo Genes (incomplete)         :: 56 of 77
            Pseudo Genes (internal stop)      :: 3 of 77
            Pseudo Genes (multiple problems)  :: 3 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2281687
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG338"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         ONIK01000001-ONIK01000151
WGS_SCAFLD  NZ_ONIK01000001-NZ_ONIK01000151
//
LOCUS       NZ_ONQL01000000      2220636 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Uncultured Methanobrevibacter sp. isolate RUG545, whole genome
            shotgun sequencing project.
ACCESSION   NZ_ONQL00000000
VERSION     NZ_ONQL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104666894
            Assembly: GCF_900319985.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      uncultured Methanobrevibacter sp.
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2018) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ONQL00000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_ONQL00000000.  This version of
            the project (01) has the accession number NZ_ONQL01000000, and
            consists of sequences ONQL01000001-ONQL01000098.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900319985.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:07:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,140
            CDSs (total)                      :: 2,112
            Genes (coding)                    :: 2,062
            CDSs (with protein)               :: 2,062
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 25
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 28 of 50
            Pseudo Genes (incomplete)         :: 22 of 50
            Pseudo Genes (internal stop)      :: 2 of 50
            Pseudo Genes (multiple problems)  :: 1 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220636
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG545"
                     /db_xref="taxon:253161"
                     /environmental_sample
WGS         ONQL01000001-ONQL01000098
WGS_SCAFLD  NZ_ONQL01000001-NZ_ONQL01000098
//
LOCUS       NZ_QJSM01000000      1790060 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermoplasma sp. Kam2015, whole genome shotgun sequencing project.
ACCESSION   NZ_QJSM00000000
VERSION     NZ_QJSM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09280936
            Assembly: GCF_003205235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermoplasma sp. Kam2015
  ORGANISM  Thermoplasma sp. Kam2015
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Thermoplasmataceae; Thermoplasma.
REFERENCE   1  (bases 1 to 1790060)
  AUTHORS   Perevalova,A., Chernyh,N.A., Korzhenkov,A., Toshchakov,S.V.,
            Novikov,A., Kublanov,I.V. and Bonch-Osmolovskaya,E.A.
  TITLE     Thermoplasma kamchatkensis sp. nov., a novel thermophilic
            acidophilic archaeon isolated from Kamchatka hot spring
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1790060)
  AUTHORS   Perevalova,A., Chernyh,N.A., Korzhenkov,A., Toshchakov,S.V.,
            Novikov,A., Kublanov,I.V. and Bonch-Osmolovskaya,E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2018) Microorganism Genomic Lab, IKBFU,
            Universitetskaia, 2, Kaliningrad 236040, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QJSM00000000.1.
            The Thermoplasma sp. Kam2015 whole genome shotgun (WGS) project has
            the project accession NZ_QJSM00000000.  This version of the project
            (01) has the accession number NZ_QJSM01000000, and consists of
            sequences QJSM01000001-QJSM01000063.
            Bacteria and source DNA available from Research Center of
            Biotechnology Russian Academy of Sciences.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 148.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003205235.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 00:39:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,869
            CDSs (total)                      :: 1,818
            Genes (coding)                    :: 1,792
            CDSs (with protein)               :: 1,792
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 4 of 26
            Pseudo Genes (incomplete)         :: 19 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790060
                     /organism="Thermoplasma sp. Kam2015"
                     /mol_type="genomic DNA"
                     /strain="Kam2015"
                     /isolation_source="Mud from Oil Field, Central Thermal
                     Field"
                     /db_xref="taxon:2094122"
                     /geo_loc_name="Russia: Uzon Caldera, Kamchatka"
                     /lat_lon="54.500383 N 160.001467 E"
                     /altitude="654 m"
                     /collection_date="2009-08"
                     /collected_by="Anna Perevalova, Research Center of
                     Biotechnology Russian Academy of Sciences"
WGS         QJSM01000001-QJSM01000063
WGS_SCAFLD  NZ_QJSM01000001-NZ_QJSM01000063
//
LOCUS       NZ_SPQG01000000      3462656 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorhabdus amylolytica strain H27, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SPQG00000000
VERSION     NZ_SPQG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11242248
            Assembly: GCF_004944975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorhabdus amylolytica
  ORGANISM  Halorhabdus amylolytica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorhabdus.
REFERENCE   1  (bases 1 to 3462656)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a subterranean salt
            mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3462656)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2019) Department of Biology, Anhui University,
            No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SPQG00000000.1.
            The Halorhabdus amylolytica whole genome shotgun (WGS) project has
            the project accession NZ_SPQG00000000.  This version of the project
            (01) has the accession number NZ_SPQG01000000, and consists of
            sequences SPQG01000001-SPQG01000026.
            Bacteria and source DNA available from Salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004944975.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:53:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,474
            CDSs (total)                      :: 3,423
            Genes (coding)                    :: 3,330
            CDSs (with protein)               :: 3,330
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 36 of 93
            Pseudo Genes (incomplete)         :: 71 of 93
            Pseudo Genes (internal stop)      :: 22 of 93
            Pseudo Genes (multiple problems)  :: 29 of 93
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3462656
                     /organism="Halorhabdus amylolytica"
                     /mol_type="genomic DNA"
                     /strain="H27"
                     /isolation_source="Salt mine"
                     /type_material="type strain of Halorhabdus amylolytica"
                     /db_xref="taxon:2559573"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="26.49 N 99.27 E"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
WGS         SPQG01000001-SPQG01000026
WGS_SCAFLD  NZ_SPQG01000001-NZ_SPQG01000026
//
LOCUS       NZ_QKNX01000000      2904418 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronomonas salsuginis strain F20-122, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QKNX00000000
VERSION     NZ_QKNX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09371776
            Assembly: GCF_005239135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronomonas salsuginis
  ORGANISM  Natronomonas salsuginis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2904418)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Natronomonas sp. F20-122 a newhaloarchaeon isolated from a saline
            saltern of Isla Bacuta, Huelva, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2904418)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2019) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QKNX00000000.1.
            The Natronomonas salsuginis whole genome shotgun (WGS) project has
            the project accession NZ_QKNX00000000.  This version of the project
            (01) has the accession number NZ_QKNX01000000, and consists of
            sequences QKNX01000001-QKNX01000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: a5 v. a5 OMOCS_0005
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 352.11x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005239135.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:54:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,046
            CDSs (total)                      :: 2,996
            Genes (coding)                    :: 2,897
            CDSs (with protein)               :: 2,897
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 30 of 99
            Pseudo Genes (incomplete)         :: 72 of 99
            Pseudo Genes (internal stop)      :: 29 of 99
            Pseudo Genes (multiple problems)  :: 26 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2904418
                     /organism="Natronomonas salsuginis"
                     /mol_type="genomic DNA"
                     /strain="F20-122"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Natronomonas salsuginis"
                     /db_xref="taxon:2217661"
                     /geo_loc_name="Spain: Isla Bacuta, Huelva"
                     /collection_date="2016-06-29"
WGS         QKNX01000001-QKNX01000012
WGS_SCAFLD  NZ_QKNX01000001-NZ_QKNX01000012
//
LOCUS       NZ_SGTX01000000      3605305 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. CGM4_25_10-8A, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SGTX00000000
VERSION     NZ_SGTX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910416
            Assembly: GCF_005435025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. CGM4_25_10-8A
  ORGANISM  Halorubrum sp. CGM4_25_10-8A
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3605305)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3605305)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGTX00000000.1.
            The Halorubrum sp. CGM4_25_10-8A whole genome shotgun (WGS) project
            has the project accession NZ_SGTX00000000.  This version of the
            project (01) has the accession number NZ_SGTX01000000, and consists
            of sequences SGTX01000001-SGTX01000073.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 109x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435025.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:00:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,667
            CDSs (total)                      :: 3,599
            Genes (coding)                    :: 3,465
            CDSs (with protein)               :: 3,465
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 31 of 134
            Pseudo Genes (incomplete)         :: 106 of 134
            Pseudo Genes (internal stop)      :: 29 of 134
            Pseudo Genes (multiple problems)  :: 29 of 134
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3605305
                     /organism="Halorubrum sp. CGM4_25_10-8A"
                     /mol_type="genomic DNA"
                     /strain="CGM4_25_10-8A"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:2518116"
                     /geo_loc_name="USA: San Francisco"
                     /lat_lon="37.789162 N 122.478101 W"
                     /collection_date="2006-02"
WGS         SGTX01000001-SGTX01000073
WGS_SCAFLD  NZ_SGTX01000001-NZ_SGTX01000073
//
LOCUS       NZ_SOSC01000000      3661127 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorientalis salina strain NEN8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SOSC00000000
VERSION     NZ_SOSC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11155637
            Assembly: GCF_005049285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis salina
  ORGANISM  Halorientalis salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1  (bases 1 to 3661127)
  AUTHORS   Cui,H. and Tao,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SOSC00000000.1.
            The Halorientalis salina whole genome shotgun (WGS) project has the
            project accession NZ_SOSC00000000.  This version of the project
            (01) has the accession number NZ_SOSC01000000, and consists of
            sequences SOSC01000001-SOSC01000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. DECEMBER-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005049285.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 04:59:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,760
            CDSs (total)                      :: 3,704
            Genes (coding)                    :: 3,646
            CDSs (with protein)               :: 3,646
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 12 of 58
            Pseudo Genes (incomplete)         :: 46 of 58
            Pseudo Genes (internal stop)      :: 6 of 58
            Pseudo Genes (multiple problems)  :: 5 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661127
                     /organism="Halorientalis salina"
                     /mol_type="genomic DNA"
                     /strain="NEN8"
                     /isolation_source="Salt Lake"
                     /type_material="type strain of Halorientalis salina"
                     /db_xref="taxon:2932266"
                     /geo_loc_name="China: Tibet"
                     /collection_date="2013-06"
WGS         SOSC01000001-SOSC01000023
WGS_SCAFLD  NZ_SOSC01000001-NZ_SOSC01000023
//
LOCUS       NZ_SGTZ01000000      3325689 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. ARQ200, whole genome shotgun sequencing project.
ACCESSION   NZ_SGTZ00000000
VERSION     NZ_SGTZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910414
            Assembly: GCF_005435115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. ARQ200
  ORGANISM  Halorubrum sp. ARQ200
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3325689)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3325689)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGTZ00000000.1.
            The Halorubrum sp. ARQ200 whole genome shotgun (WGS) project has
            the project accession NZ_SGTZ00000000.  This version of the project
            (01) has the accession number NZ_SGTZ01000000, and consists of
            sequences SGTZ01000001-SGTZ01000073.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 122x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435115.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:04:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,423
            CDSs (total)                      :: 3,369
            Genes (coding)                    :: 3,293
            CDSs (with protein)               :: 3,293
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 25 of 76
            Pseudo Genes (incomplete)         :: 54 of 76
            Pseudo Genes (internal stop)      :: 15 of 76
            Pseudo Genes (multiple problems)  :: 14 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3325689
                     /organism="Halorubrum sp. ARQ200"
                     /mol_type="genomic DNA"
                     /strain="ARQ200"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:1855872"
                     /geo_loc_name="Spain: Huelva"
                     /lat_lon="37.271106 N 6.957887 W"
                     /collection_date="2012"
WGS         SGTZ01000001-SGTZ01000073
WGS_SCAFLD  NZ_SGTZ01000001-NZ_SGTZ01000073
//
LOCUS       NZ_BIXZ01000000      4217270 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula mannanilytica strain MD-130, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BIXZ00000000
VERSION     NZ_BIXZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00159535
            Assembly: GCF_005406125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula mannanilytica
  ORGANISM  Haloarcula mannanilytica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Enomoto,S., Shimane,Y., Kamekura,M., Ito,T., Moriya,O., Ihara,K.,
            Takahashi-Ando,N., Fukushima,Y., Yoshida,Y., Usama,R., Takai,K. and
            Minegishi,H.
  TITLE     Haloarcula mannanilyticum sp. nov., a mannan degrading haloarchaeon
            isolated from commercial salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4217270)
  AUTHORS   Ihara,K. and Minegishi,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-FEB-2019) Contact:Kunio Ihara Nagoya University,
            Center for Gene Research; Furo-cho 1, Chigusa-ku, Nagoya, Aichi
            4648602, Japan URL :https://www.gene.nagoya-u.ac.jp
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BIXZ00000000.1.
            The Haloarcula mannanilytica whole genome shotgun (WGS) project has
            the project accession NZ_BIXZ00000000.  This version of the project
            (01) has the accession number NZ_BIXZ01000000, and consists of
            sequences BIXZ01000001-BIXZ01000033.
            Annotated at DFAST https://dfast.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPades v. 3.13.0
            Genome Coverage       :: 300x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005406125.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:02:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,300
            CDSs (total)                      :: 4,245
            Genes (coding)                    :: 4,142
            CDSs (with protein)               :: 4,142
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 43 of 103
            Pseudo Genes (incomplete)         :: 73 of 103
            Pseudo Genes (internal stop)      :: 25 of 103
            Pseudo Genes (multiple problems)  :: 30 of 103
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4217270
                     /organism="Haloarcula mannanilytica"
                     /mol_type="genomic DNA"
                     /strain="MD-130"
                     /db_xref="taxon:2509225"
WGS         BIXZ01000001-BIXZ01000033
WGS_SCAFLD  NZ_BIXZ01000001-NZ_BIXZ01000033
//
LOCUS       NZ_SGUD01000000      3479272 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. GN11GM_10-3_MGM, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SGUD00000000
VERSION     NZ_SGUD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910409
            Assembly: GCF_005435175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. GN11GM_10-3_MGM
  ORGANISM  Halorubrum sp. GN11GM_10-3_MGM
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3479272)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3479272)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGUD00000000.1.
            The Halorubrum sp. GN11GM_10-3_MGM whole genome shotgun (WGS)
            project has the project accession NZ_SGUD00000000.  This version of
            the project (01) has the accession number NZ_SGUD01000000, and
            consists of sequences SGUD01000001-SGUD01000113.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435175.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:06:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,581
            CDSs (total)                      :: 3,529
            Genes (coding)                    :: 3,369
            CDSs (with protein)               :: 3,369
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 46 of 160
            Pseudo Genes (incomplete)         :: 113 of 160
            Pseudo Genes (internal stop)      :: 35 of 160
            Pseudo Genes (multiple problems)  :: 31 of 160
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3479272
                     /organism="Halorubrum sp. GN11GM_10-3_MGM"
                     /mol_type="genomic DNA"
                     /strain="GN11GM_10-3_MGM"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:2518111"
                     /geo_loc_name="Mexico: Baja"
                     /lat_lon="27.886495 N 113.483909 W"
                     /collection_date="2006-02"
WGS         SGUD01000001-SGUD01000113
WGS_SCAFLD  NZ_SGUD01000001-NZ_SGUD01000113
//
LOCUS       NZ_SZNP01000000      5154598 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus salinisoli strain LT46, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SZNP00000000
VERSION     NZ_SZNP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11155650
            Assembly: GCF_005239435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus salinisoli
  ORGANISM  Halorussus salinisoli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 5154598)
  AUTHORS   Cui,H. and Tao,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SZNP00000000.1.
            The Halorussus salinisoli whole genome shotgun (WGS) project has
            the project accession NZ_SZNP00000000.  This version of the project
            (01) has the accession number NZ_SZNP01000000, and consists of
            sequences SZNP01000001-SZNP01000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. OCTOBER-2013
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005239435.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:02:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,060
            CDSs (total)                      :: 5,003
            Genes (coding)                    :: 4,886
            CDSs (with protein)               :: 4,886
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 3 (5S, 16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 39 of 117
            Pseudo Genes (incomplete)         :: 89 of 117
            Pseudo Genes (internal stop)      :: 20 of 117
            Pseudo Genes (multiple problems)  :: 29 of 117
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5154598
                     /organism="Halorussus salinisoli"
                     /mol_type="genomic DNA"
                     /strain="LT46"
                     /isolation_source="basin"
                     /type_material="type strain of Halorussus salinisoli"
                     /db_xref="taxon:2558242"
                     /geo_loc_name="China: Xinjiang"
                     /collection_date="2013-10"
WGS         SZNP01000001-SZNP01000018
WGS_SCAFLD  NZ_ML241305
WGS_SCAFLD  NZ_SZNP01000001
WGS_SCAFLD  NZ_SZNP01000004-NZ_SZNP01000018
//
LOCUS       NZ_SGXX01000000      3378175 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. ASP121, whole genome shotgun sequencing project.
ACCESSION   NZ_SGXX00000000
VERSION     NZ_SGXX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910413
            Assembly: GCF_005435225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. ASP121
  ORGANISM  Halorubrum sp. ASP121
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3378175)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3378175)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGXX00000000.1.
            The Halorubrum sp. ASP121 whole genome shotgun (WGS) project has
            the project accession NZ_SGXX00000000.  This version of the project
            (01) has the accession number NZ_SGXX01000000, and consists of
            sequences SGXX01000001-SGXX01000147.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 113x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435225.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:06:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,534
            CDSs (total)                      :: 3,480
            Genes (coding)                    :: 3,372
            CDSs (with protein)               :: 3,372
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 25 of 108
            Pseudo Genes (incomplete)         :: 85 of 108
            Pseudo Genes (internal stop)      :: 8 of 108
            Pseudo Genes (multiple problems)  :: 8 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3378175
                     /organism="Halorubrum sp. ASP121"
                     /mol_type="genomic DNA"
                     /strain="ASP121"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:1855858"
                     /geo_loc_name="Spain: Huelva"
                     /lat_lon="37.271106 N 6.957887 W"
                     /collection_date="2012"
WGS         SGXX01000001-SGXX01000147
WGS_SCAFLD  NZ_SGXX01000001-NZ_SGXX01000147
//
LOCUS       NZ_SZNO01000000      4742812 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronorubrum halophilum strain NEN6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SZNO00000000
VERSION     NZ_SZNO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11155595
            Assembly: GCF_005239425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum halophilum
  ORGANISM  Natronorubrum halophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4742812)
  AUTHORS   Tao,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SZNO00000000.1.
            The Natronorubrum halophilum whole genome shotgun (WGS) project has
            the project accession NZ_SZNO00000000.  This version of the project
            (01) has the accession number NZ_SZNO01000000, and consists of
            sequences SZNO01000001-SZNO01000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. DECEMBER-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005239425.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:17:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,614
            CDSs (total)                      :: 4,556
            Genes (coding)                    :: 4,486
            CDSs (with protein)               :: 4,486
            Genes (RNA)                       :: 58
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 28 of 70
            Pseudo Genes (incomplete)         :: 57 of 70
            Pseudo Genes (internal stop)      :: 16 of 70
            Pseudo Genes (multiple problems)  :: 25 of 70
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4742812
                     /organism="Natronorubrum halophilum"
                     /mol_type="genomic DNA"
                     /strain="NEN6"
                     /isolation_source="Tibet"
                     /db_xref="taxon:1702106"
                     /geo_loc_name="China: Tibet"
                     /collection_date="2013-06"
WGS         SZNO01000001-SZNO01000010
WGS_SCAFLD  NZ_ML241306
WGS_SCAFLD  NZ_SZNO01000001-NZ_SZNO01000004
WGS_SCAFLD  NZ_SZNO01000007-NZ_SZNO01000010
//
LOCUS       NZ_SGTU01000000      3402804 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. SP3, whole genome shotgun sequencing project.
ACCESSION   NZ_SGTU00000000
VERSION     NZ_SGTU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910419
            Assembly: GCF_005435195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SP3
  ORGANISM  Halorubrum sp. SP3
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3402804)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3402804)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGTU00000000.1.
            The Halorubrum sp. SP3 whole genome shotgun (WGS) project has the
            project accession NZ_SGTU00000000.  This version of the project
            (01) has the accession number NZ_SGTU01000000, and consists of
            sequences SGTU01000001-SGTU01000869.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4635x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435195.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:08:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,894
            CDSs (total)                      :: 3,836
            Genes (coding)                    :: 3,497
            CDSs (with protein)               :: 3,497
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 5 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 10 of 339
            Pseudo Genes (incomplete)         :: 331 of 339
            Pseudo Genes (internal stop)      :: 4 of 339
            Pseudo Genes (multiple problems)  :: 6 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3402804
                     /organism="Halorubrum sp. SP3"
                     /mol_type="genomic DNA"
                     /strain="SP3"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:1537265"
                     /geo_loc_name="Israel"
                     /lat_lon="31.230390 N 35.378029 E"
                     /collection_date="2008-11"
WGS         SGTU01000001-SGTU01000869
WGS_SCAFLD  NZ_SGTU01000001-NZ_SGTU01000869
//
LOCUS       NZ_VIAQ01000000      2920174 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanolobus vulcani strain B1d, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VIAQ00000000
VERSION     NZ_VIAQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12136587
            Assembly: GCF_006546655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolobus vulcani
  ORGANISM  Methanolobus vulcani
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 2920174)
  AUTHORS   Creighbaum,A.J., Ticak,T., Hariraju,D., Arivett,B.A. and
            Ferguson,D.J. Jr.
  TITLE     Draft genome sequence of Methanolobus vulcani B1d
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2920174)
  AUTHORS   Creighbaum,A.J., Ticak,T., Hariraju,D., Arivett,B.A. and
            Ferguson,D.J. Jr.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2019) Microbiology, Miami University, 700 E High
            St, Oxford, OH 45056, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VIAQ00000000.1.
            The Methanolobus vulcani whole genome shotgun (WGS) project has the
            project accession NZ_VIAQ00000000.  This version of the project
            (01) has the accession number NZ_VIAQ01000000, and consists of
            sequences VIAQ01000001-VIAQ01000020.
            Bacteria and source DNA available from Biological Resource Center,
            National Institute of Technology and Evaluation: NRBC 110459.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2014
            Assembly Method        :: CLC NGS Cell v. 7.0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 173.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006546655.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:18:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,829
            CDSs (total)                      :: 2,774
            Genes (coding)                    :: 2,755
            CDSs (with protein)               :: 2,755
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 5 of 19
            Pseudo Genes (incomplete)         :: 9 of 19
            Pseudo Genes (internal stop)      :: 8 of 19
            Pseudo Genes (multiple problems)  :: 2 of 19
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2920174
                     /organism="Methanolobus vulcani"
                     /mol_type="genomic DNA"
                     /strain="B1d"
                     /isolation_source="sediment"
                     /db_xref="taxon:38026"
                     /geo_loc_name="USA: southwest branch Back River, Virginia"
                     /collection_date="2014-05"
WGS         VIAQ01000001-VIAQ01000020
WGS_SCAFLD  NZ_VIAQ01000001-NZ_VIAQ01000020
//
LOCUS       NZ_SGTY01000000      3520643 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. CGM5_25_10-8B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SGTY00000000
VERSION     NZ_SGTY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910415
            Assembly: GCF_005435095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. CGM5_25_10-8B
  ORGANISM  Halorubrum sp. CGM5_25_10-8B
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3520643)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3520643)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGTY00000000.1.
            The Halorubrum sp. CGM5_25_10-8B whole genome shotgun (WGS) project
            has the project accession NZ_SGTY00000000.  This version of the
            project (01) has the accession number NZ_SGTY01000000, and consists
            of sequences SGTY01000001-SGTY01000051.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 103x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435095.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:10:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,539
            CDSs (total)                      :: 3,482
            Genes (coding)                    :: 3,396
            CDSs (with protein)               :: 3,396
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 22 of 86
            Pseudo Genes (incomplete)         :: 64 of 86
            Pseudo Genes (internal stop)      :: 19 of 86
            Pseudo Genes (multiple problems)  :: 15 of 86
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520643
                     /organism="Halorubrum sp. CGM5_25_10-8B"
                     /mol_type="genomic DNA"
                     /strain="CGM5_25_10-8B"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:2518115"
                     /geo_loc_name="USA: San Francisco"
                     /lat_lon="37.789162 N 122.478101 W"
                     /collection_date="2006-02"
WGS         SGTY01000001-SGTY01000051
WGS_SCAFLD  NZ_SGTY01000001-NZ_SGTY01000051
//
LOCUS       NZ_SGTV01000000      3734375 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. SD690R, whole genome shotgun sequencing project.
ACCESSION   NZ_SGTV00000000
VERSION     NZ_SGTV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910418
            Assembly: GCF_005435035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SD690R
  ORGANISM  Halorubrum sp. SD690R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3734375)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734375)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGTV00000000.1.
            The Halorubrum sp. SD690R whole genome shotgun (WGS) project has
            the project accession NZ_SGTV00000000.  This version of the project
            (01) has the accession number NZ_SGTV01000000, and consists of
            sequences SGTV01000001-SGTV01000178.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 131x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435035.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:08:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,818
            CDSs (total)                      :: 3,749
            Genes (coding)                    :: 3,568
            CDSs (with protein)               :: 3,568
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 181
            CDSs (without protein)            :: 181
            Pseudo Genes (ambiguous residues) :: 0 of 181
            Pseudo Genes (frameshifted)       :: 33 of 181
            Pseudo Genes (incomplete)         :: 158 of 181
            Pseudo Genes (internal stop)      :: 29 of 181
            Pseudo Genes (multiple problems)  :: 33 of 181
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734375
                     /organism="Halorubrum sp. SD690R"
                     /mol_type="genomic DNA"
                     /strain="SD690R"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:2518117"
                     /geo_loc_name="Namibia"
                     /lat_lon="19.523528 S 15.938973 E"
                     /collection_date="2012"
WGS         SGTV01000001-SGTV01000178
WGS_SCAFLD  NZ_SGTV01000001-NZ_SGTV01000178
//
LOCUS       NZ_SGUB01000000      3612853 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. GN12_10-3_MGM, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SGUB00000000
VERSION     NZ_SGUB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910411
            Assembly: GCF_005435235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. GN12_10-3_MGM
  ORGANISM  Halorubrum sp. GN12_10-3_MGM
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3612853)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3612853)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGUB00000000.1.
            The Halorubrum sp. GN12_10-3_MGM whole genome shotgun (WGS) project
            has the project accession NZ_SGUB00000000.  This version of the
            project (01) has the accession number NZ_SGUB01000000, and consists
            of sequences SGUB01000001-SGUB01000086.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 101x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435235.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:07:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,706
            CDSs (total)                      :: 3,639
            Genes (coding)                    :: 3,503
            CDSs (with protein)               :: 3,503
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 27 of 136
            Pseudo Genes (incomplete)         :: 118 of 136
            Pseudo Genes (internal stop)      :: 18 of 136
            Pseudo Genes (multiple problems)  :: 24 of 136
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3612853
                     /organism="Halorubrum sp. GN12_10-3_MGM"
                     /mol_type="genomic DNA"
                     /strain="GN12_10-3_MGM"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:2518113"
                     /geo_loc_name="Mexico: Baja"
                     /lat_lon="27.886495 N 113.483909 W"
                     /collection_date="2006-02"
WGS         SGUB01000001-SGUB01000086
WGS_SCAFLD  NZ_SGUB01000001-NZ_SGUB01000086
//
LOCUS       NZ_SGXU01000000      3648916 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. SP9, whole genome shotgun sequencing project.
ACCESSION   NZ_SGXU00000000
VERSION     NZ_SGXU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910422
            Assembly: GCF_005435015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SP9
  ORGANISM  Halorubrum sp. SP9
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3648916)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3648916)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGXU00000000.1.
            The Halorubrum sp. SP9 whole genome shotgun (WGS) project has the
            project accession NZ_SGXU00000000.  This version of the project
            (01) has the accession number NZ_SGXU01000000, and consists of
            sequences SGXU01000001-SGXU01000849.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2035x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435015.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:05:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,106
            CDSs (total)                      :: 4,048
            Genes (coding)                    :: 3,674
            CDSs (with protein)               :: 3,674
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 374
            CDSs (without protein)            :: 374
            Pseudo Genes (ambiguous residues) :: 0 of 374
            Pseudo Genes (frameshifted)       :: 18 of 374
            Pseudo Genes (incomplete)         :: 353 of 374
            Pseudo Genes (internal stop)      :: 13 of 374
            Pseudo Genes (multiple problems)  :: 9 of 374
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3648916
                     /organism="Halorubrum sp. SP9"
                     /mol_type="genomic DNA"
                     /strain="SP9"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:1537267"
                     /geo_loc_name="Israel"
                     /lat_lon="31.230390 N 35.378029 E"
                     /collection_date="2008-11"
WGS         SGXU01000001-SGXU01000849
WGS_SCAFLD  NZ_SGXU01000001-NZ_SGXU01000849
//
LOCUS       NZ_SGUC01000000      3321212 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. GN11_10-6_MGM, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SGUC00000000
VERSION     NZ_SGUC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910410
            Assembly: GCF_005435165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. GN11_10-6_MGM
  ORGANISM  Halorubrum sp. GN11_10-6_MGM
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3321212)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3321212)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGUC00000000.1.
            The Halorubrum sp. GN11_10-6_MGM whole genome shotgun (WGS) project
            has the project accession NZ_SGUC00000000.  This version of the
            project (01) has the accession number NZ_SGUC01000000, and consists
            of sequences SGUC01000001-SGUC01000200.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 110x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435165.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:13:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,356
            CDSs (total)                      :: 3,293
            Genes (coding)                    :: 3,184
            CDSs (with protein)               :: 3,184
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 30 of 109
            Pseudo Genes (incomplete)         :: 81 of 109
            Pseudo Genes (internal stop)      :: 11 of 109
            Pseudo Genes (multiple problems)  :: 12 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3321212
                     /organism="Halorubrum sp. GN11_10-6_MGM"
                     /mol_type="genomic DNA"
                     /strain="GN11_10-6_MGM"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:2518112"
                     /geo_loc_name="Mexico: Baja"
                     /lat_lon="27.886495 N 113.483909 W"
                     /collection_date="2006-02"
WGS         SGUC01000001-SGUC01000200
WGS_SCAFLD  NZ_SGUC01000001-NZ_SGUC01000200
//
LOCUS       NZ_RBZW01000000      4520784 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Salinadaptatus halalkaliphilus strain XQ-INN 246, whole genome
            shotgun sequencing project.
ACCESSION   NZ_RBZW00000000
VERSION     NZ_RBZW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10181221
            Assembly: GCF_006543045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinadaptatus halalkaliphilus
  ORGANISM  Salinadaptatus halalkaliphilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Salinadaptatus.
REFERENCE   1  (bases 1 to 4520784)
  AUTHORS   Xue,Q.
  TITLE     Natronolimnobius sp. XQ-INN 246 isolated from Inner Mongolia
            Autonomous Region of China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4520784)
  AUTHORS   Xue,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-2018) The Institute of Microbiology, Chinese
            Academy of Science, Beichen Xilu, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RBZW00000000.1.
            The Salinadaptatus halalkaliphilus whole genome shotgun (WGS)
            project has the project accession NZ_RBZW00000000.  This version of
            the project (01) has the accession number NZ_RBZW01000000, and
            consists of sequences RBZW01000001-RBZW01000077.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 314x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006543045.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:26:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,485
            CDSs (total)                      :: 4,420
            Genes (coding)                    :: 4,275
            CDSs (with protein)               :: 4,275
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 46 of 145
            Pseudo Genes (incomplete)         :: 112 of 145
            Pseudo Genes (internal stop)      :: 23 of 145
            Pseudo Genes (multiple problems)  :: 30 of 145
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4520784
                     /organism="Salinadaptatus halalkaliphilus"
                     /mol_type="genomic DNA"
                     /strain="XQ-INN 246"
                     /isolation_source="salt pond with salinity of 32%, pH 7"
                     /type_material="type material of Salinadaptatus
                     halalkaliphilus"
                     /db_xref="taxon:2419781"
                     /geo_loc_name="China:Inner Mongolia"
                     /collection_date="2016-09-27"
WGS         RBZW01000001-RBZW01000077
WGS_SCAFLD  NZ_RBZW01000001-NZ_RBZW01000077
//
LOCUS       NZ_SGXV01000000      3628710 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. SS7, whole genome shotgun sequencing project.
ACCESSION   NZ_SGXV00000000
VERSION     NZ_SGXV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910421
            Assembly: GCF_005435055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SS7
  ORGANISM  Halorubrum sp. SS7
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3628710)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3628710)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGXV00000000.1.
            The Halorubrum sp. SS7 whole genome shotgun (WGS) project has the
            project accession NZ_SGXV00000000.  This version of the project
            (01) has the accession number NZ_SGXV01000000, and consists of
            sequences SGXV01000001-SGXV01000862.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4652x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435055.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:16:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,156
            CDSs (total)                      :: 4,099
            Genes (coding)                    :: 3,719
            CDSs (with protein)               :: 3,719
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 380
            CDSs (without protein)            :: 380
            Pseudo Genes (ambiguous residues) :: 0 of 380
            Pseudo Genes (frameshifted)       :: 17 of 380
            Pseudo Genes (incomplete)         :: 364 of 380
            Pseudo Genes (internal stop)      :: 8 of 380
            Pseudo Genes (multiple problems)  :: 9 of 380
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3628710
                     /organism="Halorubrum sp. SS7"
                     /mol_type="genomic DNA"
                     /strain="SS7"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:2518119"
                     /geo_loc_name="Thailand"
                     /lat_lon="13.595689 N 100.235212 E"
                     /collection_date="2009"
WGS         SGXV01000001-SGXV01000862
WGS_SCAFLD  NZ_SGXV01000001-NZ_SGXV01000862
//
LOCUS       NZ_SGTW01000000      5822419 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. SD626R, whole genome shotgun sequencing project.
ACCESSION   NZ_SGTW00000000
VERSION     NZ_SGTW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910417
            Assembly: GCF_005435185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SD626R
  ORGANISM  Halorubrum sp. SD626R
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 5822419)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5822419)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGTW00000000.1.
            The Halorubrum sp. SD626R whole genome shotgun (WGS) project has
            the project accession NZ_SGTW00000000.  This version of the project
            (01) has the accession number NZ_SGTW01000000, and consists of
            sequences SGTW01000001-SGTW01001411.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 138x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435185.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:18:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,805
            CDSs (total)                      :: 6,701
            Genes (coding)                    :: 6,006
            CDSs (with protein)               :: 6,006
            Genes (RNA)                       :: 104
            rRNAs                             :: 2, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 5, 3 (16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 695
            CDSs (without protein)            :: 695
            Pseudo Genes (ambiguous residues) :: 0 of 695
            Pseudo Genes (frameshifted)       :: 47 of 695
            Pseudo Genes (incomplete)         :: 648 of 695
            Pseudo Genes (internal stop)      :: 32 of 695
            Pseudo Genes (multiple problems)  :: 28 of 695
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5822419
                     /organism="Halorubrum sp. SD626R"
                     /mol_type="genomic DNA"
                     /strain="SD626R"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:1419722"
                     /geo_loc_name="Namibia"
                     /lat_lon="19.523528 S 15.938973 E"
                     /collection_date="2012"
WGS         SGTW01000001-SGTW01001411
WGS_SCAFLD  NZ_SGTW01000001-NZ_SGTW01001411
//
LOCUS       NZ_RKLU01000000      2841358 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halonotius terrestris strain F15B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RKLU00000000
VERSION     NZ_RKLU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10397912
            Assembly: GCF_006861665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halonotius terrestris
  ORGANISM  Halonotius terrestris
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halonotius.
REFERENCE   1  (bases 1 to 2841358)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halonotius sp. a new haloarchaeum isolated from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2841358)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2019) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKLU00000000.1.
            The Halonotius terrestris whole genome shotgun (WGS) project has
            the project accession NZ_RKLU00000000.  This version of the project
            (01) has the accession number NZ_RKLU01000000, and consists of
            sequences RKLU01000001-RKLU01000026.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72.65x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006861665.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:21:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,084
            CDSs (total)                      :: 3,026
            Genes (coding)                    :: 2,880
            CDSs (with protein)               :: 2,880
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 74 of 146
            Pseudo Genes (frameshifted)       :: 30 of 146
            Pseudo Genes (incomplete)         :: 51 of 146
            Pseudo Genes (internal stop)      :: 8 of 146
            Pseudo Genes (multiple problems)  :: 15 of 146
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841358
                     /organism="Halonotius terrestris"
                     /mol_type="genomic DNA"
                     /strain="F15B"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halonotius terrestris"
                     /db_xref="taxon:2487750"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2014-09"
WGS         RKLU01000001-RKLU01000026
WGS_SCAFLD  NZ_RKLU01000001-NZ_RKLU01000026
//
LOCUS       NZ_SLCR01000000      3258450 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Natronococcus sp. isolate CSSed162cmB_51, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SLCR00000000
VERSION     NZ_SLCR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10607162
            Assembly: GCF_007125715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronococcus sp. (soda lake metagenome)
  ORGANISM  Natronococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 3258450)
  AUTHORS   Mehrshad,M., Balkema,C., Van Hall,R., Imhoff,K., Ferdelman,T.,
            Ghai,R., Sorokin,D.Y. and Muyzer,G.
  TITLE     Metagenomes and metatranscriptomes shed new light on the
            microbial-mediated sulfur cycle in a Siberian soda lake
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3258450)
  AUTHORS   Vavourakis,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2019) Freshwater and Marine Ecology, Institute
            for Biodiversity and Ecosystem dynamics, Faculty of Science,
            University of Amsterdam, PO Box 94248, Amsterdam 1090 GE,
            Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLCR00000000.1.
            The Natronococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_SLCR00000000.  This version of the project
            (01) has the accession number NZ_SLCR01000000, and consists of
            sequences SLCR01000001-SLCR01000211.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.0.3-6-gc3983f9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 67.7891460203145x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007125715.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:36:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,483
            CDSs (total)                      :: 3,438
            Genes (coding)                    :: 3,322
            CDSs (with protein)               :: 3,322
            Genes (RNA)                       :: 45
            rRNAs                             :: 4 (5S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 12 of 116
            Pseudo Genes (incomplete)         :: 103 of 116
            Pseudo Genes (internal stop)      :: 8 of 116
            Pseudo Genes (multiple problems)  :: 6 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3258450
                     /organism="Natronococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="CSSed162cmB_51"
                     /isolation_source="hypersaline soda lake sediment"
                     /db_xref="taxon:35747"
                     /environmental_sample
                     /geo_loc_name="Russia: Kulunda Steppe"
                     /lat_lon="52.11 N 79.17 E"
                     /collection_date="2016-07"
                     /metagenome_source="soda lake metagenome"
                     /metagenomic
WGS         SLCR01000001-SLCR01000211
WGS_SCAFLD  NZ_SLCR01000001-NZ_SLCR01000211
//
LOCUS       NZ_CABMLR010000000   1926345 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter smithii isolate MGYG-HGUT-02446, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CABMLR000000000
VERSION     NZ_CABMLR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5851951
            Assembly: GCF_902387325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABMLR000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CABMLR000000000.  This version of the
            project (01) has the accession number NZ_CABMLR010000000, and
            consists of sequences CABMLR010000001-CABMLR010000016.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902387325.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:43:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,864
            CDSs (total)                      :: 1,818
            Genes (coding)                    :: 1,782
            CDSs (with protein)               :: 1,782
            Genes (RNA)                       :: 46
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 1 of 36
            Pseudo Genes (frameshifted)       :: 19 of 36
            Pseudo Genes (incomplete)         :: 19 of 36
            Pseudo Genes (internal stop)      :: 2 of 36
            Pseudo Genes (multiple problems)  :: 5 of 36
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926345
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-02446"
                     /isolation_source="human gut"
                     /db_xref="taxon:2173"
WGS         CABMLR010000001-CABMLR010000016
WGS_SCAFLD  NZ_CABMLR010000001-NZ_CABMLR010000016
//
LOCUS       NZ_QMDX01000000      4003226 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloglomus irregulare strain F16-60, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QMDX00000000
VERSION     NZ_QMDX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09473901
            Assembly: GCF_007421925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloglomus irregulare
  ORGANISM  Haloglomus irregulare
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Haloglomus.
REFERENCE   1  (bases 1 to 4003226)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Haloglomus irregulare gen. nov., sp. nov., a New Halophilic
            Archaeon Isolated from a Marine Saltern
  JOURNAL   Microorganisms 8 (2), 206 (2020)
   PUBMED   32024278
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4003226)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2018) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QMDX00000000.1.
            The Haloglomus irregulare whole genome shotgun (WGS) project has
            the project accession NZ_QMDX00000000.  This version of the project
            (01) has the accession number NZ_QMDX01000000, and consists of
            sequences QMDX01000001-QMDX01000053.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 340.85x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007421925.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:36:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,062
            CDSs (total)                      :: 4,005
            Genes (coding)                    :: 3,850
            CDSs (with protein)               :: 3,850
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 42 of 155
            Pseudo Genes (incomplete)         :: 114 of 155
            Pseudo Genes (internal stop)      :: 22 of 155
            Pseudo Genes (multiple problems)  :: 21 of 155
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003226
                     /organism="Haloglomus irregulare"
                     /mol_type="genomic DNA"
                     /strain="F16-60"
                     /isolation_source="solar saltern of Isla Cristina, Huelva,
                     Spain"
                     /type_material="type strain of Haloglomus irregulare"
                     /db_xref="taxon:2234134"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06-29"
WGS         QMDX01000001-QMDX01000053
WGS_SCAFLD  NZ_QMDX01000001-NZ_QMDX01000053
//
LOCUS       NZ_CABMAB010000000   2083511 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter oralis isolate MGYG-HGUT-02162, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CABMAB000000000
VERSION     NZ_CABMAB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5851666
            Assembly: GCF_902384065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter oralis
  ORGANISM  Methanobrevibacter oralis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABMAB000000000.1.
            The Methanobrevibacter oralis whole genome shotgun (WGS) project
            has the project accession NZ_CABMAB000000000.  This version of the
            project (01) has the accession number NZ_CABMAB010000000, and
            consists of sequences CABMAB010000001-CABMAB010000060.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902384065.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:45:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,190
            CDSs (total)                      :: 2,150
            Genes (coding)                    :: 1,899
            CDSs (with protein)               :: 1,899
            Genes (RNA)                       :: 40
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 251
            CDSs (without protein)            :: 251
            Pseudo Genes (ambiguous residues) :: 0 of 251
            Pseudo Genes (frameshifted)       :: 208 of 251
            Pseudo Genes (incomplete)         :: 47 of 251
            Pseudo Genes (internal stop)      :: 5 of 251
            Pseudo Genes (multiple problems)  :: 7 of 251
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083511
                     /organism="Methanobrevibacter oralis"
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-02162"
                     /isolation_source="human gut"
                     /db_xref="taxon:66851"
WGS         CABMAB010000001-CABMAB010000060
WGS_SCAFLD  NZ_CABMAB010000001-NZ_CABMAB010000060
//
LOCUS       NZ_SESI01000000      2564231 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halonotius roseus strain F9-27, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SESI00000000
VERSION     NZ_SESI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10868424
            Assembly: GCF_006861655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halonotius roseus
  ORGANISM  Halonotius roseus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halonotius.
REFERENCE   1  (bases 1 to 2564231)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halonotius sp. a new haloqrchaeon isolated from saline water
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2564231)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2019) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SESI00000000.1.
            The Halonotius roseus whole genome shotgun (WGS) project has the
            project accession NZ_SESI00000000.  This version of the project
            (01) has the accession number NZ_SESI01000000, and consists of
            sequences SESI01000001-SESI01000004.
            Bacteria and source DNA available from Dr. Antonio Ventosa.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 738.58x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006861655.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:33:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,735
            CDSs (total)                      :: 2,685
            Genes (coding)                    :: 2,663
            CDSs (with protein)               :: 2,663
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 4 of 22
            Pseudo Genes (incomplete)         :: 19 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 2 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564231
                     /organism="Halonotius roseus"
                     /mol_type="genomic DNA"
                     /strain="F9-27"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halonotius roseus"
                     /db_xref="taxon:2511997"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06"
WGS         SESI01000001-SESI01000004
WGS_SCAFLD  NZ_SESI01000001-NZ_SESI01000004
//
LOCUS       NZ_VCNL01000000      3674912 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum salsamenti strain Y69, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VCNL00000000
VERSION     NZ_VCNL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11867824
            Assembly: GCF_007671685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum salsamenti
  ORGANISM  Halorubrum salsamenti
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3674912)
  AUTHORS   Chen,S., He,J., Zhang,J., Xu,Y., Huang,J. and Ke,L.X.
  TITLE     Halorubrum salsamenti sp. nov., a Novel Halophilic Archaeon
            Isolated from a Brine of Salt Mine
  JOURNAL   Curr Microbiol 74 (11), 1358-1364 (2017)
   PUBMED   28819743
REFERENCE   2  (bases 1 to 3674912)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2019) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VCNL00000000.1.
            The Halorubrum salsamenti whole genome shotgun (WGS) project has
            the project accession NZ_VCNL00000000.  This version of the project
            (01) has the accession number NZ_VCNL01000000, and consists of
            sequences VCNL01000001-VCNL01000021.
            Bacteria and source DNA available from Salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007671685.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:41:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,657
            CDSs (total)                      :: 3,603
            Genes (coding)                    :: 3,526
            CDSs (with protein)               :: 3,526
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 31 of 77
            Pseudo Genes (incomplete)         :: 60 of 77
            Pseudo Genes (internal stop)      :: 14 of 77
            Pseudo Genes (multiple problems)  :: 24 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3674912
                     /organism="Halorubrum salsamenti"
                     /mol_type="genomic DNA"
                     /strain="Y69"
                     /isolation_source="brine of salt mine"
                     /type_material="type strain of Halorubrum salsamenti"
                     /db_xref="taxon:2583990"
                     /lab_host="Shaoxing Chen"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="25.28 N 101.90 E"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
WGS         VCNL01000001-VCNL01000021
WGS_SCAFLD  NZ_VCNL01000001-NZ_VCNL01000021
//
LOCUS       NZ_VCNM01000000      3182860 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum depositum strain Y78, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VCNM00000000
VERSION     NZ_VCNM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11869061
            Assembly: GCF_007671725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum depositum
  ORGANISM  Halorubrum depositum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3182860)
  AUTHORS   Chen,S., Sun,S., Xu,Y., Lv,J., Chen,L. and Liu,L.
  TITLE     Halorubrum depositum sp. nov., a Novel Halophilic Archaeon Isolated
            from a Salt Deposit
  JOURNAL   Curr Microbiol 75 (6), 677-683 (2018)
   PUBMED   29322241
REFERENCE   2  (bases 1 to 3182860)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2019) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VCNM00000000.1.
            The Halorubrum depositum whole genome shotgun (WGS) project has the
            project accession NZ_VCNM00000000.  This version of the project
            (01) has the accession number NZ_VCNM01000000, and consists of
            sequences VCNM01000001-VCNM01000005.
            Bacteria and source DNA available from Salt mine.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007671725.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:40:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,227
            CDSs (total)                      :: 3,168
            Genes (coding)                    :: 3,142
            CDSs (with protein)               :: 3,142
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 7 of 26
            Pseudo Genes (incomplete)         :: 15 of 26
            Pseudo Genes (internal stop)      :: 7 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182860
                     /organism="Halorubrum depositum"
                     /mol_type="genomic DNA"
                     /strain="Y78"
                     /isolation_source="salt deposit"
                     /type_material="type strain of Halorubrum depositum"
                     /db_xref="taxon:2583992"
                     /lab_host="Shaoxing Chen"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="26.10 N 99.78 E"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
WGS         VCNM01000001-VCNM01000005
WGS_SCAFLD  NZ_VCNM01000001-NZ_VCNM01000005
//
LOCUS       NZ_SKPV01000000      3855275 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Halovivax sp. isolate CSSed162cmA_395, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SKPV00000000
VERSION     NZ_SKPV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10606132
            Assembly: GCF_007119345.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halovivax sp. (soda lake metagenome)
  ORGANISM  Halovivax sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halovivax.
REFERENCE   1  (bases 1 to 3855275)
  AUTHORS   Mehrshad,M., Balkema,C., Van Hall,R., Imhoff,K., Ferdelman,T.,
            Ghai,R., Sorokin,D. and Muyzer,G.
  TITLE     Metagenomes and metatranscriptomes shed new light on the
            microbial-mediated sulfur cycle in a Siberian soda lake
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3855275)
  AUTHORS   Vavourakis,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2019) Freshwater and Marine Ecology, Institute
            for Biodiversity and Ecosystem dynamics, Faculty of Science,
            University of Amsterdam, PO Box 94248, Amsterdam 1090 GE,
            Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SKPV00000000.1.
            The Halovivax sp. whole genome shotgun (WGS) project has the
            project accession NZ_SKPV00000000.  This version of the project
            (01) has the accession number NZ_SKPV01000000, and consists of
            sequences SKPV01000001-SKPV01000292.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.0.3-6-gc3983f9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45.0315605787637x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007119345.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:36:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,830
            CDSs (total)                      :: 3,791
            Genes (coding)                    :: 3,647
            CDSs (with protein)               :: 3,647
            Genes (RNA)                       :: 39
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 15 of 144
            Pseudo Genes (incomplete)         :: 135 of 144
            Pseudo Genes (internal stop)      :: 4 of 144
            Pseudo Genes (multiple problems)  :: 8 of 144
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3855275
                     /organism="Halovivax sp."
                     /mol_type="genomic DNA"
                     /isolate="CSSed162cmA_395"
                     /isolation_source="hypersaline soda lake sediment"
                     /db_xref="taxon:1935978"
                     /environmental_sample
                     /geo_loc_name="Russia: Kulunda Steppe"
                     /lat_lon="52.11 N 79.17 E"
                     /collection_date="2016-07"
                     /metagenome_source="soda lake metagenome"
                     /metagenomic
WGS         SKPV01000001-SKPV01000292
WGS_SCAFLD  NZ_SKPV01000001-NZ_SKPV01000292
//
LOCUS       NZ_CABMAD010000000   1727775 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter smithii isolate MGYG-HGUT-02163, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CABMAD000000000
VERSION     NZ_CABMAD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5851667
            Assembly: GCF_902384055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABMAD000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CABMAD000000000.  This version of the
            project (01) has the accession number NZ_CABMAD010000000, and
            consists of sequences CABMAD010000001-CABMAD010000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902384055.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:49:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,674
            Genes (coding)                    :: 1,644
            CDSs (with protein)               :: 1,644
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 14 of 30
            Pseudo Genes (incomplete)         :: 15 of 30
            Pseudo Genes (internal stop)      :: 4 of 30
            Pseudo Genes (multiple problems)  :: 2 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727775
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-02163"
                     /isolation_source="human gut"
                     /db_xref="taxon:2173"
WGS         CABMAD010000001-CABMAD010000010
WGS_SCAFLD  NZ_CABMAD010000001-NZ_CABMAD010000010
//
LOCUS       NZ_FXTD01000000      3176020 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum cibi strain DSM 19504, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FXTD00000000
VERSION     NZ_FXTD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06264867
            Assembly: GCF_900182635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum cibi
  ORGANISM  Halorubrum cibi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FXTD00000000.1.
            The Halorubrum cibi whole genome shotgun (WGS) project has the
            project accession NZ_FXTD00000000.  This version of the project
            (01) has the accession number NZ_FXTD01000000, and consists of
            sequences FXTD01000001-FXTD01000035.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900182635.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:38:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,191
            CDSs (total)                      :: 3,138
            Genes (coding)                    :: 3,080
            CDSs (with protein)               :: 3,080
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 12 of 58
            Pseudo Genes (incomplete)         :: 50 of 58
            Pseudo Genes (internal stop)      :: 2 of 58
            Pseudo Genes (multiple problems)  :: 5 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3176020
                     /organism="Halorubrum cibi"
                     /mol_type="genomic DNA"
                     /strain="DSM 19504"
                     /type_material="type strain of Halorubrum cibi"
                     /db_xref="taxon:413815"
                     /geo_loc_name="South Korea"
WGS         FXTD01000001-FXTD01000035
WGS_SCAFLD  NZ_FXTD01000001-NZ_FXTD01000035
//
LOCUS       NZ_SMZK01000000      4263024 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloterrigena sp. H1, whole genome shotgun sequencing project.
ACCESSION   NZ_SMZK00000000
VERSION     NZ_SMZK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11125369
            Assembly: GCF_005938085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloterrigena sp. H1
  ORGANISM  Haloterrigena sp. H1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Haloterrigena.
REFERENCE   1  (bases 1 to 4263024)
  AUTHORS   Ding,J.-Y., Chen,S.-C., Lai,M.-C. and Liao,T.-L.
  TITLE     A novel halophilic archaeon Haloterrigena sp. H1 isolated from
            solar saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4263024)
  AUTHORS   Chen,S.-C., Ding,J.-Y., Lai,M.-C. and Liao,T.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2019) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMZK00000000.1.
            The Haloterrigena sp. H1 whole genome shotgun (WGS) project has the
            project accession NZ_SMZK00000000.  This version of the project
            (01) has the accession number NZ_SMZK01000000, and consists of
            sequences SMZK01000001-SMZK01000009.
            Bacteria and source DNA available from NBRC:111884.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-MAR-2016
            Assembly Method        :: HGAP v. Mar-2016
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 266.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005938085.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:39:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,405
            CDSs (total)                      :: 4,331
            Genes (coding)                    :: 4,133
            CDSs (with protein)               :: 4,133
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 198
            CDSs (without protein)            :: 198
            Pseudo Genes (ambiguous residues) :: 0 of 198
            Pseudo Genes (frameshifted)       :: 108 of 198
            Pseudo Genes (incomplete)         :: 114 of 198
            Pseudo Genes (internal stop)      :: 22 of 198
            Pseudo Genes (multiple problems)  :: 39 of 198
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4263024
                     /organism="Haloterrigena sp. H1"
                     /mol_type="genomic DNA"
                     /strain="H1"
                     /isolation_source="the solar saltern of the Western Salt
                     Co."
                     /culture_collection="NBRC:111884"
                     /db_xref="taxon:2552943"
                     /geo_loc_name="USA: Chula Vista, San Diego County,
                     California"
                     /collection_date="1992"
                     /collected_by="Mei-Chin Lai"
WGS         SMZK01000001-SMZK01000009
WGS_SCAFLD  NZ_SMZK01000001-NZ_SMZK01000009
//
LOCUS       NZ_VMTR01000000      3784342 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax volcanii strain SS0101, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VMTR00000000
VERSION     NZ_VMTR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12359455
            Assembly: GCF_007714225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3784342)
  AUTHORS   Wanthongcharoen,S., Yamprayoonswat,W., Ruangsuj,P., Thongpramul,N.,
            Jumpathong,W., Sittihan,S., Kanjanavas,P. and Yasawong,M.
  TITLE     Draft genome sequence of Haloferax volcanii SS0101, isolated from
            salt farm in Samut Sakhon, Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3784342)
  AUTHORS   Wanthongcharoen,S., Yamprayoonswat,W., Ruangsuj,P., Thongpramul,N.,
            Jumpathong,W., Sittihan,S., Kanjanavas,P. and Yasawong,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2019) Environmental Toxicology, Chulabhorn
            Graduate Institute, 906 Kamphaeng Phet 6, Talat Bang Khen, Lak Si,
            Bangkok 10120, Thailand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VMTR00000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_VMTR00000000.  This version of the project
            (01) has the accession number NZ_VMTR01000000, and consists of
            sequences VMTR01000001-VMTR01000593.
            Bacteria and source DNA available from Dr. Montri Yasawong,
            Chulabhorn Graduate Institute, Thailand.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 25-JUL-2019
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 155.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007714225.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,173
            CDSs (total)                      :: 4,115
            Genes (coding)                    :: 3,692
            CDSs (with protein)               :: 3,692
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 423
            CDSs (without protein)            :: 423
            Pseudo Genes (ambiguous residues) :: 0 of 423
            Pseudo Genes (frameshifted)       :: 134 of 423
            Pseudo Genes (incomplete)         :: 296 of 423
            Pseudo Genes (internal stop)      :: 7 of 423
            Pseudo Genes (multiple problems)  :: 13 of 423
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3784342
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="SS0101"
                     /isolation_source="soil from salt farm"
                     /db_xref="taxon:2246"
                     /geo_loc_name="Thailand: Samut Sakhon"
                     /lat_lon="13.5131 N 100.3747 E"
                     /collection_date="2018-06-23"
WGS         VMTR01000001-VMTR01000593
WGS_SCAFLD  NZ_VMTR01000001-NZ_VMTR01000593
//
LOCUS       NZ_VRYN01000000      2364912 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobacterium salinarum DSM 3754, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VRYN00000000
VERSION     NZ_VRYN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04244564
            Assembly: GCF_008124605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum DSM 3754
  ORGANISM  Halobacterium salinarum DSM 3754
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2364912)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase
            II (KMG-II): from individual species to whole genera
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2364912)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VRYN00000000.1.
            The Halobacterium salinarum DSM 3754 whole genome shotgun (WGS)
            project has the project accession NZ_VRYN00000000.  This version of
            the project (01) has the accession number NZ_VRYN01000000, and
            consists of sequences VRYN01000001-VRYN01000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: AllPaths v. r46652
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 255.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008124605.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:54:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,535
            CDSs (total)                      :: 2,482
            Genes (coding)                    :: 2,416
            CDSs (with protein)               :: 2,416
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 17 of 66
            Pseudo Genes (incomplete)         :: 59 of 66
            Pseudo Genes (internal stop)      :: 8 of 66
            Pseudo Genes (multiple problems)  :: 14 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364912
                     /organism="Halobacterium salinarum DSM 3754"
                     /mol_type="genomic DNA"
                     /strain="DSM 3754"
                     /culture_collection="DSM:3754"
                     /type_material="type strain of Halobacterium salinarum"
                     /db_xref="taxon:2597657"
WGS         VRYN01000001-VRYN01000040
WGS_SCAFLD  NZ_VRYN01000001-NZ_VRYN01000040
//
LOCUS       NZ_VJXQ01000000      3348450 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobellus captivus strain ZY21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VJXQ00000000
VERSION     NZ_VJXQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12091411
            Assembly: GCF_007655485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus captivus
  ORGANISM  Halobellus captivus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3348450)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a subterranean rock
            salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3348450)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2019) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VJXQ00000000.1.
            The Halobellus captivus whole genome shotgun (WGS) project has the
            project accession NZ_VJXQ00000000.  This version of the project
            (01) has the accession number NZ_VJXQ01000000, and consists of
            sequences VJXQ01000001-VJXQ01000021.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007655485.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:48:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,347
            CDSs (total)                      :: 3,295
            Genes (coding)                    :: 3,204
            CDSs (with protein)               :: 3,204
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 30 of 91
            Pseudo Genes (incomplete)         :: 73 of 91
            Pseudo Genes (internal stop)      :: 16 of 91
            Pseudo Genes (multiple problems)  :: 22 of 91
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3348450
                     /organism="Halobellus captivus"
                     /mol_type="genomic DNA"
                     /strain="ZY21"
                     /isolation_source="Salt mine"
                     /type_material="type material of Halobellus captivus"
                     /db_xref="taxon:2592614"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="25.86 N 101.10 E"
                     /collection_date="2013-09-10"
                     /collected_by="Shaoxing Chen"
WGS         VJXQ01000001-VJXQ01000021
WGS_SCAFLD  NZ_VJXQ01000001-NZ_VJXQ01000021
//
LOCUS       NZ_CABLRR010000000   3991456 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax massiliensis isolate MGYG-HGUT-01639, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CABLRR000000000
VERSION     NZ_CABLRR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5851142
            Assembly: GCF_902381785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax massiliensis
  ORGANISM  Haloferax massiliensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABLRR000000000.1.
            The Haloferax massiliensis whole genome shotgun (WGS) project has
            the project accession NZ_CABLRR000000000.  This version of the
            project (01) has the accession number NZ_CABLRR010000000, and
            consists of sequences CABLRR010000001-CABLRR010000008.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902381785.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:51:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,007
            CDSs (total)                      :: 3,947
            Genes (coding)                    :: 3,844
            CDSs (with protein)               :: 3,844
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 50 of 103
            Pseudo Genes (incomplete)         :: 62 of 103
            Pseudo Genes (internal stop)      :: 8 of 103
            Pseudo Genes (multiple problems)  :: 13 of 103
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3991456
                     /organism="Haloferax massiliensis"
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-01639"
                     /isolation_source="human gut"
                     /db_xref="taxon:1476858"
WGS         CABLRR010000001-CABLRR010000008
WGS_SCAFLD  NZ_CABLRR010000001-NZ_CABLRR010000008
//
LOCUS       NZ_CABLBM010000000   3425042 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum lipolyticum isolate MGYG-HGUT-01693, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CABLBM000000000
VERSION     NZ_CABLBM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5851197
            Assembly: GCF_902377425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum lipolyticum
  ORGANISM  Halorubrum lipolyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABLBM000000000.1.
            The Halorubrum lipolyticum whole genome shotgun (WGS) project has
            the project accession NZ_CABLBM000000000.  This version of the
            project (01) has the accession number NZ_CABLBM010000000, and
            consists of sequences CABLBM010000001-CABLBM010000041.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902377425.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 05:55:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,370
            CDSs (total)                      :: 3,316
            Genes (coding)                    :: 3,255
            CDSs (with protein)               :: 3,255
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 22 of 61
            Pseudo Genes (incomplete)         :: 45 of 61
            Pseudo Genes (internal stop)      :: 3 of 61
            Pseudo Genes (multiple problems)  :: 9 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3425042
                     /organism="Halorubrum lipolyticum"
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-01693"
                     /isolation_source="human gut"
                     /db_xref="taxon:368624"
WGS         CABLBM010000001-CABLBM010000041
WGS_SCAFLD  NZ_CABLBM010000001-NZ_CABLBM010000041
//
LOCUS       NZ_VTAW01000000      4201486 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrialba swarupiae strain ESP3B_9, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VTAW00000000
VERSION     NZ_VTAW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12624145
            Assembly: GCF_008245225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba swarupiae
  ORGANISM  Natrialba swarupiae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4201486)
  AUTHORS   Kajale,S., Shouche,Y., Deshpande,N. and Sharma,A.
  TITLE     Archaea genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4201486)
  AUTHORS   Kajale,S., Shouche,Y., Deshpande,N. and Sharma,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2019) NCMR, NCMR- NCCS, Pashan, Pune, Maharashtra
            411021, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VTAW00000000.1.
            The Natrialba swarupiae whole genome shotgun (WGS) project has the
            project accession NZ_VTAW00000000.  This version of the project
            (01) has the accession number NZ_VTAW01000000, and consists of
            sequences VTAW01000001-VTAW01000099.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PATRIC v. 3.5.43
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 175.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008245225.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:02:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,079
            CDSs (total)                      :: 4,028
            Genes (coding)                    :: 3,927
            CDSs (with protein)               :: 3,927
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 29 of 101
            Pseudo Genes (incomplete)         :: 84 of 101
            Pseudo Genes (internal stop)      :: 14 of 101
            Pseudo Genes (multiple problems)  :: 25 of 101
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4201486
                     /organism="Natrialba swarupiae"
                     /mol_type="genomic DNA"
                     /strain="ESP3B_9"
                     /isolation_source="sediment"
                     /type_material="type material of Natrialba swarupiae"
                     /db_xref="taxon:2448032"
                     /geo_loc_name="India"
                     /collection_date="2016"
                     /collected_by="Swapnil Kajale"
WGS         VTAW01000001-VTAW01000099
WGS_SCAFLD  NZ_VTAW01000001-NZ_VTAW01000099
//
LOCUS       NZ_FNBO01000000      3261294 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum xinjiangense strain CGMCC 1.3527, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNBO00000000
VERSION     NZ_FNBO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488067
            Assembly: GCF_900102375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum xinjiangense
  ORGANISM  Halorubrum xinjiangense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNBO00000000.1.
            The Halorubrum xinjiangense whole genome shotgun (WGS) project has
            the project accession NZ_FNBO00000000.  This version of the project
            (01) has the accession number NZ_FNBO01000000, and consists of
            sequences FNBO01000001-FNBO01000025.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900102375.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:03:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,218
            CDSs (total)                      :: 3,157
            Genes (coding)                    :: 3,111
            CDSs (with protein)               :: 3,111
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 9 of 46
            Pseudo Genes (incomplete)         :: 35 of 46
            Pseudo Genes (internal stop)      :: 6 of 46
            Pseudo Genes (multiple problems)  :: 3 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261294
                     /organism="Halorubrum xinjiangense"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.3527"
                     /type_material="type strain of Halorubrum xinjiangense"
                     /db_xref="taxon:261291"
WGS         FNBO01000001-FNBO01000025
WGS_SCAFLD  NZ_FNBO01000001-NZ_FNBO01000025
//
LOCUS       NZ_QMDY01000000      2435049 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halosegnis rubeus strain F19-13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QMDY00000000
VERSION     NZ_QMDY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09473933
            Assembly: GCF_009184555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosegnis rubeus
  ORGANISM  Halosegnis rubeus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1  (bases 1 to 2435049)
  AUTHORS   Duran-Viseras,A., Andrei,A.-S., Vera-Gargallo,B., Ghai,R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Unraveling microbial dark matter from salterns through culturing:
            the case of the genus Halosegnis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2435049)
  AUTHORS   Duran-Viseras,A., Andrei,A.-S., Vera-Gargallo,B., Ghai,R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2019) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QMDY00000000.1.
            The Halosegnis rubeus whole genome shotgun (WGS) project has the
            project accession NZ_QMDY00000000.  This version of the project
            (01) has the accession number NZ_QMDY01000000, and consists of
            sequences QMDY01000001-QMDY01000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 623.48x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009184555.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:40:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,684
            CDSs (total)                      :: 2,634
            Genes (coding)                    :: 2,575
            CDSs (with protein)               :: 2,575
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 15 of 59
            Pseudo Genes (incomplete)         :: 46 of 59
            Pseudo Genes (internal stop)      :: 7 of 59
            Pseudo Genes (multiple problems)  :: 9 of 59
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435049
                     /organism="Halosegnis rubeus"
                     /mol_type="genomic DNA"
                     /strain="F19-13"
                     /isolation_source="solar saltern"
                     /db_xref="taxon:2212850"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06-29"
WGS         QMDY01000001-QMDY01000016
WGS_SCAFLD  NZ_QMDY01000001-NZ_QMDY01000016
//
LOCUS       NZ_FMXB01000000      2716742 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter millerae strain DSM 16643, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FMXB00000000
VERSION     NZ_FMXB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02910315
            Assembly: GCF_900103415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter millerae
  ORGANISM  Methanobrevibacter millerae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FMXB00000000.1.
            The Methanobrevibacter millerae whole genome shotgun (WGS) project
            has the project accession NZ_FMXB00000000.  This version of the
            project (01) has the accession number NZ_FMXB01000000, and consists
            of sequences FMXB01000001-FMXB01000048.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900103415.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:10:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,451
            CDSs (total)                      :: 2,381
            Genes (coding)                    :: 2,358
            CDSs (with protein)               :: 2,358
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 5 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 1 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2716742
                     /organism="Methanobrevibacter millerae"
                     /mol_type="genomic DNA"
                     /strain="DSM 16643"
                     /type_material="type strain of Methanobrevibacter
                     millerae"
                     /db_xref="taxon:230361"
                     /geo_loc_name="Australia:Perth, Australia"
WGS         FMXB01000001-FMXB01000048
WGS_SCAFLD  NZ_FMXB01000001-NZ_FMXB01000048
//
LOCUS       NZ_RPCY01000000      4334589 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. CBA1131, whole genome shotgun sequencing project.
ACCESSION   NZ_RPCY00000000
VERSION     NZ_RPCY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10417080
            Assembly: GCF_008728975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. CBA1131
  ORGANISM  Haloarcula sp. CBA1131
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4334589)
  AUTHORS   Roh,S.W. and Kim,J.
  TITLE     Genomic analysis of Haloarcula sp. CBA1131
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4334589)
  AUTHORS   Roh,S.W. and Kim,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-NOV-2018) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RPCY00000000.1.
            The Haloarcula sp. CBA1131 whole genome shotgun (WGS) project has
            the project accession NZ_RPCY00000000.  This version of the project
            (01) has the accession number NZ_RPCY01000000, and consists of
            sequences RPCY01000001-RPCY01000005.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 268.81x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008728975.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:41:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,415
            CDSs (total)                      :: 4,355
            Genes (coding)                    :: 4,207
            CDSs (with protein)               :: 4,207
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 96 of 148
            Pseudo Genes (incomplete)         :: 59 of 148
            Pseudo Genes (internal stop)      :: 16 of 148
            Pseudo Genes (multiple problems)  :: 22 of 148
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4334589
                     /organism="Haloarcula sp. CBA1131"
                     /mol_type="genomic DNA"
                     /strain="CBA1131"
                     /db_xref="taxon:1853686"
                     /geo_loc_name="South Korea"
WGS         RPCY01000001-RPCY01000005
WGS_SCAFLD  NZ_RPCY01000001-NZ_RPCY01000005
//
LOCUS       NZ_CABPRH010000000   4288598 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. KTX1 isolate KTX11, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CABPRH000000000
VERSION     NZ_CABPRH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5858272
            Sequence Read Archive: ERR3473729
            Assembly: GCF_902410085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. KTX1
  ORGANISM  Haloferax sp. KTX1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1
  AUTHORS   Wilson,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2019) University of York, Biophysical Imaging and
            Spectroscopy Lab, Department of Physics, Heslington Lane,
            Heslington, York, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABPRH000000000.1.
            The Haloferax sp. KTX1 whole genome shotgun (WGS) project has the
            project accession NZ_CABPRH000000000.  This version of the project
            (01) has the accession number NZ_CABPRH010000000, and consists of
            sequences CABPRH010000001-CABPRH010000391.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902410085.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:14:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,403
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,189
            CDSs (with protein)               :: 4,189
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 30 of 148
            Pseudo Genes (incomplete)         :: 123 of 148
            Pseudo Genes (internal stop)      :: 12 of 148
            Pseudo Genes (multiple problems)  :: 14 of 148
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288598
                     /organism="Haloferax sp. KTX1"
                     /mol_type="genomic DNA"
                     /isolate="KTX11"
                     /isolation_source="brine seep. Boulby Mine"
                     /db_xref="taxon:2600597"
WGS         CABPRH010000001-CABPRH010000391
WGS_SCAFLD  NZ_CABPRH010000001-NZ_CABPRH010000391
//
LOCUS       NZ_VZUT01000000      3255273 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum halophilum strain CBA1147, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VZUT00000000
VERSION     NZ_VZUT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12856018
            Assembly: GCF_008806895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum halophilum
  ORGANISM  Halorubrum halophilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3255273)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Halorubrum halophilum CBA1147
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3255273)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju
            61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VZUT00000000.1.
            The Halorubrum halophilum whole genome shotgun (WGS) project has
            the project accession NZ_VZUT00000000.  This version of the project
            (01) has the accession number NZ_VZUT01000000, and consists of
            sequences VZUT01000001-VZUT01000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 185.93x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008806895.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:42:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,291
            CDSs (total)                      :: 3,235
            Genes (coding)                    :: 3,173
            CDSs (with protein)               :: 3,173
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 28 of 62
            Pseudo Genes (incomplete)         :: 46 of 62
            Pseudo Genes (internal stop)      :: 15 of 62
            Pseudo Genes (multiple problems)  :: 21 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3255273
                     /organism="Halorubrum halophilum"
                     /mol_type="genomic DNA"
                     /strain="CBA1147"
                     /isolation_source="salted shrimp"
                     /db_xref="taxon:413816"
                     /geo_loc_name="South Korea"
WGS         VZUT01000001-VZUT01000005
WGS_SCAFLD  NZ_VZUT01000001-NZ_VZUT01000005
//
LOCUS       NZ_FNFT01000000      2217720 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanoculleus thermophilus strain DSM 2373, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FNFT00000000
VERSION     NZ_FNFT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488571
            Assembly: GCF_900101055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus thermophilus
  ORGANISM  Methanoculleus thermophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FNFT00000000.1.
            The Methanoculleus thermophilus whole genome shotgun (WGS) project
            has the project accession NZ_FNFT00000000.  This version of the
            project (01) has the accession number NZ_FNFT01000000, and consists
            of sequences FNFT01000001-FNFT01000021.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900101055.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:32:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,311
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,224
            CDSs (with protein)               :: 2,224
            Genes (RNA)                       :: 68
            rRNAs                             :: 5, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 2 of 19
            Pseudo Genes (incomplete)         :: 18 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217720
                     /organism="Methanoculleus thermophilus"
                     /mol_type="genomic DNA"
                     /strain="DSM 2373"
                     /type_material="type strain of Methanoculleus
                     thermophilus"
                     /db_xref="taxon:2200"
WGS         FNFT01000001-FNFT01000021
WGS_SCAFLD  NZ_FNFT01000001-NZ_FNFT01000021
//
LOCUS       NZ_VZUR01000000      3561692 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. CBA1148, whole genome shotgun sequencing project.
ACCESSION   NZ_VZUR00000000
VERSION     NZ_VZUR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12855944
            Assembly: GCF_008806815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. CBA1148
  ORGANISM  Haloferax sp. CBA1148
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3561692)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Haloferax sp. CBA1148
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3561692)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju
            61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VZUR00000000.1.
            The Haloferax sp. CBA1148 whole genome shotgun (WGS) project has
            the project accession NZ_VZUR00000000.  This version of the project
            (01) has the accession number NZ_VZUR01000000, and consists of
            sequences VZUR01000001-VZUR01000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 254.16x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008806815.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:46:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,654
            CDSs (total)                      :: 3,591
            Genes (coding)                    :: 3,569
            CDSs (with protein)               :: 3,569
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 8 of 22
            Pseudo Genes (incomplete)         :: 15 of 22
            Pseudo Genes (internal stop)      :: 4 of 22
            Pseudo Genes (multiple problems)  :: 4 of 22
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3561692
                     /organism="Haloferax sp. CBA1148"
                     /mol_type="genomic DNA"
                     /strain="CBA1148"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2650752"
                     /geo_loc_name="South Korea"
WGS         VZUR01000001-VZUR01000003
WGS_SCAFLD  NZ_VZUR01000001-NZ_VZUR01000003
//
LOCUS       NZ_PHNJ01000000      5316806 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronococcus pandeyae strain LS1_42, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PHNJ00000000
VERSION     NZ_PHNJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08056113
            Assembly: GCF_008122205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronococcus pandeyae
  ORGANISM  Natronococcus pandeyae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 5316806)
  AUTHORS   Kajale,S.C. and Sharma,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2017) NCMR, NCCS, Pashan, Pune, Maharashtra
            411021, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PHNJ00000000.1.
            The Natronococcus pandeyae whole genome shotgun (WGS) project has
            the project accession NZ_PHNJ00000000.  This version of the project
            (01) has the accession number NZ_PHNJ01000000, and consists of
            sequences PHNJ01000001-PHNJ01000050.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-SEP-2017
            Assembly Method        :: PATRIC v. 3.4.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008122205.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:11:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,194
            CDSs (total)                      :: 5,137
            Genes (coding)                    :: 5,013
            CDSs (with protein)               :: 5,013
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 43 of 124
            Pseudo Genes (incomplete)         :: 93 of 124
            Pseudo Genes (internal stop)      :: 28 of 124
            Pseudo Genes (multiple problems)  :: 36 of 124
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5316806
                     /organism="Natronococcus pandeyae"
                     /mol_type="genomic DNA"
                     /strain="LS1_42"
                     /isolation_source="sediment"
                     /type_material="type strain of Natronococcus pandeyae"
                     /db_xref="taxon:2055836"
                     /geo_loc_name="India"
                     /collection_date="2016-06-28"
                     /collected_by="Swapnil Kajale"
                     /identified_by="Swapnil Kajale"
WGS         PHNJ01000001-PHNJ01000050
WGS_SCAFLD  NZ_PHNJ01000001-NZ_PHNJ01000050
//
LOCUS       NZ_FMZP01000000      3914132 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natrinema hispanicum strain CDM_1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FMZP00000000
VERSION     NZ_FMZP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05192552
            Assembly: GCF_900101245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema hispanicum
  ORGANISM  Natrinema hispanicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FMZP00000000.1.
            The Natrinema hispanicum whole genome shotgun (WGS) project has the
            project accession NZ_FMZP00000000.  This version of the project
            (01) has the accession number NZ_FMZP01000000, and consists of
            sequences FMZP01000001-FMZP01000135.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900101245.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:12:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,074
            CDSs (total)                      :: 4,016
            Genes (coding)                    :: 3,841
            CDSs (with protein)               :: 3,841
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 36 of 175
            Pseudo Genes (incomplete)         :: 156 of 175
            Pseudo Genes (internal stop)      :: 16 of 175
            Pseudo Genes (multiple problems)  :: 28 of 175
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3914132
                     /organism="Natrinema hispanicum"
                     /mol_type="genomic DNA"
                     /strain="CDM_1"
                     /db_xref="taxon:392421"
WGS         FMZP01000001-FMZP01000135
WGS_SCAFLD  NZ_FMZP01000001-NZ_FMZP01000135
//
LOCUS       NZ_FPAO01000000      3099467 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanosarcina thermophila strain DSM 11855, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FPAO00000000
VERSION     NZ_FPAO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02910340
            Assembly: GCF_900116525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina thermophila
  ORGANISM  Methanosarcina thermophila
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3099467)
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FPAO00000000.1.
            The Methanosarcina thermophila whole genome shotgun (WGS) project
            has the project accession NZ_FPAO00000000.  This version of the
            project (01) has the accession number NZ_FPAO01000000, and consists
            of sequences FPAO01000001-FPAO01000023.
            The organism was changed from 'Methanosarcina sp. DSM 11855' to
            'Methanosarcina thermophila' in July  2020.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_900116525.1
            Current Name        :: Methanosarcina thermophila
            Previous Name       :: Methanosarcina sp. DSM 11855
            Date Updated        :: 2020-07-31
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_000969885.1
            A1 Name             :: Methanosarcina thermophila
            A1 ANI              :: 99.81%
            A1 Query Coverage   :: 96.88%
            A1 Subject Coverage :: 96.01%
            Analysis 2 (A2)     :: Query vs. NO-TYPE genome for previous name
            A2 Genome (subject) :: no-type
            A2 Name             :: Methanosarcina sp. DSM 11855
            A2 ANI              :: 0%
            A2 Query Coverage   :: 0%
            A2 Subject Coverage :: 0%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900116525.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:14:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,810
            CDSs (total)                      :: 2,740
            Genes (coding)                    :: 2,701
            CDSs (with protein)               :: 2,701
            Genes (RNA)                       :: 70
            rRNAs                             :: 3, 4, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 8 of 39
            Pseudo Genes (incomplete)         :: 26 of 39
            Pseudo Genes (internal stop)      :: 9 of 39
            Pseudo Genes (multiple problems)  :: 4 of 39
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3099467
                     /organism="Methanosarcina thermophila"
                     /mol_type="genomic DNA"
                     /strain="DSM 11855"
                     /db_xref="taxon:2210"
WGS         FPAO01000001-FPAO01000023
WGS_SCAFLD  NZ_FPAO01000001-NZ_FPAO01000023
//
LOCUS       NZ_VYIJ01000000      1450240 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Thermoplasma sp. isolate FL, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VYIJ00000000
VERSION     NZ_VYIJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12599110
            Assembly: GCF_008709555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermoplasma sp. (hot springs metagenome)
  ORGANISM  Thermoplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Thermoplasmataceae; Thermoplasma.
REFERENCE   1  (bases 1 to 1450240)
  AUTHORS   Korzhuk,A.V.
  TITLE     Microbe sample from Thermoplasma sp. FL
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1450240)
  AUTHORS   Korzhuk,A.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2019) Laboratory of Molecular Biotechnologies,
            The Institute of Cytology and Genetics, Prospekt Lavrentyeva 10,
            Novosibirsk, Novosibirsk Region 630090, Russian Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VYIJ00000000.1.
            The Thermoplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_VYIJ00000000.  This version of the project
            (01) has the accession number NZ_VYIJ01000000, and consists of
            sequences VYIJ01000001-VYIJ01000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 141.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008709555.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:41:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,522
            CDSs (total)                      :: 1,473
            Genes (coding)                    :: 1,448
            CDSs (with protein)               :: 1,448
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 0 of 25
            Pseudo Genes (incomplete)         :: 18 of 25
            Pseudo Genes (internal stop)      :: 8 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1450240
                     /organism="Thermoplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="FL"
                     /isolation_source="sediments of hot spring"
                     /db_xref="taxon:1973142"
                     /environmental_sample
                     /geo_loc_name="Russia:Kunashir Island, Faust Lake"
                     /lat_lon="44.003056 N 145.778611 E"
                     /collection_date="2017"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         VYIJ01000001-VYIJ01000046
WGS_SCAFLD  NZ_VYIJ01000001-NZ_VYIJ01000046
//
LOCUS       NZ_RKSM01000000      4048546 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. CBA1129, whole genome shotgun sequencing project.
ACCESSION   NZ_RKSM00000000
VERSION     NZ_RKSM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10412378
            Assembly: GCF_008729015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. CBA1129
  ORGANISM  Haloarcula sp. CBA1129
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4048546)
  AUTHORS   Roh,S.W. and Kim,J.
  TITLE     Genomic analysis of Haloarcula sp. CBA1129
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4048546)
  AUTHORS   Roh,S.W. and Kim,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-NOV-2018) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKSM00000000.1.
            The Haloarcula sp. CBA1129 whole genome shotgun (WGS) project has
            the project accession NZ_RKSM00000000.  This version of the project
            (01) has the accession number NZ_RKSM01000000, and consists of
            sequences RKSM01000001-RKSM01000005.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 336.58x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008729015.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:46:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,168
            CDSs (total)                      :: 4,101
            Genes (coding)                    :: 4,016
            CDSs (with protein)               :: 4,016
            Genes (RNA)                       :: 67
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 32 of 85
            Pseudo Genes (incomplete)         :: 58 of 85
            Pseudo Genes (internal stop)      :: 22 of 85
            Pseudo Genes (multiple problems)  :: 22 of 85
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4048546
                     /organism="Haloarcula sp. CBA1129"
                     /mol_type="genomic DNA"
                     /strain="CBA1129"
                     /db_xref="taxon:1853684"
                     /geo_loc_name="South Korea"
WGS         RKSM01000001-RKSM01000005
WGS_SCAFLD  NZ_RKSM01000001-NZ_RKSM01000005
//
LOCUS       NZ_FOPZ01000000      3184102 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum aquaticum strain CGMCC 1.6377, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FOPZ00000000
VERSION     NZ_FOPZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04488066
            Assembly: GCF_900113615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum aquaticum
  ORGANISM  Halorubrum aquaticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FOPZ00000000.1.
            The Halorubrum aquaticum whole genome shotgun (WGS) project has the
            project accession NZ_FOPZ00000000.  This version of the project
            (01) has the accession number NZ_FOPZ01000000, and consists of
            sequences FOPZ01000001-FOPZ01000040.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900113615.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:21:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,199
            CDSs (total)                      :: 3,145
            Genes (coding)                    :: 3,079
            CDSs (with protein)               :: 3,079
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 20 of 66
            Pseudo Genes (incomplete)         :: 48 of 66
            Pseudo Genes (internal stop)      :: 10 of 66
            Pseudo Genes (multiple problems)  :: 10 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184102
                     /organism="Halorubrum aquaticum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.6377"
                     /type_material="type strain of Halorubrum aquaticum"
                     /db_xref="taxon:387340"
WGS         FOPZ01000001-FOPZ01000040
WGS_SCAFLD  NZ_FOPZ01000001-NZ_FOPZ01000040
//
LOCUS       NZ_WHIZ01000000      1926104 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. 101 C5, whole genome shotgun sequencing project.
ACCESSION   NZ_WHIZ00000000
VERSION     NZ_WHIZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13025228
            Assembly: GCF_009372125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. 101 C5
  ORGANISM  Thermococcus sp. 101 C5
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1926104)
  AUTHORS   Kapse,N.G., Paliwal,V., Diwanay,S., Engineer,A.S. and
            Dhakephalkar,P.K.
  TITLE     Isolation, identification and description of a hyperthermophilic
            archaea; Thermococcus litoralis 101 C5 from Indian oil reservoirs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1926104)
  AUTHORS   Kapse,N.G., Paliwal,V., Diwanay,S., Engineer,A.S. and
            Dhakephalkar,P.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-OCT-2019) Bioenergy, Agharkar Research Institute, G.G
            Agarkar road, Pune, Maharastra 411004, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WHIZ00000000.1.
            The Thermococcus sp. 101 C5 whole genome shotgun (WGS) project has
            the project accession NZ_WHIZ00000000.  This version of the project
            (01) has the accession number NZ_WHIZ01000000, and consists of
            sequences WHIZ01000001-WHIZ01000119.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Bioenergy Group, Agharkar
            Research Institute, G.G.Agarkar Road, Pune 411004, Maharashtra,
            India.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2019
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 89.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009372125.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:43:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,232
            CDSs (total)                      :: 2,182
            Genes (coding)                    :: 2,099
            CDSs (with protein)               :: 2,099
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 13 of 83
            Pseudo Genes (incomplete)         :: 72 of 83
            Pseudo Genes (internal stop)      :: 5 of 83
            Pseudo Genes (multiple problems)  :: 6 of 83
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926104
                     /organism="Thermococcus sp. 101 C5"
                     /mol_type="genomic DNA"
                     /strain="101 C5"
                     /isolation_source="Produced water sample"
                     /db_xref="taxon:2654197"
                     /geo_loc_name="India: Gujarat"
                     /collection_date="2015-12"
WGS         WHIZ01000001-WHIZ01000119
WGS_SCAFLD  NZ_WHIZ01000001-NZ_WHIZ01000119
//
LOCUS       NZ_VZUU01000000      3480702 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. CBA1150, whole genome shotgun sequencing project.
ACCESSION   NZ_VZUU00000000
VERSION     NZ_VZUU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12855975
            Assembly: GCF_008806905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. CBA1150
  ORGANISM  Haloferax sp. CBA1150
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3480702)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Haloferax sp. CBA1150
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3480702)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju
            61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VZUU00000000.1.
            The Haloferax sp. CBA1150 whole genome shotgun (WGS) project has
            the project accession NZ_VZUU00000000.  This version of the project
            (01) has the accession number NZ_VZUU01000000, and consists of
            sequences VZUU01000001-VZUU01000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 336.64x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008806905.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:44:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,519
            CDSs (total)                      :: 3,455
            Genes (coding)                    :: 3,443
            CDSs (with protein)               :: 3,443
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 6 of 12
            Pseudo Genes (incomplete)         :: 6 of 12
            Pseudo Genes (internal stop)      :: 4 of 12
            Pseudo Genes (multiple problems)  :: 4 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3480702
                     /organism="Haloferax sp. CBA1150"
                     /mol_type="genomic DNA"
                     /strain="CBA1150"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2650754"
                     /geo_loc_name="South Korea"
WGS         VZUU01000001-VZUU01000003
WGS_SCAFLD  NZ_VZUU01000001-NZ_VZUU01000003
//
LOCUS       NZ_RPCX01000000      3999003 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. CBA1130, whole genome shotgun sequencing project.
ACCESSION   NZ_RPCX00000000
VERSION     NZ_RPCX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10417078
            Assembly: GCF_008729005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. CBA1130
  ORGANISM  Haloarcula sp. CBA1130
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3999003)
  AUTHORS   Roh,S.W. and Kim,J.
  TITLE     Genomic analysis of Haloarcular sp. CBA1130
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3999003)
  AUTHORS   Roh,S.W. and Kim,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-NOV-2018) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RPCX00000000.1.
            The Haloarcula sp. CBA1130 whole genome shotgun (WGS) project has
            the project accession NZ_RPCX00000000.  This version of the project
            (01) has the accession number NZ_RPCX01000000, and consists of
            sequences RPCX01000001-RPCX01000006.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 316.76x
            Sequencing Technology  :: PacBio RS II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008729005.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:43:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,091
            CDSs (total)                      :: 4,030
            Genes (coding)                    :: 3,947
            CDSs (with protein)               :: 3,947
            Genes (RNA)                       :: 61
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 33 of 83
            Pseudo Genes (incomplete)         :: 55 of 83
            Pseudo Genes (internal stop)      :: 22 of 83
            Pseudo Genes (multiple problems)  :: 22 of 83
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3999003
                     /organism="Haloarcula sp. CBA1130"
                     /mol_type="genomic DNA"
                     /strain="CBA1130"
                     /db_xref="taxon:1853685"
                     /geo_loc_name="South Korea"
WGS         RPCX01000001-RPCX01000006
WGS_SCAFLD  NZ_RPCX01000001-NZ_RPCX01000006
//
LOCUS       NZ_CABLZR010000000   2620233 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanomassiliicoccus luminyensis isolate MGYG-HGUT-02161, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CABLZR000000000
VERSION     NZ_CABLZR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5851665
            Assembly: GCF_902383895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomassiliicoccus luminyensis
  ORGANISM  Methanomassiliicoccus luminyensis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2019) EMG, The European Bioinformatics Institute
            (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABLZR000000000.1.
            The Methanomassiliicoccus luminyensis whole genome shotgun (WGS)
            project has the project accession NZ_CABLZR000000000.  This version
            of the project (01) has the accession number NZ_CABLZR010000000,
            and consists of sequences CABLZR010000001-CABLZR010000026.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902383895.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 06:30:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,671
            CDSs (total)                      :: 2,618
            Genes (coding)                    :: 2,587
            CDSs (with protein)               :: 2,587
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 21 of 31
            Pseudo Genes (internal stop)      :: 7 of 31
            Pseudo Genes (multiple problems)  :: 1 of 31
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620233
                     /organism="Methanomassiliicoccus luminyensis"
                     /mol_type="genomic DNA"
                     /isolate="MGYG-HGUT-02161"
                     /isolation_source="human gut"
                     /db_xref="taxon:1080712"
WGS         CABLZR010000001-CABLZR010000026
WGS_SCAFLD  NZ_CABLZR010000001-NZ_CABLZR010000026
//
LOCUS       NZ_VZUS01000000      3487106 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. CBA1149, whole genome shotgun sequencing project.
ACCESSION   NZ_VZUS00000000
VERSION     NZ_VZUS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12855970
            Assembly: GCF_008806915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. CBA1149
  ORGANISM  Haloferax sp. CBA1149
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3487106)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Haloferax sp. CBA1149
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3487106)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju
            61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VZUS00000000.1.
            The Haloferax sp. CBA1149 whole genome shotgun (WGS) project has
            the project accession NZ_VZUS00000000.  This version of the project
            (01) has the accession number NZ_VZUS01000000, and consists of
            sequences VZUS01000001-VZUS01000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: PacBio SMRT Analysis v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 254.16x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008806915.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:44:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,549
            CDSs (total)                      :: 3,484
            Genes (coding)                    :: 3,454
            CDSs (with protein)               :: 3,454
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 14 of 30
            Pseudo Genes (incomplete)         :: 20 of 30
            Pseudo Genes (internal stop)      :: 3 of 30
            Pseudo Genes (multiple problems)  :: 7 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487106
                     /organism="Haloferax sp. CBA1149"
                     /mol_type="genomic DNA"
                     /strain="CBA1149"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2650753"
                     /geo_loc_name="South Korea"
WGS         VZUS01000001-VZUS01000006
WGS_SCAFLD  NZ_VZUS01000001-NZ_VZUS01000006
//
LOCUS       NZ_CADAWA010000000   1932960 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG13677, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADAWA000000000
VERSION     NZ_CADAWA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151814
            Assembly: GCF_902791535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1932960)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADAWA000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADAWA000000000.  This version
            of the project (01) has the accession number NZ_CADAWA010000000,
            and consists of sequences CADAWA010000001-CADAWA010000087.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902791535.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:40:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,924
            CDSs (total)                      :: 1,894
            Genes (coding)                    :: 1,872
            CDSs (with protein)               :: 1,872
            Genes (RNA)                       :: 30
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 28
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 7 of 22
            Pseudo Genes (multiple problems)  :: 2 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932960
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG13677"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADAWA010000001-CADAWA010000087
WGS_SCAFLD  NZ_CADAWA010000001-NZ_CADAWA010000087
//
LOCUS       NZ_CADBKK010000000   1983380 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG14054, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADBKK000000000
VERSION     NZ_CADBKK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6152192
            Assembly: GCF_902795335.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1983380)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADBKK000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADBKK000000000.  This version
            of the project (01) has the accession number NZ_CADBKK010000000,
            and consists of sequences CADBKK010000001-CADBKK010000108.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902795335.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:40:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,961
            CDSs (total)                      :: 1,922
            Genes (coding)                    :: 1,871
            CDSs (with protein)               :: 1,871
            Genes (RNA)                       :: 39
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 12 of 51
            Pseudo Genes (incomplete)         :: 39 of 51
            Pseudo Genes (internal stop)      :: 1 of 51
            Pseudo Genes (multiple problems)  :: 1 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983380
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG14054"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADBKK010000001-CADBKK010000108
WGS_SCAFLD  NZ_CADBKK010000001-NZ_CADBKK010000108
//
LOCUS       NZ_WKJO01000000      3561692 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax litoreum strain MBLA0076, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WKJO00000000
VERSION     NZ_WKJO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13255718
            Assembly: GCF_009674605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax litoreum
  ORGANISM  Haloferax litoreum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3561692)
  AUTHORS   Seo,M.-J. and Cho,E.-S.
  TITLE     Whole genome sequence of Haloferax sp. MBLA0076
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3561692)
  AUTHORS   Seo,M.-J. and Cho,E.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2019) Department of Bioengineering and
            Nano-Bioengineering, Incheon National University, 119 Academy-ro,
            Yeonsu-gu, Incheon, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WKJO00000000.1.
            The Haloferax litoreum whole genome shotgun (WGS) project has the
            project accession NZ_WKJO00000000.  This version of the project
            (01) has the accession number NZ_WKJO01000000, and consists of
            sequences WKJO01000001-WKJO01000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Denovo assembly v. 7.0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 236.36x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009674605.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:51:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,654
            CDSs (total)                      :: 3,591
            Genes (coding)                    :: 3,569
            CDSs (with protein)               :: 3,569
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 8 of 22
            Pseudo Genes (incomplete)         :: 15 of 22
            Pseudo Genes (internal stop)      :: 4 of 22
            Pseudo Genes (multiple problems)  :: 4 of 22
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3561692
                     /organism="Haloferax litoreum"
                     /mol_type="genomic DNA"
                     /strain="MBLA0076"
                     /isolation_source="tidal flat"
                     /type_material="type strain of Haloferax litoreum"
                     /db_xref="taxon:2666140"
                     /geo_loc_name="South Korea"
                     /collection_date="2016-01"
                     /collected_by="Eui-Sang Cho"
WGS         WKJO01000001-WKJO01000003
WGS_SCAFLD  NZ_WKJO01000001-NZ_WKJO01000003
//
LOCUS       NZ_VTOJ01000000      4690830 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Salinigranum salinum strain YJ-50-S2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VTOJ00000000
VERSION     NZ_VTOJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12651047
            Assembly: GCF_009176545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinigranum salinum
  ORGANISM  Salinigranum salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Salinigranum.
REFERENCE   1  (bases 1 to 4690830)
  AUTHORS   Wang,Z., Xu,J.Q., Xu,W.M., Li,Y., Zhou,Y., Lu,Z.Z., Hou,J., Zhu,L.
            and Cui,H.L.
  TITLE     Salinigranum salinum sp. nov., isolated from a marine solar saltern
  JOURNAL   Int J Syst Evol Microbiol 66 (8), 3017-3021 (2016)
   PUBMED   27151192
REFERENCE   2  (bases 1 to 4690830)
  AUTHORS   Cui,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2019) Food and Biologicial Engineering, Jiangsu
            Universiry, Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VTOJ00000000.1.
            The Salinigranum salinum whole genome shotgun (WGS) project has the
            project accession NZ_VTOJ00000000.  This version of the project
            (01) has the accession number NZ_VTOJ01000000, and consists of
            sequences VTOJ01000001-VTOJ01000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. AUG-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009176545.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:52:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,523
            CDSs (total)                      :: 4,469
            Genes (coding)                    :: 4,420
            CDSs (with protein)               :: 4,420
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 19 of 49
            Pseudo Genes (incomplete)         :: 36 of 49
            Pseudo Genes (internal stop)      :: 8 of 49
            Pseudo Genes (multiple problems)  :: 11 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4690830
                     /organism="Salinigranum salinum"
                     /mol_type="genomic DNA"
                     /strain="YJ-50-S2"
                     /isolation_source="soil from Yangjiang marine saltern in
                     southern region of China"
                     /host="Cui Henglin"
                     /type_material="type strain of Salinigranum salinum"
                     /db_xref="taxon:1364937"
                     /geo_loc_name="China: Guangdong Province"
                     /collection_date="2012"
WGS         VTOJ01000001-VTOJ01000005
WGS_SCAFLD  NZ_VTOJ01000001-NZ_VTOJ01000005
//
LOCUS       NZ_CACVSG010000000   2324358 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10188, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACVSG000000000
VERSION     NZ_CACVSG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6148321
            Assembly: GCF_902756745.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2324358)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACVSG000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACVSG000000000.  This version
            of the project (01) has the accession number NZ_CACVSG010000000,
            and consists of sequences CACVSG010000001-CACVSG010000086.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902756745.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:37:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,148
            CDSs (total)                      :: 2,114
            Genes (coding)                    :: 2,078
            CDSs (with protein)               :: 2,078
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 22 of 36
            Pseudo Genes (internal stop)      :: 3 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324358
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10188"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACVSG010000001-CACVSG010000086
WGS_SCAFLD  NZ_CACVSG010000001-NZ_CACVSG010000086
//
LOCUS       NZ_CACZTX010000000   2046587 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG12946, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACZTX000000000
VERSION     NZ_CACZTX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151082
            Assembly: GCF_902784195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2046587)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACZTX000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACZTX000000000.  This version
            of the project (01) has the accession number NZ_CACZTX010000000,
            and consists of sequences CACZTX010000001-CACZTX010000018.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902784195.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:41:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,932
            CDSs (total)                      :: 1,893
            Genes (coding)                    :: 1,876
            CDSs (with protein)               :: 1,876
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 8 of 17
            Pseudo Genes (incomplete)         :: 9 of 17
            Pseudo Genes (internal stop)      :: 0 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046587
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG12946"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACZTX010000001-CACZTX010000018
WGS_SCAFLD  NZ_CACZTX010000001-NZ_CACZTX010000018
//
LOCUS       NZ_CACWVY010000000   2750412 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10962, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACWVY000000000
VERSION     NZ_CACWVY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6149096
            Assembly: GCF_902764455.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2750412)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACWVY000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACWVY000000000.  This version
            of the project (01) has the accession number NZ_CACWVY010000000,
            and consists of sequences CACWVY010000001-CACWVY010000085.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902764455.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:40:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,547
            CDSs (total)                      :: 2,509
            Genes (coding)                    :: 2,474
            CDSs (with protein)               :: 2,474
            Genes (RNA)                       :: 38
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 16 of 35
            Pseudo Genes (incomplete)         :: 18 of 35
            Pseudo Genes (internal stop)      :: 4 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750412
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10962"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACWVY010000001-CACWVY010000085
WGS_SCAFLD  NZ_CACWVY010000001-NZ_CACWVY010000085
//
LOCUS       NZ_CACXXB010000000   2175250 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG11674, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACXXB000000000
VERSION     NZ_CACXXB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6149809
            Assembly: GCF_902771435.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2175250)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACXXB000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACXXB000000000.  This version
            of the project (01) has the accession number NZ_CACXXB010000000,
            and consists of sequences CACXXB010000001-CACXXB010000101.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902771435.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:42:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,151
            CDSs (total)                      :: 2,115
            Genes (coding)                    :: 2,070
            CDSs (with protein)               :: 2,070
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 26 of 45
            Pseudo Genes (incomplete)         :: 21 of 45
            Pseudo Genes (internal stop)      :: 1 of 45
            Pseudo Genes (multiple problems)  :: 3 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175250
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG11674"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACXXB010000001-CACXXB010000101
WGS_SCAFLD  NZ_CACXXB010000001-NZ_CACXXB010000101
//
LOCUS       NZ_CACWQZ010000000   2128197 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10830, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACWQZ000000000
VERSION     NZ_CACWQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6148964
            Assembly: GCF_902763115.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2128197)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACWQZ000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACWQZ000000000.  This version
            of the project (01) has the accession number NZ_CACWQZ010000000,
            and consists of sequences CACWQZ010000001-CACWQZ010000064.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902763115.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:38:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,090
            CDSs (total)                      :: 2,054
            Genes (coding)                    :: 2,038
            CDSs (with protein)               :: 2,038
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 2 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 32
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 6 of 16
            Pseudo Genes (incomplete)         :: 8 of 16
            Pseudo Genes (internal stop)      :: 3 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128197
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10830"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACWQZ010000001-CACWQZ010000064
WGS_SCAFLD  NZ_CACWQZ010000001-NZ_CACWQZ010000064
//
LOCUS       NZ_CADADM010000000   1660648 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG13199, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADADM000000000
VERSION     NZ_CADADM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151336
            Assembly: GCF_902786715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1660648)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADADM000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADADM000000000.  This version
            of the project (01) has the accession number NZ_CADADM010000000,
            and consists of sequences CADADM010000001-CADADM010000099.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902786715.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:39:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,778
            CDSs (total)                      :: 1,743
            Genes (coding)                    :: 1,706
            CDSs (with protein)               :: 1,706
            Genes (RNA)                       :: 35
            rRNAs                             :: 2 (16S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 12 of 37
            Pseudo Genes (incomplete)         :: 24 of 37
            Pseudo Genes (internal stop)      :: 1 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660648
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG13199"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADADM010000001-CADADM010000099
WGS_SCAFLD  NZ_CADADM010000001-NZ_CADADM010000099
//
LOCUS       NZ_CACXWH010000000   2359296 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG11657, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACXWH000000000
VERSION     NZ_CACXWH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6149792
            Assembly: GCF_902771225.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2359296)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACXWH000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACXWH000000000.  This version
            of the project (01) has the accession number NZ_CACXWH010000000,
            and consists of sequences CACXWH010000001-CACXWH010000122.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902771225.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:39:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,234
            CDSs (total)                      :: 2,196
            Genes (coding)                    :: 2,143
            CDSs (with protein)               :: 2,143
            Genes (RNA)                       :: 38
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 11 of 53
            Pseudo Genes (incomplete)         :: 39 of 53
            Pseudo Genes (internal stop)      :: 3 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359296
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG11657"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACXWH010000001-CACXWH010000122
WGS_SCAFLD  NZ_CACXWH010000001-NZ_CACXWH010000122
//
LOCUS       NZ_CACZVW010000000   2540175 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG12995, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACZVW000000000
VERSION     NZ_CACZVW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151131
            Assembly: GCF_902784715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2540175)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACZVW000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACZVW000000000.  This version
            of the project (01) has the accession number NZ_CACZVW010000000,
            and consists of sequences CACZVW010000001-CACZVW010000095.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902784715.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:42:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,412
            CDSs (total)                      :: 2,383
            Genes (coding)                    :: 2,333
            CDSs (with protein)               :: 2,333
            Genes (RNA)                       :: 29
            tRNAs                             :: 28
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 22 of 50
            Pseudo Genes (incomplete)         :: 28 of 50
            Pseudo Genes (internal stop)      :: 0 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540175
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG12995"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACZVW010000001-CACZVW010000095
WGS_SCAFLD  NZ_CACZVW010000001-NZ_CACZVW010000095
//
LOCUS       NZ_CADABJ010000000   1843544 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG13139, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADABJ000000000
VERSION     NZ_CADABJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151276
            Assembly: GCF_902786095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1843544)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADABJ000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADABJ000000000.  This version
            of the project (01) has the accession number NZ_CADABJ010000000,
            and consists of sequences CADABJ010000001-CADABJ010000140.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902786095.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:44:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,694
            CDSs (total)                      :: 1,657
            Genes (coding)                    :: 1,621
            CDSs (with protein)               :: 1,621
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 1 of 36
            Pseudo Genes (frameshifted)       :: 10 of 36
            Pseudo Genes (incomplete)         :: 24 of 36
            Pseudo Genes (internal stop)      :: 2 of 36
            Pseudo Genes (multiple problems)  :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843544
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG13139"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADABJ010000001-CADABJ010000140
WGS_SCAFLD  NZ_CADABJ010000001-NZ_CADABJ010000140
//
LOCUS       NZ_CACWCH010000000   2532218 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10452, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACWCH000000000
VERSION     NZ_CACWCH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6148585
            Assembly: GCF_902759285.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2532218)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACWCH000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACWCH000000000.  This version
            of the project (01) has the accession number NZ_CACWCH010000000,
            and consists of sequences CACWCH010000001-CACWCH010000166.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902759285.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:41:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,398
            CDSs (total)                      :: 2,365
            Genes (coding)                    :: 2,295
            CDSs (with protein)               :: 2,295
            Genes (RNA)                       :: 33
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 21 of 70
            Pseudo Genes (incomplete)         :: 48 of 70
            Pseudo Genes (internal stop)      :: 6 of 70
            Pseudo Genes (multiple problems)  :: 4 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532218
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10452"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACWCH010000001-CACWCH010000166
WGS_SCAFLD  NZ_CACWCH010000001-NZ_CACWCH010000166
//
LOCUS       NZ_CACVUD010000000   1863137 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10244, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACVUD000000000
VERSION     NZ_CACVUD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6148377
            Assembly: GCF_902757275.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1863137)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACVUD000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACVUD000000000.  This version
            of the project (01) has the accession number NZ_CACVUD010000000,
            and consists of sequences CACVUD010000001-CACVUD010000023.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902757275.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:42:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,662
            CDSs (total)                      :: 1,622
            Genes (coding)                    :: 1,610
            CDSs (with protein)               :: 1,610
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 11 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863137
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10244"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACVUD010000001-CACVUD010000023
WGS_SCAFLD  NZ_CACVUD010000001-NZ_CACVUD010000023
//
LOCUS       NZ_CADCEM010000000   1970101 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG14577, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADCEM000000000
VERSION     NZ_CADCEM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6152716
            Assembly: GCF_902800515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 1970101)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADCEM000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADCEM000000000.  This version
            of the project (01) has the accession number NZ_CADCEM010000000,
            and consists of sequences CADCEM010000001-CADCEM010000084.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902800515.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:44:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,995
            CDSs (total)                      :: 1,960
            Genes (coding)                    :: 1,922
            CDSs (with protein)               :: 1,922
            Genes (RNA)                       :: 35
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 18 of 38
            Pseudo Genes (incomplete)         :: 22 of 38
            Pseudo Genes (internal stop)      :: 1 of 38
            Pseudo Genes (multiple problems)  :: 2 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970101
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG14577"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADCEM010000001-CADCEM010000084
WGS_SCAFLD  NZ_CADCEM010000001-NZ_CADCEM010000084
//
LOCUS       NZ_CACYJE010000000   2138205 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG11987, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACYJE000000000
VERSION     NZ_CACYJE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6150122
            Assembly: GCF_902774605.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2138205)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACYJE000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACYJE000000000.  This version
            of the project (01) has the accession number NZ_CACYJE010000000,
            and consists of sequences CACYJE010000001-CACYJE010000108.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902774605.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:42:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,167
            CDSs (total)                      :: 2,129
            Genes (coding)                    :: 2,092
            CDSs (with protein)               :: 2,092
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 6 of 37
            Pseudo Genes (incomplete)         :: 30 of 37
            Pseudo Genes (internal stop)      :: 1 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138205
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG11987"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACYJE010000001-CACYJE010000108
WGS_SCAFLD  NZ_CACYJE010000001-NZ_CACYJE010000108
//
LOCUS       NZ_JAAAWJ010000000   2189363 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanogenium sp. MK-MG, whole genome shotgun sequencing project.
ACCESSION   NZ_JAAAWJ000000000
VERSION     NZ_JAAAWJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12405818
            Assembly: GCF_009914725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanogenium sp. MK-MG
  ORGANISM  Methanogenium sp. MK-MG
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanogenium.
REFERENCE   1  (bases 1 to 2189363)
  AUTHORS   Imachi,H., Nobu,M.K., Nakahara,N., Morono,Y., Ogawara,M.,
            Takaki,Y., Takano,Y., Uematsu,K., Ikuta,T., Ito,M., Matsui,Y.,
            Miyazaki,M., Murata,K., Saito,Y., Sakai,S., Song,C., Tasumi,E.,
            Yamanaka,Y., Yamaguchi,T., Kamagata,Y., Tamaki,H. and Takai,K.
  TITLE     Isolation of an archaeon at the prokaryote-eukaryote interface
  JOURNAL   Nature 577 (7791), 519-525 (2020)
   PUBMED   31942073
REFERENCE   2  (bases 1 to 2189363)
  AUTHORS   Imachi,H., Nobu,M.K., Nakahara,N., Morono,Y., Ogawara,M.,
            Takaki,Y., Takano,Y., Uematsu,K., Ikuta,T., Ito,M., Matsui,Y.,
            Miyazaki,M., Murata,K., Saito,Y., Sakai,S., Song,C., Tasumi,E.,
            Yamanaka,Y., Yamaguchi,T., Kamagata,Y., Tamaki,H. and Takai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2020) Bioproduction Research Institute, National
            Institute of Advanced Industrial Science and Technology, 1-1-1
            Higashi, Tsukuba, Ibaraki 3058566, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAAWJ000000000.1.
            The Methanogenium sp. MK-MG whole genome shotgun (WGS) project has
            the project accession NZ_JAAAWJ000000000.  This version of the
            project (01) has the accession number NZ_JAAAWJ010000000, and
            consists of sequences JAAAWJ010000001-JAAAWJ010000146.
            SAMN12405818.
            Bacteria and source DNA available from Hiroyuki Imachi, JAMSTEC,
            Japan.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.1.1
            Genome Coverage       :: 66x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009914725.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:05:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,303
            CDSs (total)                      :: 2,246
            Genes (coding)                    :: 2,195
            CDSs (with protein)               :: 2,195
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 5 of 51
            Pseudo Genes (incomplete)         :: 48 of 51
            Pseudo Genes (internal stop)      :: 4 of 51
            Pseudo Genes (multiple problems)  :: 6 of 51
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189363
                     /organism="Methanogenium sp. MK-MG"
                     /mol_type="genomic DNA"
                     /strain="MK-MG"
                     /isolation_source="marine sediment"
                     /db_xref="taxon:2599926"
                     /geo_loc_name="Japan: Omine Ridge, Nankai Trough"
                     /collection_date="2006-05-06"
WGS         JAAAWJ010000001-JAAAWJ010000146
WGS_SCAFLD  NZ_JAAAWJ010000001-NZ_JAAAWJ010000146
//
LOCUS       NZ_CADBVW010000000   2302825 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG14349, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADBVW000000000
VERSION     NZ_CADBVW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6152487
            Assembly: GCF_902798335.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2302825)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADBVW000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADBVW000000000.  This version
            of the project (01) has the accession number NZ_CADBVW010000000,
            and consists of sequences CADBVW010000001-CADBVW010000045.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902798335.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:43:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,172
            CDSs (total)                      :: 2,134
            Genes (coding)                    :: 2,122
            CDSs (with protein)               :: 2,122
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 2 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 2 of 12
            Pseudo Genes (incomplete)         :: 8 of 12
            Pseudo Genes (internal stop)      :: 3 of 12
            Pseudo Genes (multiple problems)  :: 1 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302825
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG14349"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADBVW010000001-CADBVW010000045
WGS_SCAFLD  NZ_CADBVW010000001-NZ_CADBVW010000045
//
LOCUS       NZ_CACWNH010000000   2801489 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10736, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACWNH000000000
VERSION     NZ_CACWNH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6148869
            Assembly: GCF_902762095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2801489)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACWNH000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACWNH000000000.  This version
            of the project (01) has the accession number NZ_CACWNH010000000,
            and consists of sequences CACWNH010000001-CACWNH010000342.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902762095.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:42:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,735
            CDSs (total)                      :: 2,703
            Genes (coding)                    :: 2,569
            CDSs (with protein)               :: 2,569
            Genes (RNA)                       :: 32
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 49 of 134
            Pseudo Genes (incomplete)         :: 91 of 134
            Pseudo Genes (internal stop)      :: 5 of 134
            Pseudo Genes (multiple problems)  :: 10 of 134
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2801489
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10736"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACWNH010000001-CACWNH010000342
WGS_SCAFLD  NZ_CACWNH010000001-NZ_CACWNH010000342
//
LOCUS       NZ_CADAAJ010000000   2155049 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG13115, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADAAJ000000000
VERSION     NZ_CADAAJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151252
            Assembly: GCF_902785855.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2155049)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADAAJ000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADAAJ000000000.  This version
            of the project (01) has the accession number NZ_CADAAJ010000000,
            and consists of sequences CADAAJ010000001-CADAAJ010000137.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902785855.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:44:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,027
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,936
            CDSs (with protein)               :: 1,936
            Genes (RNA)                       :: 32
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 15 of 59
            Pseudo Genes (incomplete)         :: 44 of 59
            Pseudo Genes (internal stop)      :: 1 of 59
            Pseudo Genes (multiple problems)  :: 1 of 59
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155049
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG13115"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADAAJ010000001-CADAAJ010000137
WGS_SCAFLD  NZ_CADAAJ010000001-NZ_CADAAJ010000137
//
LOCUS       NZ_WPCC01000000      3452035 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronomonas sp. CBA1123, whole genome shotgun sequencing project.
ACCESSION   NZ_WPCC00000000
VERSION     NZ_WPCC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13266922
            Assembly: GCF_009741925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronomonas sp. CBA1123
  ORGANISM  Natronomonas sp. CBA1123
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 3452035)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Natronomonas sp. CBA1123
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3452035)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WPCC00000000.1.
            The Natronomonas sp. CBA1123 whole genome shotgun (WGS) project has
            the project accession NZ_WPCC00000000.  This version of the project
            (01) has the accession number NZ_WPCC01000000, and consists of
            sequences WPCC01000001-WPCC01000089.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomics Workbench v. 6.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 349.6x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009741925.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:04:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,763
            CDSs (total)                      :: 3,714
            Genes (coding)                    :: 3,539
            CDSs (with protein)               :: 3,539
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 98 of 175
            Pseudo Genes (incomplete)         :: 84 of 175
            Pseudo Genes (internal stop)      :: 1 of 175
            Pseudo Genes (multiple problems)  :: 7 of 175
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3452035
                     /organism="Natronomonas sp. CBA1123"
                     /mol_type="genomic DNA"
                     /strain="CBA1123"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2668070"
                     /geo_loc_name="South Korea"
WGS         WPCC01000001-WPCC01000089
WGS_SCAFLD  NZ_WPCC01000001-NZ_WPCC01000089
//
LOCUS       NZ_CACYZI010000000   2968281 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG12411, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACYZI000000000
VERSION     NZ_CACYZI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6150547
            Assembly: GCF_902778875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2968281)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACYZI000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACYZI000000000.  This version
            of the project (01) has the accession number NZ_CACYZI010000000,
            and consists of sequences CACYZI010000001-CACYZI010000109.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902778875.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:45:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,960
            CDSs (total)                      :: 2,889
            Genes (coding)                    :: 2,831
            CDSs (with protein)               :: 2,831
            Genes (RNA)                       :: 71
            tRNAs                             :: 69
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 17 of 58
            Pseudo Genes (incomplete)         :: 40 of 58
            Pseudo Genes (internal stop)      :: 4 of 58
            Pseudo Genes (multiple problems)  :: 2 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2968281
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG12411"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACYZI010000001-CACYZI010000109
WGS_SCAFLD  NZ_CACYZI010000001-NZ_CACYZI010000109
//
LOCUS       NZ_CADCFK010000000   2711132 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG14594, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADCFK000000000
VERSION     NZ_CADCFK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6152733
            Assembly: GCF_902800615.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2711132)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADCFK000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADCFK000000000.  This version
            of the project (01) has the accession number NZ_CADCFK010000000,
            and consists of sequences CADCFK010000001-CADCFK010000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902800615.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:43:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,509
            CDSs (total)                      :: 2,471
            Genes (coding)                    :: 2,445
            CDSs (with protein)               :: 2,445
            Genes (RNA)                       :: 38
            rRNAs                             :: 2 (16S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 14 of 26
            Pseudo Genes (incomplete)         :: 15 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 4 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711132
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG14594"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADCFK010000001-CADCFK010000055
WGS_SCAFLD  NZ_CADCFK010000001-NZ_CADCFK010000055
//
LOCUS       NZ_CADAJR010000000   2196796 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG13354, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADAJR000000000
VERSION     NZ_CADAJR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6151491
            Assembly: GCF_902788255.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2196796)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADAJR000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADAJR000000000.  This version
            of the project (01) has the accession number NZ_CADAJR010000000,
            and consists of sequences CADAJR010000001-CADAJR010000069.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902788255.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:48:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,257
            CDSs (total)                      :: 2,220
            Genes (coding)                    :: 2,193
            CDSs (with protein)               :: 2,193
            Genes (RNA)                       :: 37
            rRNAs                             :: 2 (16S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 8 of 27
            Pseudo Genes (incomplete)         :: 17 of 27
            Pseudo Genes (internal stop)      :: 4 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196796
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG13354"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADAJR010000001-CADAJR010000069
WGS_SCAFLD  NZ_CADAJR010000001-NZ_CADAJR010000069
//
LOCUS       NZ_CACXNW010000000   3124642 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG11428, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACXNW000000000
VERSION     NZ_CACXNW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6149562
            Assembly: GCF_902769175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 3124642)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACXNW000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACXNW000000000.  This version
            of the project (01) has the accession number NZ_CACXNW010000000,
            and consists of sequences CACXNW010000001-CACXNW010000065.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902769175.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:48:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,721
            CDSs (total)                      :: 2,677
            Genes (coding)                    :: 2,566
            CDSs (with protein)               :: 2,566
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 43 of 111
            Pseudo Genes (incomplete)         :: 51 of 111
            Pseudo Genes (internal stop)      :: 27 of 111
            Pseudo Genes (multiple problems)  :: 10 of 111
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124642
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG11428"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACXNW010000001-CACXNW010000065
WGS_SCAFLD  NZ_CACXNW010000001-NZ_CACXNW010000065
//
LOCUS       NZ_CACXRW010000000   2419668 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG11531, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACXRW000000000
VERSION     NZ_CACXRW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6149665
            Assembly: GCF_902770085.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2419668)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACXRW000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACXRW000000000.  This version
            of the project (01) has the accession number NZ_CACXRW010000000,
            and consists of sequences CACXRW010000001-CACXRW010000209.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902770085.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:45:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,279
            CDSs (total)                      :: 2,242
            Genes (coding)                    :: 2,179
            CDSs (with protein)               :: 2,179
            Genes (RNA)                       :: 37
            rRNAs                             :: 2 (23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 14 of 63
            Pseudo Genes (incomplete)         :: 50 of 63
            Pseudo Genes (internal stop)      :: 3 of 63
            Pseudo Genes (multiple problems)  :: 3 of 63
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2419668
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG11531"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACXRW010000001-CACXRW010000209
WGS_SCAFLD  NZ_CACXRW010000001-NZ_CACXRW010000209
//
LOCUS       NZ_CACWNM010000000   2334395 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG10743, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CACWNM000000000
VERSION     NZ_CACWNM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6148876
            Assembly: GCF_902762245.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2334395)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACWNM000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CACWNM000000000.  This version
            of the project (01) has the accession number NZ_CACWNM010000000,
            and consists of sequences CACWNM010000001-CACWNM010000066.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902762245.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:44:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,178
            CDSs (total)                      :: 2,143
            Genes (coding)                    :: 2,102
            CDSs (with protein)               :: 2,102
            Genes (RNA)                       :: 35
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 21 of 41
            Pseudo Genes (incomplete)         :: 22 of 41
            Pseudo Genes (internal stop)      :: 3 of 41
            Pseudo Genes (multiple problems)  :: 3 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334395
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG10743"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CACWNM010000001-CACWNM010000066
WGS_SCAFLD  NZ_CACWNM010000001-NZ_CACWNM010000066
//
LOCUS       NZ_CADCKP010000000   2235547 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG14734, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADCKP000000000
VERSION     NZ_CADCKP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6152873
            Assembly: GCF_902802035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 2235547)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADCKP000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADCKP000000000.  This version
            of the project (01) has the accession number NZ_CADCKP010000000,
            and consists of sequences CADCKP010000001-CADCKP010000060.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902802035.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:48:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,094
            CDSs (total)                      :: 2,059
            Genes (coding)                    :: 2,033
            CDSs (with protein)               :: 2,033
            Genes (RNA)                       :: 35
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 8 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235547
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG14734"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADCKP010000001-CADCKP010000060
WGS_SCAFLD  NZ_CADCKP010000001-NZ_CADCKP010000060
//
LOCUS       NZ_WKJP01000000      3487106 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax marinisediminis strain MBLA0077, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WKJP00000000
VERSION     NZ_WKJP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13255723
            Assembly: GCF_009674585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax marinisediminis
  ORGANISM  Haloferax marinisediminis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3487106)
  AUTHORS   Seo,M.-J. and Cho,E.-S.
  TITLE     Whole genome sequence of Haloferax sp. MBLA0077
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3487106)
  AUTHORS   Seo,M.-J. and Cho,E.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2019) Department of Bioengineering and
            Nano-Bioengineering, Incheon National University, 119 Academy-ro,
            Yeonsu-gu, Incheon, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WKJP00000000.1.
            The Haloferax marinisediminis whole genome shotgun (WGS) project
            has the project accession NZ_WKJP00000000.  This version of the
            project (01) has the accession number NZ_WKJP01000000, and consists
            of sequences WKJP01000001-WKJP01000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Denovo assembly v. 7.0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 254.16x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009674585.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:56:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,550
            CDSs (total)                      :: 3,485
            Genes (coding)                    :: 3,456
            CDSs (with protein)               :: 3,456
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 14 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 7 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487106
                     /organism="Haloferax marinisediminis"
                     /mol_type="genomic DNA"
                     /strain="MBLA0077"
                     /isolation_source="tidal flat"
                     /type_material="type strain of Haloferax marinisediminis"
                     /db_xref="taxon:2666142"
                     /geo_loc_name="South Korea"
                     /collection_date="2016-01"
WGS         WKJP01000001-WKJP01000006
WGS_SCAFLD  NZ_WKJP01000001-NZ_WKJP01000006
//
LOCUS       NZ_WPCF01000000      2730868 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobacterium sp. CBA1126, whole genome shotgun sequencing project.
ACCESSION   NZ_WPCF00000000
VERSION     NZ_WPCF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13267012
            Assembly: GCF_009741975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium sp. CBA1126
  ORGANISM  Halobacterium sp. CBA1126
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2730868)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Halobacterium sp. CBA1126
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2730868)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WPCF00000000.1.
            The Halobacterium sp. CBA1126 whole genome shotgun (WGS) project
            has the project accession NZ_WPCF00000000.  This version of the
            project (01) has the accession number NZ_WPCF01000000, and consists
            of sequences WPCF01000001-WPCF01000209.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomics Workbench v. 6.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 497.91x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009741975.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:54:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,147
            CDSs (total)                      :: 3,099
            Genes (coding)                    :: 2,784
            CDSs (with protein)               :: 2,784
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 315
            CDSs (without protein)            :: 315
            Pseudo Genes (ambiguous residues) :: 0 of 315
            Pseudo Genes (frameshifted)       :: 203 of 315
            Pseudo Genes (incomplete)         :: 124 of 315
            Pseudo Genes (internal stop)      :: 10 of 315
            Pseudo Genes (multiple problems)  :: 20 of 315
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730868
                     /organism="Halobacterium sp. CBA1126"
                     /mol_type="genomic DNA"
                     /strain="CBA1126"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2668074"
                     /geo_loc_name="South Korea"
WGS         WPCF01000001-WPCF01000209
WGS_SCAFLD  NZ_WPCF01000001-NZ_WPCF01000209
//
LOCUS       NZ_WOWO01000000      3369022 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Salinirussus salinus strain YGH44, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WOWO00000000
VERSION     NZ_WOWO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13439345
            Assembly: GCF_009831455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinirussus salinus
  ORGANISM  Salinirussus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Salinirussus.
REFERENCE   1  (bases 1 to 3369022)
  AUTHORS   Cui,H.-L. and Han,D.
  TITLE     Genome sequence of Salinirussus salinus YGH44, isolated from a
            marine solar saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3369022)
  AUTHORS   Cui,H.-L. and Han,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WOWO00000000.1.
            The Salinirussus salinus whole genome shotgun (WGS) project has the
            project accession NZ_WOWO00000000.  This version of the project
            (01) has the accession number NZ_WOWO01000000, and consists of
            sequences WOWO01000001-WOWO01000004.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2019
            Assembly Method        :: SOAPdenovo v. MAY-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009831455.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:27:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,531
            CDSs (total)                      :: 3,470
            Genes (coding)                    :: 3,447
            CDSs (with protein)               :: 3,447
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 5 of 23
            Pseudo Genes (incomplete)         :: 18 of 23
            Pseudo Genes (internal stop)      :: 3 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369022
                     /organism="Salinirussus salinus"
                     /mol_type="genomic DNA"
                     /strain="YGH44"
                     /isolation_source="marine solar saltern"
                     /type_material="type strain of Salinirussus salinus"
                     /db_xref="taxon:1198300"
                     /geo_loc_name="China: Yinggehai, Hainan Province"
                     /collection_date="2010"
WGS         WOWO01000001-WOWO01000004
WGS_SCAFLD  NZ_WOWO01000001-NZ_WOWO01000004
//
LOCUS       NZ_WPCA01000000      2965017 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halapricum sp. CBA1109, whole genome shotgun sequencing project.
ACCESSION   NZ_WPCA00000000
VERSION     NZ_WPCA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13266885
            Assembly: GCF_009741825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halapricum sp. CBA1109
  ORGANISM  Halapricum sp. CBA1109
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halapricum.
REFERENCE   1  (bases 1 to 2965017)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Halapricum sp. CBA1109
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2965017)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WPCA00000000.1.
            The Halapricum sp. CBA1109 whole genome shotgun (WGS) project has
            the project accession NZ_WPCA00000000.  This version of the project
            (01) has the accession number NZ_WPCA01000000, and consists of
            sequences WPCA01000001-WPCA01000266.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomics Workbench v. 6.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 372.08x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009741825.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:57:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,331
            CDSs (total)                      :: 3,279
            Genes (coding)                    :: 2,832
            CDSs (with protein)               :: 2,832
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 3 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 447
            CDSs (without protein)            :: 447
            Pseudo Genes (ambiguous residues) :: 0 of 447
            Pseudo Genes (frameshifted)       :: 314 of 447
            Pseudo Genes (incomplete)         :: 152 of 447
            Pseudo Genes (internal stop)      :: 8 of 447
            Pseudo Genes (multiple problems)  :: 27 of 447
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2965017
                     /organism="Halapricum sp. CBA1109"
                     /mol_type="genomic DNA"
                     /strain="CBA1109"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2668068"
                     /geo_loc_name="South Korea"
WGS         WPCA01000001-WPCA01000266
WGS_SCAFLD  NZ_WPCA01000001-NZ_WPCA01000266
//
LOCUS       NZ_RQWK01000000      3896891 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula hispanica strain CBA1121, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RQWK00000000
VERSION     NZ_RQWK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10411032
            Assembly: GCF_008729095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula hispanica
  ORGANISM  Haloarcula hispanica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3896891)
  AUTHORS   Kim,Y.B. and Roh,S.W.
  TITLE     Genomic analysis of Haloarcula hispanica CBA1121
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3896891)
  AUTHORS   Kim,Y.B. and Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RQWK00000000.1.
            The Haloarcula hispanica whole genome shotgun (WGS) project has the
            project accession NZ_RQWK00000000.  This version of the project
            (01) has the accession number NZ_RQWK01000000, and consists of
            sequences RQWK01000001-RQWK01000005.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 221.7x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008729095.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:53:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,932
            CDSs (total)                      :: 3,874
            Genes (coding)                    :: 3,827
            CDSs (with protein)               :: 3,827
            Genes (RNA)                       :: 58
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 15 of 47
            Pseudo Genes (incomplete)         :: 36 of 47
            Pseudo Genes (internal stop)      :: 8 of 47
            Pseudo Genes (multiple problems)  :: 12 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3896891
                     /organism="Haloarcula hispanica"
                     /mol_type="genomic DNA"
                     /strain="CBA1121"
                     /isolation_source="solar salt"
                     /db_xref="taxon:51589"
                     /geo_loc_name="South Korea"
WGS         RQWK01000001-RQWK01000005
WGS_SCAFLD  NZ_RQWK01000001-NZ_RQWK01000005
//
LOCUS       NZ_QJOW01000000      2660501 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halosegnis rubeus strain F17-44, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QJOW00000000
VERSION     NZ_QJOW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09291540
            Assembly: GCF_009184545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosegnis rubeus
  ORGANISM  Halosegnis rubeus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1  (bases 1 to 2660501)
  AUTHORS   Duran-Viseras,A., Andrei,A.-S., Vera-Gargallo,B., Ghai,R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Unraveling microbial dark matter from salterns through culturing:
            the case of the genus Halosegnis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2660501)
  AUTHORS   Duran-Viseras,A., Andrei,A.-S., Vera-Gargallo,B., Ghai,R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2019) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QJOW00000000.1.
            The Halosegnis rubeus whole genome shotgun (WGS) project has the
            project accession NZ_QJOW00000000.  This version of the project
            (01) has the accession number NZ_QJOW01000000, and consists of
            sequences QJOW01000001-QJOW01000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 397.93x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009184545.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:02:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,875
            CDSs (total)                      :: 2,824
            Genes (coding)                    :: 2,759
            CDSs (with protein)               :: 2,759
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 16 of 65
            Pseudo Genes (incomplete)         :: 53 of 65
            Pseudo Genes (internal stop)      :: 6 of 65
            Pseudo Genes (multiple problems)  :: 10 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660501
                     /organism="Halosegnis rubeus"
                     /mol_type="genomic DNA"
                     /strain="F17-44"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halosegnis rubeus"
                     /db_xref="taxon:2212850"
                     /geo_loc_name="Spain: Isla Bacuta, Huelva"
                     /collection_date="2016-06-16"
WGS         QJOW01000001-QJOW01000012
WGS_SCAFLD  NZ_QJOW01000001-NZ_QJOW01000012
//
LOCUS       NZ_WKJQ01000000      3480702 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax marinum strain MBLA0078, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WKJQ00000000
VERSION     NZ_WKJQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13255728
            Assembly: GCF_009674625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax marinum
  ORGANISM  Haloferax marinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3480702)
  AUTHORS   Seo,M.-J. and Cho,E.-S.
  TITLE     Whole genome sequence of Haloferax sp. MBLA0078
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3480702)
  AUTHORS   Seo,M.-J. and Cho,E.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2019) Department of Bioengineering and
            Nano-Bioengineering, Incheon National University, 119 Academy-ro,
            Yeonsu-gu, Incheon, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WKJQ00000000.1.
            The Haloferax marinum whole genome shotgun (WGS) project has the
            project accession NZ_WKJQ00000000.  This version of the project
            (01) has the accession number NZ_WKJQ01000000, and consists of
            sequences WKJQ01000001-WKJQ01000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Denovo assembly v. 7.0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 336.64x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009674625.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 10:56:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,519
            CDSs (total)                      :: 3,455
            Genes (coding)                    :: 3,443
            CDSs (with protein)               :: 3,443
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 6 of 12
            Pseudo Genes (incomplete)         :: 6 of 12
            Pseudo Genes (internal stop)      :: 4 of 12
            Pseudo Genes (multiple problems)  :: 4 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3480702
                     /organism="Haloferax marinum"
                     /mol_type="genomic DNA"
                     /strain="MBLA0078"
                     /isolation_source="Sea water"
                     /type_material="type strain of Haloferax marinum"
                     /db_xref="taxon:2666143"
                     /geo_loc_name="South Korea: Incheon"
                     /lat_lon="37.26 N 126.50 E"
                     /collection_date="2016-01"
                     /collected_by="Eui-Sang Cho"
WGS         WKJQ01000001-WKJQ01000003
WGS_SCAFLD  NZ_WKJQ01000001-NZ_WKJQ01000003
//
LOCUS       NZ_WPCB01000000      3798625 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. CBA1122, whole genome shotgun sequencing project.
ACCESSION   NZ_WPCB00000000
VERSION     NZ_WPCB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13266887
            Assembly: GCF_009741785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. CBA1122
  ORGANISM  Haloarcula sp. CBA1122
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3798625)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Haloarcula sp. CBA1122
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3798625)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WPCB00000000.1.
            The Haloarcula sp. CBA1122 whole genome shotgun (WGS) project has
            the project accession NZ_WPCB00000000.  This version of the project
            (01) has the accession number NZ_WPCB01000000, and consists of
            sequences WPCB01000001-WPCB01000109.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomics Workbench v. 6.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 235.18x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009741785.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:03:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,973
            CDSs (total)                      :: 3,923
            Genes (coding)                    :: 3,615
            CDSs (with protein)               :: 3,615
            Genes (RNA)                       :: 50
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 308
            CDSs (without protein)            :: 308
            Pseudo Genes (ambiguous residues) :: 0 of 308
            Pseudo Genes (frameshifted)       :: 245 of 308
            Pseudo Genes (incomplete)         :: 85 of 308
            Pseudo Genes (internal stop)      :: 11 of 308
            Pseudo Genes (multiple problems)  :: 33 of 308
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798625
                     /organism="Haloarcula sp. CBA1122"
                     /mol_type="genomic DNA"
                     /strain="CBA1122"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2668069"
                     /geo_loc_name="South Korea"
WGS         WPCB01000001-WPCB01000109
WGS_SCAFLD  NZ_WPCB01000001-NZ_WPCB01000109
//
LOCUS       NZ_WPCE01000000      3230170 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. CBA1125, whole genome shotgun sequencing project.
ACCESSION   NZ_WPCE00000000
VERSION     NZ_WPCE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13266925
            Assembly: GCF_009742825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. CBA1125
  ORGANISM  Halorubrum sp. CBA1125
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3230170)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Halorubrum sp. CBA1125
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3230170)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WPCE00000000.1.
            The Halorubrum sp. CBA1125 whole genome shotgun (WGS) project has
            the project accession NZ_WPCE00000000.  This version of the project
            (01) has the accession number NZ_WPCE01000000, and consists of
            sequences WPCE01000001-WPCE01000379.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomics Workbench v. 6.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 411.03x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009742825.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:00:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,469
            CDSs (total)                      :: 3,420
            Genes (coding)                    :: 2,903
            CDSs (with protein)               :: 2,903
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 517
            CDSs (without protein)            :: 517
            Pseudo Genes (ambiguous residues) :: 0 of 517
            Pseudo Genes (frameshifted)       :: 353 of 517
            Pseudo Genes (incomplete)         :: 213 of 517
            Pseudo Genes (internal stop)      :: 25 of 517
            Pseudo Genes (multiple problems)  :: 66 of 517
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3230170
                     /organism="Halorubrum sp. CBA1125"
                     /mol_type="genomic DNA"
                     /strain="CBA1125"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2668072"
                     /geo_loc_name="South Korea"
WGS         WPCE01000001-WPCE01000379
WGS_SCAFLD  NZ_WPCE01000001-NZ_WPCE01000379
//
LOCUS       NZ_WUAX01000000      3108395 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum sp. JWXQ-INN 858, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WUAX00000000
VERSION     NZ_WUAX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13632794
            Assembly: GCF_009806985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. JWXQ-INN 858
  ORGANISM  Halorubrum sp. JWXQ-INN 858
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3108395)
  AUTHORS   Xue,Q.
  TITLE     Halorubrum sp. JWXQ-INN 858 isolated from Inner Mongolia Autonomous
            Region of China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3108395)
  AUTHORS   Xue,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2019) The Institute of Microbiology, Chinese
            Academy of Science, Beichen Xilu, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WUAX00000000.1.
            The Halorubrum sp. JWXQ-INN 858 whole genome shotgun (WGS) project
            has the project accession NZ_WUAX00000000.  This version of the
            project (01) has the accession number NZ_WUAX01000000, and consists
            of sequences WUAX01000001-WUAX01000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 414.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009806985.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:05:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,037
            CDSs (total)                      :: 2,982
            Genes (coding)                    :: 2,955
            CDSs (with protein)               :: 2,955
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 5 of 27
            Pseudo Genes (incomplete)         :: 19 of 27
            Pseudo Genes (internal stop)      :: 6 of 27
            Pseudo Genes (multiple problems)  :: 3 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108395
                     /organism="Halorubrum sp. JWXQ-INN 858"
                     /mol_type="genomic DNA"
                     /strain="JWXQ-INN 858"
                     /isolation_source="soda lake"
                     /db_xref="taxon:2690782"
                     /geo_loc_name="China: Inner Mongolia"
                     /collection_date="2017-04-27"
WGS         WUAX01000001-WUAX01000016
WGS_SCAFLD  NZ_WUAX01000001-NZ_WUAX01000016
//
LOCUS       NZ_QKNW01000000      2768215 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halosegnis longus strain F12-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QKNW00000000
VERSION     NZ_QKNW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09370565
            Assembly: GCF_009663395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosegnis longus
  ORGANISM  Halosegnis longus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1  (bases 1 to 2768215)
  AUTHORS   Duran-Viseras,A., Andrei,A.-S., Vera-Gargallo,B., Ghai,R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Unraveling microbial dark matter from salterns through culturing:
            the case of the genus Halosegnis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2768215)
  AUTHORS   Duran-Viseras,A., Andrei,A.-S., Vera-Gargallo,B., Ghai,R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2019) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QKNW00000000.1.
            The Halosegnis longus whole genome shotgun (WGS) project has the
            project accession NZ_QKNW00000000.  This version of the project
            (01) has the accession number NZ_QKNW01000000, and consists of
            sequences QKNW01000001-QKNW01000003.
            Bacteria and source DNA available from Dr. Antonio Ventosa.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: a5 v. OMICS_00005
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 414.03x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009663395.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:08:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,022
            CDSs (total)                      :: 2,972
            Genes (coding)                    :: 2,941
            CDSs (with protein)               :: 2,941
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 9 of 31
            Pseudo Genes (multiple problems)  :: 5 of 31
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2768215
                     /organism="Halosegnis longus"
                     /mol_type="genomic DNA"
                     /strain="F12-1"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halosegnis longus"
                     /db_xref="taxon:2216012"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06-29"
WGS         QKNW01000001-QKNW01000003
WGS_SCAFLD  NZ_QKNW01000001-NZ_QKNW01000003
//
LOCUS       NZ_WUUS01000000      3775766 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobaculum saliterrae strain WSA2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WUUS00000000
VERSION     NZ_WUUS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13675851
            Assembly: GCF_009831625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum saliterrae
  ORGANISM  Halobaculum saliterrae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 3775766)
  AUTHORS   Myers,M.R. and King,G.M.
  TITLE     Isolation and characterization of three novel carbon
            monoxide-oxidizing members of Halobacteria from salione crusts and
            soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3775766)
  AUTHORS   King,G.M. and Myers,M.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-DEC-2019) Biological Sciences, Louisiana State
            University, Department of Biological Sciences, Baton Rouge, LA
            70803, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WUUS00000000.1.
            The Halobaculum saliterrae whole genome shotgun (WGS) project has
            the project accession NZ_WUUS00000000.  This version of the project
            (01) has the accession number NZ_WUUS01000000, and consists of
            sequences WUUS01000001-WUUS01000021.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from American Type Culture
            Collection TSD-127.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 05-MAY-2017
            Assembly Method        :: A5-miseq v. MacOS_20140604
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 214.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009831625.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:09:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,796
            CDSs (total)                      :: 3,730
            Genes (coding)                    :: 3,680
            CDSs (with protein)               :: 3,680
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 4, 4 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 15 of 50
            Pseudo Genes (incomplete)         :: 41 of 50
            Pseudo Genes (internal stop)      :: 9 of 50
            Pseudo Genes (multiple problems)  :: 10 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3775766
                     /organism="Halobaculum saliterrae"
                     /mol_type="genomic DNA"
                     /strain="WSA2"
                     /isolation_source="hypersaline soil"
                     /type_material="type strain of Halobaculum saliterrae"
                     /db_xref="taxon:2073113"
                     /geo_loc_name="USA: Wendover, Utah"
                     /lat_lon="40.428661 N 114.015389 W"
                     /collection_date="2016-07"
WGS         WUUS01000001-WUUS01000021
WGS_SCAFLD  NZ_WUUS01000001-NZ_WUUS01000021
//
LOCUS       NZ_WSZK01000000      4069707 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halomarina oriensis strain JCM 16495, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WSZK00000000
VERSION     NZ_WSZK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13563881
            Assembly: GCF_009791395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina oriensis
  ORGANISM  Halomarina oriensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 4069707)
  AUTHORS   Pal,Y., Verma,A., Krishnamurthi,S. and Kumar,P.
  TITLE     Halocatena pleomorpha gen. nov. sp. nov., an extremely halophilic
            archaeon of family Halobacteriaceae isolated from saltpan soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4069707)
  AUTHORS   Pal,Y., Verma,A., Krishnamurthi,S. and Kumar,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2019) MTCC, CSIR-IMTECH, SECTOR-39A, Chandigarh,
            Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WSZK00000000.1.
            The Halomarina oriensis whole genome shotgun (WGS) project has the
            project accession NZ_WSZK00000000.  This version of the project
            (01) has the accession number NZ_WSZK01000000, and consists of
            sequences WSZK01000001-WSZK01000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from JCM16495.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-DEC-2019
            Assembly Method        :: CLC NGS Cell v. 20
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009791395.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:08:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,326
            CDSs (total)                      :: 4,274
            Genes (coding)                    :: 4,183
            CDSs (with protein)               :: 4,183
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 52 of 91
            Pseudo Genes (incomplete)         :: 45 of 91
            Pseudo Genes (internal stop)      :: 5 of 91
            Pseudo Genes (multiple problems)  :: 9 of 91
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4069707
                     /organism="Halomarina oriensis"
                     /mol_type="genomic DNA"
                     /strain="JCM 16495"
                     /isolation_source="water"
                     /type_material="type strain of Halomarina oriensis"
                     /db_xref="taxon:671145"
                     /geo_loc_name="Japan: Tokyo"
                     /lat_lon="33.882715 N 139.769672 E"
                     /collection_date="2011-01-01"
WGS         WSZK01000001-WSZK01000050
WGS_SCAFLD  NZ_WSZK01000001-NZ_WSZK01000050
//
LOCUS       NZ_WUUU01000000      3499479 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobacterium bonnevillei strain PCN9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WUUU00000000
VERSION     NZ_WUUU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13677126
            Assembly: GCF_009831555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium bonnevillei
  ORGANISM  Halobacterium bonnevillei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 3499479)
  AUTHORS   Myers,M.R. and King,G.M.
  TITLE     Isolation and characterization of three novel carbon
            monoxide-oxidizing members of Halobacteria from salione crusts and
            soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3499479)
  AUTHORS   King,G.M. and Myers,M.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2019) Biological Sciences, Louisiana State
            University, Department of Biological Sciences, Baton Rouge, LA
            70803, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WUUU00000000.1.
            The Halobacterium bonnevillei whole genome shotgun (WGS) project
            has the project accession NZ_WUUU00000000.  This version of the
            project (01) has the accession number NZ_WUUU01000000, and consists
            of sequences WUUU01000001-WUUU01000362.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from American Type Culture
            Collection TSD-126.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 05-SEP-2018
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 783.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009831555.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:26:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,914
            CDSs (total)                      :: 3,863
            Genes (coding)                    :: 3,465
            CDSs (with protein)               :: 3,465
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 398
            CDSs (without protein)            :: 398
            Pseudo Genes (ambiguous residues) :: 0 of 398
            Pseudo Genes (frameshifted)       :: 156 of 398
            Pseudo Genes (incomplete)         :: 256 of 398
            Pseudo Genes (internal stop)      :: 8 of 398
            Pseudo Genes (multiple problems)  :: 21 of 398
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499479
                     /organism="Halobacterium bonnevillei"
                     /mol_type="genomic DNA"
                     /strain="PCN9"
                     /isolation_source="salt crust"
                     /type_material="type strain of Halobacterium bonnevillei"
                     /db_xref="taxon:2692200"
                     /geo_loc_name="USA: Bonneville, Utah"
                     /lat_lon="40.757333 N 113.886417 W"
                     /collection_date="2016-07"
WGS         WUUU01000001-WUUU01000362
WGS_SCAFLD  NZ_WUUU01000001-NZ_WUUU01000362
//
LOCUS       NZ_CADBYU010000000   3579725 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: uncultured Methanobrevibacter sp. isolate RUG14427, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CADBYU000000000
VERSION     NZ_CADBYU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6152565
            Assembly: GCF_902799005.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobrevibacter sp. (bovine gut metagenome)
  ORGANISM  uncultured Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter; environmental samples.
REFERENCE   1  (bases 1 to 3579725)
  AUTHORS   Vasoya,D. and Watson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2020) THE ROSLIN INSTITUTE, Watson Group, The
            University of Edinburgh, Easter Bush Edinburgh EH25 9RG, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADBYU000000000.1.
            The uncultured Methanobrevibacter sp. whole genome shotgun (WGS)
            project has the project accession NZ_CADBYU000000000.  This version
            of the project (01) has the accession number NZ_CADBYU010000000,
            and consists of sequences CADBYU010000001-CADBYU010000302.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902799005.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:48:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,189
            CDSs (total)                      :: 3,154
            Genes (coding)                    :: 3,044
            CDSs (with protein)               :: 3,044
            Genes (RNA)                       :: 35
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 30
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 1 of 110
            Pseudo Genes (frameshifted)       :: 27 of 110
            Pseudo Genes (incomplete)         :: 83 of 110
            Pseudo Genes (internal stop)      :: 9 of 110
            Pseudo Genes (multiple problems)  :: 9 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3579725
                     /organism="uncultured Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RUG14427"
                     /isolation_source="cattle rumen"
                     /db_xref="taxon:253161"
                     /environmental_sample
                     /metagenome_source="bovine gut metagenome"
                     /metagenomic
WGS         CADBYU010000001-CADBYU010000302
WGS_SCAFLD  NZ_CADBYU010000001-NZ_CADBYU010000302
//
LOCUS       NZ_WMEO01000000      3379638 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum distributum strain 22517_05_Cabo, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WMEO00000000
VERSION     NZ_WMEO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13191880
            Assembly: GCF_009856205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum distributum
  ORGANISM  Halorubrum distributum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            Halorubrum distributum group.
REFERENCE   1  (bases 1 to 3379638)
  AUTHORS   Furrow,R.E.
  TITLE     Genome sequences of 17 halophilic strains isolated from different
            environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3379638)
  AUTHORS   Faciotti,M.T. and Furrow,R.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2019) GBSF, UC Davis, One Shields Avenue, Davis,
            CA 95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WMEO00000000.1.
            The Halorubrum distributum whole genome shotgun (WGS) project has
            the project accession NZ_WMEO00000000.  This version of the project
            (01) has the accession number NZ_WMEO01000000, and consists of
            sequences WMEO01000001-WMEO01000075.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 122.584x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009856205.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:27:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,404
            CDSs (total)                      :: 3,338
            Genes (coding)                    :: 3,279
            CDSs (with protein)               :: 3,279
            Genes (RNA)                       :: 66
            rRNAs                             :: 3, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 6, 6 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 18 of 59
            Pseudo Genes (incomplete)         :: 45 of 59
            Pseudo Genes (internal stop)      :: 11 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379638
                     /organism="Halorubrum distributum"
                     /mol_type="genomic DNA"
                     /strain="22517_05_Cabo"
                     /isolation_source="Cabo salt"
                     /db_xref="taxon:29283"
                     /geo_loc_name="Puerto Rico: Cabo Rojo Salterns"
WGS         WMEO01000001-WMEO01000075
WGS_SCAFLD  NZ_WMEO01000001-NZ_WMEO01000075
//
LOCUS       NZ_WUUT01000000      3245916 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halovenus carboxidivorans strain WSH3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WUUT00000000
VERSION     NZ_WUUT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13676160
            Assembly: GCF_009831575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus carboxidivorans
  ORGANISM  Halovenus carboxidivorans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3245916)
  AUTHORS   Myers,M.R. and King,G.M.
  TITLE     Isolation and characterization of three novel carbon
            monoxide-oxidizing members of Halobacteria from salione crusts and
            soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3245916)
  AUTHORS   King,G.M. and Myers,M.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-DEC-2019) Biological Sciences, Louisiana State
            University, Department of Biological Sciences, Baton Rouge, LA
            70803, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WUUT00000000.1.
            The Halovenus carboxidivorans whole genome shotgun (WGS) project
            has the project accession NZ_WUUT00000000.  This version of the
            project (01) has the accession number NZ_WUUT01000000, and consists
            of sequences WUUT01000001-WUUT01000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from American Type Culture
            Collection TSD-128.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-MAY-2017
            Assembly Method        :: A5-miseq v. MacOS_20140604
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 263.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009831575.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:28:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,331
            CDSs (total)                      :: 3,280
            Genes (coding)                    :: 3,250
            CDSs (with protein)               :: 3,250
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 5 of 30
            Pseudo Genes (incomplete)         :: 25 of 30
            Pseudo Genes (internal stop)      :: 2 of 30
            Pseudo Genes (multiple problems)  :: 2 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3245916
                     /organism="Halovenus carboxidivorans"
                     /mol_type="genomic DNA"
                     /strain="WSH3"
                     /isolation_source="hypersaline soil"
                     /type_material="type strain of Halovenus carboxidivorans"
                     /db_xref="taxon:2692199"
                     /geo_loc_name="USA: Wendover, Utah"
                     /lat_lon="40.428661 N 114.015389 W"
                     /collection_date="2016-07"
WGS         WUUT01000001-WUUT01000010
WGS_SCAFLD  NZ_WUUT01000001-NZ_WUUT01000010
//
LOCUS       NZ_WPCD01000000      4095662 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halogeometricum sp. CBA1124, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WPCD00000000
VERSION     NZ_WPCD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13266923
            Assembly: GCF_009741955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum sp. CBA1124
  ORGANISM  Halogeometricum sp. CBA1124
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1  (bases 1 to 4095662)
  AUTHORS   Roh,S.W.
  TITLE     Genomic analysis of Halogeometricum sp. CBA1124
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4095662)
  AUTHORS   Roh,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Microbiology and Functionality Research
            Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju,
            Gwangju 61755, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WPCD00000000.1.
            The Halogeometricum sp. CBA1124 whole genome shotgun (WGS) project
            has the project accession NZ_WPCD00000000.  This version of the
            project (01) has the accession number NZ_WPCD01000000, and consists
            of sequences WPCD01000001-WPCD01000385.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomics Workbench v. 6.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 333.44x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009741955.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:27:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,584
            CDSs (total)                      :: 4,528
            Genes (coding)                    :: 3,527
            CDSs (with protein)               :: 3,527
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1,001
            CDSs (without protein)            :: 1,001
            Pseudo Genes (ambiguous residues) :: 0 of 1,001
            Pseudo Genes (frameshifted)       :: 772 of 1,001
            Pseudo Genes (incomplete)         :: 279 of 1,001
            Pseudo Genes (internal stop)      :: 4 of 1,001
            Pseudo Genes (multiple problems)  :: 54 of 1,001
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4095662
                     /organism="Halogeometricum sp. CBA1124"
                     /mol_type="genomic DNA"
                     /strain="CBA1124"
                     /isolation_source="solar salt"
                     /db_xref="taxon:2668071"
                     /geo_loc_name="South Korea"
WGS         WPCD01000001-WPCD01000385
WGS_SCAFLD  NZ_WPCD01000001-NZ_WPCD01000385
//
LOCUS       NZ_WMFC01000000      3207930 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum distributum strain 22502_06_Cabo, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WMFC00000000
VERSION     NZ_WMFC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13191865
            Assembly: GCF_009856455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum distributum
  ORGANISM  Halorubrum distributum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            Halorubrum distributum group.
REFERENCE   1  (bases 1 to 3207930)
  AUTHORS   Furrow,R.E.
  TITLE     Genome sequences of 17 halophilic strains isolated from different
            environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3207930)
  AUTHORS   Faciotti,M.T. and Furrow,R.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2019) GBSF, UC Davis, One Shields Avenue, Davis,
            CA 95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WMFC00000000.1.
            The Halorubrum distributum whole genome shotgun (WGS) project has
            the project accession NZ_WMFC00000000.  This version of the project
            (01) has the accession number NZ_WMFC01000000, and consists of
            sequences WMFC01000001-WMFC01000067.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 156.749x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009856455.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:32:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,222
            CDSs (total)                      :: 3,165
            Genes (coding)                    :: 3,124
            CDSs (with protein)               :: 3,124
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 6 of 41
            Pseudo Genes (incomplete)         :: 38 of 41
            Pseudo Genes (internal stop)      :: 5 of 41
            Pseudo Genes (multiple problems)  :: 7 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3207930
                     /organism="Halorubrum distributum"
                     /mol_type="genomic DNA"
                     /strain="22502_06_Cabo"
                     /isolation_source="Cabo salt"
                     /db_xref="taxon:29283"
                     /geo_loc_name="Puerto Rico: Cabo Rojo Salterns"
WGS         WMFC01000001-WMFC01000067
WGS_SCAFLD  NZ_WMFC01000001-NZ_WMFC01000067
//
LOCUS       NZ_RXOB02000000      3778909 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus amylolyticus strain YC93, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RXOB00000000
VERSION     NZ_RXOB00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10601653
            Assembly: GCF_004143485.2
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus amylolyticus
  ORGANISM  Halorussus amylolyticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 3778909)
  AUTHORS   Cui,H.-L. and Han,D.
  TITLE     Genome sequence of Halorussus amylolyticus YC93, isolated from an
            inland salt lake
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3778909)
  AUTHORS   Cui,H.-L. and Han,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
REFERENCE   3  (bases 1 to 3778909)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2018) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RXOB00000000.2.
            
            On Feb 7, 2020 this sequence version replaced NZ_RXOB00000000.1.
            The Halorussus amylolyticus whole genome shotgun (WGS) project has
            the project accession NZ_RXOB00000000.  This version of the project
            (02) has the accession number NZ_RXOB02000000, and consists of
            sequences RXOB02000001-RXOB02000055.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2019
            Assembly Method        :: SOAPdenovo v. Apr-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004143485.2-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:38:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,911
            CDSs (total)                      :: 3,850
            Genes (coding)                    :: 3,791
            CDSs (with protein)               :: 3,791
            Genes (RNA)                       :: 61
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 12 of 59
            Pseudo Genes (incomplete)         :: 50 of 59
            Pseudo Genes (internal stop)      :: 5 of 59
            Pseudo Genes (multiple problems)  :: 6 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3778909
                     /organism="Halorussus amylolyticus"
                     /mol_type="genomic DNA"
                     /strain="YC93"
                     /isolation_source="inland salt lake"
                     /type_material="type strain of Halorussus amylolyticus"
                     /db_xref="taxon:1126242"
                     /geo_loc_name="China: Shanxi Province, Yuncheng Salt Lake"
                     /collection_date="2012"
WGS         RXOB02000001-RXOB02000055
WGS_SCAFLD  NZ_ML974130-NZ_ML974141
WGS_SCAFLD  NZ_RXOB02000022
WGS_SCAFLD  NZ_RXOB02000032
WGS_SCAFLD  NZ_RXOB02000046
WGS_SCAFLD  NZ_RXOB02000049
WGS_SCAFLD  NZ_RXOB02000052-NZ_RXOB02000055
//
LOCUS       NZ_VSLZ01000000      4408556 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus sp. MSC15.2, whole genome shotgun sequencing project.
ACCESSION   NZ_VSLZ00000000
VERSION     NZ_VSLZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12606368
            Assembly: GCF_010747475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus sp. MSC15.2
  ORGANISM  Halorussus sp. MSC15.2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4408556)
  AUTHORS   Pittrich,D.A., Tafer,H., Lopandic,K., Sterflinger-Gleixner,K.,
            Houghton,K.M., Stott,M.B., Schmidt,H.K. and Carere,C.R.
  TITLE     The genome of Halorussus allagis sp. nov., a pleomorphic, extremely
            halophilic archaeon isolated from a brine pond in Rub Al-khali
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4408556)
  AUTHORS   Pittrich,D.A., Tafer,H., Lopandic,K., Sterflinger-Gleixner,K.,
            Houghton,K.M., Stott,M.B., Schmidt,H.K. and Carere,C.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2020) School of Biological Sciences, University
            of Canterbury, 20 Kirkwood Ave, Upper Riccarton, Christchurch 8041,
            New Zealand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSLZ00000000.1.
            The Halorussus sp. MSC15.2 whole genome shotgun (WGS) project has
            the project accession NZ_VSLZ00000000.  This version of the project
            (01) has the accession number NZ_VSLZ01000000, and consists of
            sequences VSLZ01000001-VSLZ01000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Matthew Stott SBS University
            of Canterbury.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Newbler v. 2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010747475.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:43:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,496
            CDSs (total)                      :: 4,434
            Genes (coding)                    :: 4,241
            CDSs (with protein)               :: 4,241
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 3, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 6 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 193
            CDSs (without protein)            :: 193
            Pseudo Genes (ambiguous residues) :: 0 of 193
            Pseudo Genes (frameshifted)       :: 160 of 193
            Pseudo Genes (incomplete)         :: 36 of 193
            Pseudo Genes (internal stop)      :: 5 of 193
            Pseudo Genes (multiple problems)  :: 8 of 193
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4408556
                     /organism="Halorussus sp. MSC15.2"
                     /mol_type="genomic DNA"
                     /strain="MSC15.2"
                     /isolation_source="brine pond sediments"
                     /culture_collection="ICMP:21888"
                     /db_xref="taxon:2283638"
                     /lat_lon="22.36 N 54.21 E"
                     /collection_date="2014-11"
                     /collected_by="Howard Schmidt"
WGS         VSLZ01000001-VSLZ01000025
WGS_SCAFLD  NZ_VSLZ01000001-NZ_VSLZ01000025
//
LOCUS       NZ_SBIS02000000      4753187 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorussus salinus strain YJ-37-H, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SBIS00000000
VERSION     NZ_SBIS00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10721319
            Assembly: GCF_004765815.2
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus salinus
  ORGANISM  Halorussus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4753187)
  AUTHORS   Cui,H.-L. and Han,D.
  TITLE     Genome sequence of Halorussus salinus YJ-37-H isolated from a
            marine solar saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4753187)
  AUTHORS   Cui,H.-L. and Han,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
REFERENCE   3  (bases 1 to 4753187)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2019) School of Food & Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SBIS00000000.2.
            
            On Feb 7, 2020 this sequence version replaced NZ_SBIS00000000.1.
            The Halorussus salinus whole genome shotgun (WGS) project has the
            project accession NZ_SBIS00000000.  This version of the project
            (02) has the accession number NZ_SBIS02000000, and consists of
            sequences SBIS02000001-SBIS02000016.
            Bacteria and source DNA available from School of Food & Biological
            Engineering, Jiangsu University.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2019
            Assembly Method        :: SOAPdenovo v. Apr-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004765815.2-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:43:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,758
            CDSs (total)                      :: 4,705
            Genes (coding)                    :: 4,661
            CDSs (with protein)               :: 4,661
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 8 of 44
            Pseudo Genes (incomplete)         :: 39 of 44
            Pseudo Genes (internal stop)      :: 6 of 44
            Pseudo Genes (multiple problems)  :: 6 of 44
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4753187
                     /organism="Halorussus salinus"
                     /mol_type="genomic DNA"
                     /strain="YJ-37-H"
                     /isolation_source="a marine solar saltern"
                     /type_material="type strain of Halorussus salinus"
                     /db_xref="taxon:1364935"
                     /geo_loc_name="China: Yangjiang marine solar saltern,
                     Guangdong Province"
                     /collection_date="2012"
WGS         SBIS02000001-SBIS02000016
WGS_SCAFLD  NZ_ML974127-NZ_ML974129
WGS_SCAFLD  NZ_SBIS02000007-NZ_SBIS02000008
WGS_SCAFLD  NZ_SBIS02000011-NZ_SBIS02000016
//
LOCUS       NZ_WRXL01000000      3787729 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula salina strain YGHS18, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WRXL00000000
VERSION     NZ_WRXL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13386515
            Assembly: GCF_010119195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula salina
  ORGANISM  Haloarcula salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3787729)
  AUTHORS   Zhang,W.J. and Cui,H.L.
  TITLE     Halomicroarcula salina sp. nov., isolated from a marine solar
            saltern
  JOURNAL   Int J Syst Evol Microbiol 65 (Pt 5), 1628-1633 (2015)
   PUBMED   25721722
REFERENCE   2  (bases 1 to 3787729)
  AUTHORS   Zhang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2019) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WRXL00000000.1.
            The Haloarcula salina whole genome shotgun (WGS) project has the
            project accession NZ_WRXL00000000.  This version of the project
            (01) has the accession number NZ_WRXL01000000, and consists of
            sequences WRXL01000001-WRXL01000014.
            Bacteria and source DNA available from solar saltern.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010119195.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:42:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,870
            CDSs (total)                      :: 3,820
            Genes (coding)                    :: 3,795
            CDSs (with protein)               :: 3,795
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 11 of 25
            Pseudo Genes (incomplete)         :: 16 of 25
            Pseudo Genes (internal stop)      :: 5 of 25
            Pseudo Genes (multiple problems)  :: 6 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3787729
                     /organism="Haloarcula salina"
                     /mol_type="genomic DNA"
                     /strain="YGHS18"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halomicroarcula salina"
                     /db_xref="taxon:1429914"
                     /geo_loc_name="China: Hainan"
                     /collected_by="Henglin Cui"
WGS         WRXL01000001-WRXL01000014
WGS_SCAFLD  NZ_WRXL01000001-NZ_WRXL01000014
//
LOCUS       NZ_CAACAE010000000   1722401 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter smithii isolate PRJEB30652, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAACAE000000000
VERSION     NZ_CAACAE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5208282
            Assembly: GCF_900654205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  CONSRTM   IHU Genomes
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2019) URMITE, IHU - Mediterranee Infection, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAACAE000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAACAE000000000.  This version of the
            project (01) has the accession number NZ_CAACAE010000000, and
            consists of sequences CAACAE010000001-CAACAE010000016.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900654205.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:56:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,711
            CDSs (total)                      :: 1,668
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 12 of 21
            Pseudo Genes (incomplete)         :: 8 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722401
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="PRJEB30652"
                     /isolation_source="Blood"
                     /db_xref="taxon:2173"
WGS         CAACAE010000001-CAACAE010000016
WGS_SCAFLD  NZ_LR136944-NZ_LR136957
//
LOCUS       NZ_SNUJ01000000      2002356 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. LS1, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUJ00000000
VERSION     NZ_SNUJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963477
            Assembly: GCF_012027395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. LS1
  ORGANISM  Thermococcus sp. LS1
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2002356)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2002356)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUJ00000000.1.
            The Thermococcus sp. LS1 whole genome shotgun (WGS) project has the
            project accession NZ_SNUJ00000000.  This version of the project
            (01) has the accession number NZ_SNUJ01000000, and consists of
            sequences SNUJ01000001-SNUJ01000025.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027395.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:55:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,239
            CDSs (total)                      :: 2,190
            Genes (coding)                    :: 2,164
            CDSs (with protein)               :: 2,164
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 9 of 26
            Pseudo Genes (incomplete)         :: 18 of 26
            Pseudo Genes (internal stop)      :: 1 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002356
                     /organism="Thermococcus sp. LS1"
                     /mol_type="genomic DNA"
                     /strain="LS1"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638259"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUJ01000001-SNUJ01000025
WGS_SCAFLD  NZ_SNUJ01000001-NZ_SNUJ01000025
//
LOCUS       NZ_SNUD01000000      1931684 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. MV11, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUD00000000
VERSION     NZ_SNUD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963483
            Assembly: GCF_012027285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. MV11
  ORGANISM  Thermococcus sp. MV11
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1931684)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1931684)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUD00000000.1.
            The Thermococcus sp. MV11 whole genome shotgun (WGS) project has
            the project accession NZ_SNUD00000000.  This version of the project
            (01) has the accession number NZ_SNUD01000000, and consists of
            sequences SNUD01000001-SNUD01000015.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 19x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027285.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:58:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,134
            CDSs (total)                      :: 2,083
            Genes (coding)                    :: 2,058
            CDSs (with protein)               :: 2,058
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 18 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931684
                     /organism="Thermococcus sp. MV11"
                     /mol_type="genomic DNA"
                     /strain="MV11"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638267"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUD01000001-SNUD01000015
WGS_SCAFLD  NZ_SNUD01000001-NZ_SNUD01000015
//
LOCUS       NZ_SNUE01000000      1982688 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. MV5, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUE00000000
VERSION     NZ_SNUE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963482
            Assembly: GCF_012027425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. MV5
  ORGANISM  Thermococcus sp. MV5
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1982688)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1982688)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUE00000000.1.
            The Thermococcus sp. MV5 whole genome shotgun (WGS) project has the
            project accession NZ_SNUE00000000.  This version of the project
            (01) has the accession number NZ_SNUE01000000, and consists of
            sequences SNUE01000001-SNUE01000101.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 105x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027425.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:55:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,283
            CDSs (total)                      :: 2,230
            Genes (coding)                    :: 2,166
            CDSs (with protein)               :: 2,166
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 14 of 64
            Pseudo Genes (incomplete)         :: 56 of 64
            Pseudo Genes (internal stop)      :: 1 of 64
            Pseudo Genes (multiple problems)  :: 7 of 64
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982688
                     /organism="Thermococcus sp. MV5"
                     /mol_type="genomic DNA"
                     /strain="MV5"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638272"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUE01000001-SNUE01000101
WGS_SCAFLD  NZ_SNUE01000001-NZ_SNUE01000101
//
LOCUS       NZ_SNUF01000000      2023001 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. MAR1, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUF00000000
VERSION     NZ_SNUF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963481
            Assembly: GCF_012027305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. MAR1
  ORGANISM  Thermococcus sp. MAR1
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2023001)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2023001)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUF00000000.1.
            The Thermococcus sp. MAR1 whole genome shotgun (WGS) project has
            the project accession NZ_SNUF00000000.  This version of the project
            (01) has the accession number NZ_SNUF01000000, and consists of
            sequences SNUF01000001-SNUF01000053.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 45x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027305.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:56:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,311
            CDSs (total)                      :: 2,258
            Genes (coding)                    :: 2,238
            CDSs (with protein)               :: 2,238
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 4 of 20
            Pseudo Genes (incomplete)         :: 16 of 20
            Pseudo Genes (internal stop)      :: 0 of 20
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023001
                     /organism="Thermococcus sp. MAR1"
                     /mol_type="genomic DNA"
                     /strain="MAR1"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638263"
                     /geo_loc_name="Atlantic Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUF01000001-SNUF01000053
WGS_SCAFLD  NZ_SNUF01000001-NZ_SNUF01000053
//
LOCUS       NZ_SNUG01000000      2277370 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. M39, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUG00000000
VERSION     NZ_SNUG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963480
            Assembly: GCF_012027325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. M39
  ORGANISM  Thermococcus sp. M39
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2277370)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2277370)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUG00000000.1.
            The Thermococcus sp. M39 whole genome shotgun (WGS) project has the
            project accession NZ_SNUG00000000.  This version of the project
            (01) has the accession number NZ_SNUG01000000, and consists of
            sequences SNUG01000001-SNUG01000054.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 96x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027325.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:55:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,549
            CDSs (total)                      :: 2,497
            Genes (coding)                    :: 2,445
            CDSs (with protein)               :: 2,445
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 17 of 52
            Pseudo Genes (incomplete)         :: 38 of 52
            Pseudo Genes (internal stop)      :: 2 of 52
            Pseudo Genes (multiple problems)  :: 5 of 52
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277370
                     /organism="Thermococcus sp. M39"
                     /mol_type="genomic DNA"
                     /strain="M39"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638262"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUG01000001-SNUG01000054
WGS_SCAFLD  NZ_SNUG01000001-NZ_SNUG01000054
//
LOCUS       NZ_SNUU01000000      1991402 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. 18S1, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUU00000000
VERSION     NZ_SNUU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963463
            Assembly: GCF_012027645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. 18S1
  ORGANISM  Thermococcus sp. 18S1
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1991402)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1991402)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUU00000000.1.
            The Thermococcus sp. 18S1 whole genome shotgun (WGS) project has
            the project accession NZ_SNUU00000000.  This version of the project
            (01) has the accession number NZ_SNUU01000000, and consists of
            sequences SNUU01000001-SNUU01000004.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 34x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027645.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:57:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,142
            CDSs (total)                      :: 2,090
            Genes (coding)                    :: 2,089
            CDSs (with protein)               :: 2,089
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1991402
                     /organism="Thermococcus sp. 18S1"
                     /mol_type="genomic DNA"
                     /strain="18S1"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638210"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUU01000001-SNUU01000004
WGS_SCAFLD  NZ_SNUU01000001-NZ_SNUU01000004
//
LOCUS       NZ_JAANTI010000000   3161493 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halolamina sp. R1-12, whole genome shotgun sequencing project.
ACCESSION   NZ_JAANTI000000000
VERSION     NZ_JAANTI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14309520
            Assembly: GCF_011627345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina sp. R1-12
  ORGANISM  Halolamina sp. R1-12
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 3161493)
  AUTHORS   Cui,H.L., Gao,X., Yang,X. and Xu,X.W.
  TITLE     Halolamina pelagica gen. nov., sp. nov., a new member of the family
            Halobacteriaceae
  JOURNAL   Int J Syst Evol Microbiol 61 (Pt 7), 1617-1621 (2011)
   PUBMED   20693359
REFERENCE   2  (bases 1 to 3161493)
  AUTHORS   Cui,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2020) Ecology, UJS, Xuefu Street, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAANTI000000000.1.
            The Halolamina sp. R1-12 whole genome shotgun (WGS) project has the
            project accession NZ_JAANTI000000000.  This version of the project
            (01) has the accession number NZ_JAANTI010000000, and consists of
            sequences JAANTI010000001-JAANTI010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011627345.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:00:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,303
            CDSs (total)                      :: 3,252
            Genes (coding)                    :: 3,182
            CDSs (with protein)               :: 3,182
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 20 of 70
            Pseudo Genes (incomplete)         :: 52 of 70
            Pseudo Genes (internal stop)      :: 6 of 70
            Pseudo Genes (multiple problems)  :: 8 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3161493
                     /organism="Halolamina sp. R1-12"
                     /mol_type="genomic DNA"
                     /strain="R1-12"
                     /isolation_source="salted radish"
                     /db_xref="taxon:2715752"
                     /geo_loc_name="China"
                     /collection_date="2018"
WGS         JAANTI010000001-JAANTI010000024
WGS_SCAFLD  NZ_JAANTI010000001-NZ_JAANTI010000024
//
LOCUS       NZ_JAAKXY010000000   4562990 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronolimnobius sp. AArcel1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAKXY000000000
VERSION     NZ_JAAKXY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14166887
            Assembly: GCF_011043775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronolimnobius sp. AArcel1
  ORGANISM  Natronolimnobius sp. AArcel1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronolimnobius.
REFERENCE   1  (bases 1 to 4562990)
  AUTHORS   Toshchakov,S.V. and Samarov,N.I.
  TITLE     Whole Genome Sequencing of the Natronolimnobius sp. AArcel1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4562990)
  AUTHORS   Toshchakov,S.V. and Samarov,N.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2020) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-Letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAKXY000000000.1.
            The Natronolimnobius sp. AArcel1 whole genome shotgun (WGS) project
            has the project accession NZ_JAAKXY000000000.  This version of the
            project (01) has the accession number NZ_JAAKXY010000000, and
            consists of sequences JAAKXY010000001-JAAKXY010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-JUN-2019
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011043775.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:53:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,460
            CDSs (total)                      :: 4,404
            Genes (coding)                    :: 4,299
            CDSs (with protein)               :: 4,299
            Genes (RNA)                       :: 56
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 40 of 105
            Pseudo Genes (incomplete)         :: 77 of 105
            Pseudo Genes (internal stop)      :: 19 of 105
            Pseudo Genes (multiple problems)  :: 24 of 105
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4562990
                     /organism="Natronolimnobius sp. AArcel1"
                     /mol_type="genomic DNA"
                     /strain="AArcel1"
                     /isolation_source="hypersaline chloride-sulfate lake"
                     /db_xref="taxon:1679093"
                     /geo_loc_name="Russia: Kulunda"
                     /collection_date="2013-06-30"
WGS         JAAKXY010000001-JAAKXY010000022
WGS_SCAFLD  NZ_JAAKXY010000001-NZ_JAAKXY010000022
//
LOCUS       NZ_WOYL01000000      2370536 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanoculleus sp. isolate WOFA03, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WOYL00000000
VERSION     NZ_WOYL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13475794
            Assembly: GCF_011620795.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (oil field metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2370536)
  AUTHORS   Wemheuer,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Institut fuer Mikrobiologie und Genetik (AG
            Daniel), Genomic and Applied Microbiology & Goettingen Genomics
            Laboratory, Grisebachstr. 8, Goettingen 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WOYL00000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_WOYL00000000.  This version of the project
            (01) has the accession number NZ_WOYL01000000, and consists of
            sequences WOYL01000001-WOYL01000219.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2019
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 44.1148901992134x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011620795.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:58:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,480
            CDSs (total)                      :: 2,435
            Genes (coding)                    :: 2,380
            CDSs (with protein)               :: 2,380
            Genes (RNA)                       :: 45
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 7 of 55
            Pseudo Genes (incomplete)         :: 49 of 55
            Pseudo Genes (internal stop)      :: 1 of 55
            Pseudo Genes (multiple problems)  :: 2 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370536
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="WOFA03"
                     /isolation_source="oil-contaminated soil"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="Germany: Wietze"
                     /lat_lon="52.659353 N 9.832481 E"
                     /collection_date="2016-10-18"
                     /metagenome_source="oil field metagenome"
                     /metagenomic
WGS         WOYL01000001-WOYL01000219
WGS_SCAFLD  NZ_WOYL01000001-NZ_WOYL01000219
//
LOCUS       NZ_JAANTG010000000   4111827 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. R1-2, whole genome shotgun sequencing project.
ACCESSION   NZ_JAANTG000000000
VERSION     NZ_JAANTG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14309517
            Assembly: GCF_011627385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. R1-2
  ORGANISM  Haloarcula sp. R1-2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4111827)
  AUTHORS   Namwong,S., Tanasupawat,S., Kudo,T. and Itoh,T.
  TITLE     Haloarcula salaria sp. nov. and Haloarcula tradensis sp. nov.,
            isolated from salt in Thai fish sauce
  JOURNAL   Int J Syst Evol Microbiol 61 (Pt 2), 231-236 (2011)
   PUBMED   20207809
REFERENCE   2  (bases 1 to 4111827)
  AUTHORS   Namwong,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2020) Ecology, UJS, Xuefu Street, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAANTG000000000.1.
            The Haloarcula sp. R1-2 whole genome shotgun (WGS) project has the
            project accession NZ_JAANTG000000000.  This version of the project
            (01) has the accession number NZ_JAANTG010000000, and consists of
            sequences JAANTG010000001-JAANTG010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011627385.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:03:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,145
            CDSs (total)                      :: 4,086
            Genes (coding)                    :: 4,034
            CDSs (with protein)               :: 4,034
            Genes (RNA)                       :: 59
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 23S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 16 of 52
            Pseudo Genes (incomplete)         :: 39 of 52
            Pseudo Genes (internal stop)      :: 11 of 52
            Pseudo Genes (multiple problems)  :: 12 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111827
                     /organism="Haloarcula sp. R1-2"
                     /mol_type="genomic DNA"
                     /strain="R1-2"
                     /isolation_source="salted radish"
                     /db_xref="taxon:2715750"
                     /geo_loc_name="China"
                     /collection_date="2018"
WGS         JAANTG010000001-JAANTG010000012
WGS_SCAFLD  NZ_JAANTG010000001-NZ_JAANTG010000012
//
LOCUS       NZ_SNUL01000000      2014437 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. GR7, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUL00000000
VERSION     NZ_SNUL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963475
            Assembly: GCF_012027455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. GR7
  ORGANISM  Thermococcus sp. GR7
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2014437)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2014437)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUL00000000.1.
            The Thermococcus sp. GR7 whole genome shotgun (WGS) project has the
            project accession NZ_SNUL00000000.  This version of the project
            (01) has the accession number NZ_SNUL01000000, and consists of
            sequences SNUL01000001-SNUL01000198.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 62x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027455.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:56:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,336
            CDSs (total)                      :: 2,283
            Genes (coding)                    :: 2,197
            CDSs (with protein)               :: 2,197
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 8 of 86
            Pseudo Genes (incomplete)         :: 77 of 86
            Pseudo Genes (internal stop)      :: 3 of 86
            Pseudo Genes (multiple problems)  :: 2 of 86
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014437
                     /organism="Thermococcus sp. GR7"
                     /mol_type="genomic DNA"
                     /strain="GR7"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638257"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUL01000001-SNUL01000198
WGS_SCAFLD  NZ_SNUL01000001-NZ_SNUL01000198
//
LOCUS       NZ_RCMC01000000      1818645 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Candidatus Nitrosotalea sp. FS, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RCMC00000000
VERSION     NZ_RCMC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09786339
            Assembly: GCF_011319475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosotalea sp. FS
  ORGANISM  Candidatus Nitrosotalea sp. FS
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosotaleales;
            Nitrosotaleaceae; Nitrosotalea.
REFERENCE   1  (bases 1 to 1818645)
  AUTHORS   Wang,B., Qin,W., Ren,Y., Zhou,X., Jung,M.Y., Han,P.,
            Eloe-Fadrosh,E.A., Li,M., Zheng,Y., Lu,L., Yan,X., Ji,J., Liu,Y.,
            Liu,L., Heiner,C., Hall,R., Martens-Habbena,W., Herbold,C.W.,
            Rhee,S.K., Bartlett,D.H., Huang,L., Ingalls,A.E., Wagner,M.,
            Stahl,D.A. and Jia,Z.
  TITLE     Expansion of Thaumarchaeota habitat range is correlated with
            horizontal transfer of ATPase operons
  JOURNAL   ISME J 13 (12), 3067-3079 (2019)
   PUBMED   31462715
REFERENCE   2  (bases 1 to 1818645)
  AUTHORS   Wang,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-OCT-2018) State Key Laboratory of Soil and
            Sustainable Agriculture, Institute of Soil Science, Chinese Academy
            of Sciences, No. 71 Beijing-East Road, Nanjing, Jiangsu 210008,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RCMC00000000.1.
            The Candidatus Nitrosotalea sp. FS whole genome shotgun (WGS)
            project has the project accession NZ_RCMC00000000.  This version of
            the project (01) has the accession number NZ_RCMC01000000, and
            consists of sequences RCMC01000001-RCMC01000312.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-JUN-2012
            Assembly Method        :: Velvet v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011319475.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:10:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,416
            CDSs (total)                      :: 2,374
            Genes (coding)                    :: 1,800
            CDSs (with protein)               :: 1,800
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 574
            CDSs (without protein)            :: 574
            Pseudo Genes (ambiguous residues) :: 0 of 574
            Pseudo Genes (frameshifted)       :: 61 of 574
            Pseudo Genes (incomplete)         :: 536 of 574
            Pseudo Genes (internal stop)      :: 3 of 574
            Pseudo Genes (multiple problems)  :: 26 of 574
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818645
                     /organism="Candidatus Nitrosotalea sp. FS"
                     /mol_type="genomic DNA"
                     /strain="FS"
                     /isolation_source="acidic forest soil"
                     /db_xref="taxon:2341021"
                     /geo_loc_name="China: Zhejiang"
                     /collection_date="2011-08-20"
WGS         RCMC01000001-RCMC01000312
WGS_SCAFLD  NZ_RCMC01000001-NZ_RCMC01000312
//
LOCUS       NZ_CAAKMW010000000   1712416 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobrevibacter smithii isolate PRJEB32190, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAAKMW000000000
VERSION     NZ_CAAKMW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5568008
            Assembly: GCF_901111125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  CONSRTM   IHU Genomes
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2019) URMITE, IHU - Mediterranee Infection, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAAKMW000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAAKMW000000000.  This version of the
            project (01) has the accession number NZ_CAAKMW010000000, and
            consists of sequences CAAKMW010000001-CAAKMW010000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_901111125.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:07:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,707
            CDSs (total)                      :: 1,664
            Genes (coding)                    :: 1,642
            CDSs (with protein)               :: 1,642
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 12 of 22
            Pseudo Genes (incomplete)         :: 9 of 22
            Pseudo Genes (internal stop)      :: 4 of 22
            Pseudo Genes (multiple problems)  :: 2 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712416
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="PRJEB32190"
                     /isolation_source="Blood"
                     /db_xref="taxon:2173"
WGS         CAAKMW010000001-CAAKMW010000027
WGS_SCAFLD  NZ_CAAKMW010000001-NZ_CAAKMW010000027
//
LOCUS       NZ_JAAOIR010000000   3764446 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubellus sp. JP-L1, whole genome shotgun sequencing project.
ACCESSION   NZ_JAAOIR000000000
VERSION     NZ_JAAOIR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14309521
            Assembly: GCF_011440375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubellus sp. JP-L1
  ORGANISM  Halorubellus sp. JP-L1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Halorubellus.
REFERENCE   1  (bases 1 to 3764446)
  AUTHORS   Wang,Z., Xu,J.Q., Xu,W.M., Li,Y., Zhou,Y., Lu,Z.Z., Hou,J., Zhu,L.
            and Cui,H.L.
  TITLE     Salinigranum salinum sp. nov., isolated from a marine solar saltern
  JOURNAL   Int J Syst Evol Microbiol 66 (8), 3017-3021 (2016)
   PUBMED   27151192
REFERENCE   2  (bases 1 to 3764446)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2020) School of Agricultural Equipment
            Engineering, Jiangsu University, Xuefu Road, Zhenjiang, Jiangsu
            212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAOIR000000000.1.
            The Halorubellus sp. JP-L1 whole genome shotgun (WGS) project has
            the project accession NZ_JAAOIR000000000.  This version of the
            project (01) has the accession number NZ_JAAOIR010000000, and
            consists of sequences JAAOIR010000001-JAAOIR010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011440375.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:07:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,727
            CDSs (total)                      :: 3,672
            Genes (coding)                    :: 3,646
            CDSs (with protein)               :: 3,646
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 5 of 26
            Pseudo Genes (incomplete)         :: 22 of 26
            Pseudo Genes (internal stop)      :: 5 of 26
            Pseudo Genes (multiple problems)  :: 5 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3764446
                     /organism="Halorubellus sp. JP-L1"
                     /mol_type="genomic DNA"
                     /strain="JP-L1"
                     /isolation_source="soil"
                     /db_xref="taxon:2715753"
                     /geo_loc_name="China: Anda"
                     /lat_lon="46.27 N 125.22 E"
                     /collection_date="2015-05"
WGS         JAAOIR010000001-JAAOIR010000005
WGS_SCAFLD  NZ_JAAOIR010000001-NZ_JAAOIR010000005
//
LOCUS       NZ_DUKV01000000      1926086 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanocalculus sp. isolate UBA9912, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DUKV00000000
VERSION     NZ_DUKV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13193075
            Sequence Read Archive: SRR1977249
            Assembly: GCF_013329165.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanocalculus sp. (oil reservoir metagenome)
  ORGANISM  Methanocalculus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 1926086)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 1926086)
  AUTHORS   Rinke,C., Parks,D.H. and Hugenholtz,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DUKV00000000.1.
            The Methanocalculus sp. whole genome shotgun (WGS) project has the
            project accession NZ_DUKV00000000.  This version of the project
            (01) has the accession number NZ_DUKV01000000, and consists of
            sequences DUKV01000001-DUKV01000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013329165.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:07:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,144
            CDSs (total)                      :: 2,102
            Genes (coding)                    :: 2,071
            CDSs (with protein)               :: 2,071
            Genes (RNA)                       :: 42
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 27 of 31
            Pseudo Genes (internal stop)      :: 1 of 31
            Pseudo Genes (multiple problems)  :: 1 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926086
                     /organism="Methanocalculus sp."
                     /mol_type="genomic DNA"
                     /isolate="UBA9912"
                     /isolation_source="oil reservoir sample SB2"
                     /db_xref="taxon:2004547"
                     /environmental_sample
                     /geo_loc_name="USA: Alaska, North Slope, Schrader Bluff
                     formation"
                     /collection_date="2011-09-01"
                     /metagenome_source="oil reservoir metagenome"
                     /metagenomic
WGS         DUKV01000001-DUKV01000072
WGS_SCAFLD  NZ_DUKV01000001-NZ_DUKV01000072
//
LOCUS       NZ_WOWC01000000      3668699 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax volcanii strain pws11, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WOWC00000000
VERSION     NZ_WOWC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13475836
            Assembly: GCF_012726105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3668699)
  AUTHORS   Verma,D.K., Gopal,K. and Prasad,E.S.
  TITLE     Haloferax alexandrinus strain pws11
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3668699)
  AUTHORS   Verma,D.K., Gopal,K. and Prasad,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Advanced Protein Centre, CSIR-Institue of
            Microbial Technology, F9 Boys Hostel Imtech, IMTECH Sector 39A,
            Chandigarh, Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WOWC00000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_WOWC00000000.  This version of the project
            (01) has the accession number NZ_WOWC01000000, and consists of
            sequences WOWC01000001-WOWC01000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9(CGWB)
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012726105.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:08:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,742
            CDSs (total)                      :: 3,685
            Genes (coding)                    :: 3,634
            CDSs (with protein)               :: 3,634
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 23 of 51
            Pseudo Genes (incomplete)         :: 27 of 51
            Pseudo Genes (internal stop)      :: 5 of 51
            Pseudo Genes (multiple problems)  :: 4 of 51
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3668699
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="pws11"
                     /db_xref="taxon:2246"
                     /geo_loc_name="India"
                     /collection_date="2018-07-19"
WGS         WOWC01000001-WOWC01000003
WGS_SCAFLD  NZ_WOWC01000001-NZ_WOWC01000003
//
LOCUS       NZ_SNUP01000000      2008408 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. ES12, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUP00000000
VERSION     NZ_SNUP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963470
            Assembly: GCF_012027515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. ES12
  ORGANISM  Thermococcus sp. ES12
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2008408)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2008408)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St, Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUP00000000.1.
            The Thermococcus sp. ES12 whole genome shotgun (WGS) project has
            the project accession NZ_SNUP00000000.  This version of the project
            (01) has the accession number NZ_SNUP01000000, and consists of
            sequences SNUP01000001-SNUP01000159.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 25x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027515.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:03:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,316
            CDSs (total)                      :: 2,263
            Genes (coding)                    :: 2,189
            CDSs (with protein)               :: 2,189
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 1 of 74
            Pseudo Genes (incomplete)         :: 72 of 74
            Pseudo Genes (internal stop)      :: 1 of 74
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008408
                     /organism="Thermococcus sp. ES12"
                     /mol_type="genomic DNA"
                     /strain="ES12"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638246"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUP01000001-SNUP01000159
WGS_SCAFLD  NZ_SNUP01000001-NZ_SNUP01000159
//
LOCUS       NZ_JAAOHT010000000   4528563 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula sp. JP-Z28, whole genome shotgun sequencing project.
ACCESSION   NZ_JAAOHT000000000
VERSION     NZ_JAAOHT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14351821
            Assembly: GCF_011440255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. JP-Z28
  ORGANISM  Haloarcula sp. JP-Z28
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4528563)
  AUTHORS   Wang,Z., Xu,J.Q., Xu,W.M., Li,Y., Zhou,Y., Lu,Z.Z., Hou,J., Zhu,L.
            and Cui,H.L.
  TITLE     Salinigranum salinum sp. nov., isolated from a marine solar saltern
  JOURNAL   Int J Syst Evol Microbiol 66 (8), 3017-3021 (2016)
   PUBMED   27151192
REFERENCE   2  (bases 1 to 4528563)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2020) School of Agricultural Equipment
            Engineering, Jiangsu University, Xuefu Road, Zhenjiang, Jiangsu
            212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAOHT000000000.1.
            The Haloarcula sp. JP-Z28 whole genome shotgun (WGS) project has
            the project accession NZ_JAAOHT000000000.  This version of the
            project (01) has the accession number NZ_JAAOHT010000000, and
            consists of sequences JAAOHT010000001-JAAOHT010000172.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011440255.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:05:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,777
            CDSs (total)                      :: 4,715
            Genes (coding)                    :: 4,486
            CDSs (with protein)               :: 4,486
            Genes (RNA)                       :: 62
            rRNAs                             :: 5, 4 (5S, 16S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 1, 4 (5S, 16S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 229
            CDSs (without protein)            :: 229
            Pseudo Genes (ambiguous residues) :: 0 of 229
            Pseudo Genes (frameshifted)       :: 35 of 229
            Pseudo Genes (incomplete)         :: 202 of 229
            Pseudo Genes (internal stop)      :: 25 of 229
            Pseudo Genes (multiple problems)  :: 28 of 229
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4528563
                     /organism="Haloarcula sp. JP-Z28"
                     /mol_type="genomic DNA"
                     /strain="JP-Z28"
                     /isolation_source="soil"
                     /db_xref="taxon:2716715"
                     /geo_loc_name="China: Anda"
                     /lat_lon="46.27 N 125.22 E"
                     /collection_date="2015-05"
WGS         JAAOHT010000001-JAAOHT010000172
WGS_SCAFLD  NZ_JAAOHT010000001-NZ_JAAOHT010000172
//
LOCUS       NZ_SNUQ01000000      1795455 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. CX2, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUQ00000000
VERSION     NZ_SNUQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963469
            Assembly: GCF_012027555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. CX2
  ORGANISM  Thermococcus sp. CX2
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1795455)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1795455)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUQ00000000.1.
            The Thermococcus sp. CX2 whole genome shotgun (WGS) project has the
            project accession NZ_SNUQ00000000.  This version of the project
            (01) has the accession number NZ_SNUQ01000000, and consists of
            sequences SNUQ01000001-SNUQ01000025.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 48x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027555.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:59:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,995
            CDSs (total)                      :: 1,943
            Genes (coding)                    :: 1,926
            CDSs (with protein)               :: 1,926
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 6 of 17
            Pseudo Genes (incomplete)         :: 13 of 17
            Pseudo Genes (internal stop)      :: 0 of 17
            Pseudo Genes (multiple problems)  :: 2 of 17
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795455
                     /organism="Thermococcus sp. CX2"
                     /mol_type="genomic DNA"
                     /strain="CX2"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:163006"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUQ01000001-SNUQ01000025
WGS_SCAFLD  NZ_SNUQ01000001-NZ_SNUQ01000025
//
LOCUS       NZ_JAAVUO010000000   4051622 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronococcus sp. JC468, whole genome shotgun sequencing project.
ACCESSION   NZ_JAAVUO000000000
VERSION     NZ_JAAVUO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13876162
            Assembly: GCF_012163165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronococcus sp. JC468
  ORGANISM  Natronococcus sp. JC468
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 4051622)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2020) Bioinfomatics, The Institute of
            Microbiology of the Chinese Academy of Sciences, No. 1 Beichen West
            Road, Chaoyang Disct, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAVUO000000000.1.
            The Natronococcus sp. JC468 whole genome shotgun (WGS) project has
            the project accession NZ_JAAVUO000000000.  This version of the
            project (01) has the accession number NZ_JAAVUO010000000, and
            consists of sequences JAAVUO010000001-JAAVUO010000120.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 1.05
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 285x
            Sequencing Technology  :: Illumina X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012163165.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:06:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,140
            CDSs (total)                      :: 4,082
            Genes (coding)                    :: 3,939
            CDSs (with protein)               :: 3,939
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 143
            CDSs (without protein)            :: 143
            Pseudo Genes (ambiguous residues) :: 0 of 143
            Pseudo Genes (frameshifted)       :: 46 of 143
            Pseudo Genes (incomplete)         :: 109 of 143
            Pseudo Genes (internal stop)      :: 28 of 143
            Pseudo Genes (multiple problems)  :: 36 of 143
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4051622
                     /organism="Natronococcus sp. JC468"
                     /mol_type="genomic DNA"
                     /strain="JC468"
                     /isolation_source="soil from indoor potted plant"
                     /culture_collection="KCTC:4265"
                     /db_xref="taxon:1961921"
                     /geo_loc_name="India: JNTUH, Hyderabad"
                     /altitude="1 m"
                     /collection_date="2016-07"
                     /collected_by="Prof. Ch. Sasikala"
WGS         JAAVUO010000001-JAAVUO010000120
WGS_SCAFLD  NZ_JAAVUO010000001-NZ_JAAVUO010000120
//
LOCUS       NZ_SNUR01000000      2048798 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. Bubb.Bath strain BUBBLE BATH, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SNUR00000000
VERSION     NZ_SNUR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963467
            Assembly: GCF_012027595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. Bubb.Bath
  ORGANISM  Thermococcus sp. Bubb.Bath
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2048798)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2048798)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUR00000000.1.
            The Thermococcus sp. Bubb.Bath whole genome shotgun (WGS) project
            has the project accession NZ_SNUR00000000.  This version of the
            project (01) has the accession number NZ_SNUR01000000, and consists
            of sequences SNUR01000001-SNUR01000083.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 36x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027595.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:01:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,350
            CDSs (total)                      :: 2,299
            Genes (coding)                    :: 2,233
            CDSs (with protein)               :: 2,233
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 20 of 66
            Pseudo Genes (incomplete)         :: 49 of 66
            Pseudo Genes (internal stop)      :: 4 of 66
            Pseudo Genes (multiple problems)  :: 6 of 66
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048798
                     /organism="Thermococcus sp. Bubb.Bath"
                     /mol_type="genomic DNA"
                     /strain="BUBBLE BATH"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638242"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUR01000001-SNUR01000083
WGS_SCAFLD  NZ_SNUR01000001-NZ_SNUR01000083
//
LOCUS       NZ_SNUK01000000      2139369 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. JdF3, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUK00000000
VERSION     NZ_SNUK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963476
            Assembly: GCF_012027495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. JdF3
  ORGANISM  Thermococcus sp. JdF3
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2139369)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2139369)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUK00000000.1.
            The Thermococcus sp. JdF3 whole genome shotgun (WGS) project has
            the project accession NZ_SNUK00000000.  This version of the project
            (01) has the accession number NZ_SNUK01000000, and consists of
            sequences SNUK01000001-SNUK01000048.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 15x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027495.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:59:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,384
            CDSs (total)                      :: 2,330
            Genes (coding)                    :: 2,295
            CDSs (with protein)               :: 2,295
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 6 of 35
            Pseudo Genes (incomplete)         :: 30 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 2 of 35
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139369
                     /organism="Thermococcus sp. JdF3"
                     /mol_type="genomic DNA"
                     /strain="JDF3"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638258"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUK01000001-SNUK01000048
WGS_SCAFLD  NZ_SNUK01000001-NZ_SNUK01000048
//
LOCUS       NZ_SNUO01000000      2045593 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. GR4, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUO00000000
VERSION     NZ_SNUO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963472
            Assembly: GCF_012027545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. GR4
  ORGANISM  Thermococcus sp. GR4
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2045593)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2045593)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUO00000000.1.
            The Thermococcus sp. GR4 whole genome shotgun (WGS) project has the
            project accession NZ_SNUO00000000.  This version of the project
            (01) has the accession number NZ_SNUO01000000, and consists of
            sequences SNUO01000001-SNUO01000201.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 51x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027545.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 11:59:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,362
            CDSs (total)                      :: 2,305
            Genes (coding)                    :: 2,241
            CDSs (with protein)               :: 2,241
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 13 of 64
            Pseudo Genes (incomplete)         :: 54 of 64
            Pseudo Genes (internal stop)      :: 3 of 64
            Pseudo Genes (multiple problems)  :: 6 of 64
            CRISPR Arrays                     :: 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045593
                     /organism="Thermococcus sp. GR4"
                     /mol_type="genomic DNA"
                     /strain="GR4"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638254"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUO01000001-SNUO01000201
WGS_SCAFLD  NZ_SNUO01000001-NZ_SNUO01000201
//
LOCUS       NZ_DUJU01000000      4242804 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Methanosarcina acetivorans isolate UBA8876, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DUJU00000000
VERSION     NZ_DUJU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13193048
            Sequence Read Archive: SRR606249
            Assembly: GCF_013329655.1
KEYWORDS    WGS; ENV; RefSeq; TPA:assembly.
SOURCE      Methanosarcina acetivorans
  ORGANISM  Methanosarcina acetivorans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4242804)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4242804)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DUJU00000000.1.
            The Methanosarcina acetivorans whole genome shotgun (WGS) project
            has the project accession NZ_DUJU00000000.  This version of the
            project (01) has the accession number NZ_DUJU01000000, and consists
            of sequences DUJU01000001-DUJU01000201.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013329655.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:12:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,725
            CDSs (total)                      :: 3,675
            Genes (coding)                    :: 3,567
            CDSs (with protein)               :: 3,567
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 37 of 108
            Pseudo Genes (incomplete)         :: 76 of 108
            Pseudo Genes (internal stop)      :: 34 of 108
            Pseudo Genes (multiple problems)  :: 34 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4242804
                     /organism="Methanosarcina acetivorans"
                     /mol_type="genomic DNA"
                     /isolate="UBA8876"
                     /db_xref="taxon:2214"
                     /environmental_sample
                     /metagenomic
WGS         DUJU01000001-DUJU01000201
WGS_SCAFLD  NZ_DUJU01000001-NZ_DUJU01000201
//
LOCUS       NZ_SNUH01000000      2167521 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus sp. M36, whole genome shotgun sequencing project.
ACCESSION   NZ_SNUH00000000
VERSION     NZ_SNUH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10963479
            Assembly: GCF_012027355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus sp. M36
  ORGANISM  Thermococcus sp. M36
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2167521)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Insights into the genomics of deep subsurface vs. near surface
            Thermococcus isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2167521)
  AUTHORS   Strang,L.C. and Moyer,C.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2019) Biology, Western Washington University, 516
            High St., Bellingham, WA 98225, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNUH00000000.1.
            The Thermococcus sp. M36 whole genome shotgun (WGS) project has the
            project accession NZ_SNUH00000000.  This version of the project
            (01) has the accession number NZ_SNUH01000000, and consists of
            sequences SNUH01000001-SNUH01000403.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 36x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012027355.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:08:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,442
            CDSs (total)                      :: 2,387
            Genes (coding)                    :: 2,340
            CDSs (with protein)               :: 2,340
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 8 of 47
            Pseudo Genes (incomplete)         :: 38 of 47
            Pseudo Genes (internal stop)      :: 4 of 47
            Pseudo Genes (multiple problems)  :: 3 of 47
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167521
                     /organism="Thermococcus sp. M36"
                     /mol_type="genomic DNA"
                     /strain="M36"
                     /isolation_source="Hydrothermal vent"
                     /db_xref="taxon:1638261"
                     /geo_loc_name="Pacific Ocean"
                     /collection_date="1988-01/2008-12"
WGS         SNUH01000001-SNUH01000403
WGS_SCAFLD  NZ_SNUH01000001-NZ_SNUH01000403
//
LOCUS       NZ_JABUQZ010000000   4552005 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloterrigena gelatinilytica strain SYSU A558-1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABUQZ000000000
VERSION     NZ_JABUQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15098898
            Assembly: GCF_013342145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloterrigena gelatinilytica
  ORGANISM  Haloterrigena gelatinilytica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Haloterrigena.
REFERENCE   1  (bases 1 to 4552005)
  AUTHORS   Liu,B.-B.
  TITLE     Haloterrigena sp. nov., an extremely halophilic archaeon isolated
            from a saline sediment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4552005)
  AUTHORS   Liu,B.-B.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) School of Life Sciences, Sun Yat-Sen
            University, No. 135, Xingang West Road, Guangzhou 510275, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABUQZ000000000.1.
            The Haloterrigena gelatinilytica whole genome shotgun (WGS) project
            has the project accession NZ_JABUQZ000000000.  This version of the
            project (01) has the accession number NZ_JABUQZ010000000, and
            consists of sequences JABUQZ010000001-JABUQZ010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SOAPdenovo v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013342145.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:21:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,560
            CDSs (total)                      :: 4,495
            Genes (coding)                    :: 4,417
            CDSs (with protein)               :: 4,417
            Genes (RNA)                       :: 65
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 41 of 78
            Pseudo Genes (incomplete)         :: 47 of 78
            Pseudo Genes (internal stop)      :: 3 of 78
            Pseudo Genes (multiple problems)  :: 12 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4552005
                     /organism="Haloterrigena gelatinilytica"
                     /mol_type="genomic DNA"
                     /strain="SYSU A558-1"
                     /isolation_source="salt lake sediment"
                     /type_material="type strain of Haloterrigena
                     gelatinilytica"
                     /db_xref="taxon:2741724"
                     /geo_loc_name="China"
                     /lat_lon="42.686816 N 89.330891 E"
                     /altitude="-248.08 m"
                     /collection_date="2015-08-14"
                     /collected_by="Bing-bing Liu"
                     /identified_by="Bingbing Liu"
WGS         JABUQZ010000001-JABUQZ010000003
WGS_SCAFLD  NZ_JABUQZ010000001-NZ_JABUQZ010000003
//
LOCUS       NZ_JACDNP010000000   2859524 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorhabdus salina strain FL145, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACDNP000000000
VERSION     NZ_JACDNP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15463067
            Assembly: GCF_013839425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorhabdus salina
  ORGANISM  Halorhabdus salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorhabdus.
REFERENCE   1  (bases 1 to 2859524)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaea isolated from salted seafood
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2859524)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUL-2020) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDNP000000000.1.
            The Halorhabdus salina whole genome shotgun (WGS) project has the
            project accession NZ_JACDNP000000000.  This version of the project
            (01) has the accession number NZ_JACDNP010000000, and consists of
            sequences JACDNP010000001-JACDNP010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013839425.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:22:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,896
            CDSs (total)                      :: 2,845
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 21 of 56
            Pseudo Genes (incomplete)         :: 39 of 56
            Pseudo Genes (internal stop)      :: 8 of 56
            Pseudo Genes (multiple problems)  :: 11 of 56
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859524
                     /organism="Halorhabdus salina"
                     /mol_type="genomic DNA"
                     /strain="FL145"
                     /isolation_source="Salted seafood"
                     /type_material="type strain of Halorhabdus salina"
                     /db_xref="taxon:2750670"
                     /geo_loc_name="China: AnHui"
                     /collection_date="2018-07-10"
WGS         JACDNP010000001-JACDNP010000025
WGS_SCAFLD  NZ_JACDNP010000001-NZ_JACDNP010000025
//
LOCUS       NZ_JACHGX010000000   2368961 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobacterium salinarum strain DSM 669, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHGX000000000
VERSION     NZ_JACHGX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908392
            Assembly: GCF_014202515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2368961)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2368961)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHGX000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JACHGX000000000.  This version of the
            project (01) has the accession number NZ_JACHGX010000000, and
            consists of sequences JACHGX010000001-JACHGX010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 590.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014202515.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:28:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,516
            CDSs (total)                      :: 2,464
            Genes (coding)                    :: 2,411
            CDSs (with protein)               :: 2,411
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 12 of 53
            Pseudo Genes (incomplete)         :: 47 of 53
            Pseudo Genes (internal stop)      :: 6 of 53
            Pseudo Genes (multiple problems)  :: 12 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368961
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="DSM 669"
                     /culture_collection="DSM:669"
                     /type_material="type strain of Halobacterium cutirubrum"
                     /db_xref="taxon:2242"
WGS         JACHGX010000001-JACHGX010000037
WGS_SCAFLD  NZ_JACHGX010000001-NZ_JACHGX010000037
//
LOCUS       NZ_JACAWU010000000   3377131 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronomonas gomsonensis strain YCN60, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACAWU000000000
VERSION     NZ_JACAWU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15354821
            Assembly: GCF_013391635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronomonas gomsonensis
  ORGANISM  Natronomonas gomsonensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 3377131)
  AUTHORS   Cui,H.
  TITLE     Natronomonas halophila sp. nov. and Natronomonas salina sp. nov.,
            two new members of the genus Natronomonas
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3377131)
  AUTHORS   Cui,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2020) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang
            212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACAWU000000000.1.
            The Natronomonas gomsonensis whole genome shotgun (WGS) project has
            the project accession NZ_JACAWU000000000.  This version of the
            project (01) has the accession number NZ_JACAWU010000000, and
            consists of sequences JACAWU010000001-JACAWU010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. July-2010
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013391635.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:18:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,626
            CDSs (total)                      :: 3,548
            Genes (coding)                    :: 3,528
            CDSs (with protein)               :: 3,528
            Genes (RNA)                       :: 78
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 2 of 20
            Pseudo Genes (incomplete)         :: 17 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 4 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3377131
                     /organism="Natronomonas gomsonensis"
                     /mol_type="genomic DNA"
                     /strain="YCN60"
                     /isolation_source="bottom mud"
                     /db_xref="taxon:1046043"
                     /geo_loc_name="China: Yuncheng salt lake"
                     /collection_date="2010"
WGS         JACAWU010000001-JACAWU010000002
WGS_SCAFLD  NZ_JACAWU010000001-NZ_JACAWU010000002
//
LOCUS       NZ_DUJS01000000      1425756 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  Methanopyrus kandleri isolate UBA8853, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DUJS00000000
VERSION     NZ_DUJS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13193046
            Sequence Read Archive: SRR606249
            Assembly: GCF_013329715.1
KEYWORDS    WGS; ENV; RefSeq; TPA:assembly.
SOURCE      Methanopyrus kandleri
  ORGANISM  Methanopyrus kandleri
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus.
REFERENCE   1  (bases 1 to 1425756)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 1425756)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DUJS00000000.1.
            The Methanopyrus kandleri whole genome shotgun (WGS) project has
            the project accession NZ_DUJS00000000.  This version of the project
            (01) has the accession number NZ_DUJS01000000, and consists of
            sequences DUJS01000001-DUJS01000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013329715.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:27:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,572
            CDSs (total)                      :: 1,533
            Genes (coding)                    :: 1,518
            CDSs (with protein)               :: 1,518
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 12 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1425756
                     /organism="Methanopyrus kandleri"
                     /mol_type="genomic DNA"
                     /isolate="UBA8853"
                     /db_xref="taxon:2320"
                     /environmental_sample
                     /metagenomic
WGS         DUJS01000001-DUJS01000006
WGS_SCAFLD  NZ_DUJS01000001-NZ_DUJS01000006
//
LOCUS       NZ_JACDUL010000000   1757782 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanococcus maripaludis strain C8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUL000000000
VERSION     NZ_JACDUL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908334
            Assembly: GCF_013760955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1757782)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1757782)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUL000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUL000000000.  This version of the
            project (01) has the accession number NZ_JACDUL010000000, and
            consists of sequences JACDUL010000001-JACDUL010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 788.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013760955.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:31:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,881
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,829
            CDSs (with protein)               :: 1,829
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 4 of 9
            Pseudo Genes (incomplete)         :: 6 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            Pseudo Genes (multiple problems)  :: 1 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757782
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="C8"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JACDUL010000001-JACDUL010000007
WGS_SCAFLD  NZ_JACDUL010000001-NZ_JACDUL010000007
//
LOCUS       NZ_JACDUP010000000   1786741 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanococcus maripaludis strain C14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUP000000000
VERSION     NZ_JACDUP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908268
            Assembly: GCF_013761205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1786741)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1786741)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUP000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUP000000000.  This version of the
            project (01) has the accession number NZ_JACDUP010000000, and
            consists of sequences JACDUP010000001-JACDUP010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 738.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013761205.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:32:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,927
            CDSs (total)                      :: 1,885
            Genes (coding)                    :: 1,873
            CDSs (with protein)               :: 1,873
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 9 of 12
            Pseudo Genes (internal stop)      :: 2 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786741
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="C14"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JACDUP010000001-JACDUP010000005
WGS_SCAFLD  NZ_JACDUP010000001-NZ_JACDUP010000005
//
LOCUS       NZ_WOYM01000000      2085583 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanothrix sp. isolate WOFA04, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WOYM00000000
VERSION     NZ_WOYM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13475795
            Assembly: GCF_011620785.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (oil field metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2085583)
  AUTHORS   Wemheuer,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Institut fuer Mikrobiologie und Genetik (AG
            Daniel), Genomic and Applied Microbiology & Goettingen Genomics
            Laboratory, Grisebachstr. 8, Goettingen 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WOYM00000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_WOYM00000000.  This version of the project
            (01) has the accession number NZ_WOYM01000000, and consists of
            sequences WOYM01000001-WOYM01000125.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2019
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.088274879399x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011620785.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:21:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,318
            CDSs (total)                      :: 2,271
            Genes (coding)                    :: 2,207
            CDSs (with protein)               :: 2,207
            Genes (RNA)                       :: 47
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 17 of 64
            Pseudo Genes (incomplete)         :: 53 of 64
            Pseudo Genes (internal stop)      :: 3 of 64
            Pseudo Genes (multiple problems)  :: 9 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085583
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="WOFA04"
                     /isolation_source="oil-contaminated soil"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Germany: Wietze"
                     /lat_lon="52.659353 N 9.832481 E"
                     /collection_date="2016-10-18"
                     /metagenome_source="oil field metagenome"
                     /metagenomic
WGS         WOYM01000001-WOYM01000125
WGS_SCAFLD  NZ_WOYM01000001-NZ_WOYM01000125
//
LOCUS       NZ_JACDNQ010000000   2778202 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Natronomonas sp. LN261, whole genome shotgun sequencing project.
ACCESSION   NZ_JACDNQ000000000
VERSION     NZ_JACDNQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15462429
            Assembly: GCF_013839515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronomonas sp. LN261
  ORGANISM  Natronomonas sp. LN261
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2778202)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaea isolated from salt mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2778202)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUL-2020) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDNQ000000000.1.
            The Natronomonas sp. LN261 whole genome shotgun (WGS) project has
            the project accession NZ_JACDNQ000000000.  This version of the
            project (01) has the accession number NZ_JACDNQ010000000, and
            consists of sequences JACDNQ010000001-JACDNQ010000030.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013839515.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 13:53:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,862
            CDSs (total)                      :: 2,812
            Genes (coding)                    :: 2,749
            CDSs (with protein)               :: 2,749
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 15 of 63
            Pseudo Genes (incomplete)         :: 53 of 63
            Pseudo Genes (internal stop)      :: 7 of 63
            Pseudo Genes (multiple problems)  :: 10 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2778202
                     /organism="Natronomonas sp. LN261"
                     /mol_type="genomic DNA"
                     /strain="LN261"
                     /isolation_source="Salt mine"
                     /db_xref="taxon:2750669"
                     /geo_loc_name="China: AnHui"
                     /collection_date="2016-09-24"
WGS         JACDNQ010000001-JACDNQ010000030
WGS_SCAFLD  NZ_JACDNQ010000001-NZ_JACDNQ010000030
//
LOCUS       NZ_JABURA010000000   4994572 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloterrigena gelatinilytica strain SYSU A121-1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABURA000000000
VERSION     NZ_JABURA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15143775
            Assembly: GCF_013342135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloterrigena gelatinilytica
  ORGANISM  Haloterrigena gelatinilytica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Haloterrigena.
REFERENCE   1  (bases 1 to 4994572)
  AUTHORS   Liu,B.-B.
  TITLE     Haloterrigena sp. nov., an extremely halophilic archaeon isolated
            from a saline sediment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4994572)
  AUTHORS   Liu,B.-B.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2020) School of Life Sciences, Sun Yat-Sen
            University, No. 135, Xingang West Road, Guangzhou 510275, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABURA000000000.1.
            The Haloterrigena gelatinilytica whole genome shotgun (WGS) project
            has the project accession NZ_JABURA000000000.  This version of the
            project (01) has the accession number NZ_JABURA010000000, and
            consists of sequences JABURA010000001-JABURA010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 06-JUN-2020
            Assembly Method        :: SOAPdenovo v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013342135.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 13:53:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,813
            CDSs (total)                      :: 4,743
            Genes (coding)                    :: 4,664
            CDSs (with protein)               :: 4,664
            Genes (RNA)                       :: 70
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 42 of 79
            Pseudo Genes (incomplete)         :: 52 of 79
            Pseudo Genes (internal stop)      :: 14 of 79
            Pseudo Genes (multiple problems)  :: 25 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4994572
                     /organism="Haloterrigena gelatinilytica"
                     /mol_type="genomic DNA"
                     /strain="SYSU A121-1"
                     /isolation_source="salt lake sediment"
                     /db_xref="taxon:2741724"
                     /geo_loc_name="China: Xinjiang"
                     /altitude="-248.08 m"
                     /collection_date="2015-08-14"
WGS         JABURA010000001-JABURA010000004
WGS_SCAFLD  NZ_JABURA010000001-NZ_JABURA010000004
//
LOCUS       NZ_JABXWR010000000   2248716 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanofollis tationis strain DSM 2702, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABXWR000000000
VERSION     NZ_JABXWR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15339967
            Assembly: GCF_013377755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanofollis tationis
  ORGANISM  Methanofollis tationis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanofollis.
REFERENCE   1  (bases 1 to 2248716)
  AUTHORS   Chen,S.-C., Teng,N.-H., Lin,Y.-S., Lai,M.-C., Chen,H.-H. and
            Wang,C.-C.
  TITLE     Methanofollis fontis sp. nov., a methanogen isolated from marine
            sediments near a cold seep at Four-Way Closure Ridge offshore
            southwestern Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2248716)
  AUTHORS   Chen,S.-C., Lai,M.-C. and You,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2020) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABXWR000000000.1.
            The Methanofollis tationis whole genome shotgun (WGS) project has
            the project accession NZ_JABXWR000000000.  This version of the
            project (01) has the accession number NZ_JABXWR010000000, and
            consists of sequences JABXWR010000001-JABXWR010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSM 2702; Prof. Mei-Chin
            Lai, Department of Life Sciences, National Chung Hsing University,
            Taichung, Taiwan.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-JUN-2020
            Assembly Method        :: miniasm v. v0.3; racon v. v1.3.3; SPAdes
                                      v. v.3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 370.0x
            Sequencing Technology  :: Illumina MiSeq; PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013377755.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 12:17:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,371
            CDSs (total)                      :: 2,313
            Genes (coding)                    :: 2,282
            CDSs (with protein)               :: 2,282
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 9 of 31
            Pseudo Genes (incomplete)         :: 22 of 31
            Pseudo Genes (internal stop)      :: 2 of 31
            Pseudo Genes (multiple problems)  :: 2 of 31
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248716
                     /organism="Methanofollis tationis"
                     /mol_type="genomic DNA"
                     /strain="DSM 2702"
                     /culture_collection="DSM:2702"
                     /type_material="type strain of Methanofollis tationis"
                     /db_xref="taxon:81417"
                     /geo_loc_name="Chile: the oasis of San Petro di Atacama on
                     Mount Tatio"
                     /altitude="4750 m"
                     /collection_date="1984"
WGS         JABXWR010000001-JABXWR010000002
WGS_SCAFLD  NZ_JABXWR010000001-NZ_JABXWR010000002
//
LOCUS       NZ_QKOF01000000      1654216 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanothermobacter thermautotrophicus strain WHS, whole genome
            shotgun sequencing project.
ACCESSION   NZ_QKOF00000000
VERSION     NZ_QKOF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09381010
            Assembly: GCF_014889545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanothermobacter thermautotrophicus
  ORGANISM  Methanothermobacter thermautotrophicus
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1654216)
  AUTHORS   Mckay,L.J., Klingelsmith,K., Inskeep,W.P. and Fields,M.W.
  TITLE     Draft genome sequence of Methanothermobacter thermautotrophicus
            Strain WHS, a thermophilic, hydrogenotrophic methanogen isolated
            from Washburn Hot Springs in Yellowstone National Park, USA
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1654216)
  AUTHORS   Mckay,L.J., Klingelsmith,K., Inskeep,W.P. and Fields,M.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2018) Center for Biofilm Engineering, Montana
            State University, 313 Barnard Hall, Bozeman, MT 59717, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QKOF00000000.1.
            The Methanothermobacter thermautotrophicus whole genome shotgun
            (WGS) project has the project accession NZ_QKOF00000000.  This
            version of the project (01) has the accession number
            NZ_QKOF01000000, and consists of sequences
            QKOF01000001-QKOF01000007.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Luke McKay.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2017
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 141.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014889545.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:18:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,817
            CDSs (total)                      :: 1,774
            Genes (coding)                    :: 1,759
            CDSs (with protein)               :: 1,759
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 7 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 3 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654216
                     /organism="Methanothermobacter thermautotrophicus"
                     /mol_type="genomic DNA"
                     /strain="WHS"
                     /isolation_source="hot spring sediment"
                     /db_xref="taxon:145262"
                     /geo_loc_name="USA: Wyoming"
                     /lat_lon="44.76500000 N 110.43027778 W"
                     /collection_date="2015"
WGS         QKOF01000001-QKOF01000007
WGS_SCAFLD  NZ_QKOF01000001-NZ_QKOF01000007
//
LOCUS       NZ_JACKXD010000000   3490400 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobellus ruber strain MBLA0160, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACKXD000000000
VERSION     NZ_JACKXD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15745140
            Assembly: GCF_014212355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus ruber
  ORGANISM  Halobellus ruber
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3490400)
  AUTHORS   Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2020) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Yeonsu-Gu, Incheon KS006,
            South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACKXD000000000.1.
            The Halobellus ruber whole genome shotgun (WGS) project has the
            project accession NZ_JACKXD000000000.  This version of the project
            (01) has the accession number NZ_JACKXD010000000, and consists of
            sequences JACKXD010000001-JACKXD010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.2x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014212355.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:17:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,483
            CDSs (total)                      :: 3,426
            Genes (coding)                    :: 3,331
            CDSs (with protein)               :: 3,331
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 36 of 95
            Pseudo Genes (incomplete)         :: 63 of 95
            Pseudo Genes (internal stop)      :: 16 of 95
            Pseudo Genes (multiple problems)  :: 19 of 95
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3490400
                     /organism="Halobellus ruber"
                     /mol_type="genomic DNA"
                     /strain="MBLA0160"
                     /isolation_source="solar salten"
                     /type_material="type strain of Halobellus ruber"
                     /db_xref="taxon:2761102"
                     /geo_loc_name="South Korea: Incheon"
                     /collection_date="2016-01"
WGS         JACKXD010000001-JACKXD010000012
WGS_SCAFLD  NZ_JACKXD010000001-NZ_JACKXD010000012
//
LOCUS       NZ_JACIWE010000000   1977326 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Thermococcus sp. isolate MAG-17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACIWE000000000
VERSION     NZ_JACIWE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15637567
            Assembly: GCF_014361105.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (oil production facility metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1977326)
  AUTHORS   Liu,Y.F., Chen,J., Liu,Z.L., Shou,L.B., Lin,D.D., Zhou,L.,
            Yang,S.Z., Liu,J.F., Li,W., Gu,J.D. and Mu,B.Z.
  TITLE     Anaerobic Degradation of Paraffins by Thermophilic Actinobacteria
            under Methanogenic Conditions
  JOURNAL   Environ Sci Technol 54 (17), 10610-10620 (2020)
   PUBMED   32786606
REFERENCE   2  (bases 1 to 1977326)
  AUTHORS   Liu,Y.-F.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2020) Bioengineering, East China University of
            Science and Technology, 130, Meilong Rd, Shanghai 200231, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACIWE000000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JACIWE000000000.  This version of the project
            (01) has the accession number NZ_JACIWE010000000, and consists of
            sequences JACIWE010000001-JACIWE010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 326.516875714x
            Sequencing Technology  :: HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014361105.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:13:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,221
            CDSs (total)                      :: 2,167
            Genes (coding)                    :: 2,106
            CDSs (with protein)               :: 2,106
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 16 of 61
            Pseudo Genes (incomplete)         :: 48 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 11 of 61
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977326
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="MAG-17"
                     /isolation_source="Shengli oilfield at Shandong province"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="China: Dongying"
                     /lat_lon="38.15 N 118.5 E"
                     /collection_date="2016-04-11"
                     /metagenome_source="oil production facility metagenome"
                     /metagenomic
WGS         JACIWE010000001-JACIWE010000059
WGS_SCAFLD  NZ_JACIWE010000001-NZ_JACIWE010000059
//
LOCUS       NZ_BMOC01000000      3067430 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halobellus salinus strain JCM 14359, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMOC00000000
VERSION     NZ_BMOC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245245
            Assembly: GCF_014646875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus salinus
  ORGANISM  Halobellus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3067430)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMOC00000000.1.
            The Halobellus salinus whole genome shotgun (WGS) project has the
            project accession NZ_BMOC00000000.  This version of the project
            (01) has the accession number NZ_BMOC01000000, and consists of
            sequences BMOC01000001-BMOC01000054.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10008995
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 142X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014646875.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:21:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,051
            CDSs (total)                      :: 2,989
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 23 of 102
            Pseudo Genes (incomplete)         :: 82 of 102
            Pseudo Genes (internal stop)      :: 22 of 102
            Pseudo Genes (multiple problems)  :: 21 of 102
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067430
                     /organism="Halobellus salinus"
                     /mol_type="genomic DNA"
                     /strain="JCM 14359"
                     /culture_collection="JCM:14359"
                     /type_material="type strain of Halobellus salinus"
                     /db_xref="taxon:931585"
WGS         BMOC01000001-BMOC01000054
WGS_SCAFLD  NZ_BMOC01000001-NZ_BMOC01000054
//
LOCUS       NZ_SPSA01000000      3776777 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax sp. AS1, whole genome shotgun sequencing project.
ACCESSION   NZ_SPSA00000000
VERSION     NZ_SPSA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11267987
            Assembly: GCF_014530665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. AS1
  ORGANISM  Haloferax sp. AS1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3776777)
  AUTHORS   Naik,M., Imran,M., Vaigankar,D.C., Mujawar,S.Y., Malik,A.D. and
            Gaonkar,S.K.
  TITLE     Genome guided bioprospecting of extremely halophilic archaea
            Haloferax sp. AS1, isolated from Ribandar salt pan of Goa, India
            for CAZymes, bioremediation potential and studying metabolic
            versatility
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3776777)
  AUTHORS   Naik,M. and Imran,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2019) Microbiology, Goa University, Taleigao
            Plateau, Panjim, Goa 403206, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SPSA00000000.1.
            The Haloferax sp. AS1 whole genome shotgun (WGS) project has the
            project accession NZ_SPSA00000000.  This version of the project
            (01) has the accession number NZ_SPSA01000000, and consists of
            sequences SPSA01000001-SPSA01000003.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Dr. Milind Mohan Naik,
            Microbiology, Goa University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014530665.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:21:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,815
            CDSs (total)                      :: 3,758
            Genes (coding)                    :: 3,712
            CDSs (with protein)               :: 3,712
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 17 of 46
            Pseudo Genes (incomplete)         :: 27 of 46
            Pseudo Genes (internal stop)      :: 6 of 46
            Pseudo Genes (multiple problems)  :: 4 of 46
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3776777
                     /organism="Haloferax sp. AS1"
                     /mol_type="genomic DNA"
                     /strain="AS1"
                     /isolation_source="water"
                     /db_xref="taxon:2562277"
                     /geo_loc_name="India: Saltpan Ribandar"
                     /collection_date="2016-03"
WGS         SPSA01000001-SPSA01000003
WGS_SCAFLD  NZ_SPSA01000001-NZ_SPSA01000003
//
LOCUS       NZ_BMPG01000000      3380345 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halocalculus aciditolerans strain JCM 19596, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMPG00000000
VERSION     NZ_BMPG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245280
            Assembly: GCF_014647475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halocalculus aciditolerans
  ORGANISM  Halocalculus aciditolerans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halocalculus.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3380345)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMPG00000000.1.
            The Halocalculus aciditolerans whole genome shotgun (WGS) project
            has the project accession NZ_BMPG00000000.  This version of the
            project (01) has the accession number NZ_BMPG01000000, and consists
            of sequences BMPG01000001-BMPG01000027.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009039
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 142X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014647475.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:26:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,520
            CDSs (total)                      :: 3,471
            Genes (coding)                    :: 3,431
            CDSs (with protein)               :: 3,431
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 16 of 40
            Pseudo Genes (incomplete)         :: 31 of 40
            Pseudo Genes (internal stop)      :: 10 of 40
            Pseudo Genes (multiple problems)  :: 14 of 40
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380345
                     /organism="Halocalculus aciditolerans"
                     /mol_type="genomic DNA"
                     /strain="JCM 19596"
                     /culture_collection="JCM:19596"
                     /type_material="type strain of Halocalculus aciditolerans"
                     /db_xref="taxon:1383812"
WGS         BMPG01000001-BMPG01000027
WGS_SCAFLD  NZ_BMPG01000001-NZ_BMPG01000027
//
LOCUS       NZ_WANV01000000      2030166 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Thermococcus sp. isolate S141_64_esom, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WANV00000000
VERSION     NZ_WANV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12837280
            Assembly: GCF_015521605.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2030166)
  AUTHORS   Reysenbach,A.L., St John,E., Meneghin,J., Flores,G.E., Podar,M.,
            Dombrowski,N., Spang,A., L'Haridon,S., Humphris,S.E., de
            Ronde,C.E.J., Caratori Tontini,F., Tivey,M., Stucker,V.K.,
            Stewart,L.C., Diehl,A. and Bach,W.
  TITLE     Complex subsurface hydrothermal fluid mixing at a submarine arc
            volcano supports distinct and highly diverse microbial communities
  JOURNAL   Proc Natl Acad Sci U S A 117 (51), 32627-32638 (2020)
   PUBMED   33277434
REFERENCE   2  (bases 1 to 2030166)
  AUTHORS   Reysenbach,A.-L., Meneghin,J. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WANV00000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_WANV00000000.  This version of the project
            (01) has the accession number NZ_WANV01000000, and consists of
            sequences WANV01000001-WANV01000042.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.1.1-2-g02102e1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.94x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015521605.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:27:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,285
            CDSs (total)                      :: 2,234
            Genes (coding)                    :: 2,214
            CDSs (with protein)               :: 2,214
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 2 of 20
            Pseudo Genes (incomplete)         :: 19 of 20
            Pseudo Genes (internal stop)      :: 0 of 20
            Pseudo Genes (multiple problems)  :: 1 of 20
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030166
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S141_64_esom"
                     /isolation_source="deep-sea hydrothermal deposit"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="34.86111866 S 179.0576651 E"
                     /collection_date="2018-03"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         WANV01000001-WANV01000042
WGS_SCAFLD  NZ_WANV01000001-NZ_WANV01000042
//
LOCUS       NZ_SUTJ01000000      1999567 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobrevibacter thaueri isolate SIG17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SUTJ00000000
VERSION     NZ_SUTJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11294302
            Assembly: GCF_015062915.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter thaueri (feces metagenome)
  ORGANISM  Methanobrevibacter thaueri
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1999567)
  AUTHORS   Peng,X.
  TITLE     Evolution of Biomass-Degrading Anaerobic Consortia Revealed by
            Metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1999567)
  AUTHORS   Peng,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2019) Chemical Engineering, University of
            California, Santa Barbara, 3357 Engineering II, University of
            California, Santa Barbara, CA 93106-5080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SUTJ00000000.1.
            The Methanobrevibacter thaueri whole genome shotgun (WGS) project
            has the project accession NZ_SUTJ00000000.  This version of the
            project (01) has the accession number NZ_SUTJ01000000, and consists
            of sequences SUTJ01000001-SUTJ01000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34.5477x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015062915.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:23:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,947
            CDSs (total)                      :: 1,913
            Genes (coding)                    :: 1,906
            CDSs (with protein)               :: 1,906
            Genes (RNA)                       :: 34
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 0 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999567
                     /organism="Methanobrevibacter thaueri"
                     /mol_type="genomic DNA"
                     /isolate="SIG17"
                     /isolation_source="feces"
                     /host="San Clemente Island Goat"
                     /db_xref="taxon:190975"
                     /environmental_sample
                     /geo_loc_name="USA: Santa Barbara Zoo"
                     /lat_lon="34.4149 N 119.841 W"
                     /collection_date="2016-06-16"
                     /metagenome_source="feces metagenome"
                     /metagenomic
WGS         SUTJ01000001-SUTJ01000027
WGS_SCAFLD  NZ_SUTJ01000001-NZ_SUTJ01000027
//
LOCUS       NZ_WAOX01000000      1830464 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Thermococcus sp. isolate S143_62, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WAOX00000000
VERSION     NZ_WAOX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12837308
            Assembly: GCF_015521065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1830464)
  AUTHORS   Reysenbach,A.L., St John,E., Meneghin,J., Flores,G.E., Podar,M.,
            Dombrowski,N., Spang,A., L'Haridon,S., Humphris,S.E., de
            Ronde,C.E.J., Caratori Tontini,F., Tivey,M., Stucker,V.K.,
            Stewart,L.C., Diehl,A. and Bach,W.
  TITLE     Complex subsurface hydrothermal fluid mixing at a submarine arc
            volcano supports distinct and highly diverse microbial communities
  JOURNAL   Proc Natl Acad Sci U S A 117 (51), 32627-32638 (2020)
   PUBMED   33277434
REFERENCE   2  (bases 1 to 1830464)
  AUTHORS   Reysenbach,A.-L., Meneghin,J. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WAOX00000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_WAOX00000000.  This version of the project
            (01) has the accession number NZ_WAOX01000000, and consists of
            sequences WAOX01000001-WAOX01000170.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.1.1-2-g02102e1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 48.24x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015521065.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:31:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,180
            CDSs (total)                      :: 2,131
            Genes (coding)                    :: 2,057
            CDSs (with protein)               :: 2,057
            Genes (RNA)                       :: 49
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 6 of 74
            Pseudo Genes (incomplete)         :: 67 of 74
            Pseudo Genes (internal stop)      :: 3 of 74
            Pseudo Genes (multiple problems)  :: 2 of 74
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1830464
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S143_62"
                     /isolation_source="deep-sea hydrothermal deposit"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="34.86107624 S 179.0576384 E"
                     /collection_date="2018-03"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         WAOX01000001-WAOX01000170
WGS_SCAFLD  NZ_WAOX01000001-NZ_WAOX01000170
//
LOCUS       NZ_WAPP01000000      2134694 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Thermococcus sp. isolate S144_46, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WAPP00000000
VERSION     NZ_WAPP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12837326
            Assembly: GCF_015520695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Thermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2134694)
  AUTHORS   Reysenbach,A.L., St John,E., Meneghin,J., Flores,G.E., Podar,M.,
            Dombrowski,N., Spang,A., L'Haridon,S., Humphris,S.E., de
            Ronde,C.E.J., Caratori Tontini,F., Tivey,M., Stucker,V.K.,
            Stewart,L.C., Diehl,A. and Bach,W.
  TITLE     Complex subsurface hydrothermal fluid mixing at a submarine arc
            volcano supports distinct and highly diverse microbial communities
  JOURNAL   Proc Natl Acad Sci U S A 117 (51), 32627-32638 (2020)
   PUBMED   33277434
REFERENCE   2  (bases 1 to 2134694)
  AUTHORS   Reysenbach,A.-L., Meneghin,J. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WAPP00000000.1.
            The Thermococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_WAPP00000000.  This version of the project
            (01) has the accession number NZ_WAPP01000000, and consists of
            sequences WAPP01000001-WAPP01000192.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.1.1-2-g02102e1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.5x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015520695.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:32:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,523
            CDSs (total)                      :: 2,470
            Genes (coding)                    :: 2,382
            CDSs (with protein)               :: 2,382
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 10 of 88
            Pseudo Genes (incomplete)         :: 81 of 88
            Pseudo Genes (internal stop)      :: 2 of 88
            Pseudo Genes (multiple problems)  :: 4 of 88
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134694
                     /organism="Thermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S144_46"
                     /isolation_source="deep-sea hydrothermal deposit"
                     /db_xref="taxon:35749"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="34.8610792 S 179.057703 E"
                     /collection_date="2018-03"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         WAPP01000001-WAPP01000192
WGS_SCAFLD  NZ_WAPP01000001-NZ_WAPP01000192
//
LOCUS       NZ_BMNY01000000      1726561 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermogymnomonas acidicola strain JCM 13583, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMNY00000000
VERSION     NZ_BMNY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245240
            Assembly: GCF_014646795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermogymnomonas acidicola
  ORGANISM  Thermogymnomonas acidicola
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Thermogymnomonas.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 1726561)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMNY00000000.1.
            The Thermogymnomonas acidicola whole genome shotgun (WGS) project
            has the project accession NZ_BMNY00000000.  This version of the
            project (01) has the accession number NZ_BMNY01000000, and consists
            of sequences BMNY01000001-BMNY01000006.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10007108
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 162X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014646795.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:34:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,735
            CDSs (total)                      :: 1,684
            Genes (coding)                    :: 1,674
            CDSs (with protein)               :: 1,674
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 4 of 10
            Pseudo Genes (incomplete)         :: 6 of 10
            Pseudo Genes (internal stop)      :: 5 of 10
            Pseudo Genes (multiple problems)  :: 3 of 10
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726561
                     /organism="Thermogymnomonas acidicola"
                     /mol_type="genomic DNA"
                     /strain="JCM 13583"
                     /culture_collection="JCM:13583"
                     /type_material="type strain of Thermogymnomonas acidicola"
                     /db_xref="taxon:399579"
WGS         BMNY01000001-BMNY01000006
WGS_SCAFLD  NZ_BMNY01000001-NZ_BMNY01000006
//
LOCUS       NZ_JAEDCH010000000   1516699 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate MAG001, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEDCH000000000
VERSION     NZ_JAEDCH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16927148
            Assembly: GCF_016298175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1516699)
  AUTHORS   Zhou,S., Luo,R., Gong,G., Wang,Y., Gesang,Z., Wang,K., Xu,Z. and
            Suolang,S.
  TITLE     Characterization of metagenome-assembled genomes and
            carbohydrate-degrading genes in the gut microbiota of Tibetan pig
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1516699)
  AUTHORS   Suolang,S. and Zhou,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Department of Animal Science, Tibet
            Agricultural and Animal Husbandry College, No. 100, Yucai West
            Road, Bayi District, Linzhi, Tibet 860000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEDCH000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAEDCH000000000.  This version of the
            project (01) has the accession number NZ_JAEDCH010000000, and
            consists of sequences JAEDCH010000001-JAEDCH010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: metaSPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 87.9x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016298175.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:34:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,606
            CDSs (total)                      :: 1,570
            Genes (coding)                    :: 1,557
            CDSs (with protein)               :: 1,557
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 0 of 13
            Pseudo Genes (incomplete)         :: 13 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516699
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="MAG001"
                     /isolation_source="fresh feces"
                     /host="tibetan pig"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Xizang"
                     /collection_date="2019"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAEDCH010000001-JAEDCH010000063
WGS_SCAFLD  NZ_JAEDCH010000001-NZ_JAEDCH010000063
//
LOCUS       NZ_WAKW01000000      1438672 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanothermococcus sp. isolate S013_52_esom, whole genome
            shotgun sequencing project.
ACCESSION   NZ_WAKW00000000
VERSION     NZ_WAKW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12837203
            Assembly: GCF_015523155.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothermococcus sp. (hydrothermal vent metagenome)
  ORGANISM  Methanothermococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae;
            Methanothermococcus.
REFERENCE   1  (bases 1 to 1438672)
  AUTHORS   Reysenbach,A.L., St John,E., Meneghin,J., Flores,G.E., Podar,M.,
            Dombrowski,N., Spang,A., L'Haridon,S., Humphris,S.E., de
            Ronde,C.E.J., Caratori Tontini,F., Tivey,M., Stucker,V.K.,
            Stewart,L.C., Diehl,A. and Bach,W.
  TITLE     Complex subsurface hydrothermal fluid mixing at a submarine arc
            volcano supports distinct and highly diverse microbial communities
  JOURNAL   Proc Natl Acad Sci U S A 117 (51), 32627-32638 (2020)
   PUBMED   33277434
REFERENCE   2  (bases 1 to 1438672)
  AUTHORS   Reysenbach,A.-L., Meneghin,J. and St. John,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2019) Biology, Portland State University, SRTC,
            Rm 246, 1719 SW 10th Ave., Portland, OR 97201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WAKW00000000.1.
            The Methanothermococcus sp. whole genome shotgun (WGS) project has
            the project accession NZ_WAKW00000000.  This version of the project
            (01) has the accession number NZ_WAKW01000000, and consists of
            sequences WAKW01000001-WAKW01000076.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.1.1-2-g02102e1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 107.9x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015523155.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:36:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,564
            CDSs (total)                      :: 1,527
            Genes (coding)                    :: 1,475
            CDSs (with protein)               :: 1,475
            Genes (RNA)                       :: 37
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 13 of 52
            Pseudo Genes (incomplete)         :: 39 of 52
            Pseudo Genes (internal stop)      :: 6 of 52
            Pseudo Genes (multiple problems)  :: 6 of 52
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1438672
                     /organism="Methanothermococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="S013_52_esom"
                     /isolation_source="deep-sea hydrothermal deposit"
                     /db_xref="taxon:2614238"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="34.86107892 S 179.0576362 E"
                     /collection_date="2018-03"
                     /metagenome_source="hydrothermal vent metagenome"
                     /metagenomic
WGS         WAKW01000001-WAKW01000076
WGS_SCAFLD  NZ_WAKW01000001-NZ_WAKW01000076
//
LOCUS       NZ_JADLKL010000000   2220121 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobacterium sp. isolate Rep1_Bin027, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JADLKL000000000
VERSION     NZ_JADLKL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16615614
            Assembly: GCF_016839005.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (bioreactor metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2220121)
  AUTHORS   Wu,Z., Nguyen,D., Lam,T.Y.C., Zhuang,H., Shrestha,S., Raskin,L.,
            Khanal,S.K. and Lee,P.H.
  TITLE     Synergistic association between cytochrome bd-encoded
            Proteiniphilum and reactive oxygen species (ROS)-scavenging
            methanogens in microaerobic-anaerobic digestion of lignocellulosic
            biomass
  JOURNAL   Water Res 190, 116721 (2021)
   PUBMED   33326896
REFERENCE   2  (bases 1 to 2220121)
  AUTHORS   Wu,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2020) Department of Civil and Environmental
            Engineering, Imperial College London, South Kensington, London SW7
            2AZ, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADLKL000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JADLKL000000000.  This version of the project
            (01) has the accession number NZ_JADLKL010000000, and consists of
            sequences JADLKL010000001-JADLKL010000169.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28.5x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016839005.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:42:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,270
            CDSs (total)                      :: 2,221
            Genes (coding)                    :: 2,199
            CDSs (with protein)               :: 2,199
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 22 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220121
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="Rep1_Bin027"
                     /isolation_source="microaeration digestion Rep1"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="21.29 N 157.81 W"
                     /collection_date="2016-10-15"
                     /metagenome_source="bioreactor metagenome"
                     /metagenomic
WGS         JADLKL010000001-JADLKL010000169
WGS_SCAFLD  NZ_JADLKL010000001-NZ_JADLKL010000169
//
LOCUS       NZ_JAFQSO010000000   2110927 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG2112, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFQSO000000000
VERSION     NZ_JAFQSO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16342579
            Assembly: GCF_017409525.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2110927)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2110927)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFQSO000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFQSO000000000.  This version of the
            project (01) has the accession number NZ_JAFQSO010000000, and
            consists of sequences JAFQSO010000001-JAFQSO010000023.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017409525.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:51:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,124
            CDSs (total)                      :: 2,084
            Genes (coding)                    :: 2,069
            CDSs (with protein)               :: 2,069
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 2 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 4 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110927
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG2112"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-12"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFQSO010000001-JAFQSO010000023
WGS_SCAFLD  NZ_JAFQSO010000001-NZ_JAFQSO010000023
//
LOCUS       NZ_JAFUHT010000000   2276257 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG4506, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFUHT000000000
VERSION     NZ_JAFUHT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16344973
            Assembly: GCF_017468685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2276257)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2276257)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFUHT000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFUHT000000000.  This version of the
            project (01) has the accession number NZ_JAFUHT010000000, and
            consists of sequences JAFUHT010000001-JAFUHT010000094.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017468685.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:52:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,389
            CDSs (total)                      :: 2,349
            Genes (coding)                    :: 2,312
            CDSs (with protein)               :: 2,312
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 8 of 37
            Pseudo Genes (incomplete)         :: 28 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 1 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276257
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG4506"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="roe deer"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-11"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFUHT010000001-JAFUHT010000094
WGS_SCAFLD  NZ_JAFUHT010000001-NZ_JAFUHT010000094
//
LOCUS       NZ_JAFSNZ010000000   2159045 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG3316, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFSNZ000000000
VERSION     NZ_JAFSNZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16343783
            Assembly: GCF_017447225.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2159045)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2159045)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFSNZ000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFSNZ000000000.  This version of the
            project (01) has the accession number NZ_JAFSNZ010000000, and
            consists of sequences JAFSNZ010000001-JAFSNZ010000117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017447225.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:52:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,173
            CDSs (total)                      :: 2,133
            Genes (coding)                    :: 2,109
            CDSs (with protein)               :: 2,109
            Genes (RNA)                       :: 40
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 2 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159045
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG3316"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-12"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFSNZ010000001-JAFSNZ010000117
WGS_SCAFLD  NZ_JAFSNZ010000001-NZ_JAFSNZ010000117
//
LOCUS       NZ_JAFRKB010000000   2052329 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG2541, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFRKB000000000
VERSION     NZ_JAFRKB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16343008
            Assembly: GCF_017431965.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2052329)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2052329)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFRKB000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFRKB000000000.  This version of the
            project (01) has the accession number NZ_JAFRKB010000000, and
            consists of sequences JAFRKB010000001-JAFRKB010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017431965.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:50:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,101
            CDSs (total)                      :: 2,063
            Genes (coding)                    :: 2,044
            CDSs (with protein)               :: 2,044
            Genes (RNA)                       :: 38
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 0 of 19
            Pseudo Genes (incomplete)         :: 19 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052329
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG2541"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-12"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFRKB010000001-JAFRKB010000078
WGS_SCAFLD  NZ_JAFRKB010000001-NZ_JAFRKB010000078
//
LOCUS       NZ_JAGGKB010000000   2034780 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus stetteri strain DSM 5262, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGKB000000000
VERSION     NZ_JAGGKB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18244794
            Assembly: GCF_017873335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus stetteri
  ORGANISM  Thermococcus stetteri
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2034780)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2034780)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGKB000000000.1.
            The Thermococcus stetteri whole genome shotgun (WGS) project has
            the project accession NZ_JAGGKB000000000.  This version of the
            project (01) has the accession number NZ_JAGGKB010000000, and
            consists of sequences JAGGKB010000001-JAGGKB010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 454.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017873335.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:53:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,337
            CDSs (total)                      :: 2,284
            Genes (coding)                    :: 2,211
            CDSs (with protein)               :: 2,211
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 34 of 73
            Pseudo Genes (incomplete)         :: 32 of 73
            Pseudo Genes (internal stop)      :: 14 of 73
            Pseudo Genes (multiple problems)  :: 7 of 73
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034780
                     /organism="Thermococcus stetteri"
                     /mol_type="genomic DNA"
                     /strain="DSM 5262"
                     /culture_collection="DSM:5262"
                     /type_material="type strain of Thermococcus stetteri"
                     /db_xref="taxon:49900"
                     /geo_loc_name="Russia: Northern Kurils, Ushishir
                     archipelago"
WGS         JAGGKB010000001-JAGGKB010000007
WGS_SCAFLD  NZ_JAGGKB010000001-NZ_JAGGKB010000007
//
LOCUS       NZ_JAVDZE010000000   1804276 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Thermococcus waiotapuensis strain WT1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAVDZE000000000
VERSION     NZ_JAVDZE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37015851
            Assembly: GCF_032304395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus waiotapuensis
  ORGANISM  Thermococcus waiotapuensis
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1804276)
  AUTHORS   Manners,S.H., Carere,C.R., Dhami,M.K., Dobson,R.C.J. and Stott,M.B.
  TITLE     Draft genome sequence of Thermococcus waiotapuensis WT1T, a
            thermophilic sulphur-dependent archaeon from order Thermococcales
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1804276)
  AUTHORS   Manners,S.H., Carere,C.R., Dhami,M.K., Dobson,R.C.J. and Stott,M.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-AUG-2023) School of Biological Sciences, University
            of Canterbury, 20 Kirkwood Ave, Upper Riccarton, Christchurch 8041,
            New Zealand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVDZE000000000.1.
            The Thermococcus waiotapuensis whole genome shotgun (WGS) project
            has the project accession NZ_JAVDZE000000000.  This version of the
            project (01) has the accession number NZ_JAVDZE010000000, and
            consists of sequences JAVDZE010000001-JAVDZE010000011.
            Bacteria and source DNA available from JCM 10985.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 855.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032304395.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:13:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,999
            CDSs (total)                      :: 1,947
            Genes (coding)                    :: 1,907
            CDSs (with protein)               :: 1,907
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 21 of 40
            Pseudo Genes (incomplete)         :: 14 of 40
            Pseudo Genes (internal stop)      :: 6 of 40
            Pseudo Genes (multiple problems)  :: 1 of 40
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804276
                     /organism="Thermococcus waiotapuensis"
                     /mol_type="genomic DNA"
                     /strain="WT1"
                     /isolation_source="sediment"
                     /culture_collection="JCM:10985"
                     /type_material="type strain of Thermococcus waiotapuensis"
                     /db_xref="taxon:90909"
                     /geo_loc_name="New Zealand: Champagne Pool, Waiotapu"
                     /lat_lon="38.358947 S 176.368927 E"
                     /collection_date="1992"
WGS         JAVDZE010000001-JAVDZE010000011
WGS_SCAFLD  NZ_JAVDZE010000001-NZ_JAVDZE010000011
//
LOCUS       NZ_JARFPL010000000   2444195 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Candidatus Methanocrinis alkalitolerans strain M04Ac, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARFPL000000000
VERSION     NZ_JARFPL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33591653
            Assembly: GCF_029167205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanocrinis alkalitolerans
  ORGANISM  Candidatus Methanocrinis alkalitolerans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae;
            Methanocrinis.
REFERENCE   1  (bases 1 to 2444195)
  AUTHORS   Khomyakova,M.A., Merkel,A.Y. and Slobodkin,A.I.
  TITLE     Whole genome sequencing of Methanotrichaceae archaeon M04Ac
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2444195)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARFPL000000000.1.
            The Candidatus Methanocrinis alkalitolerans whole genome shotgun
            (WGS) project has the project accession NZ_JARFPL000000000.  This
            version of the project (01) has the accession number
            NZ_JARFPL010000000, and consists of sequences
            JARFPL010000001-JARFPL010000096.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 240.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029167205.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:38:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,517
            CDSs (total)                      :: 2,464
            Genes (coding)                    :: 2,413
            CDSs (with protein)               :: 2,413
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 9 of 51
            Pseudo Genes (incomplete)         :: 43 of 51
            Pseudo Genes (internal stop)      :: 2 of 51
            Pseudo Genes (multiple problems)  :: 3 of 51
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444195
                     /organism="Candidatus Methanocrinis alkalitolerans"
                     /mol_type="genomic DNA"
                     /strain="M04Ac"
                     /isolation_source="terrestrial mud volcano"
                     /type_material="reference strain of Candidatus
                     Methanocrinis alkalitolerans"
                     /db_xref="taxon:3033395"
                     /geo_loc_name="Russia: Taman Peninsula"
                     /collection_date="2017-06"
WGS         JARFPL010000001-JARFPL010000096
WGS_SCAFLD  NZ_JARFPL010000001-NZ_JARFPL010000096
//
LOCUS       NZ_JARFPK010000000   2412901 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Candidatus Methanocrinis natronophilus strain Mx, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARFPK000000000
VERSION     NZ_JARFPK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33591156
            Assembly: GCF_029167045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanocrinis natronophilus
  ORGANISM  Candidatus Methanocrinis natronophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae;
            Methanocrinis.
REFERENCE   1  (bases 1 to 2412901)
  AUTHORS   Sorokin,D.Y. and Merkel,A.Y.
  TITLE     WGS of Methanotrichaceae archaeon Mx
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2412901)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARFPK000000000.1.
            The Candidatus Methanocrinis natronophilus whole genome shotgun
            (WGS) project has the project accession NZ_JARFPK000000000.  This
            version of the project (01) has the accession number
            NZ_JARFPK010000000, and consists of sequences
            JARFPK010000001-JARFPK010000100.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029167045.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:40:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,494
            CDSs (total)                      :: 2,446
            Genes (coding)                    :: 2,366
            CDSs (with protein)               :: 2,366
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 23 of 80
            Pseudo Genes (incomplete)         :: 63 of 80
            Pseudo Genes (internal stop)      :: 9 of 80
            Pseudo Genes (multiple problems)  :: 11 of 80
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2412901
                     /organism="Candidatus Methanocrinis natronophilus"
                     /mol_type="genomic DNA"
                     /strain="Mx"
                     /isolation_source="soda lake sediments"
                     /type_material="reference strain of Candidatus
                     Methanocrinis natronophilus"
                     /db_xref="taxon:3033396"
                     /geo_loc_name="Russia: Kulunda Steppe"
                     /collection_date="2013"
WGS         JARFPK010000001-JARFPK010000100
WGS_SCAFLD  NZ_JARFPK010000001-NZ_JARFPK010000100
//
LOCUS       NZ_JAFBBC010000000   1733513 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanococcus maripaludis strain RC, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFBBC000000000
VERSION     NZ_JAFBBC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17620118
            Assembly: GCF_016907005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1733513)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1733513)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFBBC000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JAFBBC000000000.  This version of the
            project (01) has the accession number NZ_JAFBBC010000000, and
            consists of sequences JAFBBC010000001-JAFBBC010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 865.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016907005.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:50:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,879
            CDSs (total)                      :: 1,836
            Genes (coding)                    :: 1,824
            CDSs (with protein)               :: 1,824
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 4 of 12
            Pseudo Genes (incomplete)         :: 7 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733513
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="RC"
                     /type_material="type strain of Methanococcus deltae Corder
                     et al. 1988"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: Gulf of Mexico"
WGS         JAFBBC010000001-JAFBBC010000004
WGS_SCAFLD  NZ_JAFBBC010000001-NZ_JAFBBC010000004
//
LOCUS       NZ_JAGGKQ010000000   3098171 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum alkaliphilum strain DSM 23564, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGKQ000000000
VERSION     NZ_JAGGKQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18245801
            Assembly: GCF_017873815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum alkaliphilum
  ORGANISM  Halorubrum alkaliphilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3098171)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3098171)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGKQ000000000.1.
            The Halorubrum alkaliphilum whole genome shotgun (WGS) project has
            the project accession NZ_JAGGKQ000000000.  This version of the
            project (01) has the accession number NZ_JAGGKQ010000000, and
            consists of sequences JAGGKQ010000001-JAGGKQ010000064.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 356.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017873815.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:00:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,115
            CDSs (total)                      :: 3,049
            Genes (coding)                    :: 2,981
            CDSs (with protein)               :: 2,981
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 11 of 68
            Pseudo Genes (incomplete)         :: 52 of 68
            Pseudo Genes (internal stop)      :: 12 of 68
            Pseudo Genes (multiple problems)  :: 7 of 68
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3098171
                     /organism="Halorubrum alkaliphilum"
                     /mol_type="genomic DNA"
                     /strain="DSM 23564"
                     /culture_collection="DSM:23564"
                     /type_material="type strain of Halorubrum alkaliphilum"
                     /db_xref="taxon:261290"
                     /geo_loc_name="China: Xin-Jiang, China"
                     /lat_lon="43.793 N 87.627 E"
WGS         JAGGKQ010000001-JAGGKQ010000064
WGS_SCAFLD  NZ_JAGGKQ010000001-NZ_JAGGKQ010000064
//
LOCUS       NZ_JAGGKR010000000   2662345 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanolinea mesophila strain DSM 23604, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGKR000000000
VERSION     NZ_JAGGKR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18245708
            Assembly: GCF_017873855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolinea mesophila
  ORGANISM  Methanolinea mesophila
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanolinea.
REFERENCE   1  (bases 1 to 2662345)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2662345)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGKR000000000.1.
            The Methanolinea mesophila whole genome shotgun (WGS) project has
            the project accession NZ_JAGGKR000000000.  This version of the
            project (01) has the accession number NZ_JAGGKR010000000, and
            consists of sequences JAGGKR010000001-JAGGKR010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 399.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017873855.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:56:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,570
            CDSs (total)                      :: 2,517
            Genes (coding)                    :: 2,515
            CDSs (with protein)               :: 2,515
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662345
                     /organism="Methanolinea mesophila"
                     /mol_type="genomic DNA"
                     /strain="DSM 23604"
                     /culture_collection="DSM:23604"
                     /type_material="type strain of Methanolinea mesophila"
                     /db_xref="taxon:547055"
WGS         JAGGKR010000001-JAGGKR010000002
WGS_SCAFLD  NZ_JAGGKR010000001-NZ_JAGGKR010000002
//
LOCUS       NZ_JAGGLC010000000   2752321 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halolamina salifodinae strain DSM 26232, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGLC000000000
VERSION     NZ_JAGGLC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18247528
            Assembly: GCF_017874235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina salifodinae
  ORGANISM  Halolamina salifodinae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2752321)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2752321)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGLC000000000.1.
            The Halolamina salifodinae whole genome shotgun (WGS) project has
            the project accession NZ_JAGGLC000000000.  This version of the
            project (01) has the accession number NZ_JAGGLC010000000, and
            consists of sequences JAGGLC010000001-JAGGLC010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 544.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017874235.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:00:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,892
            CDSs (total)                      :: 2,839
            Genes (coding)                    :: 2,798
            CDSs (with protein)               :: 2,798
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 10 of 41
            Pseudo Genes (incomplete)         :: 33 of 41
            Pseudo Genes (internal stop)      :: 4 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752321
                     /organism="Halolamina salifodinae"
                     /mol_type="genomic DNA"
                     /strain="DSM 26232"
                     /culture_collection="DSM:26232"
                     /type_material="type strain of Halolamina salifodinae"
                     /db_xref="taxon:1202767"
WGS         JAGGLC010000001-JAGGLC010000009
WGS_SCAFLD  NZ_JAGGLC010000001-NZ_JAGGLC010000009
//
LOCUS       NZ_JAFRSC010000000   2528624 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG2750, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFRSC000000000
VERSION     NZ_JAFRSC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16343217
            Assembly: GCF_017427765.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2528624)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2528624)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFRSC000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFRSC000000000.  This version of the
            project (01) has the accession number NZ_JAFRSC010000000, and
            consists of sequences JAFRSC010000001-JAFRSC010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017427765.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:53:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,497
            CDSs (total)                      :: 2,454
            Genes (coding)                    :: 2,439
            CDSs (with protein)               :: 2,439
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 13 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528624
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG2750"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="goat"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-10-12"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFRSC010000001-JAFRSC010000060
WGS_SCAFLD  NZ_JAFRSC010000001-NZ_JAFRSC010000060
//
LOCUS       NZ_JWHL01000000      2134029 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanocalculus chunghsingensis strain K1F9705b, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JWHL00000000
VERSION     NZ_JWHL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03254652
            Assembly: GCF_018132105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocalculus chunghsingensis
  ORGANISM  Methanocalculus chunghsingensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 2134029)
  AUTHORS   Huang,H.-H., Chen,S.-C. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2014) Life Sciences, National Chung Hsing
            University, 250 Kuo Kuang Rd, Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWHL00000000.1.
            The Methanocalculus chunghsingensis whole genome shotgun (WGS)
            project has the project accession NZ_JWHL00000000.  This version of
            the project (01) has the accession number NZ_JWHL01000000, and
            consists of sequences JWHL01000001-JWHL01000051.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLCbio v. MAY-2013
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 547.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018132105.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:54:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,297
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,218
            CDSs (with protein)               :: 2,218
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 3 of 25
            Pseudo Genes (incomplete)         :: 20 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134029
                     /organism="Methanocalculus chunghsingensis"
                     /mol_type="genomic DNA"
                     /strain="K1F9705b"
                     /isolation_source="fishpond sediment sample"
                     /type_material="type strain of Methanocalculus
                     chunghsingensis"
                     /db_xref="taxon:156457"
                     /geo_loc_name="Taiwan: Eriln Shi, Wong-gong"
                     /collection_date="2004"
WGS         JWHL01000001-JWHL01000051
WGS_SCAFLD  NZ_JWHL01000001-NZ_JWHL01000051
//
LOCUS       NZ_JAFYHP010000000   1837912 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate RGIG7098, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFYHP000000000
VERSION     NZ_JAFYHP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16347569
            Assembly: GCF_017539065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1837912)
  AUTHORS   Xie,F.
  TITLE     A highly-resolved spatial and functional map of the ruminant
            gastrointestinal microbiome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1837912)
  AUTHORS   Xie,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2020) Laboratory of Gastrointestinal
            Microbiology, Nanjing Agricultural University, Weigang NO. 1,
            Nanjing, Jiangsu 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFYHP000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAFYHP000000000.  This version of the
            project (01) has the accession number NZ_JAFYHP010000000, and
            consists of sequences JAFYHP010000001-JAFYHP010000031.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-AUG-2020
            Assembly Method        :: MEGAHIT v. v.1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017539065.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:52:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,827
            CDSs (total)                      :: 1,787
            Genes (coding)                    :: 1,781
            CDSs (with protein)               :: 1,781
            Genes (RNA)                       :: 40
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 6 of 6
            Pseudo Genes (internal stop)      :: 0 of 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837912
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="RGIG7098"
                     /isolation_source="ruminant gastrointestinal tract"
                     /host="water buffalo"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /collection_date="2018-11-20"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAFYHP010000001-JAFYHP010000031
WGS_SCAFLD  NZ_JAFYHP010000001-NZ_JAFYHP010000031
//
LOCUS       NZ_JAHDQB010000000   2089397 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanomethylovorans sp. isolate SM1-B9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHDQB000000000
VERSION     NZ_JAHDQB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16056141
            Assembly: GCF_018434035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanomethylovorans sp. (wastewater metagenome)
  ORGANISM  Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2089397)
  AUTHORS   Ewens,S.D., Gomberg,A.F.S., Barnum,T.P., Borton,M.A., Carlson,H.K.,
            Wrighton,K.C. and Coates,J.D.
  TITLE     The diversity and evolution of microbial dissimilatory phosphite
            oxidation
  JOURNAL   Proc Natl Acad Sci U S A 118 (11) (2021)
   PUBMED   33688048
REFERENCE   2  (bases 1 to 2089397)
  AUTHORS   Ewens,S.D. and Coates,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2021) Plant and Microbial Biology, University of
            California, Berkeley, 111 Koshland Hall, Berkeley, CA 94702-3102,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHDQB000000000.1.
            The Methanomethylovorans sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAHDQB000000000.  This version of the
            project (01) has the accession number NZ_JAHDQB010000000, and
            consists of sequences JAHDQB010000001-JAHDQB010000022.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2019
            Assembly Method        :: MEGAHIT v. V1.1.2
            Assembly Name          :: SM1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 8.18639918401x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018434035.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:58:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,047
            CDSs (total)                      :: 2,001
            Genes (coding)                    :: 1,992
            CDSs (with protein)               :: 1,992
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 3 of 9
            Pseudo Genes (incomplete)         :: 7 of 9
            Pseudo Genes (internal stop)      :: 3 of 9
            Pseudo Genes (multiple problems)  :: 3 of 9
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089397
                     /organism="Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="SM1-B9"
                     /isolation_source="wastewater sludge anaerobic digester
                     phosphite (DPO) enrichment"
                     /db_xref="taxon:2758717"
                     /environmental_sample
                     /geo_loc_name="USA: San Mateo, CA"
                     /lat_lon="37.568993 N 122.295758 W"
                     /collection_date="2018-01-29"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JAHDQB010000001-JAHDQB010000022
WGS_SCAFLD  NZ_JAHDQB010000001-NZ_JAHDQB010000022
//
LOCUS       NZ_JAGGLN010000000   2347771 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanobacterium aggregans strain DSM 29428, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGLN000000000
VERSION     NZ_JAGGLN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18248560
            Assembly: GCF_017874455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium aggregans
  ORGANISM  Methanobacterium aggregans
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2347771)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2347771)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGLN000000000.1.
            The Methanobacterium aggregans whole genome shotgun (WGS) project
            has the project accession NZ_JAGGLN000000000.  This version of the
            project (01) has the accession number NZ_JAGGLN010000000, and
            consists of sequences JAGGLN010000001-JAGGLN010000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 384.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017874455.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:56:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,309
            CDSs (total)                      :: 2,261
            Genes (coding)                    :: 2,249
            CDSs (with protein)               :: 2,249
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 2 of 12
            Pseudo Genes (incomplete)         :: 10 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347771
                     /organism="Methanobacterium aggregans"
                     /mol_type="genomic DNA"
                     /strain="DSM 29428"
                     /culture_collection="DSM:29428"
                     /type_material="type strain of Methanobacterium aggregans"
                     /db_xref="taxon:1615586"
WGS         JAGGLN010000001-JAGGLN010000016
WGS_SCAFLD  NZ_JAGGLN010000001-NZ_JAGGLN010000016
//
LOCUS       NZ_JAGGMM010000000   2541249 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanomicrobium sp. W14, whole genome shotgun sequencing project.
ACCESSION   NZ_JAGGMM000000000
VERSION     NZ_JAGGMM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18259159
            Assembly: GCF_017875315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomicrobium sp. W14
  ORGANISM  Methanomicrobium sp. W14
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanomicrobium.
REFERENCE   1  (bases 1 to 2541249)
  AUTHORS   Whitman,W.
  TITLE     Genome Encyclopedia of Bacteria and Archaea VI: Functional Genomics
            of Type Strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2541249)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGMM000000000.1.
            The Methanomicrobium sp. W14 whole genome shotgun (WGS) project has
            the project accession NZ_JAGGMM000000000.  This version of the
            project (01) has the accession number NZ_JAGGMM010000000, and
            consists of sequences JAGGMM010000001-JAGGMM010000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 502.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017875315.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:59:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,541
            CDSs (total)                      :: 2,486
            Genes (coding)                    :: 2,475
            CDSs (with protein)               :: 2,475
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 4 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2541249
                     /organism="Methanomicrobium sp. W14"
                     /mol_type="genomic DNA"
                     /strain="W14"
                     /db_xref="taxon:2817839"
WGS         JAGGMM010000001-JAGGMM010000006
WGS_SCAFLD  NZ_JAGGMM010000001-NZ_JAGGMM010000006
//
LOCUS       NZ_JAGGLK010000000   2116010 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanohalophilus levihalophilus strain DSM 28452, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAGGLK000000000
VERSION     NZ_JAGGLK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18247105
            Assembly: GCF_017874375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanohalophilus levihalophilus
  ORGANISM  Methanohalophilus levihalophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalophilus.
REFERENCE   1  (bases 1 to 2116010)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2116010)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGLK000000000.1.
            The Methanohalophilus levihalophilus whole genome shotgun (WGS)
            project has the project accession NZ_JAGGLK000000000.  This version
            of the project (01) has the accession number NZ_JAGGLK010000000,
            and consists of sequences JAGGLK010000001-JAGGLK010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 495.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017874375.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 14:54:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,267
            CDSs (total)                      :: 2,217
            Genes (coding)                    :: 2,198
            CDSs (with protein)               :: 2,198
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 1 of 19
            Pseudo Genes (incomplete)         :: 6 of 19
            Pseudo Genes (internal stop)      :: 14 of 19
            Pseudo Genes (multiple problems)  :: 2 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116010
                     /organism="Methanohalophilus levihalophilus"
                     /mol_type="genomic DNA"
                     /strain="DSM 28452"
                     /culture_collection="DSM:28452"
                     /type_material="type strain of Methanohalophilus
                     levihalophilus"
                     /db_xref="taxon:1431282"
WGS         JAGGLK010000001-JAGGLK010000005
WGS_SCAFLD  NZ_JAGGLK010000001-NZ_JAGGLK010000005
//
LOCUS       NZ_JAHDQM010000000   2939216 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanoculleus sp. isolate SM3-B2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHDQM000000000
VERSION     NZ_JAHDQM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16056152
            Assembly: GCF_018433835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (wastewater metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2939216)
  AUTHORS   Ewens,S.D., Gomberg,A.F.S., Barnum,T.P., Borton,M.A., Carlson,H.K.,
            Wrighton,K.C. and Coates,J.D.
  TITLE     The diversity and evolution of microbial dissimilatory phosphite
            oxidation
  JOURNAL   Proc Natl Acad Sci U S A 118 (11) (2021)
   PUBMED   33688048
REFERENCE   2  (bases 1 to 2939216)
  AUTHORS   Ewens,S.D. and Coates,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2021) Plant and Microbial Biology, University of
            California, Berkeley, 111 Koshland Hall, Berkeley, CA 94702-3102,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHDQM000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAHDQM000000000.  This version of the project
            (01) has the accession number NZ_JAHDQM010000000, and consists of
            sequences JAHDQM010000001-JAHDQM010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2019
            Assembly Method        :: MEGAHIT v. V1.1.2
            Assembly Name          :: SM3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.4165154775x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018433835.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:05:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,971
            CDSs (total)                      :: 2,919
            Genes (coding)                    :: 2,862
            CDSs (with protein)               :: 2,862
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 9 of 57
            Pseudo Genes (incomplete)         :: 50 of 57
            Pseudo Genes (internal stop)      :: 3 of 57
            Pseudo Genes (multiple problems)  :: 5 of 57
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2939216
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="SM3-B2"
                     /isolation_source="wastewater sludge anaerobic digester
                     phosphite (DPO) enrichment"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA: San Mateo, CA"
                     /lat_lon="37.568993 N 122.295758 W"
                     /collection_date="2018-01-29"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JAHDQM010000001-JAHDQM010000063
WGS_SCAFLD  NZ_JAHDQM010000001-NZ_JAHDQM010000063
//
LOCUS       NZ_JADJJX010000000   2501102 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanothrix sp. isolate EsbE_18-Q3-R3-47_BAT3C.140, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JADJJX000000000
VERSION     NZ_JADJJX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16425814
            Assembly: GCF_016706325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (activated sludge metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2501102)
  AUTHORS   Singleton,C.M., Petriglieri,F., Kristensen,J.M., Kirkegaard,R.H.,
            Michaelsen,T.Y., Andersen,M.H., Kondrotaite,Z., Karst,S.M.,
            Dueholm,M.S., Nielsen,P.H. and Albertsen,M.
  TITLE     Connecting structure to function with the recovery of over 1000
            high-quality metagenome-assembled genomes from activated sludge
            using long-read sequencing
  JOURNAL   Nat Commun 12 (1), 2009 (2021)
   PUBMED   33790294
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2501102)
  AUTHORS   Singleton,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2020) Department of Chemistry and Bioscience,
            Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADJJX000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JADJJX000000000.  This version of the project
            (01) has the accession number NZ_JADJJX010000000, and consists of
            sequences JADJJX010000001-JADJJX010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-APR-2020
            Assembly Method        :: CANU v. 1.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.801439x
            Sequencing Technology  :: Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016706325.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:04:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,570
            CDSs (total)                      :: 2,514
            Genes (coding)                    :: 2,409
            CDSs (with protein)               :: 2,409
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 70 of 105
            Pseudo Genes (incomplete)         :: 46 of 105
            Pseudo Genes (internal stop)      :: 15 of 105
            Pseudo Genes (multiple problems)  :: 22 of 105
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2501102
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="EsbE_18-Q3-R3-47_BAT3C.140"
                     /isolation_source="activated sludge from EsbE_18-Q3-R3-47"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark: Esbjerg E"
                     /lat_lon="55.458597 N 8.489092 E"
                     /collection_date="2018-08-29"
                     /metagenome_source="activated sludge metagenome"
                     /metagenomic
WGS         JADJJX010000001-JADJJX010000003
WGS_SCAFLD  NZ_JADJJX010000001-NZ_JADJJX010000003
//
LOCUS       NZ_JAGGMV010000000   1856223 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanococcus voltae strain C4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAGGMV000000000
VERSION     NZ_JAGGMV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18257927
            Assembly: GCF_017875565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus voltae
  ORGANISM  Methanococcus voltae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1856223)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1856223)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGMV000000000.1.
            The Methanococcus voltae whole genome shotgun (WGS) project has the
            project accession NZ_JAGGMV000000000.  This version of the project
            (01) has the accession number NZ_JAGGMV010000000, and consists of
            sequences JAGGMV010000001-JAGGMV010000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 780.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017875565.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:03:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,694
            CDSs (total)                      :: 1,650
            Genes (coding)                    :: 1,644
            CDSs (with protein)               :: 1,644
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 5 of 6
            Pseudo Genes (internal stop)      :: 1 of 6
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856223
                     /organism="Methanococcus voltae"
                     /mol_type="genomic DNA"
                     /strain="C4"
                     /db_xref="taxon:2188"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JAGGMV010000001-JAGGMV010000017
WGS_SCAFLD  NZ_JAGGMV010000001-NZ_JAGGMV010000017
//
LOCUS       NZ_JAHDKU010000000   2907346 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanoculleus sp. isolate LM3-B14.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHDKU000000000
VERSION     NZ_JAHDKU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16056000
            Assembly: GCF_018436745.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (wastewater metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2907346)
  AUTHORS   Ewens,S.D., Gomberg,A.F.S., Barnum,T.P., Borton,M.A., Carlson,H.K.,
            Wrighton,K.C. and Coates,J.D.
  TITLE     The diversity and evolution of microbial dissimilatory phosphite
            oxidation
  JOURNAL   Proc Natl Acad Sci U S A 118 (11) (2021)
   PUBMED   33688048
REFERENCE   2  (bases 1 to 2907346)
  AUTHORS   Ewens,S.D. and Coates,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2021) Plant and Microbial Biology, University of
            California, Berkeley, 111 Koshland Hall, Berkeley, CA 94702-3102,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHDKU000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAHDKU000000000.  This version of the project
            (01) has the accession number NZ_JAHDKU010000000, and consists of
            sequences JAHDKU010000001-JAHDKU010000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2019
            Assembly Method        :: MEGAHIT v. V1.1.2
            Assembly Name          :: LM3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45.8322736619x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018436745.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:08:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,965
            CDSs (total)                      :: 2,913
            Genes (coding)                    :: 2,851
            CDSs (with protein)               :: 2,851
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 10 of 62
            Pseudo Genes (incomplete)         :: 51 of 62
            Pseudo Genes (internal stop)      :: 5 of 62
            Pseudo Genes (multiple problems)  :: 4 of 62
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2907346
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="LM3-B14.1"
                     /isolation_source="wastewater sludge anaerobic digester
                     phosphite (DPO) enrichment"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="USA: Livermore, CA"
                     /lat_lon="37.690286 N 121.807385 W"
                     /collection_date="2018-01-29"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JAHDKU010000001-JAHDKU010000066
WGS_SCAFLD  NZ_JAHDKU010000001-NZ_JAHDKU010000066
//
LOCUS       NZ_JAGGKE010000000   3080988 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Halorubrum trapanicum strain DSM 12287, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGKE000000000
VERSION     NZ_JAGGKE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18245806
            Assembly: GCF_017873555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum trapanicum
  ORGANISM  Halorubrum trapanicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3080988)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3080988)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGKE000000000.1.
            The Halorubrum trapanicum whole genome shotgun (WGS) project has
            the project accession NZ_JAGGKE000000000.  This version of the
            project (01) has the accession number NZ_JAGGKE010000000, and
            consists of sequences JAGGKE010000001-JAGGKE010000030.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 426.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017873555.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:05:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,076
            CDSs (total)                      :: 3,020
            Genes (coding)                    :: 2,970
            CDSs (with protein)               :: 2,970
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 17 of 50
            Pseudo Genes (incomplete)         :: 33 of 50
            Pseudo Genes (internal stop)      :: 11 of 50
            Pseudo Genes (multiple problems)  :: 9 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3080988
                     /organism="Halorubrum trapanicum"
                     /mol_type="genomic DNA"
                     /strain="DSM 12287"
                     /culture_collection="DSM:12287"
                     /type_material="type strain of Halorubrum trapanicum"
                     /db_xref="taxon:29284"
WGS         JAGGKE010000001-JAGGKE010000030
WGS_SCAFLD  NZ_JAGGKE010000001-NZ_JAGGKE010000030
//
LOCUS       NZ_JAERQV010000000   3939578 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax volcanii strain ID76 - delta_ftsZ1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAERQV000000000
VERSION     NZ_JAERQV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16974886
            Assembly: GCF_018419995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3939578)
  AUTHORS   Liao,Y., Ithurbide,S., Evenhuis,C., Lowe,J. and Duggin,I.G.
  TITLE     Cell division in the archaeon Haloferax volcanii relies on two FtsZ
            proteins with distinct functions in division ring assembly and
            constriction
  JOURNAL   Nat Microbiol 6 (5), 594-605 (2021)
   PUBMED   33903747
REFERENCE   2  (bases 1 to 3939578)
  AUTHORS   Liao,Y., Ithurbide,S., Evenhuis,C., Lowe,J., Duggin,I.G., Liu,M.
            and Anantanawat,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2021) ithree Institute, University of Technology
            Sydney, PO Box 123, Ultimo, NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAERQV000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JAERQV000000000.  This version of the project
            (01) has the accession number NZ_JAERQV010000000, and consists of
            sequences JAERQV010000001-JAERQV010000121.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-JUN-2018
            Assembly Method        :: A5 Assembler v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018419995.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:10:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,044
            CDSs (total)                      :: 3,987
            Genes (coding)                    :: 3,828
            CDSs (with protein)               :: 3,828
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 55 of 159
            Pseudo Genes (incomplete)         :: 106 of 159
            Pseudo Genes (internal stop)      :: 22 of 159
            Pseudo Genes (multiple problems)  :: 20 of 159
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3939578
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="ID76 - delta_ftsZ1"
                     /db_xref="taxon:2246"
                     /geo_loc_name="Australia: Sydney"
                     /collection_date="2018-06-04"
                     /collected_by="Yan Liao"
WGS         JAERQV010000001-JAERQV010000121
WGS_SCAFLD  NZ_JAERQV010000001-NZ_JAERQV010000121
//
LOCUS       NZ_JAERQX010000000   3936564 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax volcanii strain ID112 - delta_ftsZ1_delta_ftsZ2, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAERQX000000000
VERSION     NZ_JAERQX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16974888
            Assembly: GCF_018420065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3936564)
  AUTHORS   Liao,Y., Ithurbide,S., Evenhuis,C., Lowe,J. and Duggin,I.G.
  TITLE     Cell division in the archaeon Haloferax volcanii relies on two FtsZ
            proteins with distinct functions in division ring assembly and
            constriction
  JOURNAL   Nat Microbiol 6 (5), 594-605 (2021)
   PUBMED   33903747
REFERENCE   2  (bases 1 to 3936564)
  AUTHORS   Liao,Y., Ithurbide,S., Evenhuis,C., Lowe,J., Duggin,I.G., Liu,M.
            and Anantanawat,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2021) ithree Institute, University of Technology
            Sydney, PO Box 123, Ultimo, NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAERQX000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JAERQX000000000.  This version of the project
            (01) has the accession number NZ_JAERQX010000000, and consists of
            sequences JAERQX010000001-JAERQX010000116.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-JUN-2018
            Assembly Method        :: A5 Assembler v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018420065.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:10:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,035
            CDSs (total)                      :: 3,978
            Genes (coding)                    :: 3,828
            CDSs (with protein)               :: 3,828
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 53 of 150
            Pseudo Genes (incomplete)         :: 97 of 150
            Pseudo Genes (internal stop)      :: 22 of 150
            Pseudo Genes (multiple problems)  :: 18 of 150
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3936564
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="ID112 - delta_ftsZ1_delta_ftsZ2"
                     /db_xref="taxon:2246"
                     /geo_loc_name="Australia: Sydney"
                     /collection_date="2018-06-04"
                     /collected_by="Yan Liao"
WGS         JAERQX010000001-JAERQX010000116
WGS_SCAFLD  NZ_JAERQX010000001-NZ_JAERQX010000116
//
LOCUS       NZ_WBKO01000000      2617102 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Methanoculleus caldifontis strain Wushi-C6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WBKO00000000
VERSION     NZ_WBKO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12878181
            Assembly: GCF_032842345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus caldifontis
  ORGANISM  Methanoculleus caldifontis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2617102)
  AUTHORS   Chen,S.-C., Lan,Z.-H., You,Y.-T. and Lai,M.-C.
  TITLE     Isolation and characterization of Methanoculleus sp. Wushi-C6 from
            a hot spring well
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2617102)
  AUTHORS   Chen,S.-C., Lan,Z.-H., You,Y.-T. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WBKO00000000.1.
            The Methanoculleus caldifontis whole genome shotgun (WGS) project
            has the project accession NZ_WBKO00000000.  This version of the
            project (01) has the accession number NZ_WBKO01000000, and consists
            of sequences WBKO01000001-WBKO01000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Department of Life Sciences,
            National Chung Hsing University, Taichung, Taiwan; PI: Prof.
            Mei-Chin Lai.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 03-SEP-2019
            Assembly Method        :: shovill (FLASH/SPAdes/Pilon pipeline) v.
                                      Sep-2019
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 380.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032842345.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:22:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,621
            CDSs (total)                      :: 2,563
            Genes (coding)                    :: 2,554
            CDSs (with protein)               :: 2,554
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 1 of 9
            Pseudo Genes (incomplete)         :: 8 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617102
                     /organism="Methanoculleus caldifontis"
                     /mol_type="genomic DNA"
                     /strain="Wushi-C6"
                     /isolation_source="soil of a hot spring well"
                     /db_xref="taxon:2651577"
                     /geo_loc_name="Taiwan: Yilang County"
                     /lat_lon="24.861275 N 121.830822 E"
                     /collection_date="2015-03-14"
                     /collected_by="Sheng-Chung Chen"
                     /identified_by="Sheng-Chung Chen"
WGS         WBKO01000001-WBKO01000004
WGS_SCAFLD  NZ_WBKO01000001-NZ_WBKO01000004
//
LOCUS       NZ_JAHDMI010000000   2365947 bp    DNA     linear   ENV 23-OCT-2024
DEFINITION  MAG: Methanothrix sp. isolate R1-B15.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHDMI000000000
VERSION     NZ_JAHDMI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16056042
            Assembly: GCF_018436085.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (wastewater metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2365947)
  AUTHORS   Ewens,S.D., Gomberg,A.F.S., Barnum,T.P., Borton,M.A., Carlson,H.K.,
            Wrighton,K.C. and Coates,J.D.
  TITLE     The diversity and evolution of microbial dissimilatory phosphite
            oxidation
  JOURNAL   Proc Natl Acad Sci U S A 118 (11) (2021)
   PUBMED   33688048
REFERENCE   2  (bases 1 to 2365947)
  AUTHORS   Ewens,S.D. and Coates,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2021) Plant and Microbial Biology, University of
            California, Berkeley, 111 Koshland Hall, Berkeley, CA 94702-3102,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHDMI000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAHDMI000000000.  This version of the project
            (01) has the accession number NZ_JAHDMI010000000, and consists of
            sequences JAHDMI010000001-JAHDMI010000095.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2019
            Assembly Method        :: MEGAHIT v. V1.1.2
            Assembly Name          :: R1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.56236833x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018436085.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:25:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,396
            CDSs (total)                      :: 2,345
            Genes (coding)                    :: 2,297
            CDSs (with protein)               :: 2,297
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 13 of 48
            Pseudo Genes (incomplete)         :: 43 of 48
            Pseudo Genes (internal stop)      :: 6 of 48
            Pseudo Genes (multiple problems)  :: 11 of 48
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365947
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="R1-B15.1"
                     /isolation_source="wastewater sludge anaerobic digester
                     phosphite (DPO) enrichment"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="USA: Richmond, CA"
                     /lat_lon="37.920414 N 122.378317 W"
                     /collection_date="2018-01-31"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JAHDMI010000001-JAHDMI010000095
WGS_SCAFLD  NZ_JAHDMI010000001-NZ_JAHDMI010000095
//
LOCUS       NZ_JAERQU010000000   3940033 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloferax volcanii strain H98, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAERQU000000000
VERSION     NZ_JAERQU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16974885
            Assembly: GCF_018420055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3940033)
  AUTHORS   Liao,Y., Ithurbide,S., Evenhuis,C., Lowe,J. and Duggin,I.G.
  TITLE     Cell division in the archaeon Haloferax volcanii relies on two FtsZ
            proteins with distinct functions in division ring assembly and
            constriction
  JOURNAL   Nat Microbiol 6 (5), 594-605 (2021)
   PUBMED   33903747
REFERENCE   2  (bases 1 to 3940033)
  AUTHORS   Liao,Y., Ithurbide,S., Evenhuis,C., Lowe,J., Duggin,I.G., Liu,M.
            and Anantanawat,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2021) ithree Institute, University of Technology
            Sydney, PO Box 123, Ultimo, NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAERQU000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JAERQU000000000.  This version of the project
            (01) has the accession number NZ_JAERQU010000000, and consists of
            sequences JAERQU010000001-JAERQU010000119.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-JUN-2018
            Assembly Method        :: A5 Assembler v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018420055.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:11:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,044
            CDSs (total)                      :: 3,986
            Genes (coding)                    :: 3,831
            CDSs (with protein)               :: 3,831
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 53 of 155
            Pseudo Genes (incomplete)         :: 102 of 155
            Pseudo Genes (internal stop)      :: 22 of 155
            Pseudo Genes (multiple problems)  :: 18 of 155
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940033
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="H98"
                     /db_xref="taxon:2246"
                     /geo_loc_name="Australia: Sydney"
                     /collection_date="2018-06-04"
                     /collected_by="Yan Liao"
WGS         JAERQU010000001-JAERQU010000119
WGS_SCAFLD  NZ_JAERQU010000001-NZ_JAERQU010000119
//
LOCUS       NZ_JAHQXE010000000   3798620 bp    DNA     linear   BCT 23-OCT-2024
DEFINITION  Haloarcula salina strain JCM 18369, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAHQXE000000000
VERSION     NZ_JAHQXE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19844807
            Assembly: GCF_019061225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula salina
  ORGANISM  Haloarcula salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3798620)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C.S. and Ventosa,A.
  TITLE     New haloarchaea isolates fom saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3798620)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C.S. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2021) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHQXE000000000.1.
            The Haloarcula salina whole genome shotgun (WGS) project has the
            project accession NZ_JAHQXE000000000.  This version of the project
            (01) has the accession number NZ_JAHQXE010000000, and consists of
            sequences JAHQXE010000001-JAHQXE010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 510.672x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019061225.1-RS_2024_10_23
            Annotation Date                   :: 10/23/2024 15:14:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,895
            CDSs (total)                      :: 3,843
            Genes (coding)                    :: 3,825
            CDSs (with protein)               :: 3,825
            Genes (RNA)                       :: 52
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 11 of 18
            Pseudo Genes (incomplete)         :: 9 of 18
            Pseudo Genes (internal stop)      :: 5 of 18
            Pseudo Genes (multiple problems)  :: 6 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798620
                     /organism="Haloarcula salina"
                     /mol_type="genomic DNA"
                     /strain="JCM 18369"
                     /isolation_source="saline soil"
                     /culture_collection="JCM:18369"
                     /type_material="type strain of Halomicroarcula salina"
                     /db_xref="taxon:1429914"
                     /geo_loc_name="Japan"
                     /collection_date="2019"
WGS         JAHQXE010000001-JAHQXE010000011
WGS_SCAFLD  NZ_JAHQXE010000001-NZ_JAHQXE010000011
//
LOCUS       NZ_CAXXMK010000000   3328399 bp    DNA     linear   ENV 25-OCT-2024
DEFINITION  MAG: uncultured Methanomethylovorans sp. isolate
            1bea500b-d65c-4789-84bd-533d56c43360, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAXXMK000000000
VERSION     NZ_CAXXMK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114407642
            Sequence Read Archive: ERR12015714, ERR12035219
            Assembly: GCF_963678545.2
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanomethylovorans sp. (ciliate metagenome)
  ORGANISM  uncultured Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans; environmental samples.
REFERENCE   1  (bases 1 to 3328399)
  CONSRTM   Wellcome Sanger Tree of Life Programme
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2024) WELLCOME SANGER INSTITUTE, Tree of Life,
            Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAXXMK000000000.1.
            The uncultured Methanomethylovorans sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAXXMK000000000.  This version
            of the project (01) has the accession number NZ_CAXXMK010000000,
            and consists of sequences CAXXMK010000001-CAXXMK010000003.
            The metagenome-assembled genome assembly
            piPlaSpea1.Methanomethylovorans_sp_1.2 is based on 9x PacBio data
            and Arima Hi-C data generated by the Aquatic Symbiosis Genomics
            Project (https://www.aquaticsymbiosisgenomics.org/). The assembly
            process included the following sequence of steps: initial PacBio
            assembly generation with metaMDBG and coverage-, graph-, and
            HiC-based contig binning.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963678545.2-RS_2024_10_25
            Annotation Date                   :: 10/25/2024 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,285
            CDSs (total)                      :: 3,223
            Genes (coding)                    :: 3,164
            CDSs (with protein)               :: 3,164
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 23 of 59
            Pseudo Genes (incomplete)         :: 31 of 59
            Pseudo Genes (internal stop)      :: 19 of 59
            Pseudo Genes (multiple problems)  :: 12 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328399
                     /organism="uncultured Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="1bea500b-d65c-4789-84bd-533d56c43360"
                     /isolation_source="Ciliate: Plagiopyla sp. strain OYSTR"
                     /db_xref="taxon:183759"
                     /environmental_sample
                     /metagenome_source="ciliate metagenome"
                     /metagenomic
WGS         CAXXMK010000001-CAXXMK010000003
WGS_SCAFLD  NZ_CAXXMK010000001-NZ_CAXXMK010000003
WGS_SCAFLD  NZ_OY782867
WGS_SCAFLD  OY782867
//
LOCUS       NZ_CAXXKW010000000   3380489 bp    DNA     linear   ENV 25-OCT-2024
DEFINITION  MAG: uncultured Methanolobus sp. isolate
            63462039-51cf-4655-9c85-af1f4e349c88, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAXXKW000000000
VERSION     NZ_CAXXKW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114503743
            Sequence Read Archive: ERR12015712, ERR12035216
            Assembly: GCF_963674485.2
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanolobus sp. (ciliate metagenome)
  ORGANISM  uncultured Methanolobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus; environmental samples.
REFERENCE   1  (bases 1 to 3380489)
  CONSRTM   Wellcome Sanger Tree of Life Programme
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2024) WELLCOME SANGER INSTITUTE, Tree of Life,
            Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAXXKW000000000.1.
            The uncultured Methanolobus sp. whole genome shotgun (WGS) project
            has the project accession NZ_CAXXKW000000000.  This version of the
            project (01) has the accession number NZ_CAXXKW010000000, and
            consists of sequences CAXXKW010000001-CAXXKW010000002.
            The metagenome-assembled genome assembly
            piMetSpef1.Methanolobus_sp_1.2 is based on 16x PacBio data and
            Arima Hi-C data generated by the Aquatic Symbiosis Genomics Project
            (https://www.aquaticsymbiosisgenomics.org/). The assembly process
            included the following sequence of steps: initial PacBio assembly
            generation with metaMDBG and coverage-, graph-, and HiC-based
            contig binning.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963674485.2-RS_2024_10_25
            Annotation Date                   :: 10/25/2024 00:07:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,428
            CDSs (total)                      :: 3,353
            Genes (coding)                    :: 3,273
            CDSs (with protein)               :: 3,273
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 43 of 80
            Pseudo Genes (incomplete)         :: 36 of 80
            Pseudo Genes (internal stop)      :: 22 of 80
            Pseudo Genes (multiple problems)  :: 14 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380489
                     /organism="uncultured Methanolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="63462039-51cf-4655-9c85-af1f4e349c88"
                     /isolation_source="Ciliate: Metopus sp. strain NARRIV"
                     /db_xref="taxon:218300"
                     /environmental_sample
                     /metagenome_source="ciliate metagenome"
                     /metagenomic
WGS         CAXXKW010000001-CAXXKW010000002
WGS_SCAFLD  NZ_CAXXKW010000001-NZ_CAXXKW010000002
//
LOCUS       NZ_CAXXDL010000000   3962511 bp    DNA     linear   ENV 25-OCT-2024
DEFINITION  MAG: uncultured Methanospirillum sp. isolate
            8eaa7107-24d2-47ef-b272-b65bd02509cd, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAXXDL000000000
VERSION     NZ_CAXXDL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114301968
            Sequence Read Archive: ERR12015702, ERR12015703
            Assembly: GCF_963668415.2
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanospirillum sp. (ciliate metagenome)
  ORGANISM  uncultured Methanospirillum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum; environmental samples.
REFERENCE   1  (bases 1 to 3962511)
  CONSRTM   Wellcome Sanger Tree of Life Programme
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2024) WELLCOME SANGER INSTITUTE, Tree of Life,
            Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAXXDL000000000.1.
            The uncultured Methanospirillum sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAXXDL000000000.  This version
            of the project (01) has the accession number NZ_CAXXDL010000000,
            and consists of sequences CAXXDL010000001-CAXXDL010000002.
            The metagenome-assembled genome assembly
            piHetPala1.Methanospirillum_sp_1.2 is based on 34x PacBio data
            generated by the Aquatic Symbiosis Genomics Project
            (https://www.aquaticsymbiosisgenomics.org/). The assembly process
            included the following sequence of steps: initial PacBio assembly
            generation with metaMDBG and coverage-, graph-, and HiC-based
            contig binning.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963668415.2-RS_2024_10_25
            Annotation Date                   :: 10/25/2024 00:09:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,735
            CDSs (total)                      :: 3,656
            Genes (coding)                    :: 3,614
            CDSs (with protein)               :: 3,614
            Genes (RNA)                       :: 79
            rRNAs                             :: 9, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 12 of 42
            Pseudo Genes (incomplete)         :: 24 of 42
            Pseudo Genes (internal stop)      :: 12 of 42
            Pseudo Genes (multiple problems)  :: 6 of 42
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3962511
                     /organism="uncultured Methanospirillum sp."
                     /mol_type="genomic DNA"
                     /isolate="8eaa7107-24d2-47ef-b272-b65bd02509cd"
                     /isolation_source="Ciliate: Heterometopus palaeformis"
                     /db_xref="taxon:262503"
                     /environmental_sample
                     /metagenome_source="ciliate metagenome"
                     /metagenomic
WGS         CAXXDL010000001-CAXXDL010000002
WGS_SCAFLD  NZ_CAXXDL010000001-NZ_CAXXDL010000002
//
LOCUS       NZ_CAXXIR010000000   3113664 bp    DNA     linear   ENV 25-OCT-2024
DEFINITION  MAG: uncultured Methanoregula sp. isolate
            257634c3-eba2-4640-81e3-9cf097619cc2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAXXIR000000000
VERSION     NZ_CAXXIR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114409878
            Sequence Read Archive: ERR12015718, ERR12035223
            Assembly: GCF_963678795.2
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanoregula sp. (ciliate metagenome)
  ORGANISM  uncultured Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula; environmental samples.
REFERENCE   1  (bases 1 to 3113664)
  CONSRTM   Wellcome Sanger Tree of Life Programme
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2024) WELLCOME SANGER INSTITUTE, Tree of Life,
            Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAXXIR000000000.1.
            The uncultured Methanoregula sp. whole genome shotgun (WGS) project
            has the project accession NZ_CAXXIR000000000.  This version of the
            project (01) has the accession number NZ_CAXXIR010000000, and
            consists of sequences CAXXIR010000001-CAXXIR010000002.
            The metagenome-assembled genome assembly
            piUroStri2.Methanoregula_sp_2.2 is based on 20x PacBio data and
            Arima Hi-C data generated by the Aquatic Symbiosis Genomics Project
            (https://www.aquaticsymbiosisgenomics.org/). The assembly process
            included the following sequence of steps: initial PacBio assembly
            generation with metaMDBG and coverage-, graph-, and HiC-based
            contig binning.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963678795.2-RS_2024_10_25
            Annotation Date                   :: 10/25/2024 00:12:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,971
            CDSs (total)                      :: 2,918
            Genes (coding)                    :: 2,900
            CDSs (with protein)               :: 2,900
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 7 of 18
            Pseudo Genes (incomplete)         :: 11 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            Pseudo Genes (multiple problems)  :: 2 of 18
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113664
                     /organism="uncultured Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="257634c3-eba2-4640-81e3-9cf097619cc2"
                     /isolation_source="Ciliate: Urostomides striatus"
                     /db_xref="taxon:1005933"
                     /environmental_sample
                     /metagenome_source="ciliate metagenome"
                     /metagenomic
WGS         CAXXIR010000001-CAXXIR010000002
WGS_SCAFLD  NZ_CAXXIR010000001-NZ_CAXXIR010000002
//
LOCUS       NZ_CAXXRN010000000   3226019 bp    DNA     linear   ENV 25-OCT-2024
DEFINITION  MAG: uncultured Methanobacterium sp. isolate
            ac387dc6-a7b2-4ec9-b929-065393db3f1a, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAXXRN000000000
VERSION     NZ_CAXXRN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114301965
            Sequence Read Archive: ERR12015702, ERR12015703
            Assembly: GCF_963665055.2
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanobacterium sp. (ciliate metagenome)
  ORGANISM  uncultured Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium; environmental samples.
REFERENCE   1  (bases 1 to 3226019)
  CONSRTM   Wellcome Sanger Tree of Life Programme
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2024) WELLCOME SANGER INSTITUTE, Tree of Life,
            Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAXXRN000000000.1.
            The uncultured Methanobacterium sp. whole genome shotgun (WGS)
            project has the project accession NZ_CAXXRN000000000.  This version
            of the project (01) has the accession number NZ_CAXXRN010000000,
            and consists of sequences CAXXRN010000001-CAXXRN010000011.
            The metagenome-assembled genome assembly
            piHetPala1.Methanobacterium_sp_1.2 is based on 13x PacBio data
            generated by the Aquatic Symbiosis Genomics Project
            (https://www.aquaticsymbiosisgenomics.org/). The assembly process
            included the following sequence of steps: initial PacBio assembly
            generation with metaMDBG and coverage-, graph-, and HiC-based
            contig binning.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963665055.2-RS_2024_10_25
            Annotation Date                   :: 10/25/2024 00:04:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,006
            CDSs (total)                      :: 2,949
            Genes (coding)                    :: 2,927
            CDSs (with protein)               :: 2,927
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 14 of 22
            Pseudo Genes (incomplete)         :: 8 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226019
                     /organism="uncultured Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="ac387dc6-a7b2-4ec9-b929-065393db3f1a"
                     /isolation_source="Ciliate: Heterometopus palaeformis"
                     /db_xref="taxon:176306"
                     /environmental_sample
                     /metagenome_source="ciliate metagenome"
                     /metagenomic
WGS         CAXXRN010000001-CAXXRN010000011
WGS_SCAFLD  NZ_CAXXRN010000001-NZ_CAXXRN010000011
//
LOCUS       NZ_CAXXTT010000000   3515989 bp    DNA     linear   ENV 25-OCT-2024
DEFINITION  MAG: uncultured Methanolobus sp. isolate
            82c844d6-9b60-41bf-bd6e-2fdc373d5e6f, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAXXTT000000000
VERSION     NZ_CAXXTT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114406603
            Sequence Read Archive: ERR12015704, ERR12015705
            Assembly: GCF_963665675.2
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      uncultured Methanolobus sp. (ciliate metagenome)
  ORGANISM  uncultured Methanolobus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus; environmental samples.
REFERENCE   1  (bases 1 to 3515989)
  CONSRTM   Wellcome Sanger Tree of Life Programme
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2024) WELLCOME SANGER INSTITUTE, Tree of Life,
            Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAXXTT000000000.1.
            The uncultured Methanolobus sp. whole genome shotgun (WGS) project
            has the project accession NZ_CAXXTT000000000.  This version of the
            project (01) has the accession number NZ_CAXXTT010000000, and
            consists of sequences CAXXTT010000001-CAXXTT010000002.
            The metagenome-assembled genome assembly
            piMetPara1.Methanolobus_sp_1.2 is based on 10x PacBio data
            generated by the Aquatic Symbiosis Genomics Project
            (https://www.aquaticsymbiosisgenomics.org/). The assembly process
            included the following sequence of steps: initial PacBio assembly
            generation with metaMDBG and coverage-, graph-, and HiC-based
            contig binning.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963665675.2-RS_2024_10_25
            Annotation Date                   :: 10/25/2024 00:07:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,244
            CDSs (total)                      :: 3,180
            Genes (coding)                    :: 3,125
            CDSs (with protein)               :: 3,125
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 11 of 55
            Pseudo Genes (incomplete)         :: 38 of 55
            Pseudo Genes (internal stop)      :: 8 of 55
            Pseudo Genes (multiple problems)  :: 2 of 55
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3515989
                     /organism="uncultured Methanolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="82c844d6-9b60-41bf-bd6e-2fdc373d5e6f"
                     /isolation_source="Ciliate: Metopus paraes"
                     /db_xref="taxon:218300"
                     /environmental_sample
                     /metagenome_source="ciliate metagenome"
                     /metagenomic
WGS         CAXXTT010000001-CAXXTT010000002
WGS_SCAFLD  NZ_CAXXTT010000001-NZ_CAXXTT010000002
//
LOCUS       NZ_JBHLJR010000000   4342625 bp    DNA     linear   BCT 25-OCT-2024
DEFINITION  Natronococcus roseus strain CGMCC 1.38198, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHLJR000000000
VERSION     NZ_JBHLJR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43869310
            Assembly: GCF_043677095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronococcus roseus
  ORGANISM  Natronococcus roseus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 4342625)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHLJR000000000.1.
            The Natronococcus roseus whole genome shotgun (WGS) project has the
            project accession NZ_JBHLJR000000000.  This version of the project
            (01) has the accession number NZ_JBHLJR010000000, and consists of
            sequences JBHLJR010000001-JBHLJR010000021.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 500.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_043677095.1-RS_2024_10_24
            Annotation Date                   :: 10/24/2024 13:10:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,406
            CDSs (total)                      :: 4,345
            Genes (coding)                    :: 4,259
            CDSs (with protein)               :: 4,259
            Genes (RNA)                       :: 61
            rRNAs                             :: 5, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 41 of 86
            Pseudo Genes (incomplete)         :: 57 of 86
            Pseudo Genes (internal stop)      :: 22 of 86
            Pseudo Genes (multiple problems)  :: 26 of 86
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4342625
                     /organism="Natronococcus roseus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.38198"
                     /isolation_source="sediment"
                     /db_xref="taxon:1052014"
                     /geo_loc_name="China"
                     /collection_date="2017-08"
WGS         JBHLJR010000001-JBHLJR010000021
WGS_SCAFLD  NZ_JBHLJR010000001-NZ_JBHLJR010000021
//
LOCUS       NZ_JABFFQ010000000   2629892 bp    DNA     linear   BCT 25-OCT-2024
DEFINITION  Methanoculleus nereidis strain YWC-01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABFFQ000000000
VERSION     NZ_JABFFQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14851478
            Assembly: GCF_032944295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus nereidis
  ORGANISM  Methanoculleus nereidis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2629892)
  AUTHORS   Chen,Y.-W., Chen,S.-C. and Lai,M.-C.
  TITLE     Isolation and characterization of methanoarchaea from a cold seep
            at offshore SW Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2629892)
  AUTHORS   Chen,Y.-W., Chen,S.-C. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABFFQ000000000.1.
            The Methanoculleus nereidis whole genome shotgun (WGS) project has
            the project accession NZ_JABFFQ000000000.  This version of the
            project (01) has the accession number NZ_JABFFQ010000000, and
            consists of sequences JABFFQ010000001-JABFFQ010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Prof. Mei-Chin Lai;
            Department of Life Sciences, National Chung Hsing University,
            Taichung, Taiwan.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 06-MAR-2020
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 568.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032944295.1-RS_2024_10_25
            Annotation Date                   :: 10/25/2024 14:35:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,696
            CDSs (total)                      :: 2,644
            Genes (coding)                    :: 2,628
            CDSs (with protein)               :: 2,628
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 3 of 16
            Pseudo Genes (incomplete)         :: 13 of 16
            Pseudo Genes (internal stop)      :: 0 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629892
                     /organism="Methanoculleus nereidis"
                     /mol_type="genomic DNA"
                     /strain="YWC-01"
                     /isolation_source="cold seep marine sediment"
                     /type_material="type strain of Methanoculleus nereidis"
                     /db_xref="taxon:2735141"
                     /geo_loc_name="Taiwan: offshore southwestern Taiwan"
                     /lat_lon="22.1532 N 119.8694 E"
                     /collection_date="2017-05-10"
                     /collected_by="ORI-1163 cruise"
                     /identified_by="Yu-Wei Chen"
WGS         JABFFQ010000001-JABFFQ010000026
WGS_SCAFLD  NZ_JABFFQ010000001-NZ_JABFFQ010000026
//
LOCUS       NZ_LWMS01000000      1881477 bp    DNA     linear   BCT 26-OCT-2024
DEFINITION  Methanosphaera cuniculi strain DSM 4103, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LWMS00000000
VERSION     NZ_LWMS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04867342
            Assembly: GCF_003149675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosphaera cuniculi
  ORGANISM  Methanosphaera cuniculi
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1881477)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Genome sequence of Methanosphaera cuniculi DSM 4103
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1881477)
  AUTHORS   Poehlein,A., Seedorf,H. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2016) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisenachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWMS00000000.1.
            The Methanosphaera cuniculi whole genome shotgun (WGS) project has
            the project accession NZ_LWMS00000000.  This version of the project
            (01) has the accession number NZ_LWMS01000000, and consists of
            sequences LWMS01000001-LWMS01000048.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.0
            Genome Coverage       :: 566x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003149675.1-RS_2024_10_26
            Annotation Date                   :: 10/26/2024 13:55:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,656
            CDSs (total)                      :: 1,599
            Genes (coding)                    :: 1,587
            CDSs (with protein)               :: 1,587
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 6, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 2 of 12
            Pseudo Genes (incomplete)         :: 10 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881477
                     /organism="Methanosphaera cuniculi"
                     /mol_type="genomic DNA"
                     /strain="DSM 4103"
                     /isolation_source="intestinal tract"
                     /host="rabbit"
                     /culture_collection="DSM:4103"
                     /type_material="type strain of Methanosphaera cuniculi"
                     /db_xref="taxon:1077256"
WGS         LWMS01000001-LWMS01000048
WGS_SCAFLD  NZ_LWMS01000001-NZ_LWMS01000048
//
LOCUS       NZ_JBIOAW010000000   5548315 bp    DNA     linear   BCT 29-OCT-2024
DEFINITION  Haladaptatus sp. CMAA 1911, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBIOAW000000000
VERSION     NZ_JBIOAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44050744
            Assembly: GCF_043952035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. CMAA 1911
  ORGANISM  Haladaptatus sp. CMAA 1911
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 5548315)
  AUTHORS   Ventura,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2024) Microbiology, Embrapa / ESALQ - USP,
            SP-340, KM 127 - S/N - Chacara Panorama, Jaguariuna, Sao Paulo
            13918-110, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBIOAW000000000.1.
            The Haladaptatus sp. CMAA 1911 whole genome shotgun (WGS) project
            has the project accession NZ_JBIOAW000000000.  This version of the
            project (01) has the accession number NZ_JBIOAW010000000, and
            consists of sequences JBIOAW010000001-JBIOAW010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-JAN-2024
            Assembly Method        :: Unicycler v. v0.5.1
            Assembly Name          :: CMAA 1911
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.5x
            Sequencing Technology  :: Illumina MiniSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_043952035.1-RS_2024_10_28
            Annotation Date                   :: 10/28/2024 13:00:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,640
            CDSs (total)                      :: 5,576
            Genes (coding)                    :: 5,460
            CDSs (with protein)               :: 5,460
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 35 of 116
            Pseudo Genes (incomplete)         :: 71 of 116
            Pseudo Genes (internal stop)      :: 28 of 116
            Pseudo Genes (multiple problems)  :: 17 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5548315
                     /organism="Haladaptatus sp. CMAA 1911"
                     /mol_type="genomic DNA"
                     /strain="CMAA 1911"
                     /isolation_source="rhizospheric soil"
                     /host="Atriplex nummularia"
                     /db_xref="taxon:3368987"
                     /geo_loc_name="Brazil: Petrolina, PE"
                     /collection_date="2019-12-17"
WGS         JBIOAW010000001-JBIOAW010000009
WGS_SCAFLD  NZ_JBIOAW010000001-NZ_JBIOAW010000009
//
LOCUS       NZ_JBIOAV010000000   5658424 bp    DNA     linear   BCT 29-OCT-2024
DEFINITION  Haladaptatus sp. CMAA 1909, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBIOAV000000000
VERSION     NZ_JBIOAV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44050743
            Assembly: GCF_043952005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. CMAA 1909
  ORGANISM  Haladaptatus sp. CMAA 1909
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 5658424)
  AUTHORS   Ventura,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2024) Microbiology, Embrapa / ESALQ - USP,
            SP-340, KM 127 - S/N - Chacara Panorama, Jaguariuna, Sao Paulo
            13918-110, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBIOAV000000000.1.
            The Haladaptatus sp. CMAA 1909 whole genome shotgun (WGS) project
            has the project accession NZ_JBIOAV000000000.  This version of the
            project (01) has the accession number NZ_JBIOAV010000000, and
            consists of sequences JBIOAV010000001-JBIOAV010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-JAN-2024
            Assembly Method        :: Unicycler v. v0.5.1
            Assembly Name          :: CMAA 1909
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.7x
            Sequencing Technology  :: Illumina MiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_043952005.1-RS_2024_10_28
            Annotation Date                   :: 10/28/2024 13:00:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,733
            CDSs (total)                      :: 5,665
            Genes (coding)                    :: 5,546
            CDSs (with protein)               :: 5,546
            Genes (RNA)                       :: 68
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 37 of 119
            Pseudo Genes (incomplete)         :: 72 of 119
            Pseudo Genes (internal stop)      :: 29 of 119
            Pseudo Genes (multiple problems)  :: 18 of 119
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5658424
                     /organism="Haladaptatus sp. CMAA 1909"
                     /mol_type="genomic DNA"
                     /strain="CMAA 1909"
                     /isolation_source="root"
                     /host="Atriplex nummularia"
                     /db_xref="taxon:3368986"
                     /geo_loc_name="Brazil: Petrolina, PE"
                     /collection_date="2019-12-17"
WGS         JBIOAV010000001-JBIOAV010000009
WGS_SCAFLD  NZ_JBIOAV010000001-NZ_JBIOAV010000009
//
LOCUS       NZ_JAVKGN010000000   2247336 bp    DNA     linear   BCT 06-NOV-2024
DEFINITION  Halodesulfurarchaeum sp. HSR-GB, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAVKGN000000000
VERSION     NZ_JAVKGN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37283475
            Assembly: GCF_031432215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halodesulfurarchaeum sp. HSR-GB
  ORGANISM  Halodesulfurarchaeum sp. HSR-GB
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae;
            Halodesulfurarchaeum.
REFERENCE   1  (bases 1 to 2247336)
  AUTHORS   Sorokin,D.Y., Abbas,B. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of halo(alkali)philic microorganisms from
            hypersaline lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2247336)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVKGN000000000.1.
            The Halodesulfurarchaeum sp. HSR-GB whole genome shotgun (WGS)
            project has the project accession NZ_JAVKGN000000000.  This version
            of the project (01) has the accession number NZ_JAVKGN010000000,
            and consists of sequences JAVKGN010000001-JAVKGN010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 570x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031432215.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 12:09:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,327
            Genes (coding)                    :: 2,296
            CDSs (with protein)               :: 2,296
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 6 of 31
            Pseudo Genes (incomplete)         :: 27 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 6 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2247336
                     /organism="Halodesulfurarchaeum sp. HSR-GB"
                     /mol_type="genomic DNA"
                     /strain="HSR-GB"
                     /isolation_source="sediments from hypersaline soda lakes"
                     /db_xref="taxon:3074077"
                     /geo_loc_name="Russia: Altai region, Kulunda Steppe"
                     /collection_date="2018-08-08"
WGS         JAVKGN010000001-JAVKGN010000003
WGS_SCAFLD  NZ_JAVKGN010000001-NZ_JAVKGN010000003
//
LOCUS       NZ_JAMQOR010000000   4262155 bp    DNA     linear   BCT 06-NOV-2024
DEFINITION  Haloarcula sp. S1AR25-4, whole genome shotgun sequencing project.
ACCESSION   NZ_JAMQOR000000000
VERSION     NZ_JAMQOR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28864585
            Assembly: GCF_031624555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. S1AR25-4
  ORGANISM  Haloarcula sp. S1AR25-4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4262155)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halomicroarcula sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4262155)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOR000000000.1.
            The Haloarcula sp. S1AR25-4 whole genome shotgun (WGS) project has
            the project accession NZ_JAMQOR000000000.  This version of the
            project (01) has the accession number NZ_JAMQOR010000000, and
            consists of sequences JAMQOR010000001-JAMQOR010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 342.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031624555.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 12:54:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,462
            CDSs (total)                      :: 4,371
            Genes (coding)                    :: 4,311
            CDSs (with protein)               :: 4,311
            Genes (RNA)                       :: 91
            rRNAs                             :: 2, 3, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 6 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 30 of 60
            Pseudo Genes (incomplete)         :: 47 of 60
            Pseudo Genes (internal stop)      :: 7 of 60
            Pseudo Genes (multiple problems)  :: 23 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4262155
                     /organism="Haloarcula sp. S1AR25-4"
                     /mol_type="genomic DNA"
                     /strain="S1AR25-4"
                     /isolation_source="saline soil"
                     /db_xref="taxon:2950538"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQOR010000001-JAMQOR010000026
WGS_SCAFLD  NZ_JAMQOR010000001-NZ_JAMQOR010000026
//
LOCUS       NZ_JAHYBW010000000   4872734 bp    DNA     linear   BCT 06-NOV-2024
DEFINITION  Haloarcula sp. 1CSR25-25, whole genome shotgun sequencing project.
ACCESSION   NZ_JAHYBW000000000
VERSION     NZ_JAHYBW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20395339
            Assembly: GCF_032027985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. 1CSR25-25
  ORGANISM  Haloarcula sp. 1CSR25-25
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4872734)
  AUTHORS   Galisteo,C., De La Haba,R., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Haloarcula sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4872734)
  AUTHORS   Galisteo,C., De La Haba,R., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2021) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHYBW000000000.1.
            The Haloarcula sp. 1CSR25-25 whole genome shotgun (WGS) project has
            the project accession NZ_JAHYBW000000000.  This version of the
            project (01) has the accession number NZ_JAHYBW010000000, and
            consists of sequences JAHYBW010000001-JAHYBW010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 410.17x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032027985.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 14:39:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,949
            CDSs (total)                      :: 4,887
            Genes (coding)                    :: 4,785
            CDSs (with protein)               :: 4,785
            Genes (RNA)                       :: 62
            rRNAs                             :: 4, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 42 of 102
            Pseudo Genes (incomplete)         :: 70 of 102
            Pseudo Genes (internal stop)      :: 22 of 102
            Pseudo Genes (multiple problems)  :: 25 of 102
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4872734
                     /organism="Haloarcula sp. 1CSR25-25"
                     /mol_type="genomic DNA"
                     /strain="1CSR25-25"
                     /isolation_source="saline soil"
                     /db_xref="taxon:2862545"
                     /geo_loc_name="Spain: Marismas Odiel, Huelva"
                     /collection_date="2019-02"
WGS         JAHYBW010000001-JAHYBW010000027
WGS_SCAFLD  NZ_JAHYBW010000001-NZ_JAHYBW010000027
//
LOCUS       NZ_JAAOHU010000000   4117004 bp    DNA     linear   BCT 06-NOV-2024
DEFINITION  Halostella sp. JP-L12, whole genome shotgun sequencing project.
ACCESSION   NZ_JAAOHU000000000
VERSION     NZ_JAAOHU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14351823
            Assembly: GCF_011440285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostella sp. JP-L12
  ORGANISM  Halostella sp. JP-L12
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae; Halostella.
REFERENCE   1  (bases 1 to 4117004)
  AUTHORS   Wang,Z., Xu,J.Q., Xu,W.M., Li,Y., Zhou,Y., Lu,Z.Z., Hou,J., Zhu,L.
            and Cui,H.L.
  TITLE     Salinigranum salinum sp. nov., isolated from a marine solar saltern
  JOURNAL   Int J Syst Evol Microbiol 66 (8), 3017-3021 (2016)
   PUBMED   27151192
REFERENCE   2  (bases 1 to 4117004)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2020) School of Agricultural Equipment
            Engineering, Jiangsu University, Xuefu Road, Zhenjiang, Jiangsu
            212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAOHU000000000.1.
            The Halostella sp. JP-L12 whole genome shotgun (WGS) project has
            the project accession NZ_JAAOHU000000000.  This version of the
            project (01) has the accession number NZ_JAAOHU010000000, and
            consists of sequences JAAOHU010000001-JAAOHU010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011440285.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 06:28:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,218
            CDSs (total)                      :: 4,160
            Genes (coding)                    :: 4,114
            CDSs (with protein)               :: 4,114
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 18 of 46
            Pseudo Genes (incomplete)         :: 33 of 46
            Pseudo Genes (internal stop)      :: 7 of 46
            Pseudo Genes (multiple problems)  :: 11 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117004
                     /organism="Halostella sp. JP-L12"
                     /mol_type="genomic DNA"
                     /strain="JP-L12"
                     /isolation_source="soil"
                     /db_xref="taxon:2716716"
                     /geo_loc_name="China: Anda"
                     /lat_lon="46.27 N 125.22 E"
                     /collection_date="2015-05"
WGS         JAAOHU010000001-JAAOHU010000010
WGS_SCAFLD  NZ_JAAOHU010000001-NZ_JAAOHU010000010
//
LOCUS       NZ_JACDUM010000000   1820380 bp    DNA     linear   BCT 07-NOV-2024
DEFINITION  Methanococcus maripaludis strain C9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUM000000000
VERSION     NZ_JACDUM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908290
            Assembly: GCF_013761085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1820380)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1820380)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUM000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUM000000000.  This version of the
            project (01) has the accession number NZ_JACDUM010000000, and
            consists of sequences JACDUM010000001-JACDUM010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 824.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013761085.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 06:29:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,964
            CDSs (total)                      :: 1,923
            Genes (coding)                    :: 1,909
            CDSs (with protein)               :: 1,909
            Genes (RNA)                       :: 41
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 1 of 14
            Pseudo Genes (incomplete)         :: 13 of 14
            Pseudo Genes (internal stop)      :: 0 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820380
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="C9"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JACDUM010000001-JACDUM010000009
WGS_SCAFLD  NZ_JACDUM010000001-NZ_JACDUM010000009
//
LOCUS       NZ_JACDUK010000000   1818213 bp    DNA     linear   BCT 07-NOV-2024
DEFINITION  Methanococcus maripaludis strain S1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUK000000000
VERSION     NZ_JACDUK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908326
            Assembly: GCF_013761135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1818213)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1818213)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUK000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUK000000000.  This version of the
            project (01) has the accession number NZ_JACDUK010000000, and
            consists of sequences JACDUK010000001-JACDUK010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 646.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013761135.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 06:34:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,978
            CDSs (total)                      :: 1,934
            Genes (coding)                    :: 1,921
            CDSs (with protein)               :: 1,921
            Genes (RNA)                       :: 44
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 2 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 1 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818213
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="S1"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: Georgia"
WGS         JACDUK010000001-JACDUK010000007
WGS_SCAFLD  NZ_JACDUK010000001-NZ_JACDUK010000007
//
LOCUS       NZ_JACDUI010000000   1740485 bp    DNA     linear   BCT 07-NOV-2024
DEFINITION  Methanococcus maripaludis strain A4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUI000000000
VERSION     NZ_JACDUI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908281
            Assembly: GCF_013761055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1740485)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1740485)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUI000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUI000000000.  This version of the
            project (01) has the accession number NZ_JACDUI010000000, and
            consists of sequences JACDUI010000001-JACDUI010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 842.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013761055.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 06:33:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,888
            CDSs (total)                      :: 1,845
            Genes (coding)                    :: 1,838
            CDSs (with protein)               :: 1,838
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 1 of 7
            Pseudo Genes (incomplete)         :: 6 of 7
            Pseudo Genes (internal stop)      :: 0 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740485
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="A4"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: Florida, Tampa Bay"
WGS         JACDUI010000001-JACDUI010000005
WGS_SCAFLD  NZ_JACDUI010000001-NZ_JACDUI010000005
//
LOCUS       NZ_JACHEC010000000   1858738 bp    DNA     linear   BCT 07-NOV-2024
DEFINITION  Methanococcus maripaludis strain C11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHEC000000000
VERSION     NZ_JACHEC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908291
            Assembly: GCF_014207325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1858738)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1858738)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHEC000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACHEC000000000.  This version of the
            project (01) has the accession number NZ_JACHEC010000000, and
            consists of sequences JACHEC010000001-JACHEC010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 806.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014207325.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 06:50:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,015
            CDSs (total)                      :: 1,972
            Genes (coding)                    :: 1,954
            CDSs (with protein)               :: 1,954
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 7 of 18
            Pseudo Genes (incomplete)         :: 11 of 18
            Pseudo Genes (internal stop)      :: 0 of 18
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858738
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="C11"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JACHEC010000001-JACHEC010000015
WGS_SCAFLD  NZ_JACHEC010000001-NZ_JACHEC010000015
//
LOCUS       NZ_JAHDUW010000000   1783575 bp    DNA     linear   BCT 07-NOV-2024
DEFINITION  Methanimicrococcus blatticola strain DSM 13328, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAHDUW000000000
VERSION     NZ_JAHDUW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19288045
            Assembly: GCF_020011555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanimicrococcus blatticola
  ORGANISM  Methanimicrococcus blatticola
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanimicrococcus.
REFERENCE   1  (bases 1 to 1783575)
  AUTHORS   Thomas,C.M., Taib,N., Gribaldo,S. and Borrel,G.
  TITLE     Comparative genomic analysis of Methanimicrococcus blatticola
            provides insights into host adaptation in archaea and the evolution
            of methanogenesis
  JOURNAL   ISME Commun 1 (1) (2021)
  REMARK    DOI: 10.1038/s43705-021-00050-y
REFERENCE   2  (bases 1 to 1783575)
  AUTHORS   Thomas,C.M., Taib,N., Gribaldo,S. and Borrel,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAY-2021) Microbiology, Institut Pasteur, 28 Rue du
            Dr Roux, Paris 75015, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHDUW000000000.1.
            The Methanimicrococcus blatticola whole genome shotgun (WGS)
            project has the project accession NZ_JAHDUW000000000.  This version
            of the project (01) has the accession number NZ_JAHDUW010000000,
            and consists of sequences JAHDUW010000001-JAHDUW010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSM:13328.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 25-OCT-2017
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 157.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020011555.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 09:00:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,672
            CDSs (total)                      :: 1,619
            Genes (coding)                    :: 1,604
            CDSs (with protein)               :: 1,604
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 6 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783575
                     /organism="Methanimicrococcus blatticola"
                     /mol_type="genomic DNA"
                     /strain="DSM 13328"
                     /isolation_source="hindgut"
                     /host="Periplaneta americana"
                     /culture_collection="DSM:13328"
                     /type_material="type strain of Methanimicrococcus
                     blatticola"
                     /db_xref="taxon:91560"
                     /geo_loc_name="Netherlands: Nijmegen"
                     /collection_date="1999"
                     /identified_by="WW Sprenger, MC van Belzen, J Rosenberg,
                     JH Hackstein, JT Keltjens"
WGS         JAHDUW010000001-JAHDUW010000012
WGS_SCAFLD  NZ_JAHDUW010000001-NZ_JAHDUW010000012
//
LOCUS       NZ_JAVKPK010000000   3742969 bp    DNA     linear   BCT 07-NOV-2024
DEFINITION  Methanosarcina baikalica strain Z-7115, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAVKPK000000000
VERSION     NZ_JAVKPK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37284058
            Assembly: GCF_031461075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina baikalica
  ORGANISM  Methanosarcina baikalica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3742969)
  AUTHORS   Zhilina,T.N. and Merkel,A.Y.
  TITLE     Whole-genome sequencing of a new Methanosarcina sp. Z-7115
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3742969)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVKPK000000000.1.
            The Methanosarcina baikalica whole genome shotgun (WGS) project has
            the project accession NZ_JAVKPK000000000.  This version of the
            project (01) has the accession number NZ_JAVKPK010000000, and
            consists of sequences JAVKPK010000001-JAVKPK010000157.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 160.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031461075.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 12:22:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,322
            CDSs (total)                      :: 3,259
            Genes (coding)                    :: 3,151
            CDSs (with protein)               :: 3,151
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 36 of 108
            Pseudo Genes (incomplete)         :: 83 of 108
            Pseudo Genes (internal stop)      :: 26 of 108
            Pseudo Genes (multiple problems)  :: 33 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3742969
                     /organism="Methanosarcina baikalica"
                     /mol_type="genomic DNA"
                     /strain="Z-7115"
                     /isolation_source="bottom sediments of lake"
                     /type_material="type strain of Methanosarcina baikalica"
                     /db_xref="taxon:3073890"
                     /geo_loc_name="Russia: Lake Baika"
                     /collection_date="2013-07"
WGS         JAVKPK010000001-JAVKPK010000157
WGS_SCAFLD  NZ_JAVKPK010000001-NZ_JAVKPK010000157
//
LOCUS       NZ_JAVLBS010000000   2931953 bp    DNA     linear   ENV 07-NOV-2024
DEFINITION  MAG: Natronomonas sp. isolate Uz-K11-14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAVLBS000000000
VERSION     NZ_JAVLBS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37160372
            Assembly: GCF_031580675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronomonas sp. (seawater metagenome)
  ORGANISM  Natronomonas sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2931953)
  AUTHORS   Slobodkin,A.I., Chernyh,N.A., Stroeva,A.R., Klyukina,A. and
            Merkel,A.Y.
  TITLE     Microbial communities of the aral sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2931953)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVLBS000000000.1.
            The Natronomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVLBS000000000.  This version of the project
            (01) has the accession number NZ_JAVLBS010000000, and consists of
            sequences JAVLBS010000001-JAVLBS010000241.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9,91876249420339x
            Sequencing Technology  :: DNBSEQ-T7
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031580675.1-RS_2024_11_06
            Annotation Date                   :: 11/06/2024 12:40:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,247
            CDSs (total)                      :: 3,203
            Genes (coding)                    :: 3,055
            CDSs (with protein)               :: 3,055
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 29 of 148
            Pseudo Genes (incomplete)         :: 118 of 148
            Pseudo Genes (internal stop)      :: 25 of 148
            Pseudo Genes (multiple problems)  :: 22 of 148
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931953
                     /organism="Natronomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="Uz-K11-14"
                     /isolation_source="Water of the Aral Sea, 100 m from the
                     shore"
                     /db_xref="taxon:2184060"
                     /environmental_sample
                     /geo_loc_name="Uzbekistan: Aral Sea"
                     /lat_lon="44.55904173 N 58.26254292 E"
                     /collection_date="2022-08"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         JAVLBS010000001-JAVLBS010000241
WGS_SCAFLD  NZ_JAVLBS010000001-NZ_JAVLBS010000241
//
LOCUS       NZ_CAYAWQ010000000   1442086 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0152, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYAWQ000000000
VERSION     NZ_CAYAWQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302631
            Assembly: GCF_964306235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1442086)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAWQ000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYAWQ000000000.  This version
            of the project (01) has the accession number NZ_CAYAWQ010000000,
            and consists of sequences CAYAWQ010000001-CAYAWQ010000078.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306235.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:02:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,494
            CDSs (total)                      :: 1,441
            Genes (coding)                    :: 1,430
            CDSs (with protein)               :: 1,430
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 0 of 11
            Pseudo Genes (incomplete)         :: 10 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1442086
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0152"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAWQ010000001-CAYAWQ010000078
WGS_SCAFLD  NZ_CAYAWQ010000001-NZ_CAYAWQ010000078
//
LOCUS       NZ_CAYATR010000000   1445042 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0143, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYATR000000000
VERSION     NZ_CAYATR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302622
            Assembly: GCF_964305435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1445042)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATR000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYATR000000000.  This version
            of the project (01) has the accession number NZ_CAYATR010000000,
            and consists of sequences CAYATR010000001-CAYATR010000129.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305435.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:05:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,535
            CDSs (total)                      :: 1,483
            Genes (coding)                    :: 1,446
            CDSs (with protein)               :: 1,446
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 0 of 37
            Pseudo Genes (incomplete)         :: 36 of 37
            Pseudo Genes (internal stop)      :: 1 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1445042
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0143"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATR010000001-CAYATR010000129
WGS_SCAFLD  NZ_CAYATR010000001-NZ_CAYATR010000129
//
LOCUS       NZ_CAYARZ010000000   1374432 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0155, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYARZ000000000
VERSION     NZ_CAYARZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302634
            Assembly: GCF_964304905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1374432)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYARZ000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYARZ000000000.  This version
            of the project (01) has the accession number NZ_CAYARZ010000000,
            and consists of sequences CAYARZ010000001-CAYARZ010000104.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964304905.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:03:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,467
            CDSs (total)                      :: 1,415
            Genes (coding)                    :: 1,381
            CDSs (with protein)               :: 1,381
            Genes (RNA)                       :: 52
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 1 of 34
            Pseudo Genes (incomplete)         :: 31 of 34
            Pseudo Genes (internal stop)      :: 3 of 34
            Pseudo Genes (multiple problems)  :: 1 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1374432
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0155"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYARZ010000001-CAYARZ010000104
WGS_SCAFLD  NZ_CAYARZ010000001-NZ_CAYARZ010000104
//
LOCUS       NZ_CAYATP010000000   1419875 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0141, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYATP000000000
VERSION     NZ_CAYATP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302620
            Assembly: GCF_964305405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1419875)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATP000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYATP000000000.  This version
            of the project (01) has the accession number NZ_CAYATP010000000,
            and consists of sequences CAYATP010000001-CAYATP010000005.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305405.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:07:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,450
            CDSs (total)                      :: 1,397
            Genes (coding)                    :: 1,393
            CDSs (with protein)               :: 1,393
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 1 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 0 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419875
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0141"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATP010000001-CAYATP010000005
WGS_SCAFLD  NZ_CAYATP010000001-NZ_CAYATP010000005
//
LOCUS       NZ_CAYATQ010000000   1451038 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0144, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYATQ000000000
VERSION     NZ_CAYATQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302623
            Assembly: GCF_964305415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1451038)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATQ000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYATQ000000000.  This version
            of the project (01) has the accession number NZ_CAYATQ010000000,
            and consists of sequences CAYATQ010000001-CAYATQ010000014.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305415.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:05:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,478
            CDSs (total)                      :: 1,425
            Genes (coding)                    :: 1,415
            CDSs (with protein)               :: 1,415
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 2 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451038
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0144"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATQ010000001-CAYATQ010000014
WGS_SCAFLD  NZ_CAYATQ010000001-NZ_CAYATQ010000014
//
LOCUS       NZ_CAYBCC010000000   1703119 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0089,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYBCC000000000
VERSION     NZ_CAYBCC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300930
            Assembly: GCF_964307605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1703119)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBCC000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYBCC000000000.
            This version of the project (01) has the accession number
            NZ_CAYBCC010000000, and consists of sequences
            CAYBCC010000001-CAYBCC010000044.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307605.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:10:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,753
            CDSs (total)                      :: 1,704
            Genes (coding)                    :: 1,690
            CDSs (with protein)               :: 1,690
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 2 of 14
            Pseudo Genes (incomplete)         :: 10 of 14
            Pseudo Genes (internal stop)      :: 5 of 14
            Pseudo Genes (multiple problems)  :: 3 of 14
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703119
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0089"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBCC010000001-CAYBCC010000044
WGS_SCAFLD  NZ_CAYBCC010000001-NZ_CAYBCC010000044
//
LOCUS       NZ_CAYAYJ010000000   1778122 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0090,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYAYJ000000000
VERSION     NZ_CAYAYJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300931
            Assembly: GCF_964306615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1778122)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYJ000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYAYJ000000000.
            This version of the project (01) has the accession number
            NZ_CAYAYJ010000000, and consists of sequences
            CAYAYJ010000001-CAYAYJ010000016.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306615.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:09:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,815
            CDSs (total)                      :: 1,766
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 3 of 14
            Pseudo Genes (incomplete)         :: 7 of 14
            Pseudo Genes (internal stop)      :: 5 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778122
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0090"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYJ010000001-CAYAYJ010000016
WGS_SCAFLD  NZ_CAYAYJ010000001-NZ_CAYAYJ010000016
//
LOCUS       NZ_CAYAXG010000000   1511838 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0147, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYAXG000000000
VERSION     NZ_CAYAXG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302626
            Assembly: GCF_964306455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1511838)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXG000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYAXG000000000.  This version
            of the project (01) has the accession number NZ_CAYAXG010000000,
            and consists of sequences CAYAXG010000001-CAYAXG010000021.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306455.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:07:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,544
            CDSs (total)                      :: 1,488
            Genes (coding)                    :: 1,477
            CDSs (with protein)               :: 1,477
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 0 of 11
            Pseudo Genes (incomplete)         :: 9 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511838
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0147"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXG010000001-CAYAXG010000021
WGS_SCAFLD  NZ_CAYAXG010000001-NZ_CAYAXG010000021
//
LOCUS       NZ_CAYAVL010000000   1529516 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0011, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVL000000000
VERSION     NZ_CAYAVL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300828
            Assembly: GCF_964305885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1529516)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVL000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVL000000000.  This version of the
            project (01) has the accession number NZ_CAYAVL010000000, and
            consists of sequences CAYAVL010000001-CAYAVL010000248.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305885.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:52:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,554
            CDSs (total)                      :: 1,525
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 29
            tRNAs                             :: 28
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 5 of 40
            Pseudo Genes (incomplete)         :: 31 of 40
            Pseudo Genes (internal stop)      :: 6 of 40
            Pseudo Genes (multiple problems)  :: 2 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529516
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0011"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVL010000001-CAYAVL010000248
WGS_SCAFLD  NZ_CAYAVL010000001-NZ_CAYAVL010000248
//
LOCUS       NZ_CAYASR010000000   1449152 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0146, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYASR000000000
VERSION     NZ_CAYASR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302625
            Assembly: GCF_964305175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1449152)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASR000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYASR000000000.  This version
            of the project (01) has the accession number NZ_CAYASR010000000,
            and consists of sequences CAYASR010000001-CAYASR010000007.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305175.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:09:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,466
            CDSs (total)                      :: 1,413
            Genes (coding)                    :: 1,405
            CDSs (with protein)               :: 1,405
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 1 of 8
            Pseudo Genes (incomplete)         :: 6 of 8
            Pseudo Genes (internal stop)      :: 1 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1449152
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0146"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASR010000001-CAYASR010000007
WGS_SCAFLD  NZ_CAYASR010000001-NZ_CAYASR010000007
//
LOCUS       NZ_CAYAYK010000000   1694909 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0004, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYK000000000
VERSION     NZ_CAYAYK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300821
            Assembly: GCF_964306715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1694909)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYK000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYK000000000.  This version of the
            project (01) has the accession number NZ_CAYAYK010000000, and
            consists of sequences CAYAYK010000001-CAYAYK010000105.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306715.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:55:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,734
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,643
            CDSs (with protein)               :: 1,643
            Genes (RNA)                       :: 35
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 10 of 56
            Pseudo Genes (incomplete)         :: 47 of 56
            Pseudo Genes (internal stop)      :: 7 of 56
            Pseudo Genes (multiple problems)  :: 7 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694909
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0004"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYK010000001-CAYAYK010000105
WGS_SCAFLD  NZ_CAYAYK010000001-NZ_CAYAYK010000105
//
LOCUS       NZ_CAYAYR010000000   1530673 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0032, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYR000000000
VERSION     NZ_CAYAYR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300849
            Assembly: GCF_964306765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1530673)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYR000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYR000000000.  This version of the
            project (01) has the accession number NZ_CAYAYR010000000, and
            consists of sequences CAYAYR010000001-CAYAYR010000061.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306765.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:53:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,562
            CDSs (total)                      :: 1,527
            Genes (coding)                    :: 1,501
            CDSs (with protein)               :: 1,501
            Genes (RNA)                       :: 35
            rRNAs                             :: 1, 2 (5S, 16S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 11 of 26
            Pseudo Genes (incomplete)         :: 15 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 4 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530673
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0032"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYR010000001-CAYAYR010000061
WGS_SCAFLD  NZ_CAYAYR010000001-NZ_CAYAYR010000061
//
LOCUS       NZ_CAYAVJ010000000   1688096 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0017, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVJ000000000
VERSION     NZ_CAYAVJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300834
            Assembly: GCF_964305855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1688096)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVJ000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVJ000000000.  This version of the
            project (01) has the accession number NZ_CAYAVJ010000000, and
            consists of sequences CAYAVJ010000001-CAYAVJ010000046.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305855.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:57:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,722
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 37
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 8 of 30
            Pseudo Genes (incomplete)         :: 22 of 30
            Pseudo Genes (internal stop)      :: 6 of 30
            Pseudo Genes (multiple problems)  :: 5 of 30
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688096
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0017"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVJ010000001-CAYAVJ010000046
WGS_SCAFLD  NZ_CAYAVJ010000001-NZ_CAYAVJ010000046
//
LOCUS       NZ_CAYARS010000000   1555700 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0061, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYARS000000000
VERSION     NZ_CAYARS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300878
            Assembly: GCF_964304945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1555700)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYARS000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYARS000000000.  This version of the
            project (01) has the accession number NZ_CAYARS010000000, and
            consists of sequences CAYARS010000001-CAYARS010000066.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964304945.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:54:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,599
            CDSs (total)                      :: 1,569
            Genes (coding)                    :: 1,532
            CDSs (with protein)               :: 1,532
            Genes (RNA)                       :: 30
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 9 of 37
            Pseudo Genes (incomplete)         :: 23 of 37
            Pseudo Genes (internal stop)      :: 8 of 37
            Pseudo Genes (multiple problems)  :: 2 of 37
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555700
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0061"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYARS010000001-CAYARS010000066
WGS_SCAFLD  NZ_CAYARS010000001-NZ_CAYARS010000066
//
LOCUS       NZ_CAYAYP010000000   1545156 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0048, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYP000000000
VERSION     NZ_CAYAYP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300865
            Assembly: GCF_964306725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1545156)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYP000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYP000000000.  This version of the
            project (01) has the accession number NZ_CAYAYP010000000, and
            consists of sequences CAYAYP010000001-CAYAYP010000316.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306725.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:55:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,739
            CDSs (total)                      :: 1,698
            Genes (coding)                    :: 1,580
            CDSs (with protein)               :: 1,580
            Genes (RNA)                       :: 41
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 12 of 118
            Pseudo Genes (incomplete)         :: 101 of 118
            Pseudo Genes (internal stop)      :: 10 of 118
            Pseudo Genes (multiple problems)  :: 4 of 118
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545156
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0048"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYP010000001-CAYAYP010000316
WGS_SCAFLD  NZ_CAYAYP010000001-NZ_CAYAYP010000316
//
LOCUS       NZ_CAYAYI010000000   1699141 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0142, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYAYI000000000
VERSION     NZ_CAYAYI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302621
            Assembly: GCF_964306665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1699141)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYI000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYAYI000000000.  This version
            of the project (01) has the accession number NZ_CAYAYI010000000,
            and consists of sequences CAYAYI010000001-CAYAYI010000258.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306665.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:07:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,865
            CDSs (total)                      :: 1,806
            Genes (coding)                    :: 1,733
            CDSs (with protein)               :: 1,733
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 0 of 73
            Pseudo Genes (incomplete)         :: 70 of 73
            Pseudo Genes (internal stop)      :: 3 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699141
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0142"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYI010000001-CAYAYI010000258
WGS_SCAFLD  NZ_CAYAYI010000001-NZ_CAYAYI010000258
//
LOCUS       NZ_CAYATN010000000   1547089 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0054, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYATN000000000
VERSION     NZ_CAYATN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300871
            Assembly: GCF_964305385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1547089)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATN000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYATN000000000.  This version of the
            project (01) has the accession number NZ_CAYATN010000000, and
            consists of sequences CAYATN010000001-CAYATN010000121.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305385.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:56:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,620
            CDSs (total)                      :: 1,591
            Genes (coding)                    :: 1,561
            CDSs (with protein)               :: 1,561
            Genes (RNA)                       :: 29
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 5 of 30
            Pseudo Genes (incomplete)         :: 24 of 30
            Pseudo Genes (internal stop)      :: 1 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547089
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0054"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATN010000001-CAYATN010000121
WGS_SCAFLD  NZ_CAYATN010000001-NZ_CAYATN010000121
//
LOCUS       NZ_CAYAXV010000000   1300094 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0093,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYAXV000000000
VERSION     NZ_CAYAXV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300934
            Assembly: GCF_964306585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1300094)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXV000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYAXV000000000.
            This version of the project (01) has the accession number
            NZ_CAYAXV010000000, and consists of sequences
            CAYAXV010000001-CAYAXV010000012.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306585.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:02:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,352
            CDSs (total)                      :: 1,310
            Genes (coding)                    :: 1,300
            CDSs (with protein)               :: 1,300
            Genes (RNA)                       :: 42
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 5 of 10
            Pseudo Genes (internal stop)      :: 5 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1300094
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0093"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXV010000001-CAYAXV010000012
WGS_SCAFLD  NZ_CAYAXV010000001-NZ_CAYAXV010000012
//
LOCUS       NZ_CAYARO010000000   1652265 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0136, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYARO000000000
VERSION     NZ_CAYARO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300923
            Assembly: GCF_964304975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1652265)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYARO000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYARO000000000.  This version of the
            project (01) has the accession number NZ_CAYARO010000000, and
            consists of sequences CAYARO010000001-CAYARO010000022.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964304975.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:10:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,661
            CDSs (total)                      :: 1,609
            Genes (coding)                    :: 1,586
            CDSs (with protein)               :: 1,586
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 0 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 6 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652265
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0136"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYARO010000001-CAYARO010000022
WGS_SCAFLD  NZ_CAYARO010000001-NZ_CAYARO010000022
//
LOCUS       NZ_CAYAYF010000000   1534371 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0092,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYAYF000000000
VERSION     NZ_CAYAYF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300933
            Assembly: GCF_964306645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1534371)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYF000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYAYF000000000.
            This version of the project (01) has the accession number
            NZ_CAYAYF010000000, and consists of sequences
            CAYAYF010000001-CAYAYF010000033.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306645.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:08:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,576
            CDSs (total)                      :: 1,532
            Genes (coding)                    :: 1,512
            CDSs (with protein)               :: 1,512
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 1 of 20
            Pseudo Genes (incomplete)         :: 16 of 20
            Pseudo Genes (internal stop)      :: 4 of 20
            Pseudo Genes (multiple problems)  :: 1 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534371
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0092"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYF010000001-CAYAYF010000033
WGS_SCAFLD  NZ_CAYAYF010000001-NZ_CAYAYF010000033
//
LOCUS       NZ_CAYASL010000000   1439889 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0149, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYASL000000000
VERSION     NZ_CAYASL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302628
            Assembly: GCF_964305185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1439889)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASL000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYASL000000000.  This version
            of the project (01) has the accession number NZ_CAYASL010000000,
            and consists of sequences CAYASL010000001-CAYASL010000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305185.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:12:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,483
            CDSs (total)                      :: 1,429
            Genes (coding)                    :: 1,421
            CDSs (with protein)               :: 1,421
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 0 of 8
            Pseudo Genes (incomplete)         :: 8 of 8
            Pseudo Genes (internal stop)      :: 0 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1439889
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0149"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASL010000001-CAYASL010000010
WGS_SCAFLD  NZ_CAYASL010000001-NZ_CAYASL010000010
//
LOCUS       NZ_CAYARW010000000   1655403 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0111, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYARW000000000
VERSION     NZ_CAYARW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300898
            Assembly: GCF_964304935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1655403)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYARW000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYARW000000000.  This version of the
            project (01) has the accession number NZ_CAYARW010000000, and
            consists of sequences CAYARW010000001-CAYARW010000040.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964304935.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:08:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,670
            CDSs (total)                      :: 1,618
            Genes (coding)                    :: 1,586
            CDSs (with protein)               :: 1,586
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 1 of 32
            Pseudo Genes (incomplete)         :: 25 of 32
            Pseudo Genes (internal stop)      :: 7 of 32
            Pseudo Genes (multiple problems)  :: 1 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655403
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0111"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYARW010000001-CAYARW010000040
WGS_SCAFLD  NZ_CAYARW010000001-NZ_CAYARW010000040
//
LOCUS       NZ_CAYAYA010000000   1584336 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0087,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYAYA000000000
VERSION     NZ_CAYAYA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300928
            Assembly: GCF_964306595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1584336)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYA000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYAYA000000000.
            This version of the project (01) has the accession number
            NZ_CAYAYA010000000, and consists of sequences
            CAYAYA010000001-CAYAYA010000057.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306595.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:10:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,667
            CDSs (total)                      :: 1,622
            Genes (coding)                    :: 1,598
            CDSs (with protein)               :: 1,598
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 2 of 24
            Pseudo Genes (incomplete)         :: 18 of 24
            Pseudo Genes (internal stop)      :: 5 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584336
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0087"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYA010000001-CAYAYA010000057
WGS_SCAFLD  NZ_CAYAYA010000001-NZ_CAYAYA010000057
//
LOCUS       NZ_CAYAXX010000000   1411834 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0145, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYAXX000000000
VERSION     NZ_CAYAXX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302624
            Assembly: GCF_964306625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1411834)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXX000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYAXX000000000.  This version
            of the project (01) has the accession number NZ_CAYAXX010000000,
            and consists of sequences CAYAXX010000001-CAYAXX010000006.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306625.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:09:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,460
            CDSs (total)                      :: 1,407
            Genes (coding)                    :: 1,399
            CDSs (with protein)               :: 1,399
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 0 of 8
            Pseudo Genes (incomplete)         :: 7 of 8
            Pseudo Genes (internal stop)      :: 1 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1411834
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0145"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXX010000001-CAYAXX010000006
WGS_SCAFLD  NZ_CAYAXX010000001-NZ_CAYAXX010000006
//
LOCUS       NZ_CAYAVG010000000   1638076 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0134, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVG000000000
VERSION     NZ_CAYAVG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300921
            Assembly: GCF_964305875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1638076)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVG000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVG000000000.  This version of the
            project (01) has the accession number NZ_CAYAVG010000000, and
            consists of sequences CAYAVG010000001-CAYAVG010000030.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305875.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:10:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,642
            CDSs (total)                      :: 1,590
            Genes (coding)                    :: 1,564
            CDSs (with protein)               :: 1,564
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 2 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 7 of 26
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638076
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0134"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVG010000001-CAYAVG010000030
WGS_SCAFLD  NZ_CAYAVG010000001-NZ_CAYAVG010000030
//
LOCUS       NZ_CAYAYN010000000   1605061 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0114, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYN000000000
VERSION     NZ_CAYAYN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300901
            Assembly: GCF_964306755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1605061)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYN000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYN000000000.  This version of the
            project (01) has the accession number NZ_CAYAYN010000000, and
            consists of sequences CAYAYN010000001-CAYAYN010000051.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306755.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:11:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,605
            CDSs (total)                      :: 1,550
            Genes (coding)                    :: 1,525
            CDSs (with protein)               :: 1,525
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 0 of 25
            Pseudo Genes (incomplete)         :: 19 of 25
            Pseudo Genes (internal stop)      :: 6 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605061
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0114"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYN010000001-CAYAYN010000051
WGS_SCAFLD  NZ_CAYAYN010000001-NZ_CAYAYN010000051
//
LOCUS       NZ_CAYAXW010000000   1384136 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0097,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYAXW000000000
VERSION     NZ_CAYAXW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302636
            Assembly: GCF_964306655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1384136)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXW000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYAXW000000000.
            This version of the project (01) has the accession number
            NZ_CAYAXW010000000, and consists of sequences
            CAYAXW010000001-CAYAXW010000008.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306655.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:02:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,371
            CDSs (total)                      :: 1,328
            Genes (coding)                    :: 1,312
            CDSs (with protein)               :: 1,312
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 0 of 16
            Pseudo Genes (incomplete)         :: 12 of 16
            Pseudo Genes (internal stop)      :: 4 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1384136
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0097"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXW010000001-CAYAXW010000008
WGS_SCAFLD  NZ_CAYAXW010000001-NZ_CAYAXW010000008
//
LOCUS       NZ_CAYARL010000000   1651736 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0109, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYARL000000000
VERSION     NZ_CAYARL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300896
            Assembly: GCF_964304925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1651736)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYARL000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYARL000000000.  This version of the
            project (01) has the accession number NZ_CAYARL010000000, and
            consists of sequences CAYARL010000001-CAYARL010000040.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964304925.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:15:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,666
            CDSs (total)                      :: 1,612
            Genes (coding)                    :: 1,592
            CDSs (with protein)               :: 1,592
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 3 of 20
            Pseudo Genes (incomplete)         :: 12 of 20
            Pseudo Genes (internal stop)      :: 6 of 20
            Pseudo Genes (multiple problems)  :: 1 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651736
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0109"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYARL010000001-CAYARL010000040
WGS_SCAFLD  NZ_CAYARL010000001-NZ_CAYARL010000040
//
LOCUS       NZ_CAYAXS010000000   1496170 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0150, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYAXS000000000
VERSION     NZ_CAYAXS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302629
            Assembly: GCF_964306535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1496170)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXS000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYAXS000000000.  This version
            of the project (01) has the accession number NZ_CAYAXS010000000,
            and consists of sequences CAYAXS010000001-CAYAXS010000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306535.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:08:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,523
            CDSs (total)                      :: 1,469
            Genes (coding)                    :: 1,456
            CDSs (with protein)               :: 1,456
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 9 of 13
            Pseudo Genes (internal stop)      :: 3 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496170
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0150"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXS010000001-CAYAXS010000027
WGS_SCAFLD  NZ_CAYAXS010000001-NZ_CAYAXS010000027
//
LOCUS       NZ_CAYBAE010000000   1656687 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0129, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBAE000000000
VERSION     NZ_CAYBAE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300916
            Assembly: GCF_964307165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1656687)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBAE000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBAE000000000.  This version of the
            project (01) has the accession number NZ_CAYBAE010000000, and
            consists of sequences CAYBAE010000001-CAYBAE010000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307165.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 12:16:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,663
            CDSs (total)                      :: 1,612
            Genes (coding)                    :: 1,590
            CDSs (with protein)               :: 1,590
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 15 of 22
            Pseudo Genes (internal stop)      :: 7 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656687
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0129"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBAE010000001-CAYBAE010000027
WGS_SCAFLD  NZ_CAYBAE010000001-NZ_CAYBAE010000027
//
LOCUS       NZ_CAYAXL010000000   1441780 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0148, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYAXL000000000
VERSION     NZ_CAYAXL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302627
            Assembly: GCF_964306495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1441780)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXL000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYAXL000000000.  This version
            of the project (01) has the accession number NZ_CAYAXL010000000,
            and consists of sequences CAYAXL010000001-CAYAXL010000015.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306495.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:07:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,462
            CDSs (total)                      :: 1,408
            Genes (coding)                    :: 1,395
            CDSs (with protein)               :: 1,395
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 12 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1441780
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0148"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXL010000001-CAYAXL010000015
WGS_SCAFLD  NZ_CAYAXL010000001-NZ_CAYAXL010000015
//
LOCUS       NZ_CAYATA010000000   1465158 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanarcanum hacksteinii isolate EST-A-0151, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAYATA000000000
VERSION     NZ_CAYATA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302630
            Assembly: GCF_964305265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanarcanum hacksteinii
  ORGANISM  Candidatus Methanarcanum hacksteinii
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccales incertae sedis;
            Candidatus Methanarcanum.
REFERENCE   1  (bases 1 to 1465158)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATA000000000.1.
            The Candidatus Methanarcanum hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_CAYATA000000000.  This version
            of the project (01) has the accession number NZ_CAYATA010000000,
            and consists of sequences CAYATA010000001-CAYATA010000003.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305265.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:02:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,483
            CDSs (total)                      :: 1,429
            Genes (coding)                    :: 1,423
            CDSs (with protein)               :: 1,423
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 5 of 6
            Pseudo Genes (internal stop)      :: 1 of 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465158
                     /organism="Candidatus Methanarcanum hacksteinii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0151"
                     /db_xref="taxon:2911857"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATA010000001-CAYATA010000003
WGS_SCAFLD  NZ_CAYATA010000001-NZ_CAYATA010000003
//
LOCUS       NZ_CAYBBG010000000   1565588 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0035, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBG000000000
VERSION     NZ_CAYBBG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300852
            Assembly: GCF_964307395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1565588)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBG000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBG000000000.  This version of the
            project (01) has the accession number NZ_CAYBBG010000000, and
            consists of sequences CAYBBG010000001-CAYBBG010000231.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307395.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:56:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,601
            CDSs (total)                      :: 1,573
            Genes (coding)                    :: 1,536
            CDSs (with protein)               :: 1,536
            Genes (RNA)                       :: 28
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 25
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 8 of 37
            Pseudo Genes (incomplete)         :: 30 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 3 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565588
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0035"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBG010000001-CAYBBG010000231
WGS_SCAFLD  NZ_CAYBBG010000001-NZ_CAYBBG010000231
//
LOCUS       NZ_CAYASV010000000   1671654 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0016, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYASV000000000
VERSION     NZ_CAYASV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300833
            Assembly: GCF_964305225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1671654)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASV000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYASV000000000.  This version of the
            project (01) has the accession number NZ_CAYASV010000000, and
            consists of sequences CAYASV010000001-CAYASV010000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305225.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:49:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,675
            CDSs (total)                      :: 1,642
            Genes (coding)                    :: 1,611
            CDSs (with protein)               :: 1,611
            Genes (RNA)                       :: 33
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 12 of 31
            Pseudo Genes (incomplete)         :: 15 of 31
            Pseudo Genes (internal stop)      :: 4 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671654
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0016"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASV010000001-CAYASV010000027
WGS_SCAFLD  NZ_CAYASV010000001-NZ_CAYASV010000027
//
LOCUS       NZ_CAYAST010000000   1556496 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0007, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAST000000000
VERSION     NZ_CAYAST000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300824
            Assembly: GCF_964305125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1556496)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAST000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAST000000000.  This version of the
            project (01) has the accession number NZ_CAYAST010000000, and
            consists of sequences CAYAST010000001-CAYAST010000165.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305125.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:54:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,671
            CDSs (total)                      :: 1,635
            Genes (coding)                    :: 1,567
            CDSs (with protein)               :: 1,567
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 5 of 68
            Pseudo Genes (incomplete)         :: 54 of 68
            Pseudo Genes (internal stop)      :: 9 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556496
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0007"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAST010000001-CAYAST010000165
WGS_SCAFLD  NZ_CAYAST010000001-NZ_CAYAST010000165
//
LOCUS       NZ_CAYAWH010000000   1777097 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0018, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAWH000000000
VERSION     NZ_CAYAWH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300835
            Assembly: GCF_964306145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1777097)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAWH000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAWH000000000.  This version of the
            project (01) has the accession number NZ_CAYAWH010000000, and
            consists of sequences CAYAWH010000001-CAYAWH010000041.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306145.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:52:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,822
            CDSs (total)                      :: 1,782
            Genes (coding)                    :: 1,753
            CDSs (with protein)               :: 1,753
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 8 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 5 of 29
            Pseudo Genes (multiple problems)  :: 2 of 29
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777097
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0018"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAWH010000001-CAYAWH010000041
WGS_SCAFLD  NZ_CAYAWH010000001-NZ_CAYAWH010000041
//
LOCUS       NZ_CAYAWP010000000   1745829 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0023, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAWP000000000
VERSION     NZ_CAYAWP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300840
            Assembly: GCF_964306185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1745829)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAWP000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAWP000000000.  This version of the
            project (01) has the accession number NZ_CAYAWP010000000, and
            consists of sequences CAYAWP010000001-CAYAWP010000024.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306185.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:52:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,743
            CDSs (total)                      :: 1,701
            Genes (coding)                    :: 1,672
            CDSs (with protein)               :: 1,672
            Genes (RNA)                       :: 42
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 6 of 29
            Pseudo Genes (incomplete)         :: 21 of 29
            Pseudo Genes (internal stop)      :: 9 of 29
            Pseudo Genes (multiple problems)  :: 6 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745829
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0023"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAWP010000001-CAYAWP010000024
WGS_SCAFLD  NZ_CAYAWP010000001-NZ_CAYAWP010000024
//
LOCUS       NZ_CAYBBR010000000   1666091 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0026, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBR000000000
VERSION     NZ_CAYBBR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300843
            Assembly: GCF_964307495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1666091)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBR000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBR000000000.  This version of the
            project (01) has the accession number NZ_CAYBBR010000000, and
            consists of sequences CAYBBR010000001-CAYBBR010000052.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307495.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:56:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,686
            CDSs (total)                      :: 1,647
            Genes (coding)                    :: 1,619
            CDSs (with protein)               :: 1,619
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 9 of 28
            Pseudo Genes (incomplete)         :: 14 of 28
            Pseudo Genes (internal stop)      :: 6 of 28
            Pseudo Genes (multiple problems)  :: 1 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666091
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0026"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBR010000001-CAYBBR010000052
WGS_SCAFLD  NZ_CAYBBR010000001-NZ_CAYBBR010000052
//
LOCUS       NZ_CAYASN010000000   1621149 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0133, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYASN000000000
VERSION     NZ_CAYASN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300920
            Assembly: GCF_964305115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1621149)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASN000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYASN000000000.  This version of the
            project (01) has the accession number NZ_CAYASN010000000, and
            consists of sequences CAYASN010000001-CAYASN010000030.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305115.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:15:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,626
            CDSs (total)                      :: 1,573
            Genes (coding)                    :: 1,551
            CDSs (with protein)               :: 1,551
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 14 of 22
            Pseudo Genes (internal stop)      :: 9 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621149
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0133"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASN010000001-CAYASN010000030
WGS_SCAFLD  NZ_CAYASN010000001-NZ_CAYASN010000030
//
LOCUS       NZ_CAYBBK010000000   1751816 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0022, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBK000000000
VERSION     NZ_CAYBBK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300839
            Assembly: GCF_964307455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1751816)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBK000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBK000000000.  This version of the
            project (01) has the accession number NZ_CAYBBK010000000, and
            consists of sequences CAYBBK010000001-CAYBBK010000033.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307455.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:52:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,745
            CDSs (total)                      :: 1,705
            Genes (coding)                    :: 1,676
            CDSs (with protein)               :: 1,676
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 20 of 29
            Pseudo Genes (internal stop)      :: 11 of 29
            Pseudo Genes (multiple problems)  :: 6 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751816
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0022"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBK010000001-CAYBBK010000033
WGS_SCAFLD  NZ_CAYBBK010000001-NZ_CAYBBK010000033
//
LOCUS       NZ_CAYATI010000000   1488724 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0053, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYATI000000000
VERSION     NZ_CAYATI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300870
            Assembly: GCF_964305315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1488724)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATI000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYATI000000000.  This version of the
            project (01) has the accession number NZ_CAYATI010000000, and
            consists of sequences CAYATI010000001-CAYATI010000077.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305315.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:56:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,548
            CDSs (total)                      :: 1,517
            Genes (coding)                    :: 1,478
            CDSs (with protein)               :: 1,478
            Genes (RNA)                       :: 31
            tRNAs                             :: 31
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 6 of 39
            Pseudo Genes (incomplete)         :: 30 of 39
            Pseudo Genes (internal stop)      :: 5 of 39
            Pseudo Genes (multiple problems)  :: 2 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488724
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0053"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATI010000001-CAYATI010000077
WGS_SCAFLD  NZ_CAYATI010000001-NZ_CAYATI010000077
//
LOCUS       NZ_CAYAZG010000000   1647968 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0120, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZG000000000
VERSION     NZ_CAYAZG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300907
            Assembly: GCF_964306975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1647968)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZG000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZG000000000.  This version of the
            project (01) has the accession number NZ_CAYAZG010000000, and
            consists of sequences CAYAZG010000001-CAYAZG010000033.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306975.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:17:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,652
            CDSs (total)                      :: 1,599
            Genes (coding)                    :: 1,573
            CDSs (with protein)               :: 1,573
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 0 of 26
            Pseudo Genes (incomplete)         :: 21 of 26
            Pseudo Genes (internal stop)      :: 5 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647968
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0120"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZG010000001-CAYAZG010000033
WGS_SCAFLD  NZ_CAYAZG010000001-NZ_CAYAZG010000033
//
LOCUS       NZ_CAYBBF010000000   1707101 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0006, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBF000000000
VERSION     NZ_CAYBBF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300823
            Assembly: GCF_964307405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1707101)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBF000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBF000000000.  This version of the
            project (01) has the accession number NZ_CAYBBF010000000, and
            consists of sequences CAYBBF010000001-CAYBBF010000137.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307405.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:49:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,743
            CDSs (total)                      :: 1,702
            Genes (coding)                    :: 1,676
            CDSs (with protein)               :: 1,676
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 9 of 26
            Pseudo Genes (incomplete)         :: 14 of 26
            Pseudo Genes (internal stop)      :: 9 of 26
            Pseudo Genes (multiple problems)  :: 5 of 26
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707101
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0006"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBF010000001-CAYBBF010000137
WGS_SCAFLD  NZ_CAYBBF010000001-NZ_CAYBBF010000137
//
LOCUS       NZ_CAYAZA010000000   1599602 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0036, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZA000000000
VERSION     NZ_CAYAZA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300853
            Assembly: GCF_964306905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1599602)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZA000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZA000000000.  This version of the
            project (01) has the accession number NZ_CAYAZA010000000, and
            consists of sequences CAYAZA010000001-CAYAZA010000066.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306905.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:57:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,616
            CDSs (total)                      :: 1,583
            Genes (coding)                    :: 1,558
            CDSs (with protein)               :: 1,558
            Genes (RNA)                       :: 33
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 28
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 4 of 25
            Pseudo Genes (incomplete)         :: 21 of 25
            Pseudo Genes (internal stop)      :: 5 of 25
            Pseudo Genes (multiple problems)  :: 4 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599602
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0036"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZA010000001-CAYAZA010000066
WGS_SCAFLD  NZ_CAYAZA010000001-NZ_CAYAZA010000066
//
LOCUS       NZ_CAYAUY010000000   1526751 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0039, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAUY000000000
VERSION     NZ_CAYAUY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300856
            Assembly: GCF_964305795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1526751)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAUY000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAUY000000000.  This version of the
            project (01) has the accession number NZ_CAYAUY010000000, and
            consists of sequences CAYAUY010000001-CAYAUY010000033.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305795.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:52:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,554
            CDSs (total)                      :: 1,517
            Genes (coding)                    :: 1,496
            CDSs (with protein)               :: 1,496
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 9 of 21
            Pseudo Genes (incomplete)         :: 11 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 1 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526751
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0039"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAUY010000001-CAYAUY010000033
WGS_SCAFLD  NZ_CAYAUY010000001-NZ_CAYAUY010000033
//
LOCUS       NZ_CAYBBU010000000   1651743 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0029, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBU000000000
VERSION     NZ_CAYBBU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300846
            Assembly: GCF_964307475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1651743)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBU000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBU000000000.  This version of the
            project (01) has the accession number NZ_CAYBBU010000000, and
            consists of sequences CAYBBU010000001-CAYBBU010000114.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307475.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:50:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,669
            CDSs (total)                      :: 1,632
            Genes (coding)                    :: 1,604
            CDSs (with protein)               :: 1,604
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 12 of 28
            Pseudo Genes (incomplete)         :: 17 of 28
            Pseudo Genes (internal stop)      :: 8 of 28
            Pseudo Genes (multiple problems)  :: 8 of 28
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651743
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0029"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBU010000001-CAYBBU010000114
WGS_SCAFLD  NZ_CAYBBU010000001-NZ_CAYBBU010000114
//
LOCUS       NZ_CAYAUL010000000   1616604 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0012, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAUL000000000
VERSION     NZ_CAYAUL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300829
            Assembly: GCF_964305585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1616604)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAUL000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAUL000000000.  This version of the
            project (01) has the accession number NZ_CAYAUL010000000, and
            consists of sequences CAYAUL010000001-CAYAUL010000084.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305585.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:54:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,577
            CDSs (total)                      :: 1,539
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 25 of 29
            Pseudo Genes (internal stop)      :: 4 of 29
            Pseudo Genes (multiple problems)  :: 4 of 29
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616604
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0012"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAUL010000001-CAYAUL010000084
WGS_SCAFLD  NZ_CAYAUL010000001-NZ_CAYAUL010000084
//
LOCUS       NZ_CAYASM010000000   1838657 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0072, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYASM000000000
VERSION     NZ_CAYASM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302549
            Assembly: GCF_964305165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1838657)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASM000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYASM000000000.  This version
            of the project (01) has the accession number NZ_CAYASM010000000,
            and consists of sequences CAYASM010000001-CAYASM010000018.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305165.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:56:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,835
            CDSs (total)                      :: 1,798
            Genes (coding)                    :: 1,775
            CDSs (with protein)               :: 1,775
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 5 of 23
            Pseudo Genes (incomplete)         :: 15 of 23
            Pseudo Genes (internal stop)      :: 4 of 23
            Pseudo Genes (multiple problems)  :: 1 of 23
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838657
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0072"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASM010000001-CAYASM010000018
WGS_SCAFLD  NZ_CAYASM010000001-NZ_CAYASM010000018
//
LOCUS       NZ_CAYAVP010000000   1621410 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0135, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVP000000000
VERSION     NZ_CAYAVP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300922
            Assembly: GCF_964305945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1621410)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVP000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVP000000000.  This version of the
            project (01) has the accession number NZ_CAYAVP010000000, and
            consists of sequences CAYAVP010000001-CAYAVP010000053.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305945.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:17:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,643
            CDSs (total)                      :: 1,591
            Genes (coding)                    :: 1,566
            CDSs (with protein)               :: 1,566
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 0 of 25
            Pseudo Genes (incomplete)         :: 17 of 25
            Pseudo Genes (internal stop)      :: 8 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621410
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0135"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVP010000001-CAYAVP010000053
WGS_SCAFLD  NZ_CAYAVP010000001-NZ_CAYAVP010000053
//
LOCUS       NZ_CAYBBA010000000   1532494 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0005, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBA000000000
VERSION     NZ_CAYBBA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300822
            Assembly: GCF_964307345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1532494)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBA000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBA000000000.  This version of the
            project (01) has the accession number NZ_CAYBBA010000000, and
            consists of sequences CAYBBA010000001-CAYBBA010000217.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307345.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:55:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,604
            CDSs (total)                      :: 1,567
            Genes (coding)                    :: 1,499
            CDSs (with protein)               :: 1,499
            Genes (RNA)                       :: 37
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 9 of 68
            Pseudo Genes (incomplete)         :: 56 of 68
            Pseudo Genes (internal stop)      :: 7 of 68
            Pseudo Genes (multiple problems)  :: 4 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532494
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0005"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBA010000001-CAYBBA010000217
WGS_SCAFLD  NZ_CAYBBA010000001-NZ_CAYBBA010000217
//
LOCUS       NZ_CAYAUP010000000   1615814 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0137, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAUP000000000
VERSION     NZ_CAYAUP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300924
            Assembly: GCF_964305675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1615814)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAUP000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAUP000000000.  This version of the
            project (01) has the accession number NZ_CAYAUP010000000, and
            consists of sequences CAYAUP010000001-CAYAUP010000035.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305675.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:18:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,606
            CDSs (total)                      :: 1,554
            Genes (coding)                    :: 1,531
            CDSs (with protein)               :: 1,531
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 1 of 23
            Pseudo Genes (incomplete)         :: 16 of 23
            Pseudo Genes (internal stop)      :: 7 of 23
            Pseudo Genes (multiple problems)  :: 1 of 23
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615814
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0137"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAUP010000001-CAYAUP010000035
WGS_SCAFLD  NZ_CAYAUP010000001-NZ_CAYAUP010000035
//
LOCUS       NZ_CAYBAZ010000000   1617922 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0122, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBAZ000000000
VERSION     NZ_CAYBAZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300909
            Assembly: GCF_964307325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1617922)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBAZ000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBAZ000000000.  This version of the
            project (01) has the accession number NZ_CAYBAZ010000000, and
            consists of sequences CAYBAZ010000001-CAYBAZ010000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307325.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:18:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,643
            CDSs (total)                      :: 1,591
            Genes (coding)                    :: 1,570
            CDSs (with protein)               :: 1,570
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 13 of 21
            Pseudo Genes (internal stop)      :: 7 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617922
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0122"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBAZ010000001-CAYBAZ010000027
WGS_SCAFLD  NZ_CAYBAZ010000001-NZ_CAYBAZ010000027
//
LOCUS       NZ_CAYAZR010000000   1649555 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0115, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZR000000000
VERSION     NZ_CAYAZR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300902
            Assembly: GCF_964307065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1649555)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZR000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZR000000000.  This version of the
            project (01) has the accession number NZ_CAYAZR010000000, and
            consists of sequences CAYAZR010000001-CAYAZR010000046.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307065.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:20:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,641
            CDSs (total)                      :: 1,589
            Genes (coding)                    :: 1,566
            CDSs (with protein)               :: 1,566
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 2 of 23
            Pseudo Genes (incomplete)         :: 14 of 23
            Pseudo Genes (internal stop)      :: 7 of 23
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649555
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0115"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZR010000001-CAYAZR010000046
WGS_SCAFLD  NZ_CAYAZR010000001-NZ_CAYAZR010000046
//
LOCUS       NZ_CAYAZM010000000   1649713 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0123, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZM000000000
VERSION     NZ_CAYAZM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300910
            Assembly: GCF_964307015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1649713)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZM000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZM000000000.  This version of the
            project (01) has the accession number NZ_CAYAZM010000000, and
            consists of sequences CAYAZM010000001-CAYAZM010000052.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307015.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:16:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,648
            CDSs (total)                      :: 1,601
            Genes (coding)                    :: 1,562
            CDSs (with protein)               :: 1,562
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 2 of 39
            Pseudo Genes (incomplete)         :: 27 of 39
            Pseudo Genes (internal stop)      :: 10 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649713
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0123"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZM010000001-CAYAZM010000052
WGS_SCAFLD  NZ_CAYAZM010000001-NZ_CAYAZM010000052
//
LOCUS       NZ_CAYAWO010000000   1675206 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0019, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAWO000000000
VERSION     NZ_CAYAWO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300836
            Assembly: GCF_964306195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1675206)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAWO000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAWO000000000.  This version of the
            project (01) has the accession number NZ_CAYAWO010000000, and
            consists of sequences CAYAWO010000001-CAYAWO010000237.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306195.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:53:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,747
            CDSs (total)                      :: 1,712
            Genes (coding)                    :: 1,635
            CDSs (with protein)               :: 1,635
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 6 of 77
            Pseudo Genes (incomplete)         :: 68 of 77
            Pseudo Genes (internal stop)      :: 7 of 77
            Pseudo Genes (multiple problems)  :: 4 of 77
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675206
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0019"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAWO010000001-CAYAWO010000237
WGS_SCAFLD  NZ_CAYAWO010000001-NZ_CAYAWO010000237
//
LOCUS       NZ_CAYAZF010000000   1607875 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0124, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZF000000000
VERSION     NZ_CAYAZF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300911
            Assembly: GCF_964306955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1607875)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZF000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZF000000000.  This version of the
            project (01) has the accession number NZ_CAYAZF010000000, and
            consists of sequences CAYAZF010000001-CAYAZF010000023.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306955.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:17:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,609
            CDSs (total)                      :: 1,557
            Genes (coding)                    :: 1,537
            CDSs (with protein)               :: 1,537
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 0 of 20
            Pseudo Genes (incomplete)         :: 14 of 20
            Pseudo Genes (internal stop)      :: 6 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607875
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0124"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZF010000001-CAYAZF010000023
WGS_SCAFLD  NZ_CAYAZF010000001-NZ_CAYAZF010000023
//
LOCUS       NZ_CAYBBH010000000   1686267 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0037, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBH000000000
VERSION     NZ_CAYBBH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300854
            Assembly: GCF_964307425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1686267)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBH000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBH000000000.  This version of the
            project (01) has the accession number NZ_CAYBBH010000000, and
            consists of sequences CAYBBH010000001-CAYBBH010000067.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307425.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:54:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,682
            Genes (coding)                    :: 1,645
            CDSs (with protein)               :: 1,645
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 11 of 37
            Pseudo Genes (incomplete)         :: 24 of 37
            Pseudo Genes (internal stop)      :: 4 of 37
            Pseudo Genes (multiple problems)  :: 2 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686267
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0037"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBH010000001-CAYBBH010000067
WGS_SCAFLD  NZ_CAYBBH010000001-NZ_CAYBBH010000067
//
LOCUS       NZ_CAYAVX010000000   1729443 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0021, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVX000000000
VERSION     NZ_CAYAVX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300838
            Assembly: GCF_964306035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1729443)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVX000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVX000000000.  This version of the
            project (01) has the accession number NZ_CAYAVX010000000, and
            consists of sequences CAYAVX010000001-CAYAVX010000024.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306035.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:57:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,698
            CDSs (total)                      :: 1,657
            Genes (coding)                    :: 1,635
            CDSs (with protein)               :: 1,635
            Genes (RNA)                       :: 41
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 5 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 3 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729443
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0021"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVX010000001-CAYAVX010000024
WGS_SCAFLD  NZ_CAYAVX010000001-NZ_CAYAVX010000024
//
LOCUS       NZ_CAYBAX010000000   1619040 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0121, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBAX000000000
VERSION     NZ_CAYBAX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300908
            Assembly: GCF_964307305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1619040)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBAX000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBAX000000000.  This version of the
            project (01) has the accession number NZ_CAYBAX010000000, and
            consists of sequences CAYBAX010000001-CAYBAX010000048.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307305.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:13:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,672
            CDSs (total)                      :: 1,620
            Genes (coding)                    :: 1,598
            CDSs (with protein)               :: 1,598
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 1 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 6 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619040
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0121"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBAX010000001-CAYBAX010000048
WGS_SCAFLD  NZ_CAYBAX010000001-NZ_CAYBAX010000048
//
LOCUS       NZ_CAYAUU010000000   1832006 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0010, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAUU000000000
VERSION     NZ_CAYAUU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300827
            Assembly: GCF_964305765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1832006)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAUU000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAUU000000000.  This version of the
            project (01) has the accession number NZ_CAYAUU010000000, and
            consists of sequences CAYAUU010000001-CAYAUU010000030.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305765.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:58:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,890
            CDSs (total)                      :: 1,848
            Genes (coding)                    :: 1,821
            CDSs (with protein)               :: 1,821
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 11 of 27
            Pseudo Genes (incomplete)         :: 12 of 27
            Pseudo Genes (internal stop)      :: 7 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832006
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0010"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAUU010000001-CAYAUU010000030
WGS_SCAFLD  NZ_CAYAUU010000001-NZ_CAYAUU010000030
//
LOCUS       NZ_CAYATU010000000   1608535 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0108, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYATU000000000
VERSION     NZ_CAYATU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300895
            Assembly: GCF_964305465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1608535)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATU000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYATU000000000.  This version of the
            project (01) has the accession number NZ_CAYATU010000000, and
            consists of sequences CAYATU010000001-CAYATU010000035.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305465.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:16:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,634
            CDSs (total)                      :: 1,581
            Genes (coding)                    :: 1,556
            CDSs (with protein)               :: 1,556
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 18 of 25
            Pseudo Genes (internal stop)      :: 7 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608535
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0108"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATU010000001-CAYATU010000035
WGS_SCAFLD  NZ_CAYATU010000001-NZ_CAYATU010000035
//
LOCUS       NZ_CAYBBL010000000   1786894 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0025, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBL000000000
VERSION     NZ_CAYBBL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300842
            Assembly: GCF_964307435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1786894)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBL000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBL000000000.  This version of the
            project (01) has the accession number NZ_CAYBBL010000000, and
            consists of sequences CAYBBL010000001-CAYBBL010000021.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307435.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:49:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,772
            CDSs (total)                      :: 1,735
            Genes (coding)                    :: 1,718
            CDSs (with protein)               :: 1,718
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 4 of 17
            Pseudo Genes (incomplete)         :: 13 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786894
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0025"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBL010000001-CAYBBL010000021
WGS_SCAFLD  NZ_CAYBBL010000001-NZ_CAYBBL010000021
//
LOCUS       NZ_CAYAZJ010000000   1688525 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0126, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZJ000000000
VERSION     NZ_CAYAZJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300913
            Assembly: GCF_964307005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1688525)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZJ000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZJ000000000.  This version of the
            project (01) has the accession number NZ_CAYAZJ010000000, and
            consists of sequences CAYAZJ010000001-CAYAZJ010000088.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307005.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:18:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,702
            CDSs (total)                      :: 1,625
            Genes (coding)                    :: 1,585
            CDSs (with protein)               :: 1,585
            Genes (RNA)                       :: 77
            rRNAs                             :: 4, 7, 14 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 13 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 1 of 40
            Pseudo Genes (incomplete)         :: 33 of 40
            Pseudo Genes (internal stop)      :: 7 of 40
            Pseudo Genes (multiple problems)  :: 1 of 40
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688525
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0126"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZJ010000001-CAYAZJ010000088
WGS_SCAFLD  NZ_CAYAZJ010000001-NZ_CAYAZJ010000088
//
LOCUS       NZ_CAYBAR010000000   1616735 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0125, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBAR000000000
VERSION     NZ_CAYBAR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300912
            Assembly: GCF_964307285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1616735)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBAR000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBAR000000000.  This version of the
            project (01) has the accession number NZ_CAYBAR010000000, and
            consists of sequences CAYBAR010000001-CAYBAR010000026.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307285.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:19:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,601
            CDSs (total)                      :: 1,550
            Genes (coding)                    :: 1,531
            CDSs (with protein)               :: 1,531
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 2 of 19
            Pseudo Genes (incomplete)         :: 9 of 19
            Pseudo Genes (internal stop)      :: 8 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616735
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0125"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBAR010000001-CAYBAR010000026
WGS_SCAFLD  NZ_CAYBAR010000001-NZ_CAYBAR010000026
//
LOCUS       NZ_CAYBAI010000000   1622677 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0119, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBAI000000000
VERSION     NZ_CAYBAI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300906
            Assembly: GCF_964307215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1622677)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBAI000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBAI000000000.  This version of the
            project (01) has the accession number NZ_CAYBAI010000000, and
            consists of sequences CAYBAI010000001-CAYBAI010000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307215.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:19:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,656
            CDSs (total)                      :: 1,604
            Genes (coding)                    :: 1,578
            CDSs (with protein)               :: 1,578
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 0 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 9 of 26
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622677
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0119"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBAI010000001-CAYBAI010000055
WGS_SCAFLD  NZ_CAYBAI010000001-NZ_CAYBAI010000055
//
LOCUS       NZ_CAYAYC010000000   1629633 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0103, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYC000000000
VERSION     NZ_CAYAYC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300890
            Assembly: GCF_964306605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1629633)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYC000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYC000000000.  This version of the
            project (01) has the accession number NZ_CAYAYC010000000, and
            consists of sequences CAYAYC010000001-CAYAYC010000037.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306605.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:11:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,639
            CDSs (total)                      :: 1,587
            Genes (coding)                    :: 1,560
            CDSs (with protein)               :: 1,560
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 4 of 27
            Pseudo Genes (incomplete)         :: 16 of 27
            Pseudo Genes (internal stop)      :: 8 of 27
            Pseudo Genes (multiple problems)  :: 1 of 27
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629633
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0103"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYC010000001-CAYAYC010000037
WGS_SCAFLD  NZ_CAYAYC010000001-NZ_CAYAYC010000037
//
LOCUS       NZ_CAYBAJ010000000   1633098 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0127, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBAJ000000000
VERSION     NZ_CAYBAJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300914
            Assembly: GCF_964307235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1633098)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBAJ000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBAJ000000000.  This version of the
            project (01) has the accession number NZ_CAYBAJ010000000, and
            consists of sequences CAYBAJ010000001-CAYBAJ010000020.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307235.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:15:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,639
            CDSs (total)                      :: 1,588
            Genes (coding)                    :: 1,564
            CDSs (with protein)               :: 1,564
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 1 of 24
            Pseudo Genes (incomplete)         :: 15 of 24
            Pseudo Genes (internal stop)      :: 9 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633098
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0127"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBAJ010000001-CAYBAJ010000020
WGS_SCAFLD  NZ_CAYBAJ010000001-NZ_CAYBAJ010000020
//
LOCUS       NZ_CAYATJ010000000   1664541 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0116, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYATJ000000000
VERSION     NZ_CAYATJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300903
            Assembly: GCF_964305305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1664541)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATJ000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYATJ000000000.  This version of the
            project (01) has the accession number NZ_CAYATJ010000000, and
            consists of sequences CAYATJ010000001-CAYATJ010000112.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305305.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:11:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,735
            CDSs (total)                      :: 1,682
            Genes (coding)                    :: 1,640
            CDSs (with protein)               :: 1,640
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 1 of 42
            Pseudo Genes (incomplete)         :: 34 of 42
            Pseudo Genes (internal stop)      :: 7 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664541
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0116"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATJ010000001-CAYATJ010000112
WGS_SCAFLD  NZ_CAYATJ010000001-NZ_CAYATJ010000112
//
LOCUS       NZ_CAYAYB010000000   1646231 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0104, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYB000000000
VERSION     NZ_CAYAYB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300891
            Assembly: GCF_964306635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1646231)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYB000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYB000000000.  This version of the
            project (01) has the accession number NZ_CAYAYB010000000, and
            consists of sequences CAYAYB010000001-CAYAYB010000033.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306635.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:20:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,664
            CDSs (total)                      :: 1,611
            Genes (coding)                    :: 1,593
            CDSs (with protein)               :: 1,593
            Genes (RNA)                       :: 53
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 0 of 18
            Pseudo Genes (incomplete)         :: 11 of 18
            Pseudo Genes (internal stop)      :: 7 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646231
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0104"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYB010000001-CAYAYB010000033
WGS_SCAFLD  NZ_CAYAYB010000001-NZ_CAYAYB010000033
//
LOCUS       NZ_CAYBBD010000000   1554668 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0130, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBD000000000
VERSION     NZ_CAYBBD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300917
            Assembly: GCF_964307385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1554668)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBD000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBD000000000.  This version of the
            project (01) has the accession number NZ_CAYBBD010000000, and
            consists of sequences CAYBBD010000001-CAYBBD010000024.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307385.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:11:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,566
            CDSs (total)                      :: 1,514
            Genes (coding)                    :: 1,495
            CDSs (with protein)               :: 1,495
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 0 of 19
            Pseudo Genes (incomplete)         :: 11 of 19
            Pseudo Genes (internal stop)      :: 8 of 19
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554668
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0130"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBD010000001-CAYBBD010000024
WGS_SCAFLD  NZ_CAYBBD010000001-NZ_CAYBBD010000024
//
LOCUS       NZ_CAYARP010000000   1711663 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0107, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYARP000000000
VERSION     NZ_CAYARP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300894
            Assembly: GCF_964304865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1711663)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYARP000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYARP000000000.  This version of the
            project (01) has the accession number NZ_CAYARP010000000, and
            consists of sequences CAYARP010000001-CAYARP010000060.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964304865.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:11:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,757
            CDSs (total)                      :: 1,704
            Genes (coding)                    :: 1,671
            CDSs (with protein)               :: 1,671
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 2 of 33
            Pseudo Genes (incomplete)         :: 24 of 33
            Pseudo Genes (internal stop)      :: 7 of 33
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711663
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0107"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYARP010000001-CAYARP010000060
WGS_SCAFLD  NZ_CAYARP010000001-NZ_CAYARP010000060
//
LOCUS       NZ_CAYAUS010000000   1584460 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0139, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAUS000000000
VERSION     NZ_CAYAUS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300926
            Assembly: GCF_964305745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1584460)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAUS000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAUS000000000.  This version of the
            project (01) has the accession number NZ_CAYAUS010000000, and
            consists of sequences CAYAUS010000001-CAYAUS010000020.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305745.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:09:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,614
            CDSs (total)                      :: 1,562
            Genes (coding)                    :: 1,540
            CDSs (with protein)               :: 1,540
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 15 of 22
            Pseudo Genes (internal stop)      :: 8 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584460
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0139"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAUS010000001-CAYAUS010000020
WGS_SCAFLD  NZ_CAYAUS010000001-NZ_CAYAUS010000020
//
LOCUS       NZ_CAYASS010000000   1757024 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0009, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYASS000000000
VERSION     NZ_CAYASS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300826
            Assembly: GCF_964305135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1757024)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASS000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYASS000000000.  This version of the
            project (01) has the accession number NZ_CAYASS010000000, and
            consists of sequences CAYASS010000001-CAYASS010000107.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305135.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:54:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,789
            CDSs (total)                      :: 1,753
            Genes (coding)                    :: 1,704
            CDSs (with protein)               :: 1,704
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 13 of 49
            Pseudo Genes (incomplete)         :: 35 of 49
            Pseudo Genes (internal stop)      :: 6 of 49
            Pseudo Genes (multiple problems)  :: 4 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757024
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0009"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASS010000001-CAYASS010000107
WGS_SCAFLD  NZ_CAYASS010000001-NZ_CAYASS010000107
//
LOCUS       NZ_CAYAVH010000000   1640943 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0131, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVH000000000
VERSION     NZ_CAYAVH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300918
            Assembly: GCF_964305905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1640943)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVH000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVH000000000.  This version of the
            project (01) has the accession number NZ_CAYAVH010000000, and
            consists of sequences CAYAVH010000001-CAYAVH010000028.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305905.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:23:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,648
            CDSs (total)                      :: 1,595
            Genes (coding)                    :: 1,567
            CDSs (with protein)               :: 1,567
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 1 of 28
            Pseudo Genes (incomplete)         :: 19 of 28
            Pseudo Genes (internal stop)      :: 8 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640943
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0131"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVH010000001-CAYAVH010000028
WGS_SCAFLD  NZ_CAYAVH010000001-NZ_CAYAVH010000028
//
LOCUS       NZ_CAYAYD010000000   1717835 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0101, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYD000000000
VERSION     NZ_CAYAYD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300888
            Assembly: GCF_964306565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1717835)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYD000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYD000000000.  This version of the
            project (01) has the accession number NZ_CAYAYD010000000, and
            consists of sequences CAYAYD010000001-CAYAYD010000125.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306565.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:09:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,760
            CDSs (total)                      :: 1,707
            Genes (coding)                    :: 1,650
            CDSs (with protein)               :: 1,650
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 1 of 57
            Pseudo Genes (incomplete)         :: 48 of 57
            Pseudo Genes (internal stop)      :: 9 of 57
            Pseudo Genes (multiple problems)  :: 1 of 57
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717835
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0101"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYD010000001-CAYAYD010000125
WGS_SCAFLD  NZ_CAYAYD010000001-NZ_CAYAYD010000125
//
LOCUS       NZ_CAYAXY010000000   1538993 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0106, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAXY000000000
VERSION     NZ_CAYAXY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300893
            Assembly: GCF_964306575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1538993)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXY000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAXY000000000.  This version of the
            project (01) has the accession number NZ_CAYAXY010000000, and
            consists of sequences CAYAXY010000001-CAYAXY010000018.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306575.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:09:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,556
            CDSs (total)                      :: 1,504
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 0 of 24
            Pseudo Genes (incomplete)         :: 17 of 24
            Pseudo Genes (internal stop)      :: 7 of 24
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538993
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0106"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXY010000001-CAYAXY010000018
WGS_SCAFLD  NZ_CAYAXY010000001-NZ_CAYAXY010000018
//
LOCUS       NZ_CAYAVS010000000   1576801 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0014, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVS000000000
VERSION     NZ_CAYAVS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300831
            Assembly: GCF_964306005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1576801)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVS000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVS000000000.  This version of the
            project (01) has the accession number NZ_CAYAVS010000000, and
            consists of sequences CAYAVS010000001-CAYAVS010000069.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306005.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:58:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,652
            CDSs (total)                      :: 1,617
            Genes (coding)                    :: 1,577
            CDSs (with protein)               :: 1,577
            Genes (RNA)                       :: 35
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 8 of 40
            Pseudo Genes (incomplete)         :: 32 of 40
            Pseudo Genes (internal stop)      :: 7 of 40
            Pseudo Genes (multiple problems)  :: 5 of 40
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576801
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0014"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVS010000001-CAYAVS010000069
WGS_SCAFLD  NZ_CAYAVS010000001-NZ_CAYAVS010000069
//
LOCUS       NZ_CAYAZT010000000   1612582 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0113, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZT000000000
VERSION     NZ_CAYAZT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300900
            Assembly: GCF_964307055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1612582)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZT000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZT000000000.  This version of the
            project (01) has the accession number NZ_CAYAZT010000000, and
            consists of sequences CAYAZT010000001-CAYAZT010000047.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307055.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:08:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,614
            CDSs (total)                      :: 1,562
            Genes (coding)                    :: 1,539
            CDSs (with protein)               :: 1,539
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 1 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 5 of 23
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612582
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0113"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZT010000001-CAYAZT010000047
WGS_SCAFLD  NZ_CAYAZT010000001-NZ_CAYAZT010000047
//
LOCUS       NZ_CAYAVM010000000   1660499 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0112, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVM000000000
VERSION     NZ_CAYAVM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300899
            Assembly: GCF_964305955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1660499)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVM000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVM000000000.  This version of the
            project (01) has the accession number NZ_CAYAVM010000000, and
            consists of sequences CAYAVM010000001-CAYAVM010000025.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305955.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:22:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,668
            CDSs (total)                      :: 1,616
            Genes (coding)                    :: 1,590
            CDSs (with protein)               :: 1,590
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 1 of 26
            Pseudo Genes (incomplete)         :: 18 of 26
            Pseudo Genes (internal stop)      :: 8 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660499
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0112"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVM010000001-CAYAVM010000025
WGS_SCAFLD  NZ_CAYAVM010000001-NZ_CAYAVM010000025
//
LOCUS       NZ_CAYAZI010000000   1641636 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0118, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZI000000000
VERSION     NZ_CAYAZI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300905
            Assembly: GCF_964306995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1641636)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZI000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZI000000000.  This version of the
            project (01) has the accession number NZ_CAYAZI010000000, and
            consists of sequences CAYAZI010000001-CAYAZI010000016.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306995.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:16:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,668
            CDSs (total)                      :: 1,617
            Genes (coding)                    :: 1,594
            CDSs (with protein)               :: 1,594
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 0 of 23
            Pseudo Genes (incomplete)         :: 16 of 23
            Pseudo Genes (internal stop)      :: 7 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641636
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0118"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZI010000001-CAYAZI010000016
WGS_SCAFLD  NZ_CAYAZI010000001-NZ_CAYAZI010000016
//
LOCUS       NZ_CAYBBB010000000   1769504 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0073, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYBBB000000000
VERSION     NZ_CAYBBB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302550
            Assembly: GCF_964307365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1769504)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBB000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYBBB000000000.  This version
            of the project (01) has the accession number NZ_CAYBBB010000000,
            and consists of sequences CAYBBB010000001-CAYBBB010000032.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307365.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:57:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,774
            CDSs (total)                      :: 1,737
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 9 of 29
            Pseudo Genes (incomplete)         :: 22 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 4 of 29
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769504
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0073"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBB010000001-CAYBBB010000032
WGS_SCAFLD  NZ_CAYBBB010000001-NZ_CAYBBB010000032
//
LOCUS       NZ_CAYBBN010000000   1861930 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0024, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBN000000000
VERSION     NZ_CAYBBN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300841
            Assembly: GCF_964307465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1861930)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBN000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBN000000000.  This version of the
            project (01) has the accession number NZ_CAYBBN010000000, and
            consists of sequences CAYBBN010000001-CAYBBN010000030.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307465.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:51:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,881
            CDSs (total)                      :: 1,840
            Genes (coding)                    :: 1,817
            CDSs (with protein)               :: 1,817
            Genes (RNA)                       :: 41
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 6 of 23
            Pseudo Genes (incomplete)         :: 18 of 23
            Pseudo Genes (internal stop)      :: 1 of 23
            Pseudo Genes (multiple problems)  :: 2 of 23
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861930
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0024"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBN010000001-CAYBBN010000030
WGS_SCAFLD  NZ_CAYBBN010000001-NZ_CAYBBN010000030
//
LOCUS       NZ_CAYAZV010000000   1707436 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0117, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZV000000000
VERSION     NZ_CAYAZV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300904
            Assembly: GCF_964307075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1707436)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZV000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZV000000000.  This version of the
            project (01) has the accession number NZ_CAYAZV010000000, and
            consists of sequences CAYAZV010000001-CAYAZV010000132.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307075.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:17:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,773
            CDSs (total)                      :: 1,720
            Genes (coding)                    :: 1,668
            CDSs (with protein)               :: 1,668
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 1 of 52
            Pseudo Genes (incomplete)         :: 43 of 52
            Pseudo Genes (internal stop)      :: 8 of 52
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707436
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0117"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZV010000001-CAYAZV010000132
WGS_SCAFLD  NZ_CAYAZV010000001-NZ_CAYAZV010000132
//
LOCUS       NZ_CAYASU010000000   1781818 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0071, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYASU000000000
VERSION     NZ_CAYASU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302548
            Assembly: GCF_964305275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1781818)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASU000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYASU000000000.  This version
            of the project (01) has the accession number NZ_CAYASU010000000,
            and consists of sequences CAYASU010000001-CAYASU010000039.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305275.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:52:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,762
            CDSs (total)                      :: 1,724
            Genes (coding)                    :: 1,697
            CDSs (with protein)               :: 1,697
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 7 of 27
            Pseudo Genes (incomplete)         :: 20 of 27
            Pseudo Genes (internal stop)      :: 3 of 27
            Pseudo Genes (multiple problems)  :: 3 of 27
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781818
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0071"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASU010000001-CAYASU010000039
WGS_SCAFLD  NZ_CAYASU010000001-NZ_CAYASU010000039
//
LOCUS       NZ_CAYAZK010000000   1607207 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0038, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZK000000000
VERSION     NZ_CAYAZK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300855
            Assembly: GCF_964307025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1607207)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZK000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZK000000000.  This version of the
            project (01) has the accession number NZ_CAYAZK010000000, and
            consists of sequences CAYAZK010000001-CAYAZK010000020.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307025.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:53:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,585
            CDSs (total)                      :: 1,544
            Genes (coding)                    :: 1,522
            CDSs (with protein)               :: 1,522
            Genes (RNA)                       :: 41
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 5 of 22
            Pseudo Genes (incomplete)         :: 18 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607207
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0038"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZK010000001-CAYAZK010000020
WGS_SCAFLD  NZ_CAYAZK010000001-NZ_CAYAZK010000020
//
LOCUS       NZ_CAYAVR010000000   1631635 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0110, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVR000000000
VERSION     NZ_CAYAVR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300897
            Assembly: GCF_964305935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1631635)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVR000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVR000000000.  This version of the
            project (01) has the accession number NZ_CAYAVR010000000, and
            consists of sequences CAYAVR010000001-CAYAVR010000021.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305935.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:27:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,671
            CDSs (total)                      :: 1,620
            Genes (coding)                    :: 1,598
            CDSs (with protein)               :: 1,598
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 12 of 22
            Pseudo Genes (internal stop)      :: 8 of 22
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631635
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0110"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVR010000001-CAYAVR010000021
WGS_SCAFLD  NZ_CAYAVR010000001-NZ_CAYAVR010000021
//
LOCUS       NZ_CAYAVU010000000   1686738 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0013, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVU000000000
VERSION     NZ_CAYAVU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300830
            Assembly: GCF_964305995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1686738)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVU000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVU000000000.  This version of the
            project (01) has the accession number NZ_CAYAVU010000000, and
            consists of sequences CAYAVU010000001-CAYAVU010000170.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305995.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:51:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,779
            CDSs (total)                      :: 1,736
            Genes (coding)                    :: 1,671
            CDSs (with protein)               :: 1,671
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 7 of 65
            Pseudo Genes (incomplete)         :: 56 of 65
            Pseudo Genes (internal stop)      :: 3 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686738
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0013"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVU010000001-CAYAVU010000170
WGS_SCAFLD  NZ_CAYAVU010000001-NZ_CAYAVU010000170
//
LOCUS       NZ_CAYAYS010000000   1601261 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0033, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYS000000000
VERSION     NZ_CAYAYS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300850
            Assembly: GCF_964306835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1601261)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYS000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYS000000000.  This version of the
            project (01) has the accession number NZ_CAYAYS010000000, and
            consists of sequences CAYAYS010000001-CAYAYS010000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306835.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:51:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,672
            CDSs (total)                      :: 1,633
            Genes (coding)                    :: 1,593
            CDSs (with protein)               :: 1,593
            Genes (RNA)                       :: 39
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 10 of 40
            Pseudo Genes (incomplete)         :: 30 of 40
            Pseudo Genes (internal stop)      :: 6 of 40
            Pseudo Genes (multiple problems)  :: 5 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601261
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0033"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYS010000001-CAYAYS010000055
WGS_SCAFLD  NZ_CAYAYS010000001-NZ_CAYAYS010000055
//
LOCUS       NZ_CAYAYZ010000000   1616880 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0034, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYZ000000000
VERSION     NZ_CAYAYZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300851
            Assembly: GCF_964306855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1616880)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYZ000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYZ000000000.  This version of the
            project (01) has the accession number NZ_CAYAYZ010000000, and
            consists of sequences CAYAYZ010000001-CAYAYZ010000052.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306855.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:51:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,662
            CDSs (total)                      :: 1,627
            Genes (coding)                    :: 1,603
            CDSs (with protein)               :: 1,603
            Genes (RNA)                       :: 35
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 5 of 24
            Pseudo Genes (incomplete)         :: 17 of 24
            Pseudo Genes (internal stop)      :: 4 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616880
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0034"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYZ010000001-CAYAYZ010000052
WGS_SCAFLD  NZ_CAYAYZ010000001-NZ_CAYAYZ010000052
//
LOCUS       NZ_CAYAYW010000000   1763766 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0031, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYW000000000
VERSION     NZ_CAYAYW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300848
            Assembly: GCF_964306865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1763766)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYW000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYW000000000.  This version of the
            project (01) has the accession number NZ_CAYAYW010000000, and
            consists of sequences CAYAYW010000001-CAYAYW010000019.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306865.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:50:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,792
            CDSs (total)                      :: 1,750
            Genes (coding)                    :: 1,725
            CDSs (with protein)               :: 1,725
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 10 of 25
            Pseudo Genes (incomplete)         :: 18 of 25
            Pseudo Genes (internal stop)      :: 4 of 25
            Pseudo Genes (multiple problems)  :: 5 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763766
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0031"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYW010000001-CAYAYW010000019
WGS_SCAFLD  NZ_CAYAYW010000001-NZ_CAYAYW010000019
//
LOCUS       NZ_CAYATK010000000   1731396 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0069, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYATK000000000
VERSION     NZ_CAYATK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302546
            Assembly: GCF_964305355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1731396)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATK000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYATK000000000.  This version
            of the project (01) has the accession number NZ_CAYATK010000000,
            and consists of sequences CAYATK010000001-CAYATK010000231.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305355.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:53:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,770
            CDSs (total)                      :: 1,731
            Genes (coding)                    :: 1,671
            CDSs (with protein)               :: 1,671
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 8 of 60
            Pseudo Genes (incomplete)         :: 51 of 60
            Pseudo Genes (internal stop)      :: 4 of 60
            Pseudo Genes (multiple problems)  :: 2 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731396
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0069"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATK010000001-CAYATK010000231
WGS_SCAFLD  NZ_CAYATK010000001-NZ_CAYATK010000231
//
LOCUS       NZ_CAYASF010000000   1670466 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0008, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYASF000000000
VERSION     NZ_CAYASF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300825
            Assembly: GCF_964305085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1670466)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASF000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYASF000000000.  This version of the
            project (01) has the accession number NZ_CAYASF010000000, and
            consists of sequences CAYASF010000001-CAYASF010000096.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305085.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:55:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,692
            CDSs (total)                      :: 1,652
            Genes (coding)                    :: 1,611
            CDSs (with protein)               :: 1,611
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 16 of 41
            Pseudo Genes (incomplete)         :: 22 of 41
            Pseudo Genes (internal stop)      :: 5 of 41
            Pseudo Genes (multiple problems)  :: 2 of 41
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670466
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0008"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASF010000001-CAYASF010000096
WGS_SCAFLD  NZ_CAYASF010000001-NZ_CAYASF010000096
//
LOCUS       NZ_CAYAZB010000000   1677681 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0030, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAZB000000000
VERSION     NZ_CAYAZB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300847
            Assembly: GCF_964306885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1677681)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAZB000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAZB000000000.  This version of the
            project (01) has the accession number NZ_CAYAZB010000000, and
            consists of sequences CAYAZB010000001-CAYAZB010000114.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306885.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:55:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,754
            CDSs (total)                      :: 1,720
            Genes (coding)                    :: 1,675
            CDSs (with protein)               :: 1,675
            Genes (RNA)                       :: 34
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 7 of 45
            Pseudo Genes (incomplete)         :: 36 of 45
            Pseudo Genes (internal stop)      :: 4 of 45
            Pseudo Genes (multiple problems)  :: 1 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677681
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0030"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAZB010000001-CAYAZB010000114
WGS_SCAFLD  NZ_CAYAZB010000001-NZ_CAYAZB010000114
//
LOCUS       NZ_CAYATB010000000   1861995 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0070, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYATB000000000
VERSION     NZ_CAYATB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302547
            Assembly: GCF_964305365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1861995)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATB000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYATB000000000.  This version
            of the project (01) has the accession number NZ_CAYATB010000000,
            and consists of sequences CAYATB010000001-CAYATB010000024.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305365.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:57:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,851
            CDSs (total)                      :: 1,813
            Genes (coding)                    :: 1,783
            CDSs (with protein)               :: 1,783
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 9 of 30
            Pseudo Genes (incomplete)         :: 19 of 30
            Pseudo Genes (internal stop)      :: 6 of 30
            Pseudo Genes (multiple problems)  :: 3 of 30
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861995
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0070"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATB010000001-CAYATB010000024
WGS_SCAFLD  NZ_CAYATB010000001-NZ_CAYATB010000024
//
LOCUS       NZ_CAYAYY010000000   1678397 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0027, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYY000000000
VERSION     NZ_CAYAYY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300844
            Assembly: GCF_964306895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1678397)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYY000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYY000000000.  This version of the
            project (01) has the accession number NZ_CAYAYY010000000, and
            consists of sequences CAYAYY010000001-CAYAYY010000029.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306895.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:53:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,673
            CDSs (total)                      :: 1,634
            Genes (coding)                    :: 1,608
            CDSs (with protein)               :: 1,608
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 4 of 26
            Pseudo Genes (incomplete)         :: 22 of 26
            Pseudo Genes (internal stop)      :: 3 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678397
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0027"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYY010000001-CAYAYY010000029
WGS_SCAFLD  NZ_CAYAYY010000001-NZ_CAYAYY010000029
//
LOCUS       NZ_CAYBBV010000000   1730284 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0028, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBV000000000
VERSION     NZ_CAYBBV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300845
            Assembly: GCF_964307555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1730284)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBV000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBV000000000.  This version of the
            project (01) has the accession number NZ_CAYBBV010000000, and
            consists of sequences CAYBBV010000001-CAYBBV010000015.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307555.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:53:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,727
            CDSs (total)                      :: 1,686
            Genes (coding)                    :: 1,665
            CDSs (with protein)               :: 1,665
            Genes (RNA)                       :: 41
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 6 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 5 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730284
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0028"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBV010000001-CAYBBV010000015
WGS_SCAFLD  NZ_CAYBBV010000001-NZ_CAYBBV010000015
//
LOCUS       NZ_CAYBCD010000000   1794829 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0020, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBCD000000000
VERSION     NZ_CAYBCD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300837
            Assembly: GCF_964307585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1794829)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBCD000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYBCD000000000.  This version of the
            project (01) has the accession number NZ_CAYBCD010000000, and
            consists of sequences CAYBCD010000001-CAYBCD010000019.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307585.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:53:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,775
            CDSs (total)                      :: 1,734
            Genes (coding)                    :: 1,709
            CDSs (with protein)               :: 1,709
            Genes (RNA)                       :: 41
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 18 of 25
            Pseudo Genes (internal stop)      :: 4 of 25
            Pseudo Genes (multiple problems)  :: 4 of 25
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794829
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0020"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBCD010000001-CAYBCD010000019
WGS_SCAFLD  NZ_CAYBCD010000001-NZ_CAYBCD010000019
//
LOCUS       NZ_CAYBBP010000000   1601798 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0132, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBP000000000
VERSION     NZ_CAYBBP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300919
            Assembly: GCF_964307545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1601798)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBP000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBP000000000.  This version of the
            project (01) has the accession number NZ_CAYBBP010000000, and
            consists of sequences CAYBBP010000001-CAYBBP010000015.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307545.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 12:09:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,603
            CDSs (total)                      :: 1,551
            Genes (coding)                    :: 1,525
            CDSs (with protein)               :: 1,525
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 3 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 7 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601798
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0132"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBP010000001-CAYBBP010000015
WGS_SCAFLD  NZ_CAYBBP010000001-NZ_CAYBBP010000015
//
LOCUS       NZ_CAYBCB010000000   1574703 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0094,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYBCB000000000
VERSION     NZ_CAYBCB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300935
            Assembly: GCF_964307595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1574703)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBCB000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYBCB000000000.
            This version of the project (01) has the accession number
            NZ_CAYBCB010000000, and consists of sequences
            CAYBCB010000001-CAYBCB010000054.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307595.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 12:08:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,647
            CDSs (total)                      :: 1,599
            Genes (coding)                    :: 1,568
            CDSs (with protein)               :: 1,568
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 42
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 2 of 31
            Pseudo Genes (incomplete)         :: 22 of 31
            Pseudo Genes (internal stop)      :: 9 of 31
            Pseudo Genes (multiple problems)  :: 2 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574703
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0094"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBCB010000001-CAYBCB010000054
WGS_SCAFLD  NZ_CAYBCB010000001-NZ_CAYBCB010000054
//
LOCUS       NZ_CAYAYE010000000   1842347 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0088,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYAYE000000000
VERSION     NZ_CAYAYE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300929
            Assembly: GCF_964306695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1842347)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYE000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYAYE000000000.
            This version of the project (01) has the accession number
            NZ_CAYAYE010000000, and consists of sequences
            CAYAYE010000001-CAYAYE010000043.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306695.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 12:08:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,914
            CDSs (total)                      :: 1,862
            Genes (coding)                    :: 1,837
            CDSs (with protein)               :: 1,837
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 2 of 25
            Pseudo Genes (incomplete)         :: 16 of 25
            Pseudo Genes (internal stop)      :: 8 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842347
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0088"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYE010000001-CAYAYE010000043
WGS_SCAFLD  NZ_CAYAYE010000001-NZ_CAYAYE010000043
//
LOCUS       NZ_CAYAYG010000000   1648560 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0138, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAYG000000000
VERSION     NZ_CAYAYG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300925
            Assembly: GCF_964306675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1648560)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAYG000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYAYG000000000.  This version of the
            project (01) has the accession number NZ_CAYAYG010000000, and
            consists of sequences CAYAYG010000001-CAYAYG010000039.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306675.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 12:10:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,659
            CDSs (total)                      :: 1,607
            Genes (coding)                    :: 1,570
            CDSs (with protein)               :: 1,570
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 1 of 37
            Pseudo Genes (incomplete)         :: 30 of 37
            Pseudo Genes (internal stop)      :: 6 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648560
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0138"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAYG010000001-CAYAYG010000039
WGS_SCAFLD  NZ_CAYAYG010000001-NZ_CAYAYG010000039
//
LOCUS       NZ_CAYBBT010000000   1601578 bp    DNA     linear   BCT 09-NOV-2024
DEFINITION  Methanomethylophilus alvi isolate EST-A-0128, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYBBT000000000
VERSION     NZ_CAYBBT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300915
            Assembly: GCF_964307525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanomethylophilus alvi
  ORGANISM  Methanomethylophilus alvi
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae;
            Methanomethylophilus.
REFERENCE   1  (bases 1 to 1601578)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBT000000000.1.
            The Methanomethylophilus alvi whole genome shotgun (WGS) project
            has the project accession NZ_CAYBBT000000000.  This version of the
            project (01) has the accession number NZ_CAYBBT010000000, and
            consists of sequences CAYBBT010000001-CAYBBT010000035.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307525.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 12:13:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,620
            CDSs (total)                      :: 1,568
            Genes (coding)                    :: 1,546
            CDSs (with protein)               :: 1,546
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 15 of 22
            Pseudo Genes (internal stop)      :: 7 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601578
                     /organism="Methanomethylophilus alvi"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0128"
                     /db_xref="taxon:1291540"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBT010000001-CAYBBT010000035
WGS_SCAFLD  NZ_CAYBBT010000001-NZ_CAYBBT010000035
//
LOCUS       NZ_CAYBCA010000000   1814224 bp    DNA     linear   BCT 10-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0091,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYBCA000000000
VERSION     NZ_CAYBCA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300932
            Assembly: GCF_964307615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1814224)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBCA000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYBCA000000000.
            This version of the project (01) has the accession number
            NZ_CAYBCA010000000, and consists of sequences
            CAYBCA010000001-CAYBCA010000019.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307615.1-RS_2024_11_10
            Annotation Date                   :: 11/10/2024 00:02:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,852
            CDSs (total)                      :: 1,801
            Genes (coding)                    :: 1,788
            CDSs (with protein)               :: 1,788
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 4 of 13
            Pseudo Genes (incomplete)         :: 5 of 13
            Pseudo Genes (internal stop)      :: 5 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814224
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0091"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBCA010000001-CAYBCA010000019
WGS_SCAFLD  NZ_CAYBCA010000001-NZ_CAYBCA010000019
//
LOCUS       NZ_CAYAVD010000000   1783753 bp    DNA     linear   BCT 10-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0015, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAVD000000000
VERSION     NZ_CAYAVD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300832
            Assembly: GCF_964305845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1783753)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVD000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAVD000000000.  This version of the
            project (01) has the accession number NZ_CAYAVD010000000, and
            consists of sequences CAYAVD010000001-CAYAVD010000047.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305845.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 23:50:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,816
            CDSs (total)                      :: 1,778
            Genes (coding)                    :: 1,742
            CDSs (with protein)               :: 1,742
            Genes (RNA)                       :: 38
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 8 of 36
            Pseudo Genes (incomplete)         :: 28 of 36
            Pseudo Genes (internal stop)      :: 3 of 36
            Pseudo Genes (multiple problems)  :: 3 of 36
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783753
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0015"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVD010000001-CAYAVD010000047
WGS_SCAFLD  NZ_CAYAVD010000001-NZ_CAYAVD010000047
//
LOCUS       NZ_CAYAVO010000000   1509358 bp    DNA     linear   BCT 10-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0098,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYAVO000000000
VERSION     NZ_CAYAVO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302637
            Assembly: GCF_964305975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1509358)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAVO000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYAVO000000000.
            This version of the project (01) has the accession number
            NZ_CAYAVO010000000, and consists of sequences
            CAYAVO010000001-CAYAVO010000016.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305975.1-RS_2024_11_10
            Annotation Date                   :: 11/10/2024 00:00:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,529
            CDSs (total)                      :: 1,482
            Genes (coding)                    :: 1,471
            CDSs (with protein)               :: 1,471
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 0 of 11
            Pseudo Genes (incomplete)         :: 10 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509358
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0098"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAVO010000001-CAYAVO010000016
WGS_SCAFLD  NZ_CAYAVO010000001-NZ_CAYAVO010000016
//
LOCUS       NZ_CAYBCE010000000   1688581 bp    DNA     linear   BCT 10-NOV-2024
DEFINITION  Candidatus Methanomassiliicoccus intestinalis isolate EST-A-0096,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CAYBCE000000000
VERSION     NZ_CAYBCE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302635
            Assembly: GCF_964307635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanomassiliicoccus intestinalis
  ORGANISM  Candidatus Methanomassiliicoccus intestinalis
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomassiliicoccaceae;
            Methanomassiliicoccus.
REFERENCE   1  (bases 1 to 1688581)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBCE000000000.1.
            The Candidatus Methanomassiliicoccus intestinalis whole genome
            shotgun (WGS) project has the project accession NZ_CAYBCE000000000.
            This version of the project (01) has the accession number
            NZ_CAYBCE010000000, and consists of sequences
            CAYBCE010000001-CAYBCE010000084.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307635.1-RS_2024_11_10
            Annotation Date                   :: 11/10/2024 00:05:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,670
            Genes (coding)                    :: 1,638
            CDSs (with protein)               :: 1,638
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 2 of 32
            Pseudo Genes (incomplete)         :: 27 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 1 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688581
                     /organism="Candidatus Methanomassiliicoccus intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0096"
                     /db_xref="taxon:1406512"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBCE010000001-CAYBCE010000084
WGS_SCAFLD  NZ_CAYBCE010000001-NZ_CAYBCE010000084
//
LOCUS       NZ_CAYARK010000000   1365033 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0056, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYARK000000000
VERSION     NZ_CAYARK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300873
            Assembly: GCF_964304805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1365033)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYARK000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYARK000000000.  This version of the
            project (01) has the accession number NZ_CAYARK010000000, and
            consists of sequences CAYARK010000001-CAYARK010000194.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964304805.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:52:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,447
            CDSs (total)                      :: 1,412
            Genes (coding)                    :: 1,386
            CDSs (with protein)               :: 1,386
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 6 of 26
            Pseudo Genes (incomplete)         :: 18 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1365033
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0056"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYARK010000001-CAYARK010000194
WGS_SCAFLD  NZ_CAYARK010000001-NZ_CAYARK010000194
//
LOCUS       NZ_CAYAXE010000000   1568759 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0082, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYAXE000000000
VERSION     NZ_CAYAXE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302559
            Assembly: GCF_964306405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1568759)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXE000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYAXE000000000.  This version
            of the project (01) has the accession number NZ_CAYAXE010000000,
            and consists of sequences CAYAXE010000001-CAYAXE010000205.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306405.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:51:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,700
            CDSs (total)                      :: 1,665
            Genes (coding)                    :: 1,570
            CDSs (with protein)               :: 1,570
            Genes (RNA)                       :: 35
            tRNAs                             :: 34
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 6 of 95
            Pseudo Genes (incomplete)         :: 85 of 95
            Pseudo Genes (internal stop)      :: 7 of 95
            Pseudo Genes (multiple problems)  :: 3 of 95
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568759
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0082"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXE010000001-CAYAXE010000205
WGS_SCAFLD  NZ_CAYAXE010000001-NZ_CAYAXE010000205
//
LOCUS       NZ_CAYATW010000000   1359558 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0055, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYATW000000000
VERSION     NZ_CAYATW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300872
            Assembly: GCF_964305455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1359558)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYATW000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYATW000000000.  This version of the
            project (01) has the accession number NZ_CAYATW010000000, and
            consists of sequences CAYATW010000001-CAYATW010000117.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305455.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:50:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,473
            CDSs (total)                      :: 1,450
            Genes (coding)                    :: 1,383
            CDSs (with protein)               :: 1,383
            Genes (RNA)                       :: 23
            tRNAs                             :: 22
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 9 of 67
            Pseudo Genes (incomplete)         :: 56 of 67
            Pseudo Genes (internal stop)      :: 5 of 67
            Pseudo Genes (multiple problems)  :: 3 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1359558
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0055"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYATW010000001-CAYATW010000117
WGS_SCAFLD  NZ_CAYATW010000001-NZ_CAYATW010000117
//
LOCUS       NZ_CAYBAQ010000000   1440452 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0084, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYBAQ000000000
VERSION     NZ_CAYBAQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302561
            Assembly: GCF_964307245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1440452)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBAQ000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYBAQ000000000.  This version
            of the project (01) has the accession number NZ_CAYBAQ010000000,
            and consists of sequences CAYBAQ010000001-CAYBAQ010000242.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307245.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 00:02:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,427
            CDSs (total)                      :: 1,394
            Genes (coding)                    :: 1,369
            CDSs (with protein)               :: 1,369
            Genes (RNA)                       :: 33
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 3 of 25
            Pseudo Genes (incomplete)         :: 20 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440452
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0084"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBAQ010000001-CAYBAQ010000242
WGS_SCAFLD  NZ_CAYBAQ010000001-NZ_CAYBAQ010000242
//
LOCUS       NZ_CAYBBC010000000   1353623 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0077, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYBBC000000000
VERSION     NZ_CAYBBC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302554
            Assembly: GCF_964307355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1353623)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBBC000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYBBC000000000.  This version
            of the project (01) has the accession number NZ_CAYBBC010000000,
            and consists of sequences CAYBBC010000001-CAYBBC010000303.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307355.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:53:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,494
            CDSs (total)                      :: 1,471
            Genes (coding)                    :: 1,367
            CDSs (with protein)               :: 1,367
            Genes (RNA)                       :: 23
            tRNAs                             :: 22
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 7 of 104
            Pseudo Genes (incomplete)         :: 92 of 104
            Pseudo Genes (internal stop)      :: 5 of 104
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1353623
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0077"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBBC010000001-CAYBBC010000303
WGS_SCAFLD  NZ_CAYBBC010000001-NZ_CAYBBC010000303
//
LOCUS       NZ_CAYASY010000000   1364953 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0052, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYASY000000000
VERSION     NZ_CAYASY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300869
            Assembly: GCF_964305235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1364953)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASY000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYASY000000000.  This version of the
            project (01) has the accession number NZ_CAYASY010000000, and
            consists of sequences CAYASY010000001-CAYASY010000097.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305235.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:53:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,428
            CDSs (total)                      :: 1,393
            Genes (coding)                    :: 1,340
            CDSs (with protein)               :: 1,340
            Genes (RNA)                       :: 35
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 7 of 53
            Pseudo Genes (incomplete)         :: 41 of 53
            Pseudo Genes (internal stop)      :: 7 of 53
            Pseudo Genes (multiple problems)  :: 2 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1364953
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0052"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASY010000001-CAYASY010000097
WGS_SCAFLD  NZ_CAYASY010000001-NZ_CAYASY010000097
//
LOCUS       NZ_CAYBAS010000000   1442092 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii TS147C isolate EST-A-0079, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAYBAS000000000
VERSION     NZ_CAYBAS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116302556
            Assembly: GCF_964307265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii TS147C
  ORGANISM  Methanobrevibacter smithii TS147C
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1442092)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYBAS000000000.1.
            The Methanobrevibacter smithii TS147C whole genome shotgun (WGS)
            project has the project accession NZ_CAYBAS000000000.  This version
            of the project (01) has the accession number NZ_CAYBAS010000000,
            and consists of sequences CAYBAS010000001-CAYBAS010000206.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964307265.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:58:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,613
            CDSs (total)                      :: 1,581
            Genes (coding)                    :: 1,514
            CDSs (with protein)               :: 1,514
            Genes (RNA)                       :: 32
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 4 of 67
            Pseudo Genes (incomplete)         :: 62 of 67
            Pseudo Genes (internal stop)      :: 3 of 67
            Pseudo Genes (multiple problems)  :: 2 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1442092
                     /organism="Methanobrevibacter smithii TS147C"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0079"
                     /db_xref="taxon:911125"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYBAS010000001-CAYBAS010000206
WGS_SCAFLD  NZ_CAYBAS010000001-NZ_CAYBAS010000206
//
LOCUS       NZ_CAYAUZ010000000   1453094 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0049, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAUZ000000000
VERSION     NZ_CAYAUZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300866
            Assembly: GCF_964305735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1453094)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAUZ000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAUZ000000000.  This version of the
            project (01) has the accession number NZ_CAYAUZ010000000, and
            consists of sequences CAYAUZ010000001-CAYAUZ010000332.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305735.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:52:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,648
            CDSs (total)                      :: 1,624
            Genes (coding)                    :: 1,474
            CDSs (with protein)               :: 1,474
            Genes (RNA)                       :: 24
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 11 of 150
            Pseudo Genes (incomplete)         :: 129 of 150
            Pseudo Genes (internal stop)      :: 17 of 150
            Pseudo Genes (multiple problems)  :: 6 of 150
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1453094
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0049"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAUZ010000001-CAYAUZ010000332
WGS_SCAFLD  NZ_CAYAUZ010000001-NZ_CAYAUZ010000332
//
LOCUS       NZ_CAYASX010000000   1419272 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0050, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYASX000000000
VERSION     NZ_CAYASX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300867
            Assembly: GCF_964305285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1419272)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYASX000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYASX000000000.  This version of the
            project (01) has the accession number NZ_CAYASX010000000, and
            consists of sequences CAYASX010000001-CAYASX010000057.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964305285.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:49:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,476
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,408
            CDSs (with protein)               :: 1,408
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 28
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 2 of 37
            Pseudo Genes (incomplete)         :: 31 of 37
            Pseudo Genes (internal stop)      :: 6 of 37
            Pseudo Genes (multiple problems)  :: 2 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419272
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0050"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYASX010000001-CAYASX010000057
WGS_SCAFLD  NZ_CAYASX010000001-NZ_CAYASX010000057
//
LOCUS       NZ_CAYAXC010000000   1491190 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0060, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAXC000000000
VERSION     NZ_CAYAXC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300877
            Assembly: GCF_964306375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1491190)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXC000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAXC000000000.  This version of the
            project (01) has the accession number NZ_CAYAXC010000000, and
            consists of sequences CAYAXC010000001-CAYAXC010000027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306375.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:57:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,517
            CDSs (total)                      :: 1,480
            Genes (coding)                    :: 1,459
            CDSs (with protein)               :: 1,459
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1491190
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0060"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXC010000001-CAYAXC010000027
WGS_SCAFLD  NZ_CAYAXC010000001-NZ_CAYAXC010000027
//
LOCUS       NZ_CAYAXH010000000   1486372 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0062, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAXH000000000
VERSION     NZ_CAYAXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300879
            Assembly: GCF_964306425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1486372)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXH000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAXH000000000.  This version of the
            project (01) has the accession number NZ_CAYAXH010000000, and
            consists of sequences CAYAXH010000001-CAYAXH010000056.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306425.1-RS_2024_11_09
            Annotation Date                   :: 11/09/2024 11:49:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,527
            CDSs (total)                      :: 1,489
            Genes (coding)                    :: 1,463
            CDSs (with protein)               :: 1,463
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 32
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 7 of 26
            Pseudo Genes (incomplete)         :: 20 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1486372
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0062"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXH010000001-CAYAXH010000056
WGS_SCAFLD  NZ_CAYAXH010000001-NZ_CAYAXH010000056
//
LOCUS       NZ_CAYAXA010000000   1339799 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0059, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAXA000000000
VERSION     NZ_CAYAXA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300876
            Assembly: GCF_964306295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1339799)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXA000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAXA000000000.  This version of the
            project (01) has the accession number NZ_CAYAXA010000000, and
            consists of sequences CAYAXA010000001-CAYAXA010000202.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306295.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 11:51:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,491
            CDSs (total)                      :: 1,458
            Genes (coding)                    :: 1,369
            CDSs (with protein)               :: 1,369
            Genes (RNA)                       :: 33
            rRNAs                             :: 1 (16S)
            complete rRNAs                    :: 1 (16S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 6 of 89
            Pseudo Genes (incomplete)         :: 80 of 89
            Pseudo Genes (internal stop)      :: 6 of 89
            Pseudo Genes (multiple problems)  :: 3 of 89
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1339799
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0059"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXA010000001-CAYAXA010000202
WGS_SCAFLD  NZ_CAYAXA010000001-NZ_CAYAXA010000202
//
LOCUS       NZ_JANBVG010000000   2114349 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Metallosphaera sedula strain Drty10-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANBVG000000000
VERSION     NZ_JANBVG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29490029
            Assembly: GCF_024239095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Metallosphaera sedula
  ORGANISM  Metallosphaera sedula
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2114349)
  AUTHORS   Liu,X.
  TITLE     The genome sequence of the metal-mobilizing, extremely
            thermoacidophilic archaeon Metallosphaera sedula provides insights
            into bioleaching-associated metabolism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2114349)
  AUTHORS   Liu,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2022) ZZR Lab, SUSTech Institude of Oceanography,
            Xueyuan Road, Shenzhen, Guang Dong 518055, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANBVG000000000.1.
            The Metallosphaera sedula whole genome shotgun (WGS) project has
            the project accession NZ_JANBVG000000000.  This version of the
            project (01) has the accession number NZ_JANBVG010000000, and
            consists of sequences JANBVG010000001-JANBVG010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 141.6x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024239095.1-RS_2024_11_18
            Annotation Date                   :: 11/18/2024 15:12:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,408
            CDSs (total)                      :: 2,353
            Genes (coding)                    :: 2,326
            CDSs (with protein)               :: 2,326
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 8 of 27
            Pseudo Genes (incomplete)         :: 20 of 27
            Pseudo Genes (internal stop)      :: 4 of 27
            Pseudo Genes (multiple problems)  :: 5 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114349
                     /organism="Metallosphaera sedula"
                     /mol_type="genomic DNA"
                     /strain="Drty10-2"
                     /isolation_source="hot spring sediment"
                     /db_xref="taxon:43687"
                     /geo_loc_name="China: Tengchong Rehai"
                     /lat_lon="25.3 N 98.7 E"
                     /collection_date="2020-07"
WGS         JANBVG010000001-JANBVG010000014
WGS_SCAFLD  NZ_JANBVG010000001-NZ_JANBVG010000014
//
LOCUS       NZ_JABFNK010000000   2077832 bp    DNA     linear   BCT 20-NOV-2024
DEFINITION  Thermococcus bergensis strain T7324, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABFNK000000000
VERSION     NZ_JABFNK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13612049
            Assembly: GCF_020386975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus bergensis
  ORGANISM  Thermococcus bergensis
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 2077832)
  AUTHORS   Birkeland,N.K., Bunk,B., Sproer,C., Klenk,H.P. and Schonheit,P.
  TITLE     Thermococcus bergensis sp. nov., a Novel Hyperthermophilic
            Starch-Degrading Archaeon
  JOURNAL   Biology (Basel) 10 (5), 387 (2021)
   PUBMED   33947041
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077832)
  AUTHORS   Birkeland,N.K. and Bunk,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2020) Department of Biological Sciences,
            University of Bergen, Thormoehlensgate 53 A/B, Bergen NO5020,
            Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABFNK000000000.1.
            The Thermococcus bergensis whole genome shotgun (WGS) project has
            the project accession NZ_JABFNK000000000.  This version of the
            project (01) has the accession number NZ_JABFNK010000000, and
            consists of sequences JABFNK010000001-JABFNK010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-JUN-2017
            Assembly Method        :: HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 160.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020386975.1-RS_2024_11_18
            Annotation Date                   :: 11/18/2024 02:40:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,388
            CDSs (total)                      :: 2,334
            Genes (coding)                    :: 2,266
            CDSs (with protein)               :: 2,266
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 32 of 68
            Pseudo Genes (incomplete)         :: 41 of 68
            Pseudo Genes (internal stop)      :: 2 of 68
            Pseudo Genes (multiple problems)  :: 7 of 68
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077832
                     /organism="Thermococcus bergensis"
                     /mol_type="genomic DNA"
                     /strain="T7324"
                     /isolation_source="subsurface"
                     /type_material="type strain of Thermococcus bergensis"
                     /db_xref="taxon:2689387"
                     /geo_loc_name="Norway: Deep and hot North Sea oil well"
                     /collection_date="1993"
WGS         JABFNK010000001-JABFNK010000005
WGS_SCAFLD  NZ_JABFNK010000001-NZ_JABFNK010000005
//
LOCUS       NZ_JAVYTO010000000   1316497 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Desulfurococcus sp. isolate DRTY-2_201901_bins_22, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAVYTO000000000
VERSION     NZ_JAVYTO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036851
            Assembly: GCF_038728645.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Desulfurococcus sp. (hot springs metagenome)
  ORGANISM  Desulfurococcus sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1316497)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316497)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYTO000000000.1.
            The Desulfurococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYTO000000000.  This version of the project
            (01) has the accession number NZ_JAVYTO010000000, and consists of
            sequences JAVYTO010000001-JAVYTO010000023.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4202.162164359911x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038728645.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:51:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,494
            CDSs (total)                      :: 1,447
            Genes (coding)                    :: 1,418
            CDSs (with protein)               :: 1,418
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 3 of 29
            Pseudo Genes (incomplete)         :: 26 of 29
            Pseudo Genes (internal stop)      :: 0 of 29
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316497
                     /organism="Desulfurococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_201901_bins_22"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:51678"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYTO010000001-JAVYTO010000023
WGS_SCAFLD  NZ_JAVYTO010000001-NZ_JAVYTO010000023
//
LOCUS       NZ_JAVYWQ010000000   1512283 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Desulfurococcus sp. isolate DRTY-2_202007_bins_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYWQ000000000
VERSION     NZ_JAVYWQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036931
            Assembly: GCF_038727035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Desulfurococcus sp. (hot springs metagenome)
  ORGANISM  Desulfurococcus sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1512283)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512283)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYWQ000000000.1.
            The Desulfurococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYWQ000000000.  This version of the project
            (01) has the accession number NZ_JAVYWQ010000000, and consists of
            sequences JAVYWQ010000001-JAVYWQ010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.5777180198507x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038727035.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:52:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,670
            CDSs (total)                      :: 1,616
            Genes (coding)                    :: 1,590
            CDSs (with protein)               :: 1,590
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 7 of 26
            Pseudo Genes (incomplete)         :: 21 of 26
            Pseudo Genes (internal stop)      :: 0 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512283
                     /organism="Desulfurococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_202007_bins_7"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:51678"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2020-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYWQ010000001-JAVYWQ010000026
WGS_SCAFLD  NZ_JAVYWQ010000001-NZ_JAVYWQ010000026
//
LOCUS       NZ_JAVYNV010000000   1385008 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Desulfurococcus sp. isolate DRTY-1_201705_bins_11, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAVYNV000000000
VERSION     NZ_JAVYNV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036702
            Assembly: GCF_038735195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Desulfurococcus sp. (hot springs metagenome)
  ORGANISM  Desulfurococcus sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1385008)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1385008)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYNV000000000.1.
            The Desulfurococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYNV000000000.  This version of the project
            (01) has the accession number NZ_JAVYNV010000000, and consists of
            sequences JAVYNV010000001-JAVYNV010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5652.480796697278x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038735195.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:02:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,572
            CDSs (total)                      :: 1,525
            Genes (coding)                    :: 1,482
            CDSs (with protein)               :: 1,482
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 8 of 43
            Pseudo Genes (incomplete)         :: 35 of 43
            Pseudo Genes (internal stop)      :: 1 of 43
            Pseudo Genes (multiple problems)  :: 1 of 43
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1385008
                     /organism="Desulfurococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201705_bins_11"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:51678"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYNV010000001-JAVYNV010000032
WGS_SCAFLD  NZ_JAVYNV010000001-NZ_JAVYNV010000032
//
LOCUS       NZ_JAVYQU010000000   1477178 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Desulfurococcus sp. isolate DRTY-1_201901_bins_9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYQU000000000
VERSION     NZ_JAVYQU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036779
            Assembly: GCF_038731415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Desulfurococcus sp. (hot springs metagenome)
  ORGANISM  Desulfurococcus sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1477178)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1477178)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYQU000000000.1.
            The Desulfurococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYQU000000000.  This version of the project
            (01) has the accession number NZ_JAVYQU010000000, and consists of
            sequences JAVYQU010000001-JAVYQU010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5867.685719849489x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038731415.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:00:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,654
            CDSs (total)                      :: 1,601
            Genes (coding)                    :: 1,579
            CDSs (with protein)               :: 1,579
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 5 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1477178
                     /organism="Desulfurococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201901_bins_9"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:51678"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYQU010000001-JAVYQU010000020
WGS_SCAFLD  NZ_JAVYQU010000001-NZ_JAVYQU010000020
//
LOCUS       NZ_JAVZUK010000000   1554978 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Desulfurococcus sp. isolate DRTY-8_201808_bins_15, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAVZUK000000000
VERSION     NZ_JAVZUK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037549
            Assembly: GCF_038879055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Desulfurococcus sp. (hot springs metagenome)
  ORGANISM  Desulfurococcus sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1554978)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554978)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZUK000000000.1.
            The Desulfurococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZUK000000000.  This version of the project
            (01) has the accession number NZ_JAVZUK010000000, and consists of
            sequences JAVZUK010000001-JAVZUK010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.377271848282884x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038879055.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:33:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,746
            CDSs (total)                      :: 1,694
            Genes (coding)                    :: 1,661
            CDSs (with protein)               :: 1,661
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 6 of 33
            Pseudo Genes (incomplete)         :: 28 of 33
            Pseudo Genes (internal stop)      :: 0 of 33
            Pseudo Genes (multiple problems)  :: 1 of 33
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554978
                     /organism="Desulfurococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201808_bins_15"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:51678"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZUK010000001-JAVZUK010000032
WGS_SCAFLD  NZ_JAVZUK010000001-NZ_JAVZUK010000032
//
LOCUS       NZ_JAVZPN010000000   1631940 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Desulfurococcus sp. isolate DRTY-7_201601_bins_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZPN000000000
VERSION     NZ_JAVZPN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037422
            Assembly: GCF_038881575.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Desulfurococcus sp. (hot springs metagenome)
  ORGANISM  Desulfurococcus sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1631940)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631940)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZPN000000000.1.
            The Desulfurococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZPN000000000.  This version of the project
            (01) has the accession number NZ_JAVZPN010000000, and consists of
            sequences JAVZPN010000001-JAVZPN010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6964.489235078881x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038881575.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:35:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,792
            CDSs (total)                      :: 1,738
            Genes (coding)                    :: 1,711
            CDSs (with protein)               :: 1,711
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 4 of 27
            Pseudo Genes (incomplete)         :: 23 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            Pseudo Genes (multiple problems)  :: 1 of 27
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631940
                     /organism="Desulfurococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-7_201601_bins_7"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:51678"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-7
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2016-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZPN010000001-JAVZPN010000022
WGS_SCAFLD  NZ_JAVZPN010000001-NZ_JAVZPN010000022
//
LOCUS       NZ_JBJGAC010000000   3724865 bp    DNA     linear   BCT 23-NOV-2024
DEFINITION  Haloferax volcanii strain VS-22, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBJGAC000000000
VERSION     NZ_JBJGAC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44033659
            Assembly: GCF_045033415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3724865)
  AUTHORS   Sorokin,D.Y., Merkel,A.Y., Messina,E., Marturano,L. and Yakimov,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2024) Marine Molecular Microbiology & Biotech,
            C.N.R. - Institute for Biological Resources and Marine
            Biotechnology (IRBIM), Spianata S. Raineri, 86, Messina 98122,
            Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJGAC000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JBJGAC000000000.  This version of the project
            (01) has the accession number NZ_JBJGAC010000000, and consists of
            sequences JBJGAC010000001-JBJGAC010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 05-DEC-2023
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045033415.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:11:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,759
            CDSs (total)                      :: 3,700
            Genes (coding)                    :: 3,666
            CDSs (with protein)               :: 3,666
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 15 of 34
            Pseudo Genes (incomplete)         :: 20 of 34
            Pseudo Genes (internal stop)      :: 6 of 34
            Pseudo Genes (multiple problems)  :: 7 of 34
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3724865
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="VS-22"
                     /isolation_source="ENVO:01001050"
                     /db_xref="taxon:2246"
                     /geo_loc_name="Viet Nam: Hon Khoi Salt Fields"
                     /lat_lon="12.53 N 109.20 E"
                     /collection_date="2022-06-06"
WGS         JBJGAC010000001-JBJGAC010000008
WGS_SCAFLD  NZ_JBJGAC010000001-NZ_JBJGAC010000008
//
LOCUS       NZ_JBDGQZ010000000   2936770 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Halobellus sp. isolate DAL-Ass_37_98C3R, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBDGQZ000000000
VERSION     NZ_JBDGQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40372919
            Assembly: GCF_042218505.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halobellus sp. (salt lake metagenome)
  ORGANISM  Halobellus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 2936770)
  AUTHORS   Gutierrez-Preciado,A., Dede,B., Baker,B.A., Eme,L., Moreira,D. and
            Lopez-Garcia,P.
  TITLE     Extremely acidic proteomes and metabolic flexibility in bacteria
            and highly diversified archaea thriving in geothermal chaotropic
            brines
  JOURNAL   Nat Ecol Evol 8 (10), 1856-1869 (2024)
   PUBMED   39134651
REFERENCE   2  (bases 1 to 2936770)
  AUTHORS   Gutierrez-Preciado,A., Lopez-Garcia,P. and Moreira,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2024) DEEM team - Unite d'Ecologie, Systematique
            et Evolution, Dallol grouped submission, Site IDEEV 12 rue 128,
            Gif-sur-Yvette 91190, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDGQZ000000000.1.
            The Halobellus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBDGQZ000000000.  This version of the project
            (01) has the accession number NZ_JBDGQZ010000000, and consists of
            sequences JBDGQZ010000001-JBDGQZ010000065.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Assembly Name          :: DAL-Ass_37_98C3R
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 284.35x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042218505.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 10:54:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,003
            CDSs (total)                      :: 2,960
            Genes (coding)                    :: 2,894
            CDSs (with protein)               :: 2,894
            Genes (RNA)                       :: 43
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 24 of 66
            Pseudo Genes (incomplete)         :: 46 of 66
            Pseudo Genes (internal stop)      :: 12 of 66
            Pseudo Genes (multiple problems)  :: 15 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936770
                     /organism="Halobellus sp."
                     /mol_type="genomic DNA"
                     /isolate="DAL-Ass_37_98C3R"
                     /isolation_source="water column"
                     /db_xref="taxon:1979212"
                     /environmental_sample
                     /geo_loc_name="Ethiopia:Danakil depression, Assale Lake"
                     /lat_lon="14.05 N 40.39 E"
                     /collection_date="2018/2019"
                     /metagenome_source="salt lake metagenome"
                     /metagenomic
WGS         JBDGQZ010000001-JBDGQZ010000065
WGS_SCAFLD  NZ_JBDGQZ010000001-NZ_JBDGQZ010000065
//
LOCUS       NZ_JBDGTV010000000   2450672 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Halosegnis sp. isolate DAL-WCL_32_99C4R, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBDGTV000000000
VERSION     NZ_JBDGTV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40372993
            Assembly: GCF_042216475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halosegnis sp. (salt lake metagenome)
  ORGANISM  Halosegnis sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1  (bases 1 to 2450672)
  AUTHORS   Gutierrez-Preciado,A., Dede,B., Baker,B.A., Eme,L., Moreira,D. and
            Lopez-Garcia,P.
  TITLE     Extremely acidic proteomes and metabolic flexibility in bacteria
            and highly diversified archaea thriving in geothermal chaotropic
            brines
  JOURNAL   Nat Ecol Evol 8 (10), 1856-1869 (2024)
   PUBMED   39134651
REFERENCE   2  (bases 1 to 2450672)
  AUTHORS   Gutierrez-Preciado,A., Lopez-Garcia,P. and Moreira,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2024) DEEM team - Unite d'Ecologie, Systematique
            et Evolution, Dallol grouped submission, Site IDEEV 12 rue 128,
            Gif-sur-Yvette 91190, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDGTV000000000.1.
            The Halosegnis sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBDGTV000000000.  This version of the project
            (01) has the accession number NZ_JBDGTV010000000, and consists of
            sequences JBDGTV010000001-JBDGTV010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Assembly Name          :: DAL-WCL_32_99C4R
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72.27x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042216475.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 10:52:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,688
            CDSs (total)                      :: 2,642
            Genes (coding)                    :: 2,603
            CDSs (with protein)               :: 2,603
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 8 of 39
            Pseudo Genes (incomplete)         :: 31 of 39
            Pseudo Genes (internal stop)      :: 6 of 39
            Pseudo Genes (multiple problems)  :: 6 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450672
                     /organism="Halosegnis sp."
                     /mol_type="genomic DNA"
                     /isolate="DAL-WCL_32_99C4R"
                     /isolation_source="water column"
                     /db_xref="taxon:2864959"
                     /environmental_sample
                     /geo_loc_name="Ethiopia:Danakil depression"
                     /lat_lon="14.05 N 40.39 E"
                     /collection_date="2019-01"
                     /metagenome_source="salt lake metagenome"
                     /metagenomic
WGS         JBDGTV010000001-JBDGTV010000026
WGS_SCAFLD  NZ_JBDGTV010000001-NZ_JBDGTV010000026
//
LOCUS       NZ_JAVYSZ010000000   1455075 bp    DNA     linear   ENV 23-NOV-2024
DEFINITION  MAG: Acidiplasma sp. isolate DRTY-19_202007_bins_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYSZ000000000
VERSION     NZ_JAVYSZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036836
            Assembly: GCF_038728925.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Acidiplasma sp. (hot springs metagenome)
  ORGANISM  Acidiplasma sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Acidiplasma.
REFERENCE   1  (bases 1 to 1455075)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1455075)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYSZ000000000.1.
            The Acidiplasma sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYSZ000000000.  This version of the project
            (01) has the accession number NZ_JAVYSZ010000000, and consists of
            sequences JAVYSZ010000001-JAVYSZ010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 159.12843551981786x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038728925.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:56:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,560
            CDSs (total)                      :: 1,513
            Genes (coding)                    :: 1,493
            CDSs (with protein)               :: 1,493
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 7 of 20
            Pseudo Genes (incomplete)         :: 18 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 7 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1455075
                     /organism="Acidiplasma sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-19_202007_bins_3"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1872114"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-19
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2020-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYSZ010000001-JAVYSZ010000033
WGS_SCAFLD  NZ_JAVYSZ010000001-NZ_JAVYSZ010000033
//
LOCUS       NZ_CAYAWY010000000   1218083 bp    DNA     linear   BCT 24-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0066, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAWY000000000
VERSION     NZ_CAYAWY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300883
            Assembly: GCF_964306365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1218083)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAWY000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAWY000000000.  This version of the
            project (01) has the accession number NZ_CAYAWY010000000, and
            consists of sequences CAYAWY010000001-CAYAWY010000067.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306365.1-RS_2024_11_08
            Annotation Date                   :: 11/08/2024 23:56:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,282
            CDSs (total)                      :: 1,248
            Genes (coding)                    :: 1,212
            CDSs (with protein)               :: 1,212
            Genes (RNA)                       :: 34
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 4 of 36
            Pseudo Genes (incomplete)         :: 31 of 36
            Pseudo Genes (internal stop)      :: 6 of 36
            Pseudo Genes (multiple problems)  :: 5 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1218083
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0066"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAWY010000001-CAYAWY010000067
WGS_SCAFLD  NZ_CAYAWY010000001-NZ_CAYAWY010000067
//
LOCUS       NZ_CAYAXJ010000000   1217626 bp    DNA     linear   BCT 24-NOV-2024
DEFINITION  Methanobrevibacter smithii isolate EST-A-0058, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAYAXJ000000000
VERSION     NZ_CAYAXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116300875
            Assembly: GCF_964306415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1217626)
  AUTHORS   Org,E., Krigul,K. and Kukushkina,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2024) EGCUT, Research group of microbiome, Riia
            23b, 51010 Tartu, Estonia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAXJ000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_CAYAXJ000000000.  This version of the
            project (01) has the accession number NZ_CAYAXJ010000000, and
            consists of sequences CAYAXJ010000001-CAYAXJ010000111.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964306415.1-RS_2024_11_07
            Annotation Date                   :: 11/07/2024 23:50:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,293
            CDSs (total)                      :: 1,267
            Genes (coding)                    :: 1,223
            CDSs (with protein)               :: 1,223
            Genes (RNA)                       :: 26
            tRNAs                             :: 24
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 7 of 44
            Pseudo Genes (incomplete)         :: 36 of 44
            Pseudo Genes (internal stop)      :: 4 of 44
            Pseudo Genes (multiple problems)  :: 3 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217626
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="EST-A-0058"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Estonia"
                     /collection_date="2017"
WGS         CAYAXJ010000001-CAYAXJ010000111
WGS_SCAFLD  NZ_CAYAXJ010000001-NZ_CAYAXJ010000111
//
LOCUS       NZ_JAVYOY010000000   1663580 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-1_201808_bins_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYOY000000000
VERSION     NZ_JAVYOY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036731
            Assembly: GCF_038733895.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 1663580)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663580)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYOY000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYOY000000000.  This version of the project
            (01) has the accession number NZ_JAVYOY010000000, and consists of
            sequences JAVYOY010000001-JAVYOY010000065.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 772.9671205408574x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038733895.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:45:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,883
            CDSs (total)                      :: 1,830
            Genes (coding)                    :: 1,803
            CDSs (with protein)               :: 1,803
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 5 of 27
            Pseudo Genes (incomplete)         :: 22 of 27
            Pseudo Genes (internal stop)      :: 2 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663580
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201808_bins_3"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYOY010000001-JAVYOY010000065
WGS_SCAFLD  NZ_JAVYOY010000001-NZ_JAVYOY010000065
//
LOCUS       NZ_JAVYWI010000000   2162479 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-2_202007_bins_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYWI000000000
VERSION     NZ_JAVYWI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036923
            Assembly: GCF_038727195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2162479)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162479)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYWI000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYWI000000000.  This version of the project
            (01) has the accession number NZ_JAVYWI010000000, and consists of
            sequences JAVYWI010000001-JAVYWI010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 258.3421435111641x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038727195.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:45:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,407
            CDSs (total)                      :: 2,356
            Genes (coding)                    :: 2,333
            CDSs (with protein)               :: 2,333
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 7 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 2 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162479
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_202007_bins_3"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2020-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYWI010000001-JAVYWI010000007
WGS_SCAFLD  NZ_JAVYWI010000001-NZ_JAVYWI010000007
//
LOCUS       NZ_JAVYTZ010000000   2169958 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-2_201901_bins_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYTZ000000000
VERSION     NZ_JAVYTZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036862
            Assembly: GCF_038728425.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2169958)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169958)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYTZ000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYTZ000000000.  This version of the project
            (01) has the accession number NZ_JAVYTZ010000000, and consists of
            sequences JAVYTZ010000001-JAVYTZ010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 309.44550473642175x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038728425.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:46:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,408
            CDSs (total)                      :: 2,357
            Genes (coding)                    :: 2,335
            CDSs (with protein)               :: 2,335
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169958
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_201901_bins_4"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYTZ010000001-JAVYTZ010000007
WGS_SCAFLD  NZ_JAVYTZ010000001-NZ_JAVYTZ010000007
//
LOCUS       NZ_JAWBBA010000000   2000833 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate ZZQ_202101_bins_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAWBBA000000000
VERSION     NZ_JAWBBA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038566
            Assembly: GCF_038815515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2000833)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000833)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWBBA000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWBBA000000000.  This version of the project
            (01) has the accession number NZ_JAWBBA010000000, and consists of
            sequences JAWBBA010000001-JAWBBA010000108.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 322.41465284979233x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038815515.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:49:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,300
            CDSs (total)                      :: 2,251
            Genes (coding)                    :: 2,193
            CDSs (with protein)               :: 2,193
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 8 of 58
            Pseudo Genes (incomplete)         :: 50 of 58
            Pseudo Genes (internal stop)      :: 4 of 58
            Pseudo Genes (multiple problems)  :: 4 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000833
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="ZZQ_202101_bins_3"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, ZZQ pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2021-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWBBA010000001-JAWBBA010000108
WGS_SCAFLD  NZ_JAWBBA010000001-NZ_JAWBBA010000108
//
LOCUS       NZ_JAVYVG010000000   2257762 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-2_201912_bins_21, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYVG000000000
VERSION     NZ_JAVYVG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036895
            Assembly: GCF_038727765.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2257762)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257762)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYVG000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYVG000000000.  This version of the project
            (01) has the accession number NZ_JAVYVG010000000, and consists of
            sequences JAVYVG010000001-JAVYVG010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 307.71782321326236x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038727765.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:46:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,535
            CDSs (total)                      :: 2,484
            Genes (coding)                    :: 2,459
            CDSs (with protein)               :: 2,459
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 19 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257762
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_201912_bins_21"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYVG010000001-JAVYVG010000019
WGS_SCAFLD  NZ_JAVYVG010000001-NZ_JAVYVG010000019
//
LOCUS       NZ_JAVYOJ010000000   1887692 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-1_201705_bins_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYOJ000000000
VERSION     NZ_JAVYOJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036716
            Assembly: GCF_038734555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 1887692)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887692)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYOJ000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYOJ000000000.  This version of the project
            (01) has the accession number NZ_JAVYOJ010000000, and consists of
            sequences JAVYOJ010000001-JAVYOJ010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13687.071011446056x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038734555.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:48:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,063
            CDSs (total)                      :: 2,011
            Genes (coding)                    :: 1,982
            CDSs (with protein)               :: 1,982
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 6 of 29
            Pseudo Genes (incomplete)         :: 23 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 2 of 29
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887692
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201705_bins_7"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYOJ010000001-JAVYOJ010000060
WGS_SCAFLD  NZ_JAVYOJ010000001-NZ_JAVYOJ010000060
//
LOCUS       NZ_JAVYTD010000000   2250600 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-2_201808_bins_2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYTD000000000
VERSION     NZ_JAVYTD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036840
            Assembly: GCF_038728865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2250600)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250600)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYTD000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYTD000000000.  This version of the project
            (01) has the accession number NZ_JAVYTD010000000, and consists of
            sequences JAVYTD010000001-JAVYTD010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 323.18199712237794x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038728865.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:50:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,554
            CDSs (total)                      :: 2,502
            Genes (coding)                    :: 2,479
            CDSs (with protein)               :: 2,479
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 7 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 2 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250600
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_201808_bins_2"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYTD010000001-JAVYTD010000011
WGS_SCAFLD  NZ_JAVYTD010000001-NZ_JAVYTD010000011
//
LOCUS       NZ_JAVZBF010000000   2261565 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-5_201808_bins_5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZBF000000000
VERSION     NZ_JAVZBF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037050
            Assembly: GCF_038874975.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2261565)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261565)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZBF000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZBF000000000.  This version of the project
            (01) has the accession number NZ_JAVZBF010000000, and consists of
            sequences JAVZBF010000001-JAVZBF010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.871267824800825x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038874975.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:57:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,554
            CDSs (total)                      :: 2,502
            Genes (coding)                    :: 2,477
            CDSs (with protein)               :: 2,477
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 19 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261565
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-5_201808_bins_5"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-5
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZBF010000001-JAVZBF010000014
WGS_SCAFLD  NZ_JAVZBF010000001-NZ_JAVZBF010000014
//
LOCUS       NZ_JAVZAO010000000   2175448 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-4_201912_bins_2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZAO000000000
VERSION     NZ_JAVZAO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037033
            Assembly: GCF_038875335.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2175448)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175448)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZAO000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZAO000000000.  This version of the project
            (01) has the accession number NZ_JAVZAO010000000, and consists of
            sequence JAVZAO010000001.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 71885.49121081346x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875335.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:58:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,401
            CDSs (total)                      :: 2,350
            Genes (coding)                    :: 2,329
            CDSs (with protein)               :: 2,329
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175448
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-4_201912_bins_2"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-4
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZAO010000001
WGS_SCAFLD  NZ_JAVZAO010000001
//
LOCUS       NZ_JAVZAW010000000   2131739 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-5_201803_bins_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZAW000000000
VERSION     NZ_JAVZAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037041
            Assembly: GCF_038875135.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2131739)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131739)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZAW000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZAW000000000.  This version of the project
            (01) has the accession number NZ_JAVZAW010000000, and consists of
            sequences JAVZAW010000001-JAVZAW010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 54.71372672746916x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875135.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:58:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,329
            Genes (coding)                    :: 2,305
            CDSs (with protein)               :: 2,305
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 7 of 24
            Pseudo Genes (incomplete)         :: 18 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 3 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131739
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-5_201803_bins_4"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-5
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZAW010000001-JAVZAW010000009
WGS_SCAFLD  NZ_JAVZAW010000001-NZ_JAVZAW010000009
//
LOCUS       NZ_JAVYRS010000000   2037399 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-10_202101_bins_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYRS000000000
VERSION     NZ_JAVYRS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036803
            Assembly: GCF_038730345.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2037399)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037399)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYRS000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYRS000000000.  This version of the project
            (01) has the accession number NZ_JAVYRS010000000, and consists of
            sequences JAVYRS010000001-JAVYRS010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 349.4846802349482x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038730345.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:02:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,288
            CDSs (total)                      :: 2,237
            Genes (coding)                    :: 2,218
            CDSs (with protein)               :: 2,218
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 6 of 19
            Pseudo Genes (incomplete)         :: 12 of 19
            Pseudo Genes (internal stop)      :: 3 of 19
            Pseudo Genes (multiple problems)  :: 2 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037399
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-10_202101_bins_4"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-10
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2021-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYRS010000001-JAVYRS010000006
WGS_SCAFLD  NZ_JAVYRS010000001-NZ_JAVYRS010000006
//
LOCUS       NZ_JAVZHZ010000000   2190559 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-6_201901_bins_21, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZHZ000000000
VERSION     NZ_JAVZHZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037226
            Assembly: GCF_038871475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2190559)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190559)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZHZ000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZHZ000000000.  This version of the project
            (01) has the accession number NZ_JAVZHZ010000000, and consists of
            sequences JAVZHZ010000001-JAVZHZ010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28.905684169739025x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038871475.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:14:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,414
            CDSs (total)                      :: 2,363
            Genes (coding)                    :: 2,341
            CDSs (with protein)               :: 2,341
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 8 of 22
            Pseudo Genes (incomplete)         :: 15 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190559
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201901_bins_21"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZHZ010000001-JAVZHZ010000002
WGS_SCAFLD  NZ_JAVZHZ010000001-NZ_JAVZHZ010000002
//
LOCUS       NZ_JAVYZH010000000   2160181 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-3_201907_bins_8, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYZH000000000
VERSION     NZ_JAVYZH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037000
            Assembly: GCF_038876035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2160181)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160181)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYZH000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYZH000000000.  This version of the project
            (01) has the accession number NZ_JAVYZH010000000, and consists of
            sequences JAVYZH010000001-JAVYZH010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83.57027987487334x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038876035.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:17:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,396
            CDSs (total)                      :: 2,345
            Genes (coding)                    :: 2,323
            CDSs (with protein)               :: 2,323
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160181
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201907_bins_8"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYZH010000001-JAVYZH010000006
WGS_SCAFLD  NZ_JAVYZH010000001-NZ_JAVYZH010000006
//
LOCUS       NZ_JAVZAE010000000   2159410 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-3_202007_bins_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZAE000000000
VERSION     NZ_JAVZAE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037023
            Assembly: GCF_038875575.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2159410)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159410)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZAE000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZAE000000000.  This version of the project
            (01) has the accession number NZ_JAVZAE010000000, and consists of
            sequences JAVZAE010000001-JAVZAE010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 73.39026268597767x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875575.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:18:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,401
            CDSs (total)                      :: 2,350
            Genes (coding)                    :: 2,326
            CDSs (with protein)               :: 2,326
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 7 of 24
            Pseudo Genes (incomplete)         :: 18 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 3 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159410
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_202007_bins_7"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2020-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZAE010000001-JAVZAE010000013
WGS_SCAFLD  NZ_JAVZAE010000001-NZ_JAVZAE010000013
//
LOCUS       NZ_JAVYQV010000000   2200199 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-1_201912_bins_10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYQV000000000
VERSION     NZ_JAVYQV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036780
            Assembly: GCF_038731385.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2200199)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200199)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYQV000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYQV000000000.  This version of the project
            (01) has the accession number NZ_JAVYQV010000000, and consists of
            sequences JAVYQV010000001-JAVYQV010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 752.0189734311339x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038731385.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:48:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,462
            CDSs (total)                      :: 2,412
            Genes (coding)                    :: 2,391
            CDSs (with protein)               :: 2,391
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200199
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201912_bins_10"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYQV010000001-JAVYQV010000011
WGS_SCAFLD  NZ_JAVYQV010000001-NZ_JAVYQV010000011
//
LOCUS       NZ_JAVYPH010000000   2293551 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-1_201808_bins_45, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYPH000000000
VERSION     NZ_JAVYPH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036740
            Assembly: GCF_038733405.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2293551)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293551)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYPH000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYPH000000000.  This version of the project
            (01) has the accession number NZ_JAVYPH010000000, and consists of
            sequences JAVYPH010000001-JAVYPH010000031.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2297.641112715998x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038733405.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:48:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,574
            CDSs (total)                      :: 2,520
            Genes (coding)                    :: 2,492
            CDSs (with protein)               :: 2,492
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 8 of 28
            Pseudo Genes (incomplete)         :: 21 of 28
            Pseudo Genes (internal stop)      :: 4 of 28
            Pseudo Genes (multiple problems)  :: 5 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293551
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201808_bins_45"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYPH010000001-JAVYPH010000031
WGS_SCAFLD  NZ_JAVYPH010000001-NZ_JAVYPH010000031
//
LOCUS       NZ_JAVZFJ010000000   2189137 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-6_201803_bins_5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZFJ000000000
VERSION     NZ_JAVZFJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037158
            Assembly: GCF_038872895.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2189137)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189137)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZFJ000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZFJ000000000.  This version of the project
            (01) has the accession number NZ_JAVZFJ010000000, and consists of
            sequences JAVZFJ010000001-JAVZFJ010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.204759469433974x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038872895.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:51:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,429
            CDSs (total)                      :: 2,377
            Genes (coding)                    :: 2,352
            CDSs (with protein)               :: 2,352
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 19 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189137
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201803_bins_5"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZFJ010000001-JAVZFJ010000013
WGS_SCAFLD  NZ_JAVZFJ010000001-NZ_JAVZFJ010000013
//
LOCUS       NZ_JAVZDX010000000   2175167 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-6_201709_bins_45, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZDX000000000
VERSION     NZ_JAVZDX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037120
            Assembly: GCF_038873635.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2175167)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175167)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZDX000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZDX000000000.  This version of the project
            (01) has the accession number NZ_JAVZDX010000000, and consists of
            sequences JAVZDX010000001-JAVZDX010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.36372646501772x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038873635.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:53:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,424
            CDSs (total)                      :: 2,373
            Genes (coding)                    :: 2,349
            CDSs (with protein)               :: 2,349
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 7 of 24
            Pseudo Genes (incomplete)         :: 18 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 3 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175167
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201709_bins_45"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-09"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZDX010000001-JAVZDX010000006
WGS_SCAFLD  NZ_JAVZDX010000001-NZ_JAVZDX010000006
//
LOCUS       NZ_JAVYRN010000000   2115407 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-10_201912_bins_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYRN000000000
VERSION     NZ_JAVYRN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036798
            Assembly: GCF_038730595.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2115407)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115407)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYRN000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYRN000000000.  This version of the project
            (01) has the accession number NZ_JAVYRN010000000, and consists of
            sequences JAVYRN010000001-JAVYRN010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 351.4927459418995x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038730595.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:01:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,363
            CDSs (total)                      :: 2,312
            Genes (coding)                    :: 2,293
            CDSs (with protein)               :: 2,293
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 7 of 19
            Pseudo Genes (incomplete)         :: 13 of 19
            Pseudo Genes (internal stop)      :: 2 of 19
            Pseudo Genes (multiple problems)  :: 3 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115407
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-10_201912_bins_7"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-10
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYRN010000001-JAVYRN010000004
WGS_SCAFLD  NZ_JAVYRN010000001-NZ_JAVYRN010000004
//
LOCUS       NZ_JAVZAG010000000   2170393 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-4_201901_bins_10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZAG000000000
VERSION     NZ_JAVZAG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037025
            Assembly: GCF_038875555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2170393)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2170393)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZAG000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZAG000000000.  This version of the project
            (01) has the accession number NZ_JAVZAG010000000, and consists of
            sequences JAVZAG010000001-JAVZAG010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 71.82331821238972x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875555.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:17:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,415
            CDSs (total)                      :: 2,364
            Genes (coding)                    :: 2,343
            CDSs (with protein)               :: 2,343
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170393
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-4_201901_bins_10"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-4
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZAG010000001-JAVZAG010000009
WGS_SCAFLD  NZ_JAVZAG010000001-NZ_JAVZAG010000009
//
LOCUS       NZ_JAWBPN010000000   1872223 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Nitrososphaera sp. isolate HNT-4_202101_bins_24, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAWBPN000000000
VERSION     NZ_JAWBPN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36039091
            Assembly: GCF_038825055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrososphaera sp. (hot springs metagenome)
  ORGANISM  Nitrososphaera sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Nitrososphaera.
REFERENCE   1  (bases 1 to 1872223)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872223)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWBPN000000000.1.
            The Nitrososphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWBPN000000000.  This version of the project
            (01) has the accession number NZ_JAWBPN010000000, and consists of
            sequences JAWBPN010000001-JAWBPN010000055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 166.02295675053148x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038825055.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:11:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,336
            CDSs (total)                      :: 2,287
            Genes (coding)                    :: 2,261
            CDSs (with protein)               :: 2,261
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 1 of 26
            Pseudo Genes (incomplete)         :: 25 of 26
            Pseudo Genes (internal stop)      :: 1 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872223
                     /organism="Nitrososphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="HNT-4_202101_bins_24"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1971748"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, HNT-4
                     pool"
                     /lat_lon="25.36 N 98.14 E"
                     /collection_date="2021-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWBPN010000001-JAWBPN010000055
WGS_SCAFLD  NZ_JAWBPN010000001-NZ_JAWBPN010000055
//
LOCUS       NZ_JAVYYP010000000   2153090 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-3_201901_bins_22, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYYP000000000
VERSION     NZ_JAVYYP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036982
            Assembly: GCF_038876375.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2153090)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153090)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYYP000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYYP000000000.  This version of the project
            (01) has the accession number NZ_JAVYYP010000000, and consists of
            sequences JAVYYP010000001-JAVYYP010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 128.08521069010587x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038876375.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:21:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,405
            CDSs (total)                      :: 2,352
            Genes (coding)                    :: 2,330
            CDSs (with protein)               :: 2,330
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 6 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153090
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201901_bins_22"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYYP010000001-JAVYYP010000011
WGS_SCAFLD  NZ_JAVYYP010000001-NZ_JAVYYP010000011
//
LOCUS       NZ_JAVZXK010000000   2125462 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-9_202101_bins_13, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZXK000000000
VERSION     NZ_JAVZXK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038714
            Assembly: GCF_038877515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2125462)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125462)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZXK000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZXK000000000.  This version of the project
            (01) has the accession number NZ_JAVZXK010000000, and consists of
            sequences JAVZXK010000001-JAVZXK010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 125.75050307536014x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038877515.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:20:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,399
            CDSs (total)                      :: 2,346
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 9 of 30
            Pseudo Genes (incomplete)         :: 21 of 30
            Pseudo Genes (internal stop)      :: 7 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125462
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-9_202101_bins_13"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-9
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2021-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZXK010000001-JAVZXK010000011
WGS_SCAFLD  NZ_JAVZXK010000001-NZ_JAVZXK010000011
//
LOCUS       NZ_JAVZWY010000000   2197908 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-9_201901_bins_6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZWY000000000
VERSION     NZ_JAVZWY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038702
            Assembly: GCF_038877735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2197908)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197908)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZWY000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZWY000000000.  This version of the project
            (01) has the accession number NZ_JAVZWY010000000, and consists of
            sequences JAVZWY010000001-JAVZWY010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 268.88986670232856x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038877735.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:20:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,435
            CDSs (total)                      :: 2,384
            Genes (coding)                    :: 2,363
            CDSs (with protein)               :: 2,363
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 8 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197908
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-9_201901_bins_6"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-9
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZWY010000001-JAVZWY010000007
WGS_SCAFLD  NZ_JAVZWY010000001-NZ_JAVZWY010000007
//
LOCUS       NZ_JAVYWW010000000   1696788 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-3_201705_bins_13, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYWW000000000
VERSION     NZ_JAVYWW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036937
            Assembly: GCF_038877315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 1696788)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696788)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYWW000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYWW000000000.  This version of the project
            (01) has the accession number NZ_JAVYWW010000000, and consists of
            sequences JAVYWW010000001-JAVYWW010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 573.7072606346386x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038877315.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:20:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,883
            CDSs (total)                      :: 1,832
            Genes (coding)                    :: 1,811
            CDSs (with protein)               :: 1,811
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 6 of 21
            Pseudo Genes (incomplete)         :: 16 of 21
            Pseudo Genes (internal stop)      :: 1 of 21
            Pseudo Genes (multiple problems)  :: 1 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696788
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201705_bins_13"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYWW010000001-JAVYWW010000024
WGS_SCAFLD  NZ_JAVYWW010000001-NZ_JAVYWW010000024
//
LOCUS       NZ_JAVZQS010000000   2171442 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-7_201803_bins_38, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZQS000000000
VERSION     NZ_JAVZQS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037453
            Assembly: GCF_038880955.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2171442)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171442)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZQS000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZQS000000000.  This version of the project
            (01) has the accession number NZ_JAVZQS010000000, and consists of
            sequences JAVZQS010000001-JAVZQS010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.946172099566407x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038880955.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:26:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,408
            CDSs (total)                      :: 2,357
            Genes (coding)                    :: 2,335
            CDSs (with protein)               :: 2,335
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 8 of 22
            Pseudo Genes (incomplete)         :: 15 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171442
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-7_201803_bins_38"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-7
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZQS010000001-JAVZQS010000002
WGS_SCAFLD  NZ_JAVZQS010000001-NZ_JAVZQS010000002
//
LOCUS       NZ_JAVZWA010000000   2176000 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-9_201709_bins_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZWA000000000
VERSION     NZ_JAVZWA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038678
            Assembly: GCF_038878235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2176000)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176000)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZWA000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZWA000000000.  This version of the project
            (01) has the accession number NZ_JAVZWA010000000, and consists of
            sequences JAVZWA010000001-JAVZWA010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 116.47653920022918x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038878235.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:24:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,422
            CDSs (total)                      :: 2,371
            Genes (coding)                    :: 2,349
            CDSs (with protein)               :: 2,349
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176000
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-9_201709_bins_4"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-9
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-09"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZWA010000001-JAVZWA010000003
WGS_SCAFLD  NZ_JAVZWA010000001-NZ_JAVZWA010000003
//
LOCUS       NZ_JAVZRX010000000   2195207 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-7_201912_bins_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZRX000000000
VERSION     NZ_JAVZRX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037484
            Assembly: GCF_038880335.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2195207)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195207)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZRX000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZRX000000000.  This version of the project
            (01) has the accession number NZ_JAVZRX010000000, and consists of
            sequences JAVZRX010000001-JAVZRX010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.684851354717637x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038880335.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:27:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,459
            CDSs (total)                      :: 2,408
            Genes (coding)                    :: 2,381
            CDSs (with protein)               :: 2,381
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 8 of 27
            Pseudo Genes (incomplete)         :: 19 of 27
            Pseudo Genes (internal stop)      :: 4 of 27
            Pseudo Genes (multiple problems)  :: 4 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195207
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-7_201912_bins_3"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-7
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZRX010000001-JAVZRX010000013
WGS_SCAFLD  NZ_JAVZRX010000001-NZ_JAVZRX010000013
//
LOCUS       NZ_JAVZWL010000000   2190358 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-9_201803_bins_8, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZWL000000000
VERSION     NZ_JAVZWL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038689
            Assembly: GCF_038877995.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2190358)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190358)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZWL000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZWL000000000.  This version of the project
            (01) has the accession number NZ_JAVZWL010000000, and consists of
            sequences JAVZWL010000001-JAVZWL010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.102799100640688x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038877995.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:23:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,419
            CDSs (total)                      :: 2,368
            Genes (coding)                    :: 2,345
            CDSs (with protein)               :: 2,345
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 8 of 23
            Pseudo Genes (incomplete)         :: 16 of 23
            Pseudo Genes (internal stop)      :: 2 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190358
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-9_201803_bins_8"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-9
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZWL010000001-JAVZWL010000002
WGS_SCAFLD  NZ_JAVZWL010000001-NZ_JAVZWL010000002
//
LOCUS       NZ_JAVZMS010000000   2158120 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-6_201912_bins_23, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZMS000000000
VERSION     NZ_JAVZMS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037349
            Assembly: GCF_038883195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2158120)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158120)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZMS000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZMS000000000.  This version of the project
            (01) has the accession number NZ_JAVZMS010000000, and consists of
            sequences JAVZMS010000001-JAVZMS010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.49804432340989x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038883195.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:26:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,393
            CDSs (total)                      :: 2,343
            Genes (coding)                    :: 2,319
            CDSs (with protein)               :: 2,319
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 8 of 24
            Pseudo Genes (incomplete)         :: 17 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 3 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158120
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201912_bins_23"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZMS010000001-JAVZMS010000004
WGS_SCAFLD  NZ_JAVZMS010000001-NZ_JAVZMS010000004
//
LOCUS       NZ_JAVZXG010000000   2156211 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-9_201912_bins_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZXG000000000
VERSION     NZ_JAVZXG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038710
            Assembly: GCF_038877595.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2156211)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156211)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZXG000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZXG000000000.  This version of the project
            (01) has the accession number NZ_JAVZXG010000000, and consists of
            sequences JAVZXG010000001-JAVZXG010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 189.13031674774754x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038877595.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:21:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,395
            CDSs (total)                      :: 2,344
            Genes (coding)                    :: 2,323
            CDSs (with protein)               :: 2,323
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156211
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-9_201912_bins_7"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-9
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZXG010000001-JAVZXG010000005
WGS_SCAFLD  NZ_JAVZXG010000001-NZ_JAVZXG010000005
//
LOCUS       NZ_JAVYXT010000000   2096224 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-3_201803_bins_12, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYXT000000000
VERSION     NZ_JAVYXT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036960
            Assembly: GCF_038876855.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2096224)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096224)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYXT000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYXT000000000.  This version of the project
            (01) has the accession number NZ_JAVYXT010000000, and consists of
            sequences JAVYXT010000001-JAVYXT010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 229.5652168978073x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038876855.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:20:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,342
            CDSs (total)                      :: 2,293
            Genes (coding)                    :: 2,272
            CDSs (with protein)               :: 2,272
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 5 of 21
            Pseudo Genes (incomplete)         :: 17 of 21
            Pseudo Genes (internal stop)      :: 1 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096224
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201803_bins_12"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYXT010000001-JAVYXT010000022
WGS_SCAFLD  NZ_JAVYXT010000001-NZ_JAVYXT010000022
//
LOCUS       NZ_JAVZWO010000000   2180010 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-9_201808_bins_2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZWO000000000
VERSION     NZ_JAVZWO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038692
            Assembly: GCF_038877935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2180010)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180010)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZWO000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZWO000000000.  This version of the project
            (01) has the accession number NZ_JAVZWO010000000, and consists of
            sequences JAVZWO010000001-JAVZWO010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 302.05192678997275x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038877935.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:23:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,412
            CDSs (total)                      :: 2,361
            Genes (coding)                    :: 2,338
            CDSs (with protein)               :: 2,338
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 7 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 2 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180010
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-9_201808_bins_2"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-9
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZWO010000001-JAVZWO010000006
WGS_SCAFLD  NZ_JAVZWO010000001-NZ_JAVZWO010000006
//
LOCUS       NZ_JAWARS010000000   2043768 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate ZMQL_201912_bins_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAWARS000000000
VERSION     NZ_JAWARS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038324
            Assembly: GCF_038893275.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2043768)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043768)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWARS000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWARS000000000.  This version of the project
            (01) has the accession number NZ_JAWARS010000000, and consists of
            sequences JAWARS010000001-JAWARS010000028.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 278.83749300780744x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038893275.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:27:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,278
            CDSs (total)                      :: 2,229
            Genes (coding)                    :: 2,204
            CDSs (with protein)               :: 2,204
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 4 of 25
            Pseudo Genes (incomplete)         :: 20 of 25
            Pseudo Genes (internal stop)      :: 3 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043768
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="ZMQL_201912_bins_7"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, ZMQL pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWARS010000001-JAWARS010000028
WGS_SCAFLD  NZ_JAWARS010000001-NZ_JAWARS010000028
//
LOCUS       NZ_JAVZPE010000000   2164042 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-6_202007_bins_5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZPE000000000
VERSION     NZ_JAVZPE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037413
            Assembly: GCF_038881735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2164042)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164042)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZPE000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZPE000000000.  This version of the project
            (01) has the accession number NZ_JAVZPE010000000, and consists of
            sequences JAVZPE010000001-JAVZPE010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24.702560344557458x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038881735.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:26:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,401
            CDSs (total)                      :: 2,349
            Genes (coding)                    :: 2,330
            CDSs (with protein)               :: 2,330
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 7 of 19
            Pseudo Genes (incomplete)         :: 13 of 19
            Pseudo Genes (internal stop)      :: 2 of 19
            Pseudo Genes (multiple problems)  :: 3 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164042
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_202007_bins_5"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2020-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZPE010000001-JAVZPE010000004
WGS_SCAFLD  NZ_JAVZPE010000001-NZ_JAVZPE010000004
//
LOCUS       NZ_JAVZQD010000000   2249924 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-7_201709_bins_35, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZQD000000000
VERSION     NZ_JAVZQD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037438
            Assembly: GCF_038881235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2249924)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2249924)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZQD000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZQD000000000.  This version of the project
            (01) has the accession number NZ_JAVZQD010000000, and consists of
            sequences JAVZQD010000001-JAVZQD010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22.77970877724588x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038881235.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:26:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,475
            CDSs (total)                      :: 2,422
            Genes (coding)                    :: 2,398
            CDSs (with protein)               :: 2,398
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 7 of 24
            Pseudo Genes (incomplete)         :: 18 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 3 of 24
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249924
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-7_201709_bins_35"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-7
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-09"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZQD010000001-JAVZQD010000014
WGS_SCAFLD  NZ_JAVZQD010000001-NZ_JAVZQD010000014
//
LOCUS       NZ_JAVYYK010000000   2178609 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-3_201808_bins_9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYYK000000000
VERSION     NZ_JAVYYK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036977
            Assembly: GCF_038876495.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2178609)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178609)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYYK000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYYK000000000.  This version of the project
            (01) has the accession number NZ_JAVYYK010000000, and consists of
            sequences JAVYYK010000001-JAVYYK010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 169.88649481562672x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038876495.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:27:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,429
            CDSs (total)                      :: 2,378
            Genes (coding)                    :: 2,356
            CDSs (with protein)               :: 2,356
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178609
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201808_bins_9"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYYK010000001-JAVYYK010000003
WGS_SCAFLD  NZ_JAVYYK010000001-NZ_JAVYYK010000003
//
LOCUS       NZ_JAVZTK010000000   2173266 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-8_201803_bins_1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZTK000000000
VERSION     NZ_JAVZTK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037523
            Assembly: GCF_038879555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2173266)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173266)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZTK000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZTK000000000.  This version of the project
            (01) has the accession number NZ_JAVZTK010000000, and consists of
            sequences JAVZTK010000001-JAVZTK010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.31723154723729x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038879555.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:26:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,431
            CDSs (total)                      :: 2,380
            Genes (coding)                    :: 2,355
            CDSs (with protein)               :: 2,355
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 19 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173266
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201803_bins_1"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZTK010000001-JAVZTK010000012
WGS_SCAFLD  NZ_JAVZTK010000001-NZ_JAVZTK010000012
//
LOCUS       NZ_JAVZUH010000000   2178566 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-8_201808_bins_11, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZUH000000000
VERSION     NZ_JAVZUH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037546
            Assembly: GCF_038879175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2178566)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178566)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZUH000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZUH000000000.  This version of the project
            (01) has the accession number NZ_JAVZUH010000000, and consists of
            sequences JAVZUH010000001-JAVZUH010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.217253548936748x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038879175.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:25:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,444
            CDSs (total)                      :: 2,392
            Genes (coding)                    :: 2,368
            CDSs (with protein)               :: 2,368
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 7 of 24
            Pseudo Genes (incomplete)         :: 18 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 3 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178566
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201808_bins_11"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZUH010000001-JAVZUH010000008
WGS_SCAFLD  NZ_JAVZUH010000001-NZ_JAVZUH010000008
//
LOCUS       NZ_JAVZKY010000000   2156509 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-6_201907_bins_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZKY000000000
VERSION     NZ_JAVZKY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037303
            Assembly: GCF_038884055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2156509)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156509)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZKY000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZKY000000000.  This version of the project
            (01) has the accession number NZ_JAVZKY010000000, and consists of
            sequences JAVZKY010000001-JAVZKY010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28.18633904732091x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038884055.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:28:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,400
            CDSs (total)                      :: 2,349
            Genes (coding)                    :: 2,326
            CDSs (with protein)               :: 2,326
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 7 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 2 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156509
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201907_bins_3"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZKY010000001-JAVZKY010000007
WGS_SCAFLD  NZ_JAVZKY010000001-NZ_JAVZKY010000007
//
LOCUS       NZ_JAVZRV010000000   2123705 bp    DNA     linear   ENV 24-NOV-2024
DEFINITION  MAG: Metallosphaera sp. isolate DRTY-7_201907_bins_7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZRV000000000
VERSION     NZ_JAVZRV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037482
            Assembly: GCF_038880315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera sp. (hot springs metagenome)
  ORGANISM  Metallosphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2123705)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123705)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZRV000000000.1.
            The Metallosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZRV000000000.  This version of the project
            (01) has the accession number NZ_JAVZRV010000000, and consists of
            sequences JAVZRV010000001-JAVZRV010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.779307773988826x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038880315.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:26:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,382
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,309
            CDSs (with protein)               :: 2,309
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123705
                     /organism="Metallosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-7_201907_bins_7"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2020860"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-7
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZRV010000001-JAVZRV010000002
WGS_SCAFLD  NZ_JAVZRV010000001-NZ_JAVZRV010000002
//
LOCUS       NZ_JAWBAG010000000   2016084 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Pyrobaculum sp. isolate ZZQ_201901_bins_20, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAWBAG000000000
VERSION     NZ_JAWBAG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038546
            Assembly: GCF_038816675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2016084)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016084)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWBAG000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWBAG000000000.  This version of the project
            (01) has the accession number NZ_JAWBAG010000000, and consists of
            sequences JAWBAG010000001-JAWBAG010000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13474.83059064132x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038816675.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:15:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,418
            CDSs (total)                      :: 2,372
            Genes (coding)                    :: 2,315
            CDSs (with protein)               :: 2,315
            Genes (RNA)                       :: 46
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 45
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 12 of 57
            Pseudo Genes (incomplete)         :: 44 of 57
            Pseudo Genes (internal stop)      :: 9 of 57
            Pseudo Genes (multiple problems)  :: 6 of 57
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016084
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="ZZQ_201901_bins_20"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, ZZQ pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWBAG010000001-JAWBAG010000047
WGS_SCAFLD  NZ_JAWBAG010000001-NZ_JAWBAG010000047
//
LOCUS       NZ_JAVZUY010000000   2038473 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Pyrobaculum sp. isolate DRTY-8_201808_bins_34, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZUY000000000
VERSION     NZ_JAVZUY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037563
            Assembly: GCF_038878795.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2038473)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038473)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZUY000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZUY000000000.  This version of the project
            (01) has the accession number NZ_JAVZUY010000000, and consists of
            sequences JAVZUY010000001-JAVZUY010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 114.20314023557346x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038878795.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:41:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,428
            CDSs (total)                      :: 2,379
            Genes (coding)                    :: 2,322
            CDSs (with protein)               :: 2,322
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 11 of 57
            Pseudo Genes (incomplete)         :: 48 of 57
            Pseudo Genes (internal stop)      :: 7 of 57
            Pseudo Genes (multiple problems)  :: 7 of 57
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038473
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201808_bins_34"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZUY010000001-JAVZUY010000072
WGS_SCAFLD  NZ_JAVZUY010000001-NZ_JAVZUY010000072
//
LOCUS       NZ_JAVZUC010000000   2215465 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Pyrobaculum sp. isolate DRTY-8_201803_bins_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZUC000000000
VERSION     NZ_JAVZUC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037541
            Assembly: GCF_038879155.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2215465)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215465)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZUC000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZUC000000000.  This version of the project
            (01) has the accession number NZ_JAVZUC010000000, and consists of
            sequences JAVZUC010000001-JAVZUC010000089.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19728.507539680766x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038879155.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:49:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,661
            CDSs (total)                      :: 2,609
            Genes (coding)                    :: 2,546
            CDSs (with protein)               :: 2,546
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 11 of 63
            Pseudo Genes (incomplete)         :: 51 of 63
            Pseudo Genes (internal stop)      :: 9 of 63
            Pseudo Genes (multiple problems)  :: 6 of 63
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215465
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201803_bins_4"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZUC010000001-JAVZUC010000089
WGS_SCAFLD  NZ_JAVZUC010000001-NZ_JAVZUC010000089
//
LOCUS       NZ_JAVYQA010000000   2576362 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-1_201901_bins_26, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYQA000000000
VERSION     NZ_JAVYQA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036759
            Assembly: GCF_038732325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2576362)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2576362)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYQA000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYQA000000000.  This version of the project
            (01) has the accession number NZ_JAVYQA010000000, and consists of
            sequences JAVYQA010000001-JAVYQA010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 548.2001965920216x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038732325.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:47:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,784
            CDSs (total)                      :: 2,734
            Genes (coding)                    :: 2,609
            CDSs (with protein)               :: 2,609
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 71 of 125
            Pseudo Genes (incomplete)         :: 72 of 125
            Pseudo Genes (internal stop)      :: 27 of 125
            Pseudo Genes (multiple problems)  :: 41 of 125
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576362
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201901_bins_26"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYQA010000001-JAVYQA010000019
WGS_SCAFLD  NZ_JAVYQA010000001-NZ_JAVYQA010000019
//
LOCUS       NZ_JAVYRA010000000   2534883 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-1_201912_bins_21, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYRA000000000
VERSION     NZ_JAVYRA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036785
            Assembly: GCF_038731165.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2534883)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534883)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYRA000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYRA000000000.  This version of the project
            (01) has the accession number NZ_JAVYRA010000000, and consists of
            sequences JAVYRA010000001-JAVYRA010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 282.8432851309007x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038731165.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:48:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,721
            CDSs (total)                      :: 2,671
            Genes (coding)                    :: 2,554
            CDSs (with protein)               :: 2,554
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 65 of 117
            Pseudo Genes (incomplete)         :: 62 of 117
            Pseudo Genes (internal stop)      :: 28 of 117
            Pseudo Genes (multiple problems)  :: 35 of 117
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534883
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201912_bins_21"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYRA010000001-JAVYRA010000019
WGS_SCAFLD  NZ_JAVYRA010000001-NZ_JAVYRA010000019
//
LOCUS       NZ_JAVYRO010000000   2482849 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-10_201912_bins_9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYRO000000000
VERSION     NZ_JAVYRO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036799
            Assembly: GCF_038730465.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2482849)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482849)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYRO000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYRO000000000.  This version of the project
            (01) has the accession number NZ_JAVYRO010000000, and consists of
            sequences JAVYRO010000001-JAVYRO010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 269.880668338632x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038730465.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:47:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,668
            CDSs (total)                      :: 2,618
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 67 of 118
            Pseudo Genes (incomplete)         :: 67 of 118
            Pseudo Genes (internal stop)      :: 25 of 118
            Pseudo Genes (multiple problems)  :: 37 of 118
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482849
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-10_201912_bins_9"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-10
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYRO010000001-JAVYRO010000022
WGS_SCAFLD  NZ_JAVYRO010000001-NZ_JAVYRO010000022
//
LOCUS       NZ_JAWBBD010000000   2506984 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate ZZQ_202101_bins_6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAWBBD000000000
VERSION     NZ_JAWBBD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038569
            Assembly: GCF_038815125.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2506984)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506984)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWBBD000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWBBD000000000.  This version of the project
            (01) has the accession number NZ_JAWBBD010000000, and consists of
            sequences JAWBBD010000001-JAWBBD010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.184699664043745x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038815125.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:51:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,716
            CDSs (total)                      :: 2,666
            Genes (coding)                    :: 2,535
            CDSs (with protein)               :: 2,535
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 70 of 131
            Pseudo Genes (incomplete)         :: 79 of 131
            Pseudo Genes (internal stop)      :: 26 of 131
            Pseudo Genes (multiple problems)  :: 41 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506984
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="ZZQ_202101_bins_6"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, ZZQ pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2021-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWBBD010000001-JAWBBD010000026
WGS_SCAFLD  NZ_JAWBBD010000001-NZ_JAWBBD010000026
//
LOCUS       NZ_JAVYUE010000000   2620834 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-2_201901_bins_48, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYUE000000000
VERSION     NZ_JAVYUE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036867
            Assembly: GCF_038728345.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2620834)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620834)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYUE000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYUE000000000.  This version of the project
            (01) has the accession number NZ_JAVYUE010000000, and consists of
            sequences JAVYUE010000001-JAVYUE010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22.512005147420215x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038728345.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:45:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,827
            CDSs (total)                      :: 2,777
            Genes (coding)                    :: 2,647
            CDSs (with protein)               :: 2,647
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 69 of 130
            Pseudo Genes (incomplete)         :: 75 of 130
            Pseudo Genes (internal stop)      :: 28 of 130
            Pseudo Genes (multiple problems)  :: 38 of 130
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620834
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_201901_bins_48"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYUE010000001-JAVYUE010000022
WGS_SCAFLD  NZ_JAVYUE010000001-NZ_JAVYUE010000022
//
LOCUS       NZ_JAVYOG010000000   2343540 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-1_201705_bins_32, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYOG000000000
VERSION     NZ_JAVYOG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036713
            Assembly: GCF_038734715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2343540)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343540)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYOG000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYOG000000000.  This version of the project
            (01) has the accession number NZ_JAVYOG010000000, and consists of
            sequences JAVYOG010000001-JAVYOG010000028.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 295.05922464012235x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038734715.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:48:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,569
            CDSs (total)                      :: 2,519
            Genes (coding)                    :: 2,395
            CDSs (with protein)               :: 2,395
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 66 of 124
            Pseudo Genes (incomplete)         :: 74 of 124
            Pseudo Genes (internal stop)      :: 24 of 124
            Pseudo Genes (multiple problems)  :: 36 of 124
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343540
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201705_bins_32"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYOG010000001-JAVYOG010000028
WGS_SCAFLD  NZ_JAVYOG010000001-NZ_JAVYOG010000028
//
LOCUS       NZ_JAVYZM010000000   2597759 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-3_201912_bins_13, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYZM000000000
VERSION     NZ_JAVYZM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037005
            Assembly: GCF_038875935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2597759)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597759)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYZM000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYZM000000000.  This version of the project
            (01) has the accession number NZ_JAVYZM010000000, and consists of
            sequences JAVYZM010000001-JAVYZM010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 332.1214936875235x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875935.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:20:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,802
            CDSs (total)                      :: 2,751
            Genes (coding)                    :: 2,621
            CDSs (with protein)               :: 2,621
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 74 of 130
            Pseudo Genes (incomplete)         :: 76 of 130
            Pseudo Genes (internal stop)      :: 28 of 130
            Pseudo Genes (multiple problems)  :: 44 of 130
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597759
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201912_bins_13"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYZM010000001-JAVYZM010000020
WGS_SCAFLD  NZ_JAVYZM010000001-NZ_JAVYZM010000020
//
LOCUS       NZ_JAVYPI010000000   2823618 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-1_201808_bins_46, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYPI000000000
VERSION     NZ_JAVYPI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036741
            Assembly: GCF_038733365.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2823618)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823618)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYPI000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYPI000000000.  This version of the project
            (01) has the accession number NZ_JAVYPI010000000, and consists of
            sequences JAVYPI010000001-JAVYPI010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 763.9869364517641x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038733365.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:17:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,076
            CDSs (total)                      :: 3,023
            Genes (coding)                    :: 2,877
            CDSs (with protein)               :: 2,877
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 73 of 146
            Pseudo Genes (incomplete)         :: 89 of 146
            Pseudo Genes (internal stop)      :: 29 of 146
            Pseudo Genes (multiple problems)  :: 41 of 146
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823618
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201808_bins_46"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYPI010000001-JAVYPI010000048
WGS_SCAFLD  NZ_JAVYPI010000001-NZ_JAVYPI010000048
//
LOCUS       NZ_JAVYZA010000000   2621736 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-3_201907_bins_12, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYZA000000000
VERSION     NZ_JAVYZA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036993
            Assembly: GCF_038876135.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2621736)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621736)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYZA000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYZA000000000.  This version of the project
            (01) has the accession number NZ_JAVYZA010000000, and consists of
            sequences JAVYZA010000001-JAVYZA010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 364.15187367038965x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038876135.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:18:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,815
            CDSs (total)                      :: 2,765
            Genes (coding)                    :: 2,637
            CDSs (with protein)               :: 2,637
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 74 of 128
            Pseudo Genes (incomplete)         :: 72 of 128
            Pseudo Genes (internal stop)      :: 28 of 128
            Pseudo Genes (multiple problems)  :: 42 of 128
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621736
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201907_bins_12"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYZA010000001-JAVYZA010000018
WGS_SCAFLD  NZ_JAVYZA010000001-NZ_JAVYZA010000018
//
LOCUS       NZ_JAVYWA010000000   2363791 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-2_202007_bins_22, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYWA000000000
VERSION     NZ_JAVYWA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036915
            Assembly: GCF_038727355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2363791)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2363791)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYWA000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYWA000000000.  This version of the project
            (01) has the accession number NZ_JAVYWA010000000, and consists of
            sequences JAVYWA010000001-JAVYWA010000015.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24625.871766029246x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038727355.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:45:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,602
            CDSs (total)                      :: 2,552
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 63 of 111
            Pseudo Genes (incomplete)         :: 62 of 111
            Pseudo Genes (internal stop)      :: 25 of 111
            Pseudo Genes (multiple problems)  :: 35 of 111
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363791
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_202007_bins_22"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2020-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYWA010000001-JAVYWA010000015
WGS_SCAFLD  NZ_JAVYWA010000001-NZ_JAVYWA010000015
//
LOCUS       NZ_JAVYVP010000000   2643042 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-2_201912_bins_9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYVP000000000
VERSION     NZ_JAVYVP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036904
            Assembly: GCF_038727555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2643042)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2643042)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYVP000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYVP000000000.  This version of the project
            (01) has the accession number NZ_JAVYVP010000000, and consists of
            sequences JAVYVP010000001-JAVYVP010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.088400712578917x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038727555.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:46:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,847
            CDSs (total)                      :: 2,797
            Genes (coding)                    :: 2,666
            CDSs (with protein)               :: 2,666
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 71 of 131
            Pseudo Genes (incomplete)         :: 77 of 131
            Pseudo Genes (internal stop)      :: 27 of 131
            Pseudo Genes (multiple problems)  :: 40 of 131
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2643042
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_201912_bins_9"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYVP010000001-JAVYVP010000027
WGS_SCAFLD  NZ_JAVYVP010000001-NZ_JAVYVP010000027
//
LOCUS       NZ_JAVZBI010000000   1738411 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-5_201912_bins_10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZBI000000000
VERSION     NZ_JAVZBI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037053
            Assembly: GCF_038874935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 1738411)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738411)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZBI000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZBI000000000.  This version of the project
            (01) has the accession number NZ_JAVZBI010000000, and consists of
            sequences JAVZBI010000001-JAVZBI010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 314.5225854179733x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038874935.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:51:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,932
            CDSs (total)                      :: 1,880
            Genes (coding)                    :: 1,821
            CDSs (with protein)               :: 1,821
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 29 of 59
            Pseudo Genes (incomplete)         :: 39 of 59
            Pseudo Genes (internal stop)      :: 13 of 59
            Pseudo Genes (multiple problems)  :: 20 of 59
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738411
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-5_201912_bins_10"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-5
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZBI010000001-JAVZBI010000013
WGS_SCAFLD  NZ_JAVZBI010000001-NZ_JAVZBI010000013
//
LOCUS       NZ_JAVZAZ010000000   2453485 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-5_201803_bins_9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZAZ000000000
VERSION     NZ_JAVZAZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037044
            Assembly: GCF_038875095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2453485)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453485)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZAZ000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZAZ000000000.  This version of the project
            (01) has the accession number NZ_JAVZAZ010000000, and consists of
            sequences JAVZAZ010000001-JAVZAZ010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 109.69753526230176x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875095.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:55:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,649
            CDSs (total)                      :: 2,599
            Genes (coding)                    :: 2,477
            CDSs (with protein)               :: 2,477
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 67 of 122
            Pseudo Genes (incomplete)         :: 72 of 122
            Pseudo Genes (internal stop)      :: 26 of 122
            Pseudo Genes (multiple problems)  :: 39 of 122
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453485
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-5_201803_bins_9"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-5
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZAZ010000001-JAVZAZ010000025
WGS_SCAFLD  NZ_JAVZAZ010000001-NZ_JAVZAZ010000025
//
LOCUS       NZ_JAVZBB010000000   2701304 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-5_201808_bins_12, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZBB000000000
VERSION     NZ_JAVZBB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037046
            Assembly: GCF_038875075.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2701304)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2701304)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZBB000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZBB000000000.  This version of the project
            (01) has the accession number NZ_JAVZBB010000000, and consists of
            sequences JAVZBB010000001-JAVZBB010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75.42822130415908x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875075.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:58:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,947
            CDSs (total)                      :: 2,896
            Genes (coding)                    :: 2,769
            CDSs (with protein)               :: 2,769
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 72 of 127
            Pseudo Genes (incomplete)         :: 70 of 127
            Pseudo Genes (internal stop)      :: 28 of 127
            Pseudo Genes (multiple problems)  :: 39 of 127
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701304
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-5_201808_bins_12"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-5
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZBB010000001-JAVZBB010000030
WGS_SCAFLD  NZ_JAVZBB010000001-NZ_JAVZBB010000030
//
LOCUS       NZ_JAVZAI010000000   2616738 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-4_201901_bins_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZAI000000000
VERSION     NZ_JAVZAI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037027
            Assembly: GCF_038875495.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2616738)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2616738)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZAI000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZAI000000000.  This version of the project
            (01) has the accession number NZ_JAVZAI010000000, and consists of
            sequences JAVZAI010000001-JAVZAI010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 188.9751818289868x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875495.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:57:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,809
            CDSs (total)                      :: 2,759
            Genes (coding)                    :: 2,631
            CDSs (with protein)               :: 2,631
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 73 of 128
            Pseudo Genes (incomplete)         :: 69 of 128
            Pseudo Genes (internal stop)      :: 28 of 128
            Pseudo Genes (multiple problems)  :: 38 of 128
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2616738
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-4_201901_bins_4"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-4
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZAI010000001-JAVZAI010000016
WGS_SCAFLD  NZ_JAVZAI010000001-NZ_JAVZAI010000016
//
LOCUS       NZ_JAVZAR010000000   2555350 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-4_201912_bins_6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZAR000000000
VERSION     NZ_JAVZAR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037036
            Assembly: GCF_038875275.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2555350)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2555350)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZAR000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZAR000000000.  This version of the project
            (01) has the accession number NZ_JAVZAR010000000, and consists of
            sequences JAVZAR010000001-JAVZAR010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 153.4605736061548x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875275.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:56:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,758
            CDSs (total)                      :: 2,708
            Genes (coding)                    :: 2,581
            CDSs (with protein)               :: 2,581
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 71 of 127
            Pseudo Genes (incomplete)         :: 74 of 127
            Pseudo Genes (internal stop)      :: 25 of 127
            Pseudo Genes (multiple problems)  :: 39 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2555350
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-4_201912_bins_6"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-4
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZAR010000001-JAVZAR010000022
WGS_SCAFLD  NZ_JAVZAR010000001-NZ_JAVZAR010000022
//
LOCUS       NZ_JAVYZV010000000   2516022 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-3_202007_bins_13, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYZV000000000
VERSION     NZ_JAVYZV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037014
            Assembly: GCF_038875755.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2516022)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516022)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYZV000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYZV000000000.  This version of the project
            (01) has the accession number NZ_JAVYZV010000000, and consists of
            sequences JAVYZV010000001-JAVYZV010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 270.97340306355215x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038875755.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:17:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,721
            CDSs (total)                      :: 2,671
            Genes (coding)                    :: 2,554
            CDSs (with protein)               :: 2,554
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 68 of 117
            Pseudo Genes (incomplete)         :: 66 of 117
            Pseudo Genes (internal stop)      :: 23 of 117
            Pseudo Genes (multiple problems)  :: 36 of 117
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516022
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_202007_bins_13"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2020-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYZV010000001-JAVYZV010000018
WGS_SCAFLD  NZ_JAVYZV010000001-NZ_JAVYZV010000018
//
LOCUS       NZ_JAVYYX010000000   2655527 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-3_201901_bins_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYYX000000000
VERSION     NZ_JAVYYX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036990
            Assembly: GCF_038876235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2655527)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2655527)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYYX000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYYX000000000.  This version of the project
            (01) has the accession number NZ_JAVYYX010000000, and consists of
            sequences JAVYYX010000001-JAVYYX010000023.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 622.4406238253314x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038876235.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:19:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,853
            CDSs (total)                      :: 2,803
            Genes (coding)                    :: 2,673
            CDSs (with protein)               :: 2,673
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 72 of 130
            Pseudo Genes (incomplete)         :: 74 of 130
            Pseudo Genes (internal stop)      :: 27 of 130
            Pseudo Genes (multiple problems)  :: 39 of 130
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655527
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201901_bins_4"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYYX010000001-JAVYYX010000023
WGS_SCAFLD  NZ_JAVYYX010000001-NZ_JAVYYX010000023
//
LOCUS       NZ_JAVYYD010000000   2445862 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-3_201808_bins_16, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYYD000000000
VERSION     NZ_JAVYYD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036970
            Assembly: GCF_038876675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2445862)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2445862)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYYD000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYYD000000000.  This version of the project
            (01) has the accession number NZ_JAVYYD010000000, and consists of
            sequences JAVYYD010000001-JAVYYD010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 249.7264218457051x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038876675.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:23:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,631
            CDSs (total)                      :: 2,585
            Genes (coding)                    :: 2,466
            CDSs (with protein)               :: 2,466
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 66 of 119
            Pseudo Genes (incomplete)         :: 67 of 119
            Pseudo Genes (internal stop)      :: 25 of 119
            Pseudo Genes (multiple problems)  :: 35 of 119
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445862
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201808_bins_16"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYYD010000001-JAVYYD010000026
WGS_SCAFLD  NZ_JAVYYD010000001-NZ_JAVYYD010000026
//
LOCUS       NZ_JAVZSF010000000   2380484 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-8_201705_bins_10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZSF000000000
VERSION     NZ_JAVZSF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037492
            Assembly: GCF_038880175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2380484)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380484)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZSF000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZSF000000000.  This version of the project
            (01) has the accession number NZ_JAVZSF010000000, and consists of
            sequences JAVZSF010000001-JAVZSF010000108.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 309.64782189624657x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038880175.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:26:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,738
            CDSs (total)                      :: 2,685
            Genes (coding)                    :: 2,440
            CDSs (with protein)               :: 2,440
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 97 of 245
            Pseudo Genes (incomplete)         :: 169 of 245
            Pseudo Genes (internal stop)      :: 19 of 245
            Pseudo Genes (multiple problems)  :: 37 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380484
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201705_bins_10"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZSF010000001-JAVZSF010000108
WGS_SCAFLD  NZ_JAVZSF010000001-NZ_JAVZSF010000108
//
LOCUS       NZ_JAVZUM010000000   2693147 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-8_201808_bins_18, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZUM000000000
VERSION     NZ_JAVZUM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037551
            Assembly: GCF_038879015.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2693147)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2693147)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZUM000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZUM000000000.  This version of the project
            (01) has the accession number NZ_JAVZUM010000000, and consists of
            sequences JAVZUM010000001-JAVZUM010000237.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 241.32850747064114x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038879015.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:24:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,960
            CDSs (total)                      :: 2,908
            Genes (coding)                    :: 2,694
            CDSs (with protein)               :: 2,694
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 214
            CDSs (without protein)            :: 214
            Pseudo Genes (ambiguous residues) :: 0 of 214
            Pseudo Genes (frameshifted)       :: 63 of 214
            Pseudo Genes (incomplete)         :: 162 of 214
            Pseudo Genes (internal stop)      :: 35 of 214
            Pseudo Genes (multiple problems)  :: 42 of 214
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2693147
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201808_bins_18"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZUM010000001-JAVZUM010000237
WGS_SCAFLD  NZ_JAVZUM010000001-NZ_JAVZUM010000237
//
LOCUS       NZ_JAVZOR010000000   2584860 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-6_202007_bins_22, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZOR000000000
VERSION     NZ_JAVZOR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037400
            Assembly: GCF_038882095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2584860)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584860)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZOR000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZOR000000000.  This version of the project
            (01) has the accession number NZ_JAVZOR010000000, and consists of
            sequences JAVZOR010000001-JAVZOR010000023.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29.81559916542794x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038882095.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:27:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,797
            CDSs (total)                      :: 2,747
            Genes (coding)                    :: 2,617
            CDSs (with protein)               :: 2,617
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 71 of 130
            Pseudo Genes (incomplete)         :: 76 of 130
            Pseudo Genes (internal stop)      :: 28 of 130
            Pseudo Genes (multiple problems)  :: 41 of 130
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584860
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_202007_bins_22"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2020-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZOR010000001-JAVZOR010000023
WGS_SCAFLD  NZ_JAVZOR010000001-NZ_JAVZOR010000023
//
LOCUS       NZ_JAVZWT010000000   2582017 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-9_201901_bins_10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZWT000000000
VERSION     NZ_JAVZWT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038697
            Assembly: GCF_038877835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2582017)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2582017)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZWT000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZWT000000000.  This version of the project
            (01) has the accession number NZ_JAVZWT010000000, and consists of
            sequences JAVZWT010000001-JAVZWT010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.642457904290083x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038877835.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:22:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,787
            CDSs (total)                      :: 2,737
            Genes (coding)                    :: 2,611
            CDSs (with protein)               :: 2,611
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 71 of 126
            Pseudo Genes (incomplete)         :: 73 of 126
            Pseudo Genes (internal stop)      :: 26 of 126
            Pseudo Genes (multiple problems)  :: 40 of 126
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582017
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-9_201901_bins_10"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-9
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZWT010000001-JAVZWT010000024
WGS_SCAFLD  NZ_JAVZWT010000001-NZ_JAVZWT010000024
//
LOCUS       NZ_JAVZRW010000000   2464166 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-7_201912_bins_2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZRW000000000
VERSION     NZ_JAVZRW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037483
            Assembly: GCF_038880375.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2464166)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464166)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZRW000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZRW000000000.  This version of the project
            (01) has the accession number NZ_JAVZRW010000000, and consists of
            sequences JAVZRW010000001-JAVZRW010000028.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 261.3256371585496x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038880375.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:27:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,656
            CDSs (total)                      :: 2,609
            Genes (coding)                    :: 2,489
            CDSs (with protein)               :: 2,489
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 66 of 120
            Pseudo Genes (incomplete)         :: 72 of 120
            Pseudo Genes (internal stop)      :: 22 of 120
            Pseudo Genes (multiple problems)  :: 36 of 120
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464166
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-7_201912_bins_2"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-7
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZRW010000001-JAVZRW010000028
WGS_SCAFLD  NZ_JAVZRW010000001-NZ_JAVZRW010000028
//
LOCUS       NZ_JAVYWV010000000   2682992 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-3_201705_bins_11, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYWV000000000
VERSION     NZ_JAVYWV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036936
            Assembly: GCF_038877335.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2682992)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2682992)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYWV000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYWV000000000.  This version of the project
            (01) has the accession number NZ_JAVYWV010000000, and consists of
            sequences JAVYWV010000001-JAVYWV010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1407.209961673761x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038877335.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:29:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,885
            CDSs (total)                      :: 2,833
            Genes (coding)                    :: 2,702
            CDSs (with protein)               :: 2,702
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 75 of 131
            Pseudo Genes (incomplete)         :: 74 of 131
            Pseudo Genes (internal stop)      :: 28 of 131
            Pseudo Genes (multiple problems)  :: 42 of 131
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2682992
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-3_201705_bins_11"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-3
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYWV010000001-JAVYWV010000041
WGS_SCAFLD  NZ_JAVYWV010000001-NZ_JAVYWV010000041
//
LOCUS       NZ_JAWARK010000000   2573270 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate ZMQL_201912_bins_10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAWARK000000000
VERSION     NZ_JAWARK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038316
            Assembly: GCF_038893475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2573270)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573270)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWARK000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWARK000000000.  This version of the project
            (01) has the accession number NZ_JAWARK010000000, and consists of
            sequences JAWARK010000001-JAWARK010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.803117219179295x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038893475.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:29:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,776
            CDSs (total)                      :: 2,726
            Genes (coding)                    :: 2,590
            CDSs (with protein)               :: 2,590
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 72 of 136
            Pseudo Genes (incomplete)         :: 82 of 136
            Pseudo Genes (internal stop)      :: 28 of 136
            Pseudo Genes (multiple problems)  :: 42 of 136
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573270
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="ZMQL_201912_bins_10"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, ZMQL pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWARK010000001-JAWARK010000026
WGS_SCAFLD  NZ_JAWARK010000001-NZ_JAWARK010000026
//
LOCUS       NZ_JAVZKJ010000000   2761157 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-6_201907_bins_121, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZKJ000000000
VERSION     NZ_JAVZKJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037288
            Assembly: GCF_038884315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2761157)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761157)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZKJ000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZKJ000000000.  This version of the project
            (01) has the accession number NZ_JAVZKJ010000000, and consists of
            sequences JAVZKJ010000001-JAVZKJ010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 282.0988895286414x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038884315.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:29:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,982
            CDSs (total)                      :: 2,930
            Genes (coding)                    :: 2,790
            CDSs (with protein)               :: 2,790
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 74 of 140
            Pseudo Genes (incomplete)         :: 83 of 140
            Pseudo Genes (internal stop)      :: 27 of 140
            Pseudo Genes (multiple problems)  :: 40 of 140
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761157
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201907_bins_121"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZKJ010000001-JAVZKJ010000056
WGS_SCAFLD  NZ_JAVZKJ010000001-NZ_JAVZKJ010000056
//
LOCUS       NZ_JAVZNS010000000   2471234 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Saccharolobus sp. isolate DRTY-6_201912_bins_66, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZNS000000000
VERSION     NZ_JAVZNS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037375
            Assembly: GCF_038882685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2471234)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471234)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZNS000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZNS000000000.  This version of the project
            (01) has the accession number NZ_JAVZNS010000000, and consists of
            sequences JAVZNS010000001-JAVZNS010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 58.258178064900086x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038882685.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:32:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,671
            CDSs (total)                      :: 2,621
            Genes (coding)                    :: 2,501
            CDSs (with protein)               :: 2,501
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 65 of 120
            Pseudo Genes (incomplete)         :: 71 of 120
            Pseudo Genes (internal stop)      :: 26 of 120
            Pseudo Genes (multiple problems)  :: 38 of 120
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471234
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201912_bins_66"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZNS010000001-JAVZNS010000024
WGS_SCAFLD  NZ_JAVZNS010000001-NZ_JAVZNS010000024
//
LOCUS       NZ_JAVYVI010000000   1702957 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-2_201912_bins_23, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYVI000000000
VERSION     NZ_JAVYVI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036897
            Assembly: GCF_038727685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1702957)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702957)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYVI000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYVI000000000.  This version of the project
            (01) has the accession number NZ_JAVYVI010000000, and consists of
            sequences JAVYVI010000001-JAVYVI010000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 131.23408115745292x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038727685.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 05:59:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,915
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,856
            CDSs (with protein)               :: 1,856
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 0 of 10
            Pseudo Genes (incomplete)         :: 10 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702957
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_201912_bins_23"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYVI010000001-JAVYVI010000047
WGS_SCAFLD  NZ_JAVYVI010000001-NZ_JAVYVI010000047
//
LOCUS       NZ_JAVYTI010000000   1606820 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-2_201901_bins_13, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYTI000000000
VERSION     NZ_JAVYTI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036845
            Assembly: GCF_038728765.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1606820)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606820)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYTI000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYTI000000000.  This version of the project
            (01) has the accession number NZ_JAVYTI010000000, and consists of
            sequences JAVYTI010000001-JAVYTI010000076.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 68.79578890566187x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038728765.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:00:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,746
            CDSs (with protein)               :: 1,746
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 39
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 0 of 21
            Pseudo Genes (incomplete)         :: 21 of 21
            Pseudo Genes (internal stop)      :: 0 of 21
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606820
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-2_201901_bins_13"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-2
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYTI010000001-JAVYTI010000076
WGS_SCAFLD  NZ_JAVYTI010000001-NZ_JAVYTI010000076
//
LOCUS       NZ_JAVYNX010000000   1759213 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-1_201705_bins_16, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYNX000000000
VERSION     NZ_JAVYNX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036704
            Assembly: GCF_038735015.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1759213)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759213)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYNX000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYNX000000000.  This version of the project
            (01) has the accession number NZ_JAVYNX010000000, and consists of
            sequences JAVYNX010000001-JAVYNX010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 176.68337358976038x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038735015.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:02:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,949
            CDSs (total)                      :: 1,902
            Genes (coding)                    :: 1,893
            CDSs (with protein)               :: 1,893
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 9 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            CRISPR Arrays                     :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759213
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201705_bins_16"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYNX010000001-JAVYNX010000019
WGS_SCAFLD  NZ_JAVYNX010000001-NZ_JAVYNX010000019
//
LOCUS       NZ_JAVYOR010000000   1814501 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-1_201808_bins_18, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYOR000000000
VERSION     NZ_JAVYOR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036724
            Assembly: GCF_038734055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1814501)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814501)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYOR000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYOR000000000.  This version of the project
            (01) has the accession number NZ_JAVYOR010000000, and consists of
            sequences JAVYOR010000001-JAVYOR010000061.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 167.1125782430058x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038734055.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:00:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,035
            CDSs (total)                      :: 1,986
            Genes (coding)                    :: 1,967
            CDSs (with protein)               :: 1,967
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 0 of 19
            Pseudo Genes (incomplete)         :: 18 of 19
            Pseudo Genes (internal stop)      :: 1 of 19
            CRISPR Arrays                     :: 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814501
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201808_bins_18"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYOR010000001-JAVYOR010000061
WGS_SCAFLD  NZ_JAVYOR010000001-NZ_JAVYOR010000061
//
LOCUS       NZ_JAVZDW010000000   1810798 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-6_201709_bins_44, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZDW000000000
VERSION     NZ_JAVZDW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037119
            Assembly: GCF_038873655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1810798)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810798)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZDW000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZDW000000000.  This version of the project
            (01) has the accession number NZ_JAVZDW010000000, and consists of
            sequences JAVZDW010000001-JAVZDW010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83.12905071368411x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038873655.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:05:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,028
            CDSs (total)                      :: 1,981
            Genes (coding)                    :: 1,959
            CDSs (with protein)               :: 1,959
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 21 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            CRISPR Arrays                     :: 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810798
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201709_bins_44"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-09"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZDW010000001-JAVZDW010000041
WGS_SCAFLD  NZ_JAVZDW010000001-NZ_JAVZDW010000041
//
LOCUS       NZ_JAVZIC010000000   1824952 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-6_201901_bins_24, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZIC000000000
VERSION     NZ_JAVZIC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037229
            Assembly: GCF_038871435.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1824952)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824952)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZIC000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZIC000000000.  This version of the project
            (01) has the accession number NZ_JAVZIC010000000, and consists of
            sequences JAVZIC010000001-JAVZIC010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 261.06458194038254x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038871435.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:12:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,964
            Genes (coding)                    :: 1,952
            CDSs (with protein)               :: 1,952
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 0 of 12
            Pseudo Genes (incomplete)         :: 11 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            CRISPR Arrays                     :: 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824952
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201901_bins_24"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZIC010000001-JAVZIC010000027
WGS_SCAFLD  NZ_JAVZIC010000001-NZ_JAVZIC010000027
//
LOCUS       NZ_JAVZFF010000000   1752897 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-6_201803_bins_43, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZFF000000000
VERSION     NZ_JAVZFF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037154
            Assembly: GCF_038872975.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1752897)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752897)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZFF000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZFF000000000.  This version of the project
            (01) has the accession number NZ_JAVZFF010000000, and consists of
            sequence JAVZFF010000001.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2142.8507056403037x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038872975.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:06:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,930
            CDSs (total)                      :: 1,882
            Genes (coding)                    :: 1,874
            CDSs (with protein)               :: 1,874
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 0 of 8
            Pseudo Genes (incomplete)         :: 7 of 8
            Pseudo Genes (internal stop)      :: 1 of 8
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752897
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201803_bins_43"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZFF010000001
WGS_SCAFLD  NZ_JAVZFF010000001
//
LOCUS       NZ_JAVZHL010000000   1946313 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-6_201808_bins_87, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZHL000000000
VERSION     NZ_JAVZHL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037212
            Assembly: GCF_038871715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1946313)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946313)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZHL000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZHL000000000.  This version of the project
            (01) has the accession number NZ_JAVZHL010000000, and consists of
            sequences JAVZHL010000001-JAVZHL010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.089560788539801x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038871715.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:09:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,167
            CDSs (total)                      :: 2,119
            Genes (coding)                    :: 2,104
            CDSs (with protein)               :: 2,104
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 14 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946313
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201808_bins_87"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZHL010000001-JAVZHL010000033
WGS_SCAFLD  NZ_JAVZHL010000001-NZ_JAVZHL010000033
//
LOCUS       NZ_JAVYQK010000000   2599671 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-1_201901_bins_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYQK000000000
VERSION     NZ_JAVYQK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036769
            Assembly: GCF_038731815.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 2599671)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2599671)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYQK000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYQK000000000.  This version of the project
            (01) has the accession number NZ_JAVYQK010000000, and consists of
            sequences JAVYQK010000001-JAVYQK010000144.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 153.51092440866722x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038731815.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:10:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,834
            CDSs (total)                      :: 2,776
            Genes (coding)                    :: 2,732
            CDSs (with protein)               :: 2,732
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 4 of 44
            Pseudo Genes (incomplete)         :: 41 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 3 of 44
            CRISPR Arrays                     :: 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599671
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201901_bins_4"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYQK010000001-JAVYQK010000144
WGS_SCAFLD  NZ_JAVYQK010000001-NZ_JAVYQK010000144
//
LOCUS       NZ_JAVZRQ010000000   1674453 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-7_201803_bins_93, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZRQ000000000
VERSION     NZ_JAVZRQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037477
            Assembly: GCF_038880475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1674453)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674453)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZRQ000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZRQ000000000.  This version of the project
            (01) has the accession number NZ_JAVZRQ010000000, and consists of
            sequences JAVZRQ010000001-JAVZRQ010000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 156.040064755088x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038880475.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:40:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,901
            CDSs (total)                      :: 1,854
            Genes (coding)                    :: 1,845
            CDSs (with protein)               :: 1,845
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 9 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            CRISPR Arrays                     :: 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674453
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-7_201803_bins_93"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-7
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZRQ010000001-JAVZRQ010000043
WGS_SCAFLD  NZ_JAVZRQ010000001-NZ_JAVZRQ010000043
//
LOCUS       NZ_JAVZSM010000000   1771171 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-8_201705_bins_17, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZSM000000000
VERSION     NZ_JAVZSM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037499
            Assembly: GCF_038880035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1771171)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771171)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZSM000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZSM000000000.  This version of the project
            (01) has the accession number NZ_JAVZSM010000000, and consists of
            sequences JAVZSM010000001-JAVZSM010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.1431043509729x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038880035.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:43:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,988
            CDSs (total)                      :: 1,941
            Genes (coding)                    :: 1,930
            CDSs (with protein)               :: 1,930
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 0 of 11
            Pseudo Genes (incomplete)         :: 11 of 11
            Pseudo Genes (internal stop)      :: 0 of 11
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771171
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201705_bins_17"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZSM010000001-JAVZSM010000049
WGS_SCAFLD  NZ_JAVZSM010000001-NZ_JAVZSM010000049
//
LOCUS       NZ_JAVZMP010000000   1592552 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Thermofilum sp. isolate DRTY-6_201912_bins_17, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZMP000000000
VERSION     NZ_JAVZMP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037346
            Assembly: GCF_038883215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermofilum sp. (hot springs metagenome)
  ORGANISM  Thermofilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Thermofilum.
REFERENCE   1  (bases 1 to 1592552)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592552)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZMP000000000.1.
            The Thermofilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZMP000000000.  This version of the project
            (01) has the accession number NZ_JAVZMP010000000, and consists of
            sequences JAVZMP010000001-JAVZMP010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 152.1399607142401x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038883215.1-RS_2024_11_20
            Annotation Date                   :: 11/20/2024 06:47:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,788
            CDSs (total)                      :: 1,741
            Genes (coding)                    :: 1,723
            CDSs (with protein)               :: 1,723
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 1 of 18
            Pseudo Genes (incomplete)         :: 17 of 18
            Pseudo Genes (internal stop)      :: 0 of 18
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592552
                     /organism="Thermofilum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201912_bins_17"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:1961369"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-12"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZMP010000001-JAVZMP010000029
WGS_SCAFLD  NZ_JAVZMP010000001-NZ_JAVZMP010000029
//
LOCUS       NZ_JBGUHL010000000   2105874 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_351, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUHL000000000
VERSION     NZ_JBGUHL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293649
            Sequence Read Archive: SRR25030118
            Assembly: GCF_045111935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2105874)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUHL000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUHL000000000.  This version of the
            project (01) has the accession number NZ_JBGUHL010000000, and
            consists of sequences JBGUHL010000001-JBGUHL010000101.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045111935.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:21:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,939
            CDSs (total)                      :: 1,906
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 33
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 0 of 28
            Pseudo Genes (incomplete)         :: 28 of 28
            Pseudo Genes (internal stop)      :: 0 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105874
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_351"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUHL010000001-JBGUHL010000101
WGS_SCAFLD  NZ_JBGUHL010000001-NZ_JBGUHL010000101
//
LOCUS       NZ_JBGUIH010000000   1911020 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_331, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUIH000000000
VERSION     NZ_JBGUIH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293627
            Sequence Read Archive: SRR25030124
            Assembly: GCF_045112895.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1911020)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUIH000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUIH000000000.  This version of the
            project (01) has the accession number NZ_JBGUIH010000000, and
            consists of sequences JBGUIH010000001-JBGUIH010000058.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045112895.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:21:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,933
            CDSs (total)                      :: 1,899
            Genes (coding)                    :: 1,881
            CDSs (with protein)               :: 1,881
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 1 of 18
            Pseudo Genes (incomplete)         :: 17 of 18
            Pseudo Genes (internal stop)      :: 0 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911020
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_331"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUIH010000001-JBGUIH010000058
WGS_SCAFLD  NZ_JBGUIH010000001-NZ_JBGUIH010000058
//
LOCUS       NZ_JBGUIW010000000   2314208 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_318, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUIW000000000
VERSION     NZ_JBGUIW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293612
            Sequence Read Archive: SRR25030129
            Assembly: GCF_045113305.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2314208)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUIW000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUIW000000000.  This version of the
            project (01) has the accession number NZ_JBGUIW010000000, and
            consists of sequences JBGUIW010000001-JBGUIW010000189.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045113305.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:21:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,223
            CDSs (total)                      :: 2,190
            Genes (coding)                    :: 2,151
            CDSs (with protein)               :: 2,151
            Genes (RNA)                       :: 33
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 2 of 39
            Pseudo Genes (incomplete)         :: 34 of 39
            Pseudo Genes (internal stop)      :: 4 of 39
            Pseudo Genes (multiple problems)  :: 1 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314208
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_318"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUIW010000001-JBGUIW010000189
WGS_SCAFLD  NZ_JBGUIW010000001-NZ_JBGUIW010000189
//
LOCUS       NZ_JBGULU010000000   2080907 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_25, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGULU000000000
VERSION     NZ_JBGULU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293536
            Sequence Read Archive: SRR25030098
            Assembly: GCF_045116495.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2080907)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGULU000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGULU000000000.  This version of the
            project (01) has the accession number NZ_JBGULU010000000, and
            consists of sequences JBGULU010000001-JBGULU010000206.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045116495.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:22:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,213
            CDSs (total)                      :: 2,154
            Genes (coding)                    :: 2,093
            CDSs (with protein)               :: 2,093
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 0 of 61
            Pseudo Genes (incomplete)         :: 61 of 61
            Pseudo Genes (internal stop)      :: 0 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080907
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_25"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGULU010000001-JBGULU010000206
WGS_SCAFLD  NZ_JBGULU010000001-NZ_JBGULU010000206
//
LOCUS       NZ_JBGVHO010000000   2446778 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate fecal_MAG_341, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGVHO000000000
VERSION     NZ_JBGVHO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43292561
            Sequence Read Archive: SRR25030058
            Assembly: GCF_045122375.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2446778)
  AUTHORS   Conteville,L.C., Da Silva,J.V., Andrade,B.G.N., Coutinho,L.,
            Palhares,J.C.P. and Regitano,L.C.A.
  TITLE     Recovery of metagenome-assembled genomes from the rumen and fecal
            microbiomes of Bos indicus beef cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2446778)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGVHO000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGVHO000000000.  This version of the
            project (01) has the accession number NZ_JBGVHO010000000, and
            consists of sequences JBGVHO010000001-JBGVHO010000118.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045122375.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:26:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,361
            CDSs (total)                      :: 2,322
            Genes (coding)                    :: 2,299
            CDSs (with protein)               :: 2,299
            Genes (RNA)                       :: 39
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 2 of 23
            Pseudo Genes (incomplete)         :: 20 of 23
            Pseudo Genes (internal stop)      :: 3 of 23
            Pseudo Genes (multiple problems)  :: 2 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446778
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="fecal_MAG_341"
                     /isolation_source="Fecal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGVHO010000001-JBGVHO010000118
WGS_SCAFLD  NZ_JBGVHO010000001-NZ_JBGVHO010000118
//
LOCUS       NZ_JBGUKP010000000   2845293 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_278, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUKP000000000
VERSION     NZ_JBGUKP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293567
            Sequence Read Archive: SRR25030082
            Assembly: GCF_045114535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2845293)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUKP000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUKP000000000.  This version of the
            project (01) has the accession number NZ_JBGUKP010000000, and
            consists of sequences JBGUKP010000001-JBGUKP010000128.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045114535.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:24:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,862
            CDSs (total)                      :: 2,798
            Genes (coding)                    :: 2,770
            CDSs (with protein)               :: 2,770
            Genes (RNA)                       :: 64
            tRNAs                             :: 61
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 3 of 28
            Pseudo Genes (incomplete)         :: 26 of 28
            Pseudo Genes (internal stop)      :: 1 of 28
            Pseudo Genes (multiple problems)  :: 2 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845293
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_278"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUKP010000001-JBGUKP010000128
WGS_SCAFLD  NZ_JBGUKP010000001-NZ_JBGUKP010000128
//
LOCUS       NZ_JBGVDF010000000   2002890 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate fecal_MAG_443, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGVDF000000000
VERSION     NZ_JBGVDF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43292674
            Sequence Read Archive: SRR25030046
            Assembly: GCF_045119235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2002890)
  AUTHORS   Conteville,L.C., Da Silva,J.V., Andrade,B.G.N., Coutinho,L.,
            Palhares,J.C.P. and Regitano,L.C.A.
  TITLE     Recovery of metagenome-assembled genomes from the rumen and fecal
            microbiomes of Bos indicus beef cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2002890)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGVDF000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGVDF000000000.  This version of the
            project (01) has the accession number NZ_JBGVDF010000000, and
            consists of sequences JBGVDF010000001-JBGVDF010000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045119235.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:23:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,925
            CDSs (total)                      :: 1,887
            Genes (coding)                    :: 1,859
            CDSs (with protein)               :: 1,859
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 2 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 2 of 28
            Pseudo Genes (incomplete)         :: 25 of 28
            Pseudo Genes (internal stop)      :: 2 of 28
            Pseudo Genes (multiple problems)  :: 1 of 28
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002890
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="fecal_MAG_443"
                     /isolation_source="Fecal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGVDF010000001-JBGVDF010000065
WGS_SCAFLD  NZ_JBGVDF010000001-NZ_JBGVDF010000065
//
LOCUS       NZ_JBGUOA010000000   2540933 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_198, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUOA000000000
VERSION     NZ_JBGUOA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293478
            Sequence Read Archive: SRR25030081
            Assembly: GCF_045117655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2540933)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUOA000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUOA000000000.  This version of the
            project (01) has the accession number NZ_JBGUOA010000000, and
            consists of sequences JBGUOA010000001-JBGUOA010000130.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045117655.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:23:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,431
            CDSs (total)                      :: 2,375
            Genes (coding)                    :: 2,337
            CDSs (with protein)               :: 2,337
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 52
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 2 of 38
            Pseudo Genes (incomplete)         :: 36 of 38
            Pseudo Genes (internal stop)      :: 1 of 38
            Pseudo Genes (multiple problems)  :: 1 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540933
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_198"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUOA010000001-JBGUOA010000130
WGS_SCAFLD  NZ_JBGUOA010000001-NZ_JBGUOA010000130
//
LOCUS       NZ_JBGVFE010000000   2056974 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate fecal_MAG_398, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGVFE000000000
VERSION     NZ_JBGVFE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43292623
            Sequence Read Archive: SRR25030052
            Assembly: GCF_045120835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2056974)
  AUTHORS   Conteville,L.C., Da Silva,J.V., Andrade,B.G.N., Coutinho,L.,
            Palhares,J.C.P. and Regitano,L.C.A.
  TITLE     Recovery of metagenome-assembled genomes from the rumen and fecal
            microbiomes of Bos indicus beef cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2056974)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGVFE000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGVFE000000000.  This version of the
            project (01) has the accession number NZ_JBGVFE010000000, and
            consists of sequences JBGVFE010000001-JBGVFE010000115.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045120835.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:24:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,061
            CDSs (total)                      :: 2,022
            Genes (coding)                    :: 1,982
            CDSs (with protein)               :: 1,982
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 0 of 40
            Pseudo Genes (incomplete)         :: 38 of 40
            Pseudo Genes (internal stop)      :: 2 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056974
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="fecal_MAG_398"
                     /isolation_source="Fecal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGVFE010000001-JBGVFE010000115
WGS_SCAFLD  NZ_JBGVFE010000001-NZ_JBGVFE010000115
//
LOCUS       NZ_JBGUQH010000000   2273696 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_144, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUQH000000000
VERSION     NZ_JBGUQH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293419
            Sequence Read Archive: SRR25030086
            Assembly: GCF_045130775.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2273696)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUQH000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUQH000000000.  This version of the
            project (01) has the accession number NZ_JBGUQH010000000, and
            consists of sequences JBGUQH010000001-JBGUQH010000305.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045130775.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:29:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,266
            CDSs (total)                      :: 2,234
            Genes (coding)                    :: 2,158
            CDSs (with protein)               :: 2,158
            Genes (RNA)                       :: 32
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 1 of 76
            Pseudo Genes (incomplete)         :: 72 of 76
            Pseudo Genes (internal stop)      :: 3 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273696
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_144"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUQH010000001-JBGUQH010000305
WGS_SCAFLD  NZ_JBGUQH010000001-NZ_JBGUQH010000305
//
LOCUS       NZ_JBGVOG010000000   1805144 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate fecal_MAG_216, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGVOG000000000
VERSION     NZ_JBGVOG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43292422
            Sequence Read Archive: SRR25030073
            Assembly: GCF_045126245.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1805144)
  AUTHORS   Conteville,L.C., Da Silva,J.V., Andrade,B.G.N., Coutinho,L.,
            Palhares,J.C.P. and Regitano,L.C.A.
  TITLE     Recovery of metagenome-assembled genomes from the rumen and fecal
            microbiomes of Bos indicus beef cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1805144)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGVOG000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGVOG000000000.  This version of the
            project (01) has the accession number NZ_JBGVOG010000000, and
            consists of sequences JBGVOG010000001-JBGVOG010000134.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045126245.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:27:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,924
            CDSs (total)                      :: 1,885
            Genes (coding)                    :: 1,852
            CDSs (with protein)               :: 1,852
            Genes (RNA)                       :: 39
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 1 of 33
            Pseudo Genes (incomplete)         :: 30 of 33
            Pseudo Genes (internal stop)      :: 3 of 33
            Pseudo Genes (multiple problems)  :: 1 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805144
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="fecal_MAG_216"
                     /isolation_source="Fecal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGVOG010000001-JBGVOG010000134
WGS_SCAFLD  NZ_JBGVOG010000001-NZ_JBGVOG010000134
//
LOCUS       NZ_JBGUPC010000000   2348181 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_172, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUPC000000000
VERSION     NZ_JBGUPC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293450
            Sequence Read Archive: SRR25030084
            Assembly: GCF_045130115.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2348181)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUPC000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUPC000000000.  This version of the
            project (01) has the accession number NZ_JBGUPC010000000, and
            consists of sequences JBGUPC010000001-JBGUPC010000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 23x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045130115.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:29:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,299
            CDSs (total)                      :: 2,253
            Genes (coding)                    :: 2,232
            CDSs (with protein)               :: 2,232
            Genes (RNA)                       :: 46
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 2 of 21
            Pseudo Genes (incomplete)         :: 18 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 1 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348181
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_172"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUPC010000001-JBGUPC010000065
WGS_SCAFLD  NZ_JBGUPC010000001-NZ_JBGUPC010000065
//
LOCUS       NZ_JBGVKS010000000   2160133 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate fecal_MAG_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGVKS000000000
VERSION     NZ_JBGVKS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43292514
            Sequence Read Archive: SRR25030043
            Assembly: GCF_045123805.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2160133)
  AUTHORS   Conteville,L.C., Da Silva,J.V., Andrade,B.G.N., Coutinho,L.,
            Palhares,J.C.P. and Regitano,L.C.A.
  TITLE     Recovery of metagenome-assembled genomes from the rumen and fecal
            microbiomes of Bos indicus beef cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2160133)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGVKS000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGVKS000000000.  This version of the
            project (01) has the accession number NZ_JBGVKS010000000, and
            consists of sequences JBGVKS010000001-JBGVKS010000277.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045123805.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:27:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,239
            CDSs (total)                      :: 2,202
            Genes (coding)                    :: 2,126
            CDSs (with protein)               :: 2,126
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 2 of 76
            Pseudo Genes (incomplete)         :: 72 of 76
            Pseudo Genes (internal stop)      :: 3 of 76
            Pseudo Genes (multiple problems)  :: 1 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160133
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="fecal_MAG_3"
                     /isolation_source="Fecal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGVKS010000001-JBGVKS010000277
WGS_SCAFLD  NZ_JBGVKS010000001-NZ_JBGVKS010000277
//
LOCUS       NZ_JBGVQT010000000   2724726 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate fecal_MAG_158, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGVQT000000000
VERSION     NZ_JBGVQT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43292357
            Sequence Read Archive: SRR25030125
            Assembly: GCF_045127755.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2724726)
  AUTHORS   Conteville,L.C., Da Silva,J.V., Andrade,B.G.N., Coutinho,L.,
            Palhares,J.C.P. and Regitano,L.C.A.
  TITLE     Recovery of metagenome-assembled genomes from the rumen and fecal
            microbiomes of Bos indicus beef cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2724726)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGVQT000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGVQT000000000.  This version of the
            project (01) has the accession number NZ_JBGVQT010000000, and
            consists of sequences JBGVQT010000001-JBGVQT010000116.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045127755.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:34:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,486
            CDSs (total)                      :: 2,446
            Genes (coding)                    :: 2,422
            CDSs (with protein)               :: 2,422
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 2 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 6 of 24
            Pseudo Genes (incomplete)         :: 20 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2724726
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="fecal_MAG_158"
                     /isolation_source="Fecal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGVQT010000001-JBGVQT010000116
WGS_SCAFLD  NZ_JBGVQT010000001-NZ_JBGVQT010000116
//
LOCUS       NZ_JBJGWZ010000000   3662869 bp    DNA     linear   BCT 25-NOV-2024
DEFINITION  Haloferax volcanii strain VS-21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBJGWZ000000000
VERSION     NZ_JBJGWZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44033658
            Assembly: GCF_045111245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3662869)
  AUTHORS   Sorokin,D.Y., Merkel,A.Y., Messina,E., Marturano,L. and Yakimov,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2024) Marine Molecular Microbiology & Biotech,
            C.N.R. - Institute for Biological Resources and Marine
            Biotechnology (IRBIM), Spianata S. Raineri, 86, Messina 98122,
            Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJGWZ000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JBJGWZ000000000.  This version of the project
            (01) has the accession number NZ_JBJGWZ010000000, and consists of
            sequences JBJGWZ010000001-JBJGWZ010000017.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 05-DEC-2023
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045111245.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 01:20:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,721
            CDSs (total)                      :: 3,665
            Genes (coding)                    :: 3,637
            CDSs (with protein)               :: 3,637
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 12 of 28
            Pseudo Genes (incomplete)         :: 15 of 28
            Pseudo Genes (internal stop)      :: 3 of 28
            Pseudo Genes (multiple problems)  :: 2 of 28
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3662869
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="VS-21"
                     /isolation_source="ENVO:01001050"
                     /db_xref="taxon:2246"
                     /geo_loc_name="Viet Nam: Hon Khoi Salt Fields"
                     /lat_lon="12.53 N 109.20 E"
                     /collection_date="2022-06-06"
WGS         JBJGWZ010000001-JBJGWZ010000017
WGS_SCAFLD  NZ_JBJGWZ010000001-NZ_JBJGWZ010000017
//
LOCUS       NZ_JBGUML010000000   2099307 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_234, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUML000000000
VERSION     NZ_JBGUML000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293519
            Sequence Read Archive: SRR25030130
            Assembly: GCF_045116835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2099307)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUML000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUML000000000.  This version of the
            project (01) has the accession number NZ_JBGUML010000000, and
            consists of sequences JBGUML010000001-JBGUML010000189.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045116835.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:22:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,166
            CDSs (total)                      :: 2,133
            Genes (coding)                    :: 2,085
            CDSs (with protein)               :: 2,085
            Genes (RNA)                       :: 33
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 0 of 48
            Pseudo Genes (incomplete)         :: 47 of 48
            Pseudo Genes (internal stop)      :: 1 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099307
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_234"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUML010000001-JBGUML010000189
WGS_SCAFLD  NZ_JBGUML010000001-NZ_JBGUML010000189
//
LOCUS       NZ_JBGUNC010000000   1725366 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter thaueri isolate ruminal_MAG_219, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBGUNC000000000
VERSION     NZ_JBGUNC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293502
            Sequence Read Archive: SRR25030131
            Assembly: GCF_045117155.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter thaueri (gut metagenome)
  ORGANISM  Methanobrevibacter thaueri
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1725366)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUNC000000000.1.
            The Methanobrevibacter thaueri whole genome shotgun (WGS) project
            has the project accession NZ_JBGUNC000000000.  This version of the
            project (01) has the accession number NZ_JBGUNC010000000, and
            consists of sequences JBGUNC010000001-JBGUNC010000081.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045117155.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:22:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,790
            CDSs (total)                      :: 1,760
            Genes (coding)                    :: 1,734
            CDSs (with protein)               :: 1,734
            Genes (RNA)                       :: 30
            rRNAs                             :: 2 (16S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 26
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 0 of 26
            Pseudo Genes (incomplete)         :: 24 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725366
                     /organism="Methanobrevibacter thaueri"
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_219"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:190975"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUNC010000001-JBGUNC010000081
WGS_SCAFLD  NZ_JBGUNC010000001-NZ_JBGUNC010000081
//
LOCUS       NZ_JBGUKT010000000   1867344 bp    DNA     linear   ENV 25-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_274, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUKT000000000
VERSION     NZ_JBGUKT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293563
            Sequence Read Archive: SRR25030082
            Assembly: GCF_045114555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1867344)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUKT000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUKT000000000.  This version of the
            project (01) has the accession number NZ_JBGUKT010000000, and
            consists of sequences JBGUKT010000001-JBGUKT010000038.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045114555.1-RS_2024_11_22
            Annotation Date                   :: 11/22/2024 02:21:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,782
            CDSs (total)                      :: 1,745
            Genes (coding)                    :: 1,738
            CDSs (with protein)               :: 1,738
            Genes (RNA)                       :: 37
            tRNAs                             :: 36
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 7 of 7
            Pseudo Genes (internal stop)      :: 0 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867344
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_274"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUKT010000001-JBGUKT010000038
WGS_SCAFLD  NZ_JBGUKT010000001-NZ_JBGUKT010000038
//
LOCUS       NZ_JBGUZA010000000   2188560 bp    DNA     linear   ENV 26-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_465, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUZA000000000
VERSION     NZ_JBGUZA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293777
            Sequence Read Archive: SRR25030101
            Assembly: GCF_045222475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2188560)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUZA000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUZA000000000.  This version of the
            project (01) has the accession number NZ_JBGUZA010000000, and
            consists of sequences JBGUZA010000001-JBGUZA010000083.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045222475.1-RS_2024_11_24
            Annotation Date                   :: 11/24/2024 10:51:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,157
            CDSs (total)                      :: 2,127
            Genes (coding)                    :: 2,100
            CDSs (with protein)               :: 2,100
            Genes (RNA)                       :: 30
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 28
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 1 of 27
            Pseudo Genes (incomplete)         :: 22 of 27
            Pseudo Genes (internal stop)      :: 4 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188560
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_465"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUZA010000001-JBGUZA010000083
WGS_SCAFLD  NZ_JBGUZA010000001-NZ_JBGUZA010000083
//
LOCUS       NZ_JBGUWC010000000   2386981 bp    DNA     linear   ENV 26-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_86, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUWC000000000
VERSION     NZ_JBGUWC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293853
            Sequence Read Archive: SRR25030092
            Assembly: GCF_045220775.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2386981)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUWC000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUWC000000000.  This version of the
            project (01) has the accession number NZ_JBGUWC010000000, and
            consists of sequences JBGUWC010000001-JBGUWC010000181.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045220775.1-RS_2024_11_24
            Annotation Date                   :: 11/24/2024 10:51:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,468
            CDSs (total)                      :: 2,436
            Genes (coding)                    :: 2,395
            CDSs (with protein)               :: 2,395
            Genes (RNA)                       :: 32
            rRNAs                             :: 2 (16S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 28
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 3 of 41
            Pseudo Genes (incomplete)         :: 38 of 41
            Pseudo Genes (internal stop)      :: 0 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386981
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_86"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUWC010000001-JBGUWC010000181
WGS_SCAFLD  NZ_JBGUWC010000001-NZ_JBGUWC010000181
//
LOCUS       NZ_JBGUXG010000000   1955873 bp    DNA     linear   ENV 26-NOV-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_59, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUXG000000000
VERSION     NZ_JBGUXG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293823
            Sequence Read Archive: SRR25030095
            Assembly: GCF_045221955.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1955873)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUXG000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUXG000000000.  This version of the
            project (01) has the accession number NZ_JBGUXG010000000, and
            consists of sequences JBGUXG010000001-JBGUXG010000117.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045221955.1-RS_2024_11_24
            Annotation Date                   :: 11/24/2024 10:50:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,015
            CDSs (total)                      :: 1,981
            Genes (coding)                    :: 1,940
            CDSs (with protein)               :: 1,940
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 2 of 41
            Pseudo Genes (incomplete)         :: 38 of 41
            Pseudo Genes (internal stop)      :: 2 of 41
            Pseudo Genes (multiple problems)  :: 1 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955873
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_59"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUXG010000001-JBGUXG010000117
WGS_SCAFLD  NZ_JBGUXG010000001-NZ_JBGUXG010000117
//
LOCUS       NZ_JAMQOM010000000   4145596 bp    DNA     linear   BCT 26-NOV-2024
DEFINITION  Haloarcula terrestris strain S1AR25-5A, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMQOM000000000
VERSION     NZ_JAMQOM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28864570
            Assembly: GCF_031624315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula terrestris
  ORGANISM  Haloarcula terrestris
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4145596)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Haloarcula sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4145596)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOM000000000.1.
            The Haloarcula terrestris whole genome shotgun (WGS) project has
            the project accession NZ_JAMQOM000000000.  This version of the
            project (01) has the accession number NZ_JAMQOM010000000, and
            consists of sequences JAMQOM010000001-JAMQOM010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 538.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031624315.1-RS_2024_11_26
            Annotation Date                   :: 11/26/2024 04:01:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,296
            CDSs (total)                      :: 4,225
            Genes (coding)                    :: 4,137
            CDSs (with protein)               :: 4,137
            Genes (RNA)                       :: 71
            rRNAs                             :: 3, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 30 of 88
            Pseudo Genes (incomplete)         :: 73 of 88
            Pseudo Genes (internal stop)      :: 17 of 88
            Pseudo Genes (multiple problems)  :: 25 of 88
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4145596
                     /organism="Haloarcula terrestris"
                     /mol_type="genomic DNA"
                     /strain="S1AR25-5A"
                     /isolation_source="saline soil"
                     /type_material="type strain of Haloarcula terrestris"
                     /db_xref="taxon:2950533"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQOM010000001-JAMQOM010000041
WGS_SCAFLD  NZ_JAMQOM010000001-NZ_JAMQOM010000041
//
LOCUS       NZ_JAMQCP010000000   4034304 bp    DNA     linear   BCT 26-NOV-2024
DEFINITION  Haloarcula argentinensis strain JCM 15760, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMQCP000000000
VERSION     NZ_JAMQCP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28856363
            Assembly: GCF_031624295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula argentinensis
  ORGANISM  Haloarcula argentinensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4034304)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Haloarcula sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4034304)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQCP000000000.1.
            The Haloarcula argentinensis whole genome shotgun (WGS) project has
            the project accession NZ_JAMQCP000000000.  This version of the
            project (01) has the accession number NZ_JAMQCP010000000, and
            consists of sequences JAMQCP010000001-JAMQCP010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 264.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031624295.1-RS_2024_11_26
            Annotation Date                   :: 11/26/2024 03:59:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,138
            CDSs (total)                      :: 4,057
            Genes (coding)                    :: 4,004
            CDSs (with protein)               :: 4,004
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 19 of 53
            Pseudo Genes (incomplete)         :: 37 of 53
            Pseudo Genes (internal stop)      :: 14 of 53
            Pseudo Genes (multiple problems)  :: 14 of 53
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4034304
                     /organism="Haloarcula argentinensis"
                     /mol_type="genomic DNA"
                     /strain="JCM 15760"
                     /culture_collection="JCM:15760"
                     /type_material="type strain of Haloarcula tradensis"
                     /db_xref="taxon:43776"
                     /geo_loc_name="Japan"
                     /collection_date="2021-06-01"
WGS         JAMQCP010000001-JAMQCP010000012
WGS_SCAFLD  NZ_JAMQCP010000001-NZ_JAMQCP010000012
//
LOCUS       NZ_JAUJFM010000000   4033804 bp    DNA     linear   BCT 26-NOV-2024
DEFINITION  Haloarcula argentinensis strain JCM 15760, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAUJFM000000000
VERSION     NZ_JAUJFM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36318582
            Assembly: GCF_032905985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula argentinensis
  ORGANISM  Haloarcula argentinensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4033804)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2023) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUJFM000000000.1.
            The Haloarcula argentinensis whole genome shotgun (WGS) project has
            the project accession NZ_JAUJFM000000000.  This version of the
            project (01) has the accession number NZ_JAUJFM010000000, and
            consists of sequences JAUJFM010000001-JAUJFM010000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 230.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032905985.1-RS_2024_11_26
            Annotation Date                   :: 11/26/2024 04:05:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,143
            CDSs (total)                      :: 4,061
            Genes (coding)                    :: 4,005
            CDSs (with protein)               :: 4,005
            Genes (RNA)                       :: 82
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 5, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 19 of 56
            Pseudo Genes (incomplete)         :: 40 of 56
            Pseudo Genes (internal stop)      :: 14 of 56
            Pseudo Genes (multiple problems)  :: 14 of 56
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4033804
                     /organism="Haloarcula argentinensis"
                     /mol_type="genomic DNA"
                     /strain="JCM 15760"
                     /isolation_source="sediment"
                     /culture_collection="JCM:15760"
                     /type_material="type strain of Haloarcula tradensis"
                     /db_xref="taxon:43776"
                     /geo_loc_name="Thailand"
                     /collection_date="2011-02"
WGS         JAUJFM010000001-JAUJFM010000012
WGS_SCAFLD  NZ_JAUJFM010000001-NZ_JAUJFM010000012
//
LOCUS       NZ_LTBL01000000      2289878 bp    DNA     linear   BCT 26-NOV-2024
DEFINITION  Methanovulcanius yangii strain CYW5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LTBL00000000
VERSION     NZ_LTBL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04515787
            Assembly: GCF_018687785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanovulcanius yangii
  ORGANISM  Methanovulcanius yangii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanovulcanius.
REFERENCE   1  (bases 1 to 2289878)
  AUTHORS   Chien,H.-H. and Lai,M.-C.
  TITLE     Isolation and Characterization of Family Methanomicrobiaceae
            Species from Potential Methane Hydrate area Offshore SW Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2289878)
  AUTHORS   Chien,H.-H., Chen,S.-C. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2016) Department of Life Sciences, National Chung
            Hsing University, 250 Kuo Kuang Road, Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LTBL00000000.1.
            The Methanovulcanius yangii whole genome shotgun (WGS) project has
            the project accession NZ_LTBL00000000.  This version of the project
            (01) has the accession number NZ_LTBL01000000, and consists of
            sequences LTBL01000001-LTBL01000002.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 271.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018687785.1-RS_2024_11_26
            Annotation Date                   :: 11/26/2024 02:40:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,277
            CDSs (total)                      :: 2,221
            Genes (coding)                    :: 2,208
            CDSs (with protein)               :: 2,208
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 5 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            Pseudo Genes (multiple problems)  :: 2 of 13
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289878
                     /organism="Methanovulcanius yangii"
                     /mol_type="genomic DNA"
                     /strain="CYW5"
                     /isolation_source="sediment of submarine mud volcano"
                     /type_material="type strain of Methanovulcanius yangii"
                     /db_xref="taxon:1789227"
                     /geo_loc_name="Taiwan: offshore of southwestern Taiwan in
                     South China Sea"
                     /lat_lon="22.137333 N 120.31333333 E"
                     /collection_date="2010-07"
WGS         LTBL01000001-LTBL01000002
WGS_SCAFLD  NZ_LTBL01000001-NZ_LTBL01000002
//
LOCUS       NZ_JARDAC010000000   3711441 bp    DNA     linear   BCT 30-NOV-2024
DEFINITION  Haloarcula laminariae strain FL173, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JARDAC000000000
VERSION     NZ_JARDAC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33428546
            Assembly: GCF_029530365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula laminariae
  ORGANISM  Haloarcula laminariae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3711441)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a salted mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3711441)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2023) College of Life Sciences, Anhui Normal
            University, Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARDAC000000000.1.
            The Haloarcula laminariae whole genome shotgun (WGS) project has
            the project accession NZ_JARDAC000000000.  This version of the
            project (01) has the accession number NZ_JARDAC010000000, and
            consists of sequences JARDAC010000001-JARDAC010000076.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029530365.1-RS_2024_11_30
            Annotation Date                   :: 11/30/2024 02:57:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,887
            CDSs (total)                      :: 3,816
            Genes (coding)                    :: 3,744
            CDSs (with protein)               :: 3,744
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 15 of 72
            Pseudo Genes (incomplete)         :: 63 of 72
            Pseudo Genes (internal stop)      :: 10 of 72
            Pseudo Genes (multiple problems)  :: 14 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3711441
                     /organism="Haloarcula laminariae"
                     /mol_type="genomic DNA"
                     /strain="FL173"
                     /isolation_source="salt mine"
                     /type_material="type strain of Halomicroarcula salaria"
                     /db_xref="taxon:2961577"
                     /geo_loc_name="China: Anhui"
                     /collection_date="2018-08-10"
                     /collected_by="Shaoxing Chen"
WGS         JARDAC010000001-JARDAC010000076
WGS_SCAFLD  NZ_JARDAC010000001-NZ_JARDAC010000076
//
LOCUS       NZ_AOHS01000000      4416299 bp    DNA     linear   BCT 01-DEC-2024
DEFINITION  Natrialba magadii ATCC 43099 strain MS-3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AOHS00000000
VERSION     NZ_AOHS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471679
            Assembly: GCF_000337875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba magadii ATCC 43099
  ORGANISM  Natrialba magadii ATCC 43099
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4416299)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4416299)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOHS00000000.1.
            The Natrialba magadii ATCC 43099 whole genome shotgun (WGS) project
            has the project accession NZ_AOHS00000000.  This version of the
            project (01) has the accession number NZ_AOHS01000000, and consists
            of sequences AOHS01000001-AOHS01000066.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIx and HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337875.1-RS_2024_12_01
            Annotation Date                   :: 12/01/2024 19:47:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,278
            CDSs (total)                      :: 4,223
            Genes (coding)                    :: 4,109
            CDSs (with protein)               :: 4,109
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 41 of 114
            Pseudo Genes (incomplete)         :: 81 of 114
            Pseudo Genes (internal stop)      :: 21 of 114
            Pseudo Genes (multiple problems)  :: 23 of 114
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4416299
                     /organism="Natrialba magadii ATCC 43099"
                     /mol_type="genomic DNA"
                     /strain="MS-3"
                     /culture_collection="ATCC:43099"
                     /type_material="type strain of Natronobacterium magadii"
                     /db_xref="taxon:547559"
WGS         AOHS01000001-AOHS01000066
WGS_SCAFLD  NZ_AOHS01000001-NZ_AOHS01000066
//
LOCUS       NZ_AOMA01000000      3688747 bp    DNA     linear   BCT 01-DEC-2024
DEFINITION  Halobiforma nitratireducens JCM 10879, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AOMA00000000
VERSION     NZ_AOMA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471660
            Assembly: GCF_000337895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobiforma nitratireducens JCM 10879
  ORGANISM  Halobiforma nitratireducens JCM 10879
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halobiforma.
REFERENCE   1  (bases 1 to 3688747)
  AUTHORS   Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M.,
            Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and
            Facciotti,M.T.
  TITLE     Phylogenetically driven sequencing of extremely halophilic archaea
            reveals strategies for static and dynamic osmo-response
  JOURNAL   PLoS Genet 10 (11), e1004784 (2014)
   PUBMED   25393412
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3688747)
  AUTHORS   Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D.,
            Darling,A., Eisen,J.A. and Facciotti,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2012) Biomedical Engineering; Microbiology;
            Genome Center; Medical Microbiology and Immunology; Evolution and
            Ecology, University of California, Davis, 1 Shields Ave, Davis, CA
            95616, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOMA00000000.1.
            The Halobiforma nitratireducens JCM 10879 whole genome shotgun
            (WGS) project has the project accession NZ_AOMA00000000.  This
            version of the project (01) has the accession number
            NZ_AOMA01000000, and consists of sequences
            AOMA01000001-AOMA01000205.
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 v. Nov-2011
            Genome Coverage       :: 200x
            Sequencing Technology :: Illumina GAIIX; HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000337895.1-RS_2024_12_01
            Annotation Date                   :: 12/01/2024 19:41:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,650
            CDSs (total)                      :: 3,599
            Genes (coding)                    :: 3,430
            CDSs (with protein)               :: 3,430
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 169
            CDSs (without protein)            :: 169
            Pseudo Genes (ambiguous residues) :: 0 of 169
            Pseudo Genes (frameshifted)       :: 59 of 169
            Pseudo Genes (incomplete)         :: 125 of 169
            Pseudo Genes (internal stop)      :: 17 of 169
            Pseudo Genes (multiple problems)  :: 28 of 169
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688747
                     /organism="Halobiforma nitratireducens JCM 10879"
                     /mol_type="genomic DNA"
                     /strain="JCM 10879"
                     /culture_collection="JCM:10879"
                     /type_material="type strain of Natronobacterium
                     nitratireducens"
                     /db_xref="taxon:1227454"
WGS         AOMA01000001-AOMA01000205
WGS_SCAFLD  NZ_AOMA01000001-NZ_AOMA01000205
//
LOCUS       NZ_JAYMGA010000000   3585760 bp    DNA     linear   BCT 02-DEC-2024
DEFINITION  Haloarcula sediminis strain CK38, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAYMGA000000000
VERSION     NZ_JAYMGA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39226923
            Assembly: GCF_035656455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sediminis
  ORGANISM  Haloarcula sediminis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3585760)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3585760)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYMGA000000000.1.
            The Haloarcula sediminis whole genome shotgun (WGS) project has the
            project accession NZ_JAYMGA000000000.  This version of the project
            (01) has the accession number NZ_JAYMGA010000000, and consists of
            sequences JAYMGA010000001-JAYMGA010000032.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 220.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035656455.1-RS_2024_12_02
            Annotation Date                   :: 12/02/2024 01:19:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,694
            CDSs (total)                      :: 3,634
            Genes (coding)                    :: 3,581
            CDSs (with protein)               :: 3,581
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 6, 4 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 23 of 53
            Pseudo Genes (incomplete)         :: 37 of 53
            Pseudo Genes (internal stop)      :: 7 of 53
            Pseudo Genes (multiple problems)  :: 13 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3585760
                     /organism="Haloarcula sediminis"
                     /mol_type="genomic DNA"
                     /strain="CK38"
                     /isolation_source="inland salt lake sediment"
                     /type_material="type strain of Haloarcula sediminis"
                     /db_xref="taxon:3111777"
                     /geo_loc_name="China: Qinghai"
                     /collection_date="2020-07"
WGS         JAYMGA010000001-JAYMGA010000032
WGS_SCAFLD  NZ_JAYMGA010000001-NZ_JAYMGA010000032
//
LOCUS       NZ_JAYMGZ010000000   3753822 bp    DNA     linear   BCT 02-DEC-2024
DEFINITION  Haloarcula brevis strain DT43, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAYMGZ000000000
VERSION     NZ_JAYMGZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39222309
            Assembly: GCF_037078405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula brevis
  ORGANISM  Haloarcula brevis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3753822)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3753822)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYMGZ000000000.1.
            The Haloarcula brevis whole genome shotgun (WGS) project has the
            project accession NZ_JAYMGZ000000000.  This version of the project
            (01) has the accession number NZ_JAYMGZ010000000, and consists of
            sequences JAYMGZ010000001-JAYMGZ010000019.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 380.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037078405.1-RS_2024_12_02
            Annotation Date                   :: 12/02/2024 01:28:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,859
            CDSs (total)                      :: 3,799
            Genes (coding)                    :: 3,745
            CDSs (with protein)               :: 3,745
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 6, 4 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 23 of 54
            Pseudo Genes (incomplete)         :: 40 of 54
            Pseudo Genes (internal stop)      :: 6 of 54
            Pseudo Genes (multiple problems)  :: 11 of 54
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3753822
                     /organism="Haloarcula brevis"
                     /mol_type="genomic DNA"
                     /strain="DT43"
                     /isolation_source="coastal saline alkali soil"
                     /type_material="type strain of Haloarcula brevis"
                     /db_xref="taxon:3111453"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2018-10"
WGS         JAYMGZ010000001-JAYMGZ010000019
WGS_SCAFLD  NZ_JAYMGZ010000001-NZ_JAYMGZ010000019
//
LOCUS       NZ_JAZQIJ010000000   2591666 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900044625_TS20190091.MAGScoT_cleanbin_000015, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZQIJ000000000
VERSION     NZ_JAZQIJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37891086
            Assembly: GCF_045541095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2591666)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2591666)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZQIJ000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZQIJ000000000.  This version of the
            project (01) has the accession number NZ_JAZQIJ010000000, and
            consists of sequences JAZQIJ010000001-JAZQIJ010000280.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045541095.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:07:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,432
            CDSs (total)                      :: 2,393
            Genes (coding)                    :: 2,358
            CDSs (with protein)               :: 2,358
            Genes (RNA)                       :: 39
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 9 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 4 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591666
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900044625_TS20190091.MAGScoT_cleanbin_000015"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Sheep"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Ngari"
                     /lat_lon="32.5 N 80.06 E"
                     /collection_date="2019-09-19"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZQIJ010000001-JAZQIJ010000280
WGS_SCAFLD  NZ_JAZQIJ010000001-NZ_JAZQIJ010000280
//
LOCUS       NZ_JAZUMY010000000   2350713 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900044890_TS20190356.MAGScoT_cleanbin_000036, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZUMY000000000
VERSION     NZ_JAZUMY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37892327
            Assembly: GCF_045603845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2350713)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2350713)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2023) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZUMY000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZUMY000000000.  This version of the
            project (01) has the accession number NZ_JAZUMY010000000, and
            consists of sequences JAZUMY010000001-JAZUMY010000116.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045603845.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:08:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,330
            CDSs (total)                      :: 2,288
            Genes (coding)                    :: 2,235
            CDSs (with protein)               :: 2,235
            Genes (RNA)                       :: 42
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 3 of 53
            Pseudo Genes (incomplete)         :: 45 of 53
            Pseudo Genes (internal stop)      :: 6 of 53
            Pseudo Genes (multiple problems)  :: 1 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350713
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900044890_TS20190356.MAGScoT_cleanbin_000036"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Sheep"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Shigatse"
                     /lat_lon="30.22 N 82.33 E"
                     /collection_date="2019-09-14"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZUMY010000001-JAZUMY010000116
WGS_SCAFLD  NZ_JAZUMY010000001-NZ_JAZUMY010000116
//
LOCUS       NZ_JAZNAN010000000   1925122 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900044747_TS20190213.MAGScoT_cleanbin_000007, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZNAN000000000
VERSION     NZ_JAZNAN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37891737
            Assembly: GCF_045586545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1925122)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1925122)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2023) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZNAN000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZNAN000000000.  This version of the
            project (01) has the accession number NZ_JAZNAN010000000, and
            consists of sequences JAZNAN010000001-JAZNAN010000135.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045586545.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:13:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,029
            CDSs (total)                      :: 1,990
            Genes (coding)                    :: 1,972
            CDSs (with protein)               :: 1,972
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 3 of 18
            Pseudo Genes (incomplete)         :: 12 of 18
            Pseudo Genes (internal stop)      :: 3 of 18
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925122
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900044747_TS20190213.MAGScoT_cleanbin_000007"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Sheep"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Nagqu"
                     /lat_lon="31.25 N 91.79 E"
                     /collection_date="2019-10-05"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZNAN010000001-JAZNAN010000135
WGS_SCAFLD  NZ_JAZNAN010000001-NZ_JAZNAN010000135
//
LOCUS       NZ_JAZQFM010000000   2078758 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900044632_TS20190098.MAGScoT_cleanbin_000077, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZQFM000000000
VERSION     NZ_JAZQFM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37891161
            Assembly: GCF_045539575.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2078758)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2078758)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZQFM000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZQFM000000000.  This version of the
            project (01) has the accession number NZ_JAZQFM010000000, and
            consists of sequences JAZQFM010000001-JAZQFM010000086.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045539575.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:18:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,119
            CDSs (total)                      :: 2,074
            Genes (coding)                    :: 2,057
            CDSs (with protein)               :: 2,057
            Genes (RNA)                       :: 45
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 0 of 17
            Pseudo Genes (incomplete)         :: 16 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078758
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900044632_TS20190098.MAGScoT_cleanbin_000077"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Sheep"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Ngari"
                     /lat_lon="32.5 N 80.06 E"
                     /collection_date="2019-09-19"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZQFM010000001-JAZQFM010000086
WGS_SCAFLD  NZ_JAZQFM010000001-NZ_JAZQFM010000086
//
LOCUS       NZ_JAZKXX010000000   2012568 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900045112_TC20190106.MAGScoT_cleanbin_000022, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZKXX000000000
VERSION     NZ_JAZKXX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37892958
            Assembly: GCF_045611865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2012568)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2012568)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2024) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZKXX000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZKXX000000000.  This version of the
            project (01) has the accession number NZ_JAZKXX010000000, and
            consists of sequences JAZKXX010000001-JAZKXX010000080.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045611865.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:18:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,086
            CDSs (total)                      :: 2,045
            Genes (coding)                    :: 2,020
            CDSs (with protein)               :: 2,020
            Genes (RNA)                       :: 41
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 0 of 25
            Pseudo Genes (incomplete)         :: 23 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012568
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900045112_TC20190106.MAGScoT_cleanbin_000022"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Cattle"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Shigatse"
                     /lat_lon="28.43 N 85.26 E"
                     /collection_date="2019-09-26"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZKXX010000001-JAZKXX010000080
WGS_SCAFLD  NZ_JAZKXX010000001-NZ_JAZKXX010000080
//
LOCUS       NZ_JAZTXC010000000   2290962 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900045331_YK20190020.MAGScoT_cleanbin_000025, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZTXC000000000
VERSION     NZ_JAZTXC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37893809
            Assembly: GCF_045636185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2290962)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2290962)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZTXC000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZTXC000000000.  This version of the
            project (01) has the accession number NZ_JAZTXC010000000, and
            consists of sequences JAZTXC010000001-JAZTXC010000193.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045636185.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:19:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,153
            CDSs (total)                      :: 2,111
            Genes (coding)                    :: 2,055
            CDSs (with protein)               :: 2,055
            Genes (RNA)                       :: 42
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 3 of 56
            Pseudo Genes (incomplete)         :: 52 of 56
            Pseudo Genes (internal stop)      :: 4 of 56
            Pseudo Genes (multiple problems)  :: 3 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290962
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900045331_YK20190020.MAGScoT_cleanbin_000025"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Yak"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Shigatse"
                     /lat_lon="29.78 N 86.31 E"
                     /collection_date="2019-06-10"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZTXC010000001-JAZTXC010000193
WGS_SCAFLD  NZ_JAZTXC010000001-NZ_JAZTXC010000193
//
LOCUS       NZ_JAZRKF010000000   2621003 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900045450_YK20190141.MAGScoT_cleanbin_000011, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZRKF000000000
VERSION     NZ_JAZRKF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37894119
            Assembly: GCF_045646205.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2621003)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2621003)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2024) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZRKF000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZRKF000000000.  This version of the
            project (01) has the accession number NZ_JAZRKF010000000, and
            consists of sequences JAZRKF010000001-JAZRKF010000067.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045646205.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:23:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,410
            CDSs (total)                      :: 2,368
            Genes (coding)                    :: 2,344
            CDSs (with protein)               :: 2,344
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 2 of 24
            Pseudo Genes (incomplete)         :: 22 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621003
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900045450_YK20190141.MAGScoT_cleanbin_000011"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Yak"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Nyingchi"
                     /lat_lon="29.62 N 94.67 E"
                     /collection_date="2019-07-20"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZRKF010000001-JAZRKF010000067
WGS_SCAFLD  NZ_JAZRKF010000001-NZ_JAZRKF010000067
//
LOCUS       NZ_JAZRHE010000000   2108451 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900045484_YK20190178.MAGScoT_cleanbin_000058, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZRHE000000000
VERSION     NZ_JAZRHE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37894198
            Assembly: GCF_045644645.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2108451)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2108451)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2024) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZRHE000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZRHE000000000.  This version of the
            project (01) has the accession number NZ_JAZRHE010000000, and
            consists of sequences JAZRHE010000001-JAZRHE010000168.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045644645.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:21:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,176
            CDSs (total)                      :: 2,139
            Genes (coding)                    :: 2,106
            CDSs (with protein)               :: 2,106
            Genes (RNA)                       :: 37
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 5 of 33
            Pseudo Genes (incomplete)         :: 28 of 33
            Pseudo Genes (internal stop)      :: 3 of 33
            Pseudo Genes (multiple problems)  :: 3 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108451
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900045484_YK20190178.MAGScoT_cleanbin_000058"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Yak"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Ngari"
                     /lat_lon="30.58 N 82.49 E"
                     /collection_date="2019-09-23"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZRHE010000001-JAZRHE010000168
WGS_SCAFLD  NZ_JAZRHE010000001-NZ_JAZRHE010000168
//
LOCUS       NZ_JAZRJY010000000   2564387 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900045455_YK20190146.MAGScoT_cleanbin_000001, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZRJY000000000
VERSION     NZ_JAZRJY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37894126
            Assembly: GCF_045646045.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2564387)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2564387)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2024) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZRJY000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZRJY000000000.  This version of the
            project (01) has the accession number NZ_JAZRJY010000000, and
            consists of sequences JAZRJY010000001-JAZRJY010000166.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045646045.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:24:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,215
            CDSs (total)                      :: 2,177
            Genes (coding)                    :: 2,134
            CDSs (with protein)               :: 2,134
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 3 of 43
            Pseudo Genes (incomplete)         :: 42 of 43
            Pseudo Genes (internal stop)      :: 1 of 43
            Pseudo Genes (multiple problems)  :: 2 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564387
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900045455_YK20190146.MAGScoT_cleanbin_000001"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Yak"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Nyingchi"
                     /lat_lon="29.62 N 94.67 E"
                     /collection_date="2019-07-20"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZRJY010000001-JAZRJY010000166
WGS_SCAFLD  NZ_JAZRJY010000001-NZ_JAZRJY010000166
//
LOCUS       NZ_JAZUBV010000000   2199818 bp    DNA     linear   ENV 06-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900045316_YK20190005.MAGScoT_cleanbin_000001, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZUBV000000000
VERSION     NZ_JAZUBV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37893686
            Assembly: GCF_045638665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2199818)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2199818)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZUBV000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZUBV000000000.  This version of the
            project (01) has the accession number NZ_JAZUBV010000000, and
            consists of sequences JAZUBV010000001-JAZUBV010000147.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045638665.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:46:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,343
            CDSs (total)                      :: 2,294
            Genes (coding)                    :: 2,269
            CDSs (with protein)               :: 2,269
            Genes (RNA)                       :: 49
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 3 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199818
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900045316_YK20190005.MAGScoT_cleanbin_000001"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Yak"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Shigatse"
                     /lat_lon="29.78 N 86.31 E"
                     /collection_date="2019-06-10"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZUBV010000001-JAZUBV010000147
WGS_SCAFLD  NZ_JAZUBV010000001-NZ_JAZUBV010000147
//
LOCUS       NZ_JAZNIB010000000   2167943 bp    DNA     linear   ENV 07-DEC-2024
DEFINITION  MAG: Methanobrevibacter sp. isolate
            T1900044688_TS20190154.MAGScoT_cleanbin_000013, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZNIB000000000
VERSION     NZ_JAZNIB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37891541
            Assembly: GCF_045577275.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2167943)
  AUTHORS   Li,X.P.
  TITLE     A Unified Catalog of 14,062 Microbial Species Reference Genomes
            Provides New Insights into the Gut Microbiomes in High Altitude
            Mammals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2167943)
  AUTHORS   Shi,X.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2023) BGI, University of Chinese Academy of
            Sciences, Yantian District, Shenzhen 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZNIB000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZNIB000000000.  This version of the
            project (01) has the accession number NZ_JAZNIB010000000, and
            consists of sequences JAZNIB010000001-JAZNIB010000368.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Complete Genomics
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_045577275.1-RS_2024_12_06
            Annotation Date                   :: 12/06/2024 12:48:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,109
            CDSs (total)                      :: 2,073
            Genes (coding)                    :: 2,036
            CDSs (with protein)               :: 2,036
            Genes (RNA)                       :: 36
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 2 of 37
            Pseudo Genes (incomplete)         :: 34 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 1 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167943
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="T1900044688_TS20190154.MAGScoT_cleanbin_000013"
                     /isolation_source="high altitude fresh fecal sample"
                     /host="Tibetan Sheep"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="China: Shannan"
                     /lat_lon="28.89 N 90.66 E"
                     /collection_date="2019-07-30"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAZNIB010000001-JAZNIB010000368
WGS_SCAFLD  NZ_JAZNIB010000001-NZ_JAZNIB010000368
//
LOCUS       NZ_BMPD01000000      4169965 bp    DNA     linear   BCT 09-DEC-2024
DEFINITION  Haloarcula sebkhae strain JCM 19018, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMPD00000000
VERSION     NZ_BMPD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245276
            Assembly: GCF_014647415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sebkhae
  ORGANISM  Haloarcula sebkhae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4169965)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMPD00000000.1.
            The Haloarcula sebkhae whole genome shotgun (WGS) project has the
            project accession NZ_BMPD00000000.  This version of the project
            (01) has the accession number NZ_BMPD01000000, and consists of
            sequences BMPD01000001-BMPD01000026.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009067
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 142X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014647415.1-RS_2024_12_09
            Annotation Date                   :: 12/09/2024 17:14:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,288
            CDSs (total)                      :: 4,229
            Genes (coding)                    :: 4,126
            CDSs (with protein)               :: 4,126
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 5 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 47 of 103
            Pseudo Genes (incomplete)         :: 74 of 103
            Pseudo Genes (internal stop)      :: 31 of 103
            Pseudo Genes (multiple problems)  :: 38 of 103
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169965
                     /organism="Haloarcula sebkhae"
                     /mol_type="genomic DNA"
                     /strain="JCM 19018"
                     /culture_collection="JCM:19018"
                     /type_material="type strain of Haloarcula sebkhae"
                     /db_xref="taxon:932660"
WGS         BMPD01000001-BMPD01000026
WGS_SCAFLD  NZ_BMPD01000001-NZ_BMPD01000026
//
LOCUS       NZ_BMOO01000000      2813544 bp    DNA     linear   BCT 09-DEC-2024
DEFINITION  Halarchaeum rubridurum strain JCM 16108, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMOO00000000
VERSION     NZ_BMOO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245259
            Assembly: GCF_014647115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum rubridurum
  ORGANISM  Halarchaeum rubridurum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2813544)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMOO00000000.1.
            The Halarchaeum rubridurum whole genome shotgun (WGS) project has
            the project accession NZ_BMOO00000000.  This version of the project
            (01) has the accession number NZ_BMOO01000000, and consists of
            sequences BMOO01000001-BMOO01000025.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009017
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 142X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014647115.1-RS_2024_12_09
            Annotation Date                   :: 12/09/2024 17:10:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,942
            CDSs (total)                      :: 2,890
            Genes (coding)                    :: 2,826
            CDSs (with protein)               :: 2,826
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 24 of 64
            Pseudo Genes (incomplete)         :: 49 of 64
            Pseudo Genes (internal stop)      :: 9 of 64
            Pseudo Genes (multiple problems)  :: 12 of 64
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2813544
                     /organism="Halarchaeum rubridurum"
                     /mol_type="genomic DNA"
                     /strain="JCM 16108"
                     /culture_collection="JCM:16108"
                     /type_material="type strain of Halarchaeum rubridurum"
                     /db_xref="taxon:489911"
WGS         BMOO01000001-BMOO01000025
WGS_SCAFLD  NZ_BMOO01000001-NZ_BMOO01000025
//
LOCUS       NZ_BMOQ01000000      3141185 bp    DNA     linear   BCT 09-DEC-2024
DEFINITION  Halarchaeum nitratireducens strain JCM 16331, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMOQ00000000
VERSION     NZ_BMOQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245262
            Assembly: GCF_014647155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum nitratireducens
  ORGANISM  Halarchaeum nitratireducens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3141185)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMOQ00000000.1.
            The Halarchaeum nitratireducens whole genome shotgun (WGS) project
            has the project accession NZ_BMOQ00000000.  This version of the
            project (01) has the accession number NZ_BMOQ01000000, and consists
            of sequences BMOQ01000001-BMOQ01000027.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009021
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 142X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014647155.1-RS_2024_12_09
            Annotation Date                   :: 12/09/2024 17:18:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,279
            CDSs (total)                      :: 3,229
            Genes (coding)                    :: 3,153
            CDSs (with protein)               :: 3,153
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 32 of 76
            Pseudo Genes (incomplete)         :: 52 of 76
            Pseudo Genes (internal stop)      :: 16 of 76
            Pseudo Genes (multiple problems)  :: 19 of 76
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141185
                     /organism="Halarchaeum nitratireducens"
                     /mol_type="genomic DNA"
                     /strain="JCM 16331"
                     /culture_collection="JCM:16331"
                     /type_material="type strain of Halarchaeum
                     nitratireducens"
                     /db_xref="taxon:489913"
WGS         BMOQ01000001-BMOQ01000027
WGS_SCAFLD  NZ_BMOQ01000001-NZ_BMOQ01000027
//
LOCUS       NZ_JARBXM010000000   1785773 bp    DNA     linear   BCT 09-DEC-2024
DEFINITION  Candidatus Methanosphaera massiliense strain Vir-13MRS, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JARBXM000000000
VERSION     NZ_JARBXM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31841128
            Assembly: GCF_028890305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanosphaera massiliense
  ORGANISM  Candidatus Methanosphaera massiliense
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1785773)
  AUTHORS   Pilliol,V., Morsli,M., Terelier,L., Hassani,Y., Malat,I.,
            Guindo,C., Davoust,B., Lamglait,B., Drancourt,M., Aboudharam,G.,
            Grine,G. and Terrer,E.
  TITLE     Methanosphaera massiliense sp. nov. questioned zoonotic sources of
            human-associated methanogens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1785773)
  AUTHORS   Pilliol,V., Morsli,M., Terelier,L., Hassani,Y., Malat,I.,
            Guindo,C., Davoust,B., Lamglait,B., Drancourt,M., Aboudharam,G.,
            Grine,G. and Terrer,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2023) Aix Marseille university, Nimes University
            Hospital, 4 Place du Professeur Robert Debre, Nimes, Gard 30900,
            France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARBXM000000000.1.
            The Candidatus Methanosphaera massiliense whole genome shotgun
            (WGS) project has the project accession NZ_JARBXM000000000.  This
            version of the project (01) has the accession number
            NZ_JARBXM010000000, and consists of sequences
            JARBXM010000001-JARBXM010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-AUG-2022
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028890305.1-RS_2024_12_09
            Annotation Date                   :: 12/09/2024 18:20:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,724
            CDSs (total)                      :: 1,673
            Genes (coding)                    :: 1,663
            CDSs (with protein)               :: 1,663
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 3 of 10
            Pseudo Genes (incomplete)         :: 7 of 10
            Pseudo Genes (internal stop)      :: 1 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785773
                     /organism="Candidatus Methanosphaera massiliense"
                     /mol_type="genomic DNA"
                     /strain="Vir-13MRS"
                     /isolation_source="healthy human feces sample"
                     /host="Homo sapiens"
                     /type_material="reference strain of Candidatus
                     Methanosphaera massiliense"
                     /db_xref="taxon:3017187"
                     /geo_loc_name="France"
                     /collection_date="2022"
WGS         JARBXM010000001-JARBXM010000002
WGS_SCAFLD  NZ_JARBXM010000001-NZ_JARBXM010000002
//
LOCUS       NZ_JAXFCP010000000   1898509 bp    DNA     linear   ENV 10-DEC-2024
DEFINITION  MAG: Methanobrevibacter boviskoreani isolate SUG2196, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXFCP000000000
VERSION     NZ_JAXFCP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37949332
            Assembly: GCF_034174145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter boviskoreani (pig gut metagenome)
  ORGANISM  Methanobrevibacter boviskoreani
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1898509)
  AUTHORS   Holman,D.B., Kommadath,A. and Gzyl,K.E.
  TITLE     MAGs from fecal, vaginal, and milk samples from sows and piglets
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1898509)
  AUTHORS   Holman,D.B., Kommadath,A. and Gzyl,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXFCP000000000.1.
            The Methanobrevibacter boviskoreani whole genome shotgun (WGS)
            project has the project accession NZ_JAXFCP000000000.  This version
            of the project (01) has the accession number NZ_JAXFCP010000000,
            and consists of sequences JAXFCP010000001-JAXFCP010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.09786x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034174145.1-RS_2024_12_10
            Annotation Date                   :: 12/10/2024 04:35:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,670
            CDSs (total)                      :: 1,630
            Genes (coding)                    :: 1,617
            CDSs (with protein)               :: 1,617
            Genes (RNA)                       :: 40
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 2 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 2 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898509
                     /organism="Methanobrevibacter boviskoreani"
                     /mol_type="genomic DNA"
                     /isolate="SUG2196"
                     /isolation_source="feces"
                     /host="swine"
                     /db_xref="taxon:1348249"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /collection_date="2020"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JAXFCP010000001-JAXFCP010000030
WGS_SCAFLD  NZ_JAXFCP010000001-NZ_JAXFCP010000030
//
LOCUS       NZ_JAEKIW010000000   2115826 bp    DNA     linear   BCT 11-DEC-2024
DEFINITION  Archaeoglobus neptunius strain SE56, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEKIW000000000
VERSION     NZ_JAEKIW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17126929
            Assembly: GCF_016757965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Archaeoglobus neptunius
  ORGANISM  Archaeoglobus neptunius
            Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi;
            Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
REFERENCE   1  (bases 1 to 2115826)
  AUTHORS   Slobodkina,G., Allioux,M., Merkel,A., Alain,K., Jebbar,M. and
            Slobodkin,A.
  TITLE     Physiological and genomic properties of Archaeoglobus neptunius
            SE56T sp.nov., a novel hyperthermophilic archaeon isolated from a
            deep-sea hydrothermal vent
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2115826)
  AUTHORS   Slobodkina,G. and Allioux,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2020) Laboratory of Diversity and Ecology of
            Extremophilic Microorganisms, Research Center of Biotechnology Ras,
            Leneinsky Prospekt, 33/2, Moscow 119071, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEKIW000000000.1.
            The Archaeoglobus neptunius whole genome shotgun (WGS) project has
            the project accession NZ_JAEKIW000000000.  This version of the
            project (01) has the accession number NZ_JAEKIW010000000, and
            consists of sequences JAEKIW010000001-JAEKIW010000032.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v1.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 153.0x
            Sequencing Technology  :: IIllumina nanoMiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016757965.1-RS_2024_12_11
            Annotation Date                   :: 12/11/2024 17:05:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,483
            CDSs (total)                      :: 2,431
            Genes (coding)                    :: 2,404
            CDSs (with protein)               :: 2,404
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 5 of 27
            Pseudo Genes (incomplete)         :: 24 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            Pseudo Genes (multiple problems)  :: 3 of 27
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115826
                     /organism="Archaeoglobus neptunius"
                     /mol_type="genomic DNA"
                     /strain="SE56"
                     /isolation_source="marine hydrothermal vent chimney
                     ENVO:01000129"
                     /type_material="type strain of Archaeoglobus neptunius"
                     /db_xref="taxon:2798580"
                     /geo_loc_name="Atlantic Ocean: Mid-Atlantic Ridge"
                     /lat_lon="26.1369 N 44.8261 W"
                     /collection_date="2018"
WGS         JAEKIW010000001-JAEKIW010000032
WGS_SCAFLD  NZ_JAEKIW010000001-NZ_JAEKIW010000032
//
LOCUS       NZ_JMIY01000000      3197389 bp    DNA     linear   BCT 15-DEC-2024
DEFINITION  Candidatus Methanoperedens nitratireducens strain ANME-2d, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JMIY00000000
VERSION     NZ_JMIY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02713514
            Assembly: GCF_000685155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanoperedens nitratireducens
  ORGANISM  Candidatus Methanoperedens nitratireducens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; ANME-2 cluster; Candidatus
            Methanoperedentaceae; Candidatus Methanoperedens.
REFERENCE   1  (bases 1 to 3197389)
  AUTHORS   Haroon,M.F., Hu,S., Shi,Y., Imelfort,M., Keller,J., Hugenholtz,P.,
            Yuan,Z. and Tyson,G.W.
  TITLE     Anaerobic oxidation of methane coupled to nitrate reduction in a
            novel archaeal lineage
  JOURNAL   Nature 500 (7464), 567-570 (2013)
   PUBMED   23892779
  REMARK    Erratum:[Nature. 2013 Sep 26;501(7468):578]
REFERENCE   2  (bases 1 to 3197389)
  AUTHORS   Tyson,G.W., Imelfort,M. and Hugenholtz,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-APR-2014) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Research Road, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JMIY00000000.1.
            The Candidatus Methanoperedens nitratireducens whole genome shotgun
            (WGS) project has the project accession NZ_JMIY00000000.  This
            version of the project (01) has the accession number
            NZ_JMIY01000000, and consists of sequences
            JMIY01000001-JMIY01000010.
            Bacteria available from University of Queensland. Source DNA
            available from University of Queensland.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC NGS Cell v. JULY 2013
            Assembly Name         :: ANME2D V10
            Genome Coverage       :: 1000.0x
            Sequencing Technology :: Illumina HiSeq; IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000685155.1-RS_2024_12_15
            Annotation Date                   :: 12/15/2024 18:33:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,473
            CDSs (total)                      :: 3,422
            Genes (coding)                    :: 3,395
            CDSs (with protein)               :: 3,395
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 4 of 27
            Pseudo Genes (incomplete)         :: 21 of 27
            Pseudo Genes (internal stop)      :: 5 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197389
                     /organism="Candidatus Methanoperedens nitratireducens"
                     /mol_type="genomic DNA"
                     /strain="ANME-2d"
                     /isolation_source="freshwater lake sediment grown in
                     bioreactor fed with nitrate, ammonium and methane"
                     /db_xref="taxon:1392998"
                     /geo_loc_name="Australia"
                     /lat_lon="27.499063 S 153.016382 E"
                     /collection_date="2009-01-01"
WGS         JMIY01000001-JMIY01000010
WGS_SCAFLD  NZ_JMIY01000001-NZ_JMIY01000010
//
LOCUS       NZ_NTMG01000000      3735583 bp    DNA     linear   BCT 16-DEC-2024
DEFINITION  Candidatus Methanoperedens sp. BLZ2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NTMG00000000
VERSION     NZ_NTMG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07620899
            Assembly: GCF_002487355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanoperedens sp. BLZ2
  ORGANISM  Candidatus Methanoperedens sp. BLZ2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; ANME-2 cluster; Candidatus
            Methanoperedentaceae; Candidatus Methanoperedens.
REFERENCE   1  (bases 1 to 3735583)
  AUTHORS   Berger,S., Frank,J., Dalcin Martins,P., Jetten,M.S. and Welte,C.U.
  TITLE     High quality draft genome sequence of Candidatus Methanoperedens
            BLZ2, a nitrate-reducing anaerobic methane-oxidizing archaeon
            enriched in an anoxic bioreactor
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3735583)
  AUTHORS   Berger,S., Frank,J., Dalcin Martins,P., Jetten,M.S. and Welte,C.U.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2017) Microbiology, Radboud University,
            Heyendaalseweg 135, Nijmegen, Gelderland 6525 AJ, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NTMG00000000.1.
            The Candidatus Methanoperedens sp. BLZ2 whole genome shotgun (WGS)
            project has the project accession NZ_NTMG00000000.  This version of
            the project (01) has the accession number NZ_NTMG01000000, and
            consists of sequences NTMG01000001-NTMG01000085.
            Bacteria and source DNA available from Radboud University,
            Department of Microbiology, Chair Prof. Dr. Mike Jetten,
            m.jetten@science.ru.nl.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2016
            Assembly Method        :: CLCgenomics workbench v. 9.5.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002487355.1-RS_2024_12_15
            Annotation Date                   :: 12/15/2024 23:39:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,062
            CDSs (total)                      :: 4,016
            Genes (coding)                    :: 3,979
            CDSs (with protein)               :: 3,979
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 6 of 37
            Pseudo Genes (incomplete)         :: 28 of 37
            Pseudo Genes (internal stop)      :: 5 of 37
            Pseudo Genes (multiple problems)  :: 2 of 37
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735583
                     /organism="Candidatus Methanoperedens sp. BLZ2"
                     /mol_type="genomic DNA"
                     /isolate="BLZ2"
                     /isolation_source="sediment"
                     /db_xref="taxon:2035255"
                     /geo_loc_name="Netherlands: Nijmegen"
                     /lat_lon="51.82 N 5.86 E"
                     /collection_date="2016-10"
WGS         NTMG01000001-NTMG01000085
WGS_SCAFLD  NZ_NTMG01000001-NZ_NTMG01000085
//
LOCUS       NZ_FZMP01000000      3524740 bp    DNA     linear   BCT 16-DEC-2024
DEFINITION  Candidatus Methanoperedens nitratireducens isolate Mnv1, whole
            genome shotgun sequencing project.
ACCESSION   NZ_FZMP00000000
VERSION     NZ_FZMP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104141092
            Assembly: GCF_900196725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanoperedens nitratireducens
  ORGANISM  Candidatus Methanoperedens nitratireducens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; ANME-2 cluster; Candidatus
            Methanoperedentaceae; Candidatus Methanoperedens.
REFERENCE   1
  AUTHORS   Cremers,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2017) RADBOUD UNIVERSITY NIJMEGEN, Heyendaalseweg
            135, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FZMP00000000.1.
            The Candidatus Methanoperedens nitratireducens whole genome shotgun
            (WGS) project has the project accession NZ_FZMP00000000.  This
            version of the project (01) has the accession number
            NZ_FZMP01000000, and consists of sequences
            FZMP01000001-FZMP01000250.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900196725.1-RS_2024_12_15
            Annotation Date                   :: 12/15/2024 23:39:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,929
            CDSs (total)                      :: 3,873
            Genes (coding)                    :: 3,774
            CDSs (with protein)               :: 3,774
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 45 of 99
            Pseudo Genes (incomplete)         :: 58 of 99
            Pseudo Genes (internal stop)      :: 5 of 99
            Pseudo Genes (multiple problems)  :: 9 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3524740
                     /organism="Candidatus Methanoperedens nitratireducens"
                     /mol_type="genomic DNA"
                     /isolate="Mnv1"
                     /isolation_source="reactor mass"
                     /db_xref="taxon:1392998"
WGS         FZMP01000001-FZMP01000250
WGS_SCAFLD  NZ_FZMP01000001-NZ_FZMP01000250
//
LOCUS       NZ_JBANCJ010000000   1981970 bp    DNA     linear   BCT 16-DEC-2024
DEFINITION  Methanobrevibacter gottschalkii strain EGK, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBANCJ000000000
VERSION     NZ_JBANCJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39861756
            Assembly: GCF_046062545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter gottschalkii
  ORGANISM  Methanobrevibacter gottschalkii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1981970)
  AUTHORS   Volmer,J.G. and Morrison,M.
  TITLE     Isolation of a Methanobrevibacter gottschalkii strain from an
            Eastern Grey Kangaroo
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1981970)
  AUTHORS   Volmer,J.G. and Morrison,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2024) Frazer Institute, University of Queensland,
            37 Kent Street, Brisbane, Qld 4102, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBANCJ000000000.1.
            The Methanobrevibacter gottschalkii whole genome shotgun (WGS)
            project has the project accession NZ_JBANCJ000000000.  This version
            of the project (01) has the accession number NZ_JBANCJ010000000,
            and consists of sequences JBANCJ010000001-JBANCJ010000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Morrison Lab, University of
            Queensland.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2024
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 76.6x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046062545.1-RS_2024_12_15
            Annotation Date                   :: 12/15/2024 12:19:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,065
            CDSs (total)                      :: 2,020
            Genes (coding)                    :: 1,997
            CDSs (with protein)               :: 1,997
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 10 of 23
            Pseudo Genes (incomplete)         :: 11 of 23
            Pseudo Genes (internal stop)      :: 5 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981970
                     /organism="Methanobrevibacter gottschalkii"
                     /mol_type="genomic DNA"
                     /strain="EGK"
                     /db_xref="taxon:190974"
                     /geo_loc_name="Australia: Brisbane"
                     /collection_date="2020"
WGS         JBANCJ010000001-JBANCJ010000047
WGS_SCAFLD  NZ_JBANCJ010000001-NZ_JBANCJ010000047
//
LOCUS       NZ_JAVYOV010000000   1999894 bp    DNA     linear   ENV 17-DEC-2024
DEFINITION  MAG: Pyrobaculum sp. isolate DRTY-1_201808_bins_22, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYOV000000000
VERSION     NZ_JAVYOV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036728
            Assembly: GCF_038733985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 1999894)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999894)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYOV000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYOV000000000.  This version of the project
            (01) has the accession number NZ_JAVYOV010000000, and consists of
            sequences JAVYOV010000001-JAVYOV010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 284.23964636801423x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038733985.1-RS_2024_12_16
            Annotation Date                   :: 12/16/2024 15:08:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,395
            CDSs (total)                      :: 2,347
            Genes (coding)                    :: 2,308
            CDSs (with protein)               :: 2,308
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 11 of 39
            Pseudo Genes (incomplete)         :: 28 of 39
            Pseudo Genes (internal stop)      :: 8 of 39
            Pseudo Genes (multiple problems)  :: 6 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999894
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-1_201808_bins_22"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-1
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYOV010000001-JAVYOV010000029
WGS_SCAFLD  NZ_JAVYOV010000001-NZ_JAVYOV010000029
//
LOCUS       NZ_JAVZPI010000000   2229237 bp    DNA     linear   ENV 17-DEC-2024
DEFINITION  MAG: Pyrobaculum sp. isolate DRTY-7_201601_bins_1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZPI000000000
VERSION     NZ_JAVZPI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037417
            Assembly: GCF_038881655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2229237)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229237)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZPI000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZPI000000000.  This version of the project
            (01) has the accession number NZ_JAVZPI010000000, and consists of
            sequences JAVZPI010000001-JAVZPI010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45.07130670590631x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038881655.1-RS_2024_12_16
            Annotation Date                   :: 12/16/2024 15:12:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,643
            CDSs (total)                      :: 2,591
            Genes (coding)                    :: 2,529
            CDSs (with protein)               :: 2,529
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 15 of 62
            Pseudo Genes (incomplete)         :: 45 of 62
            Pseudo Genes (internal stop)      :: 13 of 62
            Pseudo Genes (multiple problems)  :: 9 of 62
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229237
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-7_201601_bins_1"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-7
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2016-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZPI010000001-JAVZPI010000044
WGS_SCAFLD  NZ_JAVZPI010000001-NZ_JAVZPI010000044
//
LOCUS       NZ_JAVZSU010000000   2104242 bp    DNA     linear   ENV 17-DEC-2024
DEFINITION  MAG: Pyrobaculum sp. isolate DRTY-8_201705_bins_25, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVZSU000000000
VERSION     NZ_JAVZSU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037507
            Assembly: GCF_038879875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2104242)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104242)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZSU000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVZSU000000000.  This version of the project
            (01) has the accession number NZ_JAVZSU010000000, and consists of
            sequences JAVZSU010000001-JAVZSU010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.76975254719432x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038879875.1-RS_2024_12_16
            Annotation Date                   :: 12/16/2024 15:07:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,530
            CDSs (total)                      :: 2,481
            Genes (coding)                    :: 2,409
            CDSs (with protein)               :: 2,409
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 11 of 72
            Pseudo Genes (incomplete)         :: 60 of 72
            Pseudo Genes (internal stop)      :: 11 of 72
            Pseudo Genes (multiple problems)  :: 8 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104242
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-8_201705_bins_25"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-8
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZSU010000001-JAVZSU010000050
WGS_SCAFLD  NZ_JAVZSU010000001-NZ_JAVZSU010000050
//
LOCUS       NZ_JAWAGT010000000   2006984 bp    DNA     linear   ENV 17-DEC-2024
DEFINITION  MAG: Pyrobaculum sp. isolate SRBZ_201705_bins_168, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAWAGT000000000
VERSION     NZ_JAWAGT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038039
            Assembly: GCF_038889775.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2006984)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006984)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWAGT000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWAGT000000000.  This version of the project
            (01) has the accession number NZ_JAWAGT010000000, and consists of
            sequences JAWAGT010000001-JAWAGT010000055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75.16873294281417x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038889775.1-RS_2024_12_16
            Annotation Date                   :: 12/16/2024 15:13:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,422
            CDSs (total)                      :: 2,381
            Genes (coding)                    :: 2,305
            CDSs (with protein)               :: 2,305
            Genes (RNA)                       :: 41
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 16 of 76
            Pseudo Genes (incomplete)         :: 60 of 76
            Pseudo Genes (internal stop)      :: 8 of 76
            Pseudo Genes (multiple problems)  :: 6 of 76
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006984
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="SRBZ_201705_bins_168"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, SRBZ pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-05"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWAGT010000001-JAWAGT010000055
WGS_SCAFLD  NZ_JAWAGT010000001-NZ_JAWAGT010000055
//
LOCUS       NZ_JAVYKV010000000   2291294 bp    DNA     linear   ENV 17-DEC-2024
DEFINITION  MAG: Pyrobaculum sp. isolate BF2_201808_bins_6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVYKV000000000
VERSION     NZ_JAVYKV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36036624
            Assembly: GCF_038741575.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2291294)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2291294)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYKV000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYKV000000000.  This version of the project
            (01) has the accession number NZ_JAVYKV010000000, and consists of
            sequences JAVYKV010000001-JAVYKV010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 177.13130394556683x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038741575.1-RS_2024_12_16
            Annotation Date                   :: 12/16/2024 15:17:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,692
            CDSs (total)                      :: 2,644
            Genes (coding)                    :: 2,582
            CDSs (with protein)               :: 2,582
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 17 of 62
            Pseudo Genes (incomplete)         :: 43 of 62
            Pseudo Genes (internal stop)      :: 14 of 62
            Pseudo Genes (multiple problems)  :: 10 of 62
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291294
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="BF2_201808_bins_6"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, BF2 pool"
                     /lat_lon="24.91 N 98.39 E"
                     /collection_date="2018-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVYKV010000001-JAVYKV010000041
WGS_SCAFLD  NZ_JAVYKV010000001-NZ_JAVYKV010000041
//
LOCUS       NZ_JAWAQL010000000   2110550 bp    DNA     linear   ENV 17-DEC-2024
DEFINITION  MAG: Pyrobaculum sp. isolate ZMQL_201709_bins_12, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAWAQL000000000
VERSION     NZ_JAWAQL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36038291
            Assembly: GCF_038893935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2110550)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110550)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWAQL000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWAQL000000000.  This version of the project
            (01) has the accession number NZ_JAWAQL010000000, and consists of
            sequences JAWAQL010000001-JAWAQL010000086.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35.389005892840146x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038893935.1-RS_2024_12_16
            Annotation Date                   :: 12/16/2024 15:18:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,551
            CDSs (total)                      :: 2,506
            Genes (coding)                    :: 2,430
            CDSs (with protein)               :: 2,430
            Genes (RNA)                       :: 45
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 44
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 12 of 76
            Pseudo Genes (incomplete)         :: 63 of 76
            Pseudo Genes (internal stop)      :: 9 of 76
            Pseudo Genes (multiple problems)  :: 6 of 76
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110550
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="ZMQL_201709_bins_12"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, ZMQL pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2017-09"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWAQL010000001-JAWAQL010000086
WGS_SCAFLD  NZ_JAWAQL010000001-NZ_JAWAQL010000086
//
LOCUS       NZ_JAZDDI010000000   4158002 bp    DNA     linear   BCT 17-DEC-2024
DEFINITION  Halalkalicoccus salilacus strain SEDH24, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAZDDI000000000
VERSION     NZ_JAZDDI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39596246
            Assembly: GCF_037081695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus salilacus
  ORGANISM  Halalkalicoccus salilacus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 4158002)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4158002)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZDDI000000000.1.
            The Halalkalicoccus salilacus whole genome shotgun (WGS) project
            has the project accession NZ_JAZDDI000000000.  This version of the
            project (01) has the accession number NZ_JAZDDI010000000, and
            consists of sequences JAZDDI010000001-JAZDDI010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 686.94x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037081695.1-RS_2024_12_17
            Annotation Date                   :: 12/17/2024 05:00:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,335
            CDSs (total)                      :: 4,280
            Genes (coding)                    :: 4,153
            CDSs (with protein)               :: 4,153
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 53 of 127
            Pseudo Genes (incomplete)         :: 87 of 127
            Pseudo Genes (internal stop)      :: 11 of 127
            Pseudo Genes (multiple problems)  :: 23 of 127
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158002
                     /organism="Halalkalicoccus salilacus"
                     /mol_type="genomic DNA"
                     /strain="SEDH24"
                     /isolation_source="sediment"
                     /db_xref="taxon:3117459"
                     /geo_loc_name="China: Tibet"
                     /collection_date="2018-07"
WGS         JAZDDI010000001-JAZDDI010000014
WGS_SCAFLD  NZ_JAZDDI010000001-NZ_JAZDDI010000014
//
LOCUS       NZ_JBDFRA010000000   2510985 bp    DNA     linear   BCT 20-DEC-2024
DEFINITION  Halobacterium salinarum strain AD88, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBDFRA000000000
VERSION     NZ_JBDFRA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41213919
            Assembly: GCF_046226875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2510985)
  AUTHORS   Rodriguez,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2024) Departamento de Ecologia Evolutiva,
            Instituto de Ecologia, Circuito Exterior sn Anexo al Jardin
            Botanico, Mexico City 04510, Mexico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDFRA000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JBDFRA000000000.  This version of the
            project (01) has the accession number NZ_JBDFRA010000000, and
            consists of sequences JBDFRA010000001-JBDFRA010000084.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Michael Travisano/Naui
            Medina.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-MAY-2024
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046226875.1-RS_2024_12_20
            Annotation Date                   :: 12/20/2024 04:15:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,607
            Genes (coding)                    :: 2,535
            CDSs (with protein)               :: 2,535
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 16 of 72
            Pseudo Genes (incomplete)         :: 63 of 72
            Pseudo Genes (internal stop)      :: 8 of 72
            Pseudo Genes (multiple problems)  :: 13 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2510985
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="AD88"
                     /isolation_source="environmental"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Mexico: Cuatro Cienegas, Coahuila"
                     /altitude="720 m"
                     /collection_date="2016-04"
                     /collected_by="Instituto de Ecologia"
                     /identified_by="Nahui Medina"
WGS         JBDFRA010000001-JBDFRA010000084
WGS_SCAFLD  NZ_JBDFRA010000001-NZ_JBDFRA010000084
//
LOCUS       NZ_ACUK01000000      2680466 bp    DNA     linear   BCT 21-DEC-2024
DEFINITION  Saccharolobus solfataricus 98/2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ACUK00000000
VERSION     NZ_ACUK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00001854
            Assembly: GCF_000175555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus solfataricus 98/2
  ORGANISM  Saccharolobus solfataricus 98/2
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2680466)
  AUTHORS   Krishnan,V., Jiwan,D., Koepke,T., Schaeffer,S., Kalyanaraman,A.,
            Rolfsmeier,M., Galbraith,A., Dhingra,A. and Haseltine,C.
  TITLE     454 Sequencing of Sulfolobus solfataricus strain 98/2 and
            comparative analysis with Sulfolobales
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2680466)
  AUTHORS   Krishnan,V., Jiwan,D., Koepke,T., Schaeffer,S., Kalyanaraman,A.,
            Rolfsmeier,M., Galbraith,A., Dhingra,A. and Haseltine,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) Horticulture and Landscape Architecture,
            Washington State Univerity, Pullman, WA 99163, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ACUK00000000.1.
            The Saccharolobus solfataricus 98/2 whole genome shotgun (WGS)
            project has the project accession NZ_ACUK00000000.  This version of
            the project (01) has the accession number NZ_ACUK01000000, and
            consists of sequences ACUK01000001-ACUK01000506.
            Source DNA available from Cynthia Haseltine from Washington State
            University.
            Genome Coverage: 21x
            Sequencing Technology: 454.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000175555.1-RS_2024_12_21
            Annotation Date                   :: 12/21/2024 12:11:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,047
            CDSs (total)                      :: 2,997
            Genes (coding)                    :: 2,733
            CDSs (with protein)               :: 2,733
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 264
            CDSs (without protein)            :: 264
            Pseudo Genes (ambiguous residues) :: 0 of 264
            Pseudo Genes (frameshifted)       :: 94 of 264
            Pseudo Genes (incomplete)         :: 217 of 264
            Pseudo Genes (internal stop)      :: 24 of 264
            Pseudo Genes (multiple problems)  :: 64 of 264
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680466
                     /organism="Saccharolobus solfataricus 98/2"
                     /mol_type="genomic DNA"
                     /strain="98/2"
                     /db_xref="taxon:555311"
WGS         ACUK01000001-ACUK01000506
WGS_SCAFLD  NZ_ACUK01000001-NZ_ACUK01000506
//
LOCUS       NZ_JADEZV010000000   1284168 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Fervidicoccus fontis strain 3639Fd, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADEZV000000000
VERSION     NZ_JADEZV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16551757
            Assembly: GCF_015209645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Fervidicoccus fontis
  ORGANISM  Fervidicoccus fontis
            Archaea; Thermoproteota; Thermoprotei; Fervidicoccales;
            Fervidicoccaceae; Fervidicoccus.
REFERENCE   1  (bases 1 to 1284168)
  AUTHORS   Kochetkova,T.V., Elcheninov,A.G., Toschakov,S.V. and Kublanov,I.V.
  TITLE     Fervidococcus fontis strain 3639Fd - the first crenarchaeon capable
            of growth on lipids
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1284168)
  AUTHORS   Elcheninov,A.G., Toschakov,S.V., Kochetkova,T.V. and Kublanov,I.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2020) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADEZV000000000.1.
            The Fervidicoccus fontis whole genome shotgun (WGS) project has the
            project accession NZ_JADEZV000000000.  This version of the project
            (01) has the accession number NZ_JADEZV010000000, and consists of
            sequences JADEZV010000001-JADEZV010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Extremophiles Metabolism Lab
            (Research Center of Biotechnology RAS).
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 07-AUG-2019
            Assembly Method        :: Unicycler v. 0.4.8-beta
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 248.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015209645.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 03:14:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,395
            CDSs (total)                      :: 1,347
            Genes (coding)                    :: 1,328
            CDSs (with protein)               :: 1,328
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 2 of 19
            Pseudo Genes (incomplete)         :: 17 of 19
            Pseudo Genes (internal stop)      :: 4 of 19
            Pseudo Genes (multiple problems)  :: 3 of 19
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1284168
                     /organism="Fervidicoccus fontis"
                     /mol_type="genomic DNA"
                     /strain="3639Fd"
                     /isolation_source="hot spring in caldera Uzon"
                     /db_xref="taxon:683846"
                     /geo_loc_name="Russia: Kamchatka"
                     /lat_lon="54.500083 N 160.0122 E"
                     /collection_date="2018-08"
                     /collected_by="Perevalova, A. A."
WGS         JADEZV010000001-JADEZV010000010
WGS_SCAFLD  NZ_JADEZV010000001-NZ_JADEZV010000010
//
LOCUS       NZ_JAZDDH010000000   3639842 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Halalkalicoccus ordinarius strain CG83, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAZDDH000000000
VERSION     NZ_JAZDDH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39596211
            Assembly: GCF_037081715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus ordinarius
  ORGANISM  Halalkalicoccus ordinarius
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 3639842)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3639842)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZDDH000000000.1.
            The Halalkalicoccus ordinarius whole genome shotgun (WGS) project
            has the project accession NZ_JAZDDH000000000.  This version of the
            project (01) has the accession number NZ_JAZDDH010000000, and
            consists of sequences JAZDDH010000001-JAZDDH010000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 805.73x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037081715.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:55:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,805
            CDSs (total)                      :: 3,752
            Genes (coding)                    :: 3,670
            CDSs (with protein)               :: 3,670
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 29 of 82
            Pseudo Genes (incomplete)         :: 57 of 82
            Pseudo Genes (internal stop)      :: 18 of 82
            Pseudo Genes (multiple problems)  :: 17 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3639842
                     /organism="Halalkalicoccus ordinarius"
                     /mol_type="genomic DNA"
                     /strain="CG83"
                     /isolation_source="sediment"
                     /type_material="type strain of Halalkalicoccus ordinarius"
                     /db_xref="taxon:3116651"
                     /geo_loc_name="China: Inner Mongolia"
                     /collection_date="2018-05"
WGS         JAZDDH010000001-JAZDDH010000006
WGS_SCAFLD  NZ_JAZDDH010000001-NZ_JAZDDH010000006
//
LOCUS       NZ_AHJM01000000      2635815 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJM00000000
VERSION     NZ_AHJM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471814
            Assembly: GCF_000245135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.13
  ORGANISM  Saccharolobus islandicus M.16.13
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2635815)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2635815)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJM00000000.1.
            The Saccharolobus islandicus M.16.13 whole genome shotgun (WGS)
            project has the project accession NZ_AHJM00000000.  This version of
            the project (01) has the accession number NZ_AHJM01000000, and
            consists of sequences AHJM01000001-AHJM01000003.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M1627
            (Accession: NC_012632.1).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: GS De Novo Assembler v. 2.0.00; Consed v.
                                     19
            Genome Coverage       :: 19.0x
            Sequencing Technology :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245135.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:03:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,912
            CDSs (total)                      :: 2,861
            Genes (coding)                    :: 2,599
            CDSs (with protein)               :: 2,599
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 262
            CDSs (without protein)            :: 262
            Pseudo Genes (ambiguous residues) :: 0 of 262
            Pseudo Genes (frameshifted)       :: 207 of 262
            Pseudo Genes (incomplete)         :: 89 of 262
            Pseudo Genes (internal stop)      :: 33 of 262
            Pseudo Genes (multiple problems)  :: 60 of 262
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2635815
                     /organism="Saccharolobus islandicus M.16.13"
                     /mol_type="genomic DNA"
                     /strain="M.16.13"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132499"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJM01000001-AHJM01000003
WGS_SCAFLD  NZ_AHJM01000001-NZ_AHJM01000003
//
LOCUS       NZ_AHJK01000000      2645252 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJK00000000
VERSION     NZ_AHJK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471813
            Assembly: GCF_000245095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.2
  ORGANISM  Saccharolobus islandicus M.16.2
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2645252)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2645252)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJK00000000.1.
            The Saccharolobus islandicus M.16.2 whole genome shotgun (WGS)
            project has the project accession NZ_AHJK00000000.  This version of
            the project (01) has the accession number NZ_AHJK01000000, and
            consists of sequence AHJK01000001.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M164
            (Accession: NC_012726.1).
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: GS De Novo Assembler v. 2.0.00; Consed
                                        v. 19
            Genome Coverage          :: 28.3x
            Sequencing Technology    :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245095.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:01:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,931
            CDSs (total)                      :: 2,880
            Genes (coding)                    :: 2,602
            CDSs (with protein)               :: 2,602
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 278
            CDSs (without protein)            :: 278
            Pseudo Genes (ambiguous residues) :: 0 of 278
            Pseudo Genes (frameshifted)       :: 204 of 278
            Pseudo Genes (incomplete)         :: 101 of 278
            Pseudo Genes (internal stop)      :: 30 of 278
            Pseudo Genes (multiple problems)  :: 50 of 278
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645252
                     /organism="Saccharolobus islandicus M.16.2"
                     /mol_type="genomic DNA"
                     /strain="M.16.2"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132497"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJK01000001
WGS_SCAFLD  NZ_AHJK01000001
//
LOCUS       NZ_AHJL01000000      2680814 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJL00000000
VERSION     NZ_AHJL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471807
            Assembly: GCF_000245115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.12
  ORGANISM  Saccharolobus islandicus M.16.12
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2680814)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2680814)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJL00000000.1.
            The Saccharolobus islandicus M.16.12 whole genome shotgun (WGS)
            project has the project accession NZ_AHJL00000000.  This version of
            the project (01) has the accession number NZ_AHJL01000000, and
            consists of sequences AHJL01000001-AHJL01000005.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M1627
            (Accession: NC_012632.1).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: GS De Novo Assembler v. 2.0.00; Consed v.
                                     19
            Genome Coverage       :: 20.7x
            Sequencing Technology :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245115.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:16:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,006
            CDSs (total)                      :: 2,954
            Genes (coding)                    :: 2,637
            CDSs (with protein)               :: 2,637
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 317
            CDSs (without protein)            :: 317
            Pseudo Genes (ambiguous residues) :: 0 of 317
            Pseudo Genes (frameshifted)       :: 214 of 317
            Pseudo Genes (incomplete)         :: 133 of 317
            Pseudo Genes (internal stop)      :: 47 of 317
            Pseudo Genes (multiple problems)  :: 68 of 317
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680814
                     /organism="Saccharolobus islandicus M.16.12"
                     /mol_type="genomic DNA"
                     /strain="M.16.12"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132498"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJL01000001-AHJL01000005
WGS_SCAFLD  NZ_AHJL01000001-NZ_AHJL01000005
//
LOCUS       NZ_JADAMM010000000   2384613 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus strain REY15A EndoMS Knockout, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JADAMM000000000
VERSION     NZ_JADAMM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16220128
            Assembly: GCF_016415665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus
  ORGANISM  Saccharolobus islandicus
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2384613)
  AUTHORS   Ahmad,S., Huang,Q., Ni,J., Xiao,Y., Yang,Y. and Shen,Y.
  TITLE     Functional Analysis of the NucS/EndoMS of the Hyperthermophilic
            Archaeon Sulfolobus islandicus REY15A
  JOURNAL   Front Microbiol 11, 607431 (2020)
   PUBMED   33335523
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384613)
  AUTHORS   Ahmad,S., Huang,Q. and Shen,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2020) Microbial Technology Institute, Shandong
            University, 72 Binhai Road, Jimo, Qingdao, Shandong 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADAMM000000000.1.
            The Saccharolobus islandicus whole genome shotgun (WGS) project has
            the project accession NZ_JADAMM000000000.  This version of the
            project (01) has the accession number NZ_JADAMM010000000, and
            consists of sequences JADAMM010000001-JADAMM010000098.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. SEP-2019
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016415665.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:26:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,694
            CDSs (total)                      :: 2,643
            Genes (coding)                    :: 2,499
            CDSs (with protein)               :: 2,499
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 67 of 144
            Pseudo Genes (incomplete)         :: 105 of 144
            Pseudo Genes (internal stop)      :: 17 of 144
            Pseudo Genes (multiple problems)  :: 38 of 144
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384613
                     /organism="Saccharolobus islandicus"
                     /mol_type="genomic DNA"
                     /strain="REY15A EndoMS Knockout"
                     /isolation_source="solfataric hot spring"
                     /db_xref="taxon:43080"
                     /geo_loc_name="Iceland: Reykjanes"
                     /collection_date="2019"
WGS         JADAMM010000001-JADAMM010000098
WGS_SCAFLD  NZ_JADAMM010000001-NZ_JADAMM010000098
//
LOCUS       NZ_JAFMCX010000000   2186892 bp    DNA     linear   ENV 22-DEC-2024
DEFINITION  MAG: Saccharolobus islandicus isolate CPBay_Spr30G08_30, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAFMCX000000000
VERSION     NZ_JAFMCX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17496017
            Assembly: GCF_017857535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus islandicus (aquatic metagenome)
  ORGANISM  Saccharolobus islandicus
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2186892)
  AUTHORS   Campbell,B.J.
  TITLE     Metagenome Assembled Genomes (MAGs) from the Chesapeake and
            Delaware Bays
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2186892)
  AUTHORS   Campbell,B.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2021) Biological Sciences, Clemson University,
            105 Sikes Hall, Clemson, SC 29634, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFMCX000000000.1.
            The Saccharolobus islandicus whole genome shotgun (WGS) project has
            the project accession NZ_JAFMCX000000000.  This version of the
            project (01) has the accession number NZ_JAFMCX010000000, and
            consists of sequences JAFMCX010000001-JAFMCX010000145.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 7x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017857535.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:25:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,511
            CDSs (total)                      :: 2,462
            Genes (coding)                    :: 2,324
            CDSs (with protein)               :: 2,324
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 54 of 138
            Pseudo Genes (incomplete)         :: 98 of 138
            Pseudo Genes (internal stop)      :: 19 of 138
            Pseudo Genes (multiple problems)  :: 29 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186892
                     /organism="Saccharolobus islandicus"
                     /mol_type="genomic DNA"
                     /isolate="CPBay_Spr30G08_30"
                     /isolation_source="Chesapeake Bay"
                     /db_xref="taxon:43080"
                     /environmental_sample
                     /geo_loc_name="USA: Chesapeake Bay"
                     /lat_lon="37.1043 N 76.1811 W"
                     /collection_date="2015-04-16"
                     /metagenome_source="aquatic metagenome"
                     /metagenomic
WGS         JAFMCX010000001-JAFMCX010000145
WGS_SCAFLD  NZ_JAFMCX010000001-NZ_JAFMCX010000145
//
LOCUS       NZ_JADAML010000000   2429154 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus strain REY15A, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JADAML000000000
VERSION     NZ_JADAML000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16220121
            Assembly: GCF_016415645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus
  ORGANISM  Saccharolobus islandicus
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2429154)
  AUTHORS   Ahmad,S., Huang,Q., Ni,J., Xiao,Y., Yang,Y. and Shen,Y.
  TITLE     Functional Analysis of the NucS/EndoMS of the Hyperthermophilic
            Archaeon Sulfolobus islandicus REY15A
  JOURNAL   Front Microbiol 11, 607431 (2020)
   PUBMED   33335523
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2429154)
  AUTHORS   Ahmad,S., Huang,Q. and Shen,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2020) Microbial Technology Institute, Shandong
            University, 72 Binhai Road, Jimo, Qingdao, Shandong 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADAML000000000.1.
            The Saccharolobus islandicus whole genome shotgun (WGS) project has
            the project accession NZ_JADAML000000000.  This version of the
            project (01) has the accession number NZ_JADAML010000000, and
            consists of sequences JADAML010000001-JADAML010000141.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 07-SEP-2019
            Assembly Method        :: SOAPdenovo v. SEP-2019
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016415645.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:23:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,769
            CDSs (total)                      :: 2,718
            Genes (coding)                    :: 2,539
            CDSs (with protein)               :: 2,539
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 78 of 179
            Pseudo Genes (incomplete)         :: 136 of 179
            Pseudo Genes (internal stop)      :: 19 of 179
            Pseudo Genes (multiple problems)  :: 47 of 179
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429154
                     /organism="Saccharolobus islandicus"
                     /mol_type="genomic DNA"
                     /strain="REY15A"
                     /isolation_source="solfataric hot spring"
                     /db_xref="taxon:43080"
                     /geo_loc_name="Iceland: Reykjanes"
                     /collection_date="2019"
WGS         JADAML010000001-JADAML010000141
WGS_SCAFLD  NZ_JADAML010000001-NZ_JADAML010000141
//
LOCUS       NZ_AHJS01000000      2694762 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.46, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJS00000000
VERSION     NZ_AHJS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471810
            Assembly: GCF_000245255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.46
  ORGANISM  Saccharolobus islandicus M.16.46
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2694762)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2694762)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJS00000000.1.
            The Saccharolobus islandicus M.16.46 whole genome shotgun (WGS)
            project has the project accession NZ_AHJS00000000.  This version of
            the project (01) has the accession number NZ_AHJS01000000, and
            consists of sequences AHJS01000001-AHJS01000002.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M1627
            (Accession: NC_012632.1).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: GS De Novo Assembler v. 2.0.00; Consed v.
                                     19
            Genome Coverage       :: 17.1x
            Sequencing Technology :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245255.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:05:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,978
            CDSs (total)                      :: 2,926
            Genes (coding)                    :: 2,598
            CDSs (with protein)               :: 2,598
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 328
            CDSs (without protein)            :: 328
            Pseudo Genes (ambiguous residues) :: 0 of 328
            Pseudo Genes (frameshifted)       :: 265 of 328
            Pseudo Genes (incomplete)         :: 93 of 328
            Pseudo Genes (internal stop)      :: 38 of 328
            Pseudo Genes (multiple problems)  :: 60 of 328
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2694762
                     /organism="Saccharolobus islandicus M.16.46"
                     /mol_type="genomic DNA"
                     /strain="M.16.46"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132505"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJS01000001-AHJS01000002
WGS_SCAFLD  NZ_AHJS01000001-NZ_AHJS01000002
//
LOCUS       NZ_AHJQ01000000      2664783 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.40, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJQ00000000
VERSION     NZ_AHJQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471808
            Assembly: GCF_000245215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.40
  ORGANISM  Saccharolobus islandicus M.16.40
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2664783)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2664783)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJQ00000000.1.
            The Saccharolobus islandicus M.16.40 whole genome shotgun (WGS)
            project has the project accession NZ_AHJQ00000000.  This version of
            the project (01) has the accession number NZ_AHJQ01000000, and
            consists of sequence AHJQ01000001.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M164
            (Accession: NC_012726.1).
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: GS De Novo Assembler v. 2.0.00; Consed
                                        v. 19
            Genome Coverage          :: 35.4x
            Sequencing Technology    :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245215.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:02:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,973
            CDSs (total)                      :: 2,921
            Genes (coding)                    :: 2,643
            CDSs (with protein)               :: 2,643
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 278
            CDSs (without protein)            :: 278
            Pseudo Genes (ambiguous residues) :: 0 of 278
            Pseudo Genes (frameshifted)       :: 221 of 278
            Pseudo Genes (incomplete)         :: 80 of 278
            Pseudo Genes (internal stop)      :: 26 of 278
            Pseudo Genes (multiple problems)  :: 44 of 278
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2664783
                     /organism="Saccharolobus islandicus M.16.40"
                     /mol_type="genomic DNA"
                     /strain="M.16.40"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132503"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJQ01000001
WGS_SCAFLD  NZ_AHJQ01000001
//
LOCUS       NZ_AHJN01000000      2680985 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.22, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJN00000000
VERSION     NZ_AHJN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471818
            Assembly: GCF_000245155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.22
  ORGANISM  Saccharolobus islandicus M.16.22
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2680985)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2680985)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJN00000000.1.
            The Saccharolobus islandicus M.16.22 whole genome shotgun (WGS)
            project has the project accession NZ_AHJN00000000.  This version of
            the project (01) has the accession number NZ_AHJN01000000, and
            consists of sequences AHJN01000001-AHJN01000003.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M1627
            (Accession: NC_012632.1).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: GS De Novo Assembler v. 2.0.00; Consed v.
                                     19
            Genome Coverage       :: 51.2x
            Sequencing Technology :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245155.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:04:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,005
            CDSs (total)                      :: 2,953
            Genes (coding)                    :: 2,611
            CDSs (with protein)               :: 2,611
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 342
            CDSs (without protein)            :: 342
            Pseudo Genes (ambiguous residues) :: 0 of 342
            Pseudo Genes (frameshifted)       :: 241 of 342
            Pseudo Genes (incomplete)         :: 131 of 342
            Pseudo Genes (internal stop)      :: 48 of 342
            Pseudo Genes (multiple problems)  :: 69 of 342
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680985
                     /organism="Saccharolobus islandicus M.16.22"
                     /mol_type="genomic DNA"
                     /strain="M.16.22"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132500"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJN01000001-AHJN01000003
WGS_SCAFLD  NZ_AHJN01000001-NZ_AHJN01000003
//
LOCUS       NZ_AHJT01000000      2637559 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.47, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJT00000000
VERSION     NZ_AHJT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471811
            Assembly: GCF_000245275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.47
  ORGANISM  Saccharolobus islandicus M.16.47
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2637559)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2637559)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJT00000000.1.
            The Saccharolobus islandicus M.16.47 whole genome shotgun (WGS)
            project has the project accession NZ_AHJT00000000.  This version of
            the project (01) has the accession number NZ_AHJT01000000, and
            consists of sequence AHJT01000001.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M1627
            (Accession: NC_012632.1).
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: GS De Novo Assembler v. 2.0.00; Consed
                                        v. 19
            Genome Coverage          :: 48.5x
            Sequencing Technology    :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245275.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:03:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,930
            CDSs (total)                      :: 2,879
            Genes (coding)                    :: 2,567
            CDSs (with protein)               :: 2,567
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 312
            CDSs (without protein)            :: 312
            Pseudo Genes (ambiguous residues) :: 0 of 312
            Pseudo Genes (frameshifted)       :: 245 of 312
            Pseudo Genes (incomplete)         :: 91 of 312
            Pseudo Genes (internal stop)      :: 37 of 312
            Pseudo Genes (multiple problems)  :: 54 of 312
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637559
                     /organism="Saccharolobus islandicus M.16.47"
                     /mol_type="genomic DNA"
                     /strain="M.16.47"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132506"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJT01000001
WGS_SCAFLD  NZ_AHJT01000001
//
LOCUS       NZ_AHJP01000000      2608312 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.30, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJP00000000
VERSION     NZ_AHJP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471824
            Assembly: GCF_000245195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.30
  ORGANISM  Saccharolobus islandicus M.16.30
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2608312)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2608312)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJP00000000.1.
            The Saccharolobus islandicus M.16.30 whole genome shotgun (WGS)
            project has the project accession NZ_AHJP00000000.  This version of
            the project (01) has the accession number NZ_AHJP01000000, and
            consists of sequences AHJP01000001-AHJP01000004.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M1627
            (Accession: NC_012632.1).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: GS De Novo Assembler v. 2.0.00; Consed v.
                                     19
            Genome Coverage       :: 18.9x
            Sequencing Technology :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245195.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:02:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,899
            CDSs (total)                      :: 2,848
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 244
            CDSs (without protein)            :: 244
            Pseudo Genes (ambiguous residues) :: 0 of 244
            Pseudo Genes (frameshifted)       :: 181 of 244
            Pseudo Genes (incomplete)         :: 90 of 244
            Pseudo Genes (internal stop)      :: 33 of 244
            Pseudo Genes (multiple problems)  :: 52 of 244
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608312
                     /organism="Saccharolobus islandicus M.16.30"
                     /mol_type="genomic DNA"
                     /strain="M.16.30"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132502"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJP01000001-AHJP01000004
WGS_SCAFLD  NZ_AHJP01000001-NZ_AHJP01000004
//
LOCUS       NZ_AHJO01000000      2601131 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.23, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJO00000000
VERSION     NZ_AHJO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471819
            Assembly: GCF_000245175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.23
  ORGANISM  Saccharolobus islandicus M.16.23
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2601131)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2601131)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJO00000000.1.
            The Saccharolobus islandicus M.16.23 whole genome shotgun (WGS)
            project has the project accession NZ_AHJO00000000.  This version of
            the project (01) has the accession number NZ_AHJO01000000, and
            consists of sequence AHJO01000001.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M1627
            (Accession: NC_012632.1).
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: GS De Novo Assembler v. 2.0.00; Consed
                                        v. 19
            Genome Coverage          :: 38.7x
            Sequencing Technology    :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245175.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:09:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,885
            CDSs (total)                      :: 2,834
            Genes (coding)                    :: 2,603
            CDSs (with protein)               :: 2,603
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 231
            CDSs (without protein)            :: 231
            Pseudo Genes (ambiguous residues) :: 0 of 231
            Pseudo Genes (frameshifted)       :: 169 of 231
            Pseudo Genes (incomplete)         :: 89 of 231
            Pseudo Genes (internal stop)      :: 32 of 231
            Pseudo Genes (multiple problems)  :: 52 of 231
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601131
                     /organism="Saccharolobus islandicus M.16.23"
                     /mol_type="genomic DNA"
                     /strain="M.16.23"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132501"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJO01000001
WGS_SCAFLD  NZ_AHJO01000001
//
LOCUS       NZ_AHJR01000000      2589840 bp    DNA     linear   BCT 22-DEC-2024
DEFINITION  Saccharolobus islandicus M.16.43, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHJR00000000
VERSION     NZ_AHJR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471809
            Assembly: GCF_000245235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus islandicus M.16.43
  ORGANISM  Saccharolobus islandicus M.16.43
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2589840)
  AUTHORS   Cadillo-Quiroz,H., Didelot,X., Held,N.L., Herrera,A., Darling,A.,
            Reno,M.L., Krause,D.J. and Whitaker,R.J.
  TITLE     Patterns of gene flow define species of thermophilic Archaea
  JOURNAL   PLoS Biol 10 (2), e1001265 (2012)
   PUBMED   22363207
REFERENCE   2  (bases 1 to 2589840)
  AUTHORS   Whitaker,R.J. and Cadillo-Quiroz,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2012) Department of Microbiology, University of
            Illinois, 601 S Goodwin Ave, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJR00000000.1.
            The Saccharolobus islandicus M.16.43 whole genome shotgun (WGS)
            project has the project accession NZ_AHJR00000000.  This version of
            the project (01) has the accession number NZ_AHJR01000000, and
            consists of sequence AHJR01000001.
            Source DNA available from Rachel Whitaker, 601 S Goodwin Ave,
            Urbana, IL 61801.
            Reference-guided assembly based on Sulfolobus islandicus M1627
            (Accession: NC_012632.1).
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: GS De Novo Assembler v. 2.0.00; Consed
                                        v. 19
            Genome Coverage          :: 39.3x
            Sequencing Technology    :: 454 Life Sciences GS-FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000245235.1-RS_2024_12_22
            Annotation Date                   :: 12/22/2024 07:15:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,892
            CDSs (total)                      :: 2,840
            Genes (coding)                    :: 2,612
            CDSs (with protein)               :: 2,612
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 228
            CDSs (without protein)            :: 228
            Pseudo Genes (ambiguous residues) :: 0 of 228
            Pseudo Genes (frameshifted)       :: 167 of 228
            Pseudo Genes (incomplete)         :: 88 of 228
            Pseudo Genes (internal stop)      :: 31 of 228
            Pseudo Genes (multiple problems)  :: 53 of 228
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589840
                     /organism="Saccharolobus islandicus M.16.43"
                     /mol_type="genomic DNA"
                     /strain="M.16.43"
                     /isolation_source="Hot spring in Mutnovsky Volcano"
                     /db_xref="taxon:1132504"
                     /geo_loc_name="Russia: Kamchatka"
                     /collection_date="2000"
WGS         AHJR01000001
WGS_SCAFLD  NZ_AHJR01000001
//
LOCUS       NZ_JAVVGX010000000   2028180 bp    DNA     linear   ENV 29-DEC-2024
DEFINITION  MAG: Saccharolobus sp. isolate RBS.bin.9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAVVGX000000000
VERSION     NZ_JAVVGX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37115009
            Assembly: GCF_032248915.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Saccharolobus sp. (hot springs metagenome)
  ORGANISM  Saccharolobus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2028180)
  AUTHORS   Colman,D.R. and Boyd,E.S.
  TITLE     A Tale of Two Pools: The Dynamic Influence of Subsurface Geological
            Processes on the Assembly and Diversification of Thermophilic
            Microbial Communities in Hydrothermal Systems
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2028180)
  AUTHORS   Colman,D.R. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVVGX000000000.1.
            The Saccharolobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVVGX000000000.  This version of the project
            (01) has the accession number NZ_JAVVGX010000000, and consists of
            sequences JAVVGX010000001-JAVVGX010000128.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 687x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032248915.1-RS_2024_12_29
            Annotation Date                   :: 12/29/2024 05:15:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,234
            CDSs (total)                      :: 2,191
            Genes (coding)                    :: 2,131
            CDSs (with protein)               :: 2,131
            Genes (RNA)                       :: 43
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 17 of 60
            Pseudo Genes (incomplete)         :: 53 of 60
            Pseudo Genes (internal stop)      :: 2 of 60
            Pseudo Genes (multiple problems)  :: 11 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028180
                     /organism="Saccharolobus sp."
                     /mol_type="genomic DNA"
                     /isolate="RBS.bin.9"
                     /isolation_source="Sediment Sample from 'Red Bubbler'
                     Spring"
                     /db_xref="taxon:2100761"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park, 'Red
                     Bubbler' Spring"
                     /lat_lon="44.7265 N 110.709 W"
                     /collection_date="2017"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVVGX010000001-JAVVGX010000128
WGS_SCAFLD  NZ_JAVVGX010000001-NZ_JAVVGX010000128
//
LOCUS       NZ_JAWOBM010000000   2909230 bp    DNA     linear   ENV 06-JAN-2025
DEFINITION  MAG: Halorubrum sp. isolate BLK3-3.bin.143, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWOBM000000000
VERSION     NZ_JAWOBM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37758105
            Assembly: GCF_046498025.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halorubrum sp. (sediment metagenome)
  ORGANISM  Halorubrum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 2909230)
  AUTHORS   Gao,L., Fang,B.-Z. and Li,W.-J.
  TITLE     Microbial Community Assembly and Eco-functional Adaptability in
            Varied Salinity Lakes on the Northern Slope of the Tianshan
            Mountain, Xinjiang
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2909230)
  AUTHORS   Gao,L., Fang,B.-Z. and Li,W.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2023) Xinjiang Institute of Ecology and
            Geography, Xinjiang Institute of Ecology and Geography, Beijing
            South Road, Urumqi, Xinjiang 830002, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWOBM000000000.1.
            The Halorubrum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWOBM000000000.  This version of the project
            (01) has the accession number NZ_JAWOBM010000000, and consists of
            sequences JAWOBM010000001-JAWOBM010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1111x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046498025.1-RS_2025_01_06
            Annotation Date                   :: 01/06/2025 01:21:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,011
            CDSs (total)                      :: 2,957
            Genes (coding)                    :: 2,895
            CDSs (with protein)               :: 2,895
            Genes (RNA)                       :: 54
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 11 of 62
            Pseudo Genes (incomplete)         :: 55 of 62
            Pseudo Genes (internal stop)      :: 1 of 62
            Pseudo Genes (multiple problems)  :: 5 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909230
                     /organism="Halorubrum sp."
                     /mol_type="genomic DNA"
                     /isolate="BLK3-3.bin.143"
                     /isolation_source="saline lake sediment"
                     /db_xref="taxon:1879286"
                     /environmental_sample
                     /geo_loc_name="China: Tianshan Mountain, Xinjiang, Barkol
                     Lake"
                     /lat_lon="43.591667 N 92.719496 E"
                     /collection_date="2022-07-15"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JAWOBM010000001-JAWOBM010000080
WGS_SCAFLD  NZ_JAWOBM010000001-NZ_JAWOBM010000080
//
LOCUS       NZ_JBGUNR010000000   2479998 bp    DNA     linear   ENV 07-JAN-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate ruminal_MAG_205, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBGUNR000000000
VERSION     NZ_JBGUNR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43293487
            Sequence Read Archive: SRR25030080
            Assembly: GCF_046487855.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2479998)
  AUTHORS   Conteville,L.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2024) Biotecnologia Animal, Embrapa Pecuaria
            Sudeste, Rod. Washington Luiz, Km 234, Sao Carlos, SP 13560-970,
            Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGUNR000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBGUNR000000000.  This version of the
            project (01) has the accession number NZ_JBGUNR010000000, and
            consists of sequences JBGUNR010000001-JBGUNR010000125.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046487855.1-RS_2025_01_06
            Annotation Date                   :: 01/06/2025 01:11:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,358
            CDSs (total)                      :: 2,319
            Genes (coding)                    :: 2,291
            CDSs (with protein)               :: 2,291
            Genes (RNA)                       :: 39
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 1 of 28
            Pseudo Genes (incomplete)         :: 28 of 28
            Pseudo Genes (internal stop)      :: 0 of 28
            Pseudo Genes (multiple problems)  :: 1 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2479998
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="ruminal_MAG_205"
                     /isolation_source="Ruminal microbiome of Nelore"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="22.02 S 47.89 W"
                     /collection_date="2024-01-01"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBGUNR010000001-JBGUNR010000125
WGS_SCAFLD  NZ_JBGUNR010000001-NZ_JBGUNR010000125
//
LOCUS       NZ_JAWODL010000000   2912384 bp    DNA     linear   ENV 07-JAN-2025
DEFINITION  MAG: Natronomonas sp. isolate BLK5-2.bin.156, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWODL000000000
VERSION     NZ_JAWODL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37758156
            Assembly: GCF_046483325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronomonas sp. (sediment metagenome)
  ORGANISM  Natronomonas sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2912384)
  AUTHORS   Gao,L., Fang,B.-Z. and Li,W.-J.
  TITLE     Microbial Community Assembly and Eco-functional Adaptability in
            Varied Salinity Lakes on the Northern Slope of the Tianshan
            Mountain, Xinjiang
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2912384)
  AUTHORS   Gao,L., Fang,B.-Z. and Li,W.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2023) Xinjiang Institute of Ecology and
            Geography, Xinjiang Institute of Ecology and Geography, Beijing
            South Road, Urumqi, Xinjiang 830002, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWODL000000000.1.
            The Natronomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWODL000000000.  This version of the project
            (01) has the accession number NZ_JAWODL010000000, and consists of
            sequences JAWODL010000001-JAWODL010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1111x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046483325.1-RS_2025_01_06
            Annotation Date                   :: 01/06/2025 01:11:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,086
            CDSs (total)                      :: 3,041
            Genes (coding)                    :: 2,951
            CDSs (with protein)               :: 2,951
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 30 of 90
            Pseudo Genes (incomplete)         :: 78 of 90
            Pseudo Genes (internal stop)      :: 18 of 90
            Pseudo Genes (multiple problems)  :: 29 of 90
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2912384
                     /organism="Natronomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="BLK5-2.bin.156"
                     /isolation_source="saline lake sediment"
                     /db_xref="taxon:2184060"
                     /environmental_sample
                     /geo_loc_name="China: Tianshan Mountain, Xinjiang, Barkol
                     Lake"
                     /lat_lon="43.591667 N 92.719498 E"
                     /collection_date="2022-07-15"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JAWODL010000001-JAWODL010000056
WGS_SCAFLD  NZ_JAWODL010000001-NZ_JAWODL010000056
//
LOCUS       NZ_JAWDNM010000000   1769792 bp    DNA     linear   ENV 09-JAN-2025
DEFINITION  MAG: Acidianus sp. isolate Moose.S.bin.11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWDNM000000000
VERSION     NZ_JAWDNM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37494459
            Assembly: GCF_046534395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Acidianus sp. (hot springs metagenome)
  ORGANISM  Acidianus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Acidianus.
REFERENCE   1  (bases 1 to 1769792)
  AUTHORS   Colman,D.R., Fernandes-Martins,M.C. and Boyd,E.S.
  TITLE     Geobiological feedbacks and the evolution of thermoacidophiles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1769792)
  AUTHORS   Colman,D.R., Fernandes-Martins,M.C. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWDNM000000000.1.
            The Acidianus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWDNM000000000.  This version of the project
            (01) has the accession number NZ_JAWDNM010000000, and consists of
            sequences JAWDNM010000001-JAWDNM010000116.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046534395.1-RS_2025_01_09
            Annotation Date                   :: 01/09/2025 05:37:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,143
            CDSs (total)                      :: 2,092
            Genes (coding)                    :: 2,025
            CDSs (with protein)               :: 2,025
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 22 of 67
            Pseudo Genes (incomplete)         :: 51 of 67
            Pseudo Genes (internal stop)      :: 7 of 67
            Pseudo Genes (multiple problems)  :: 12 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769792
                     /organism="Acidianus sp."
                     /mol_type="genomic DNA"
                     /isolate="Moose.S.bin.11"
                     /isolation_source="hot spring sediments from shelf"
                     /db_xref="taxon:1872104"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park; Moose
                     Spring"
                     /lat_lon="44.61831 N 110.43552 W"
                     /collection_date="2018"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWDNM010000001-JAWDNM010000116
WGS_SCAFLD  NZ_JAWDNM010000001-NZ_JAWDNM010000116
//
LOCUS       NZ_JAWDKX010000000   1614831 bp    DNA     linear   ENV 09-JAN-2025
DEFINITION  MAG: Acidianus sp. isolate Alice.S.bin.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWDKX000000000
VERSION     NZ_JAWDKX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37494392
            Assembly: GCF_046537415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Acidianus sp. (hot springs metagenome)
  ORGANISM  Acidianus sp.
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Acidianus.
REFERENCE   1  (bases 1 to 1614831)
  AUTHORS   Colman,D.R., Fernandes-Martins,M.C. and Boyd,E.S.
  TITLE     Geobiological feedbacks and the evolution of thermoacidophiles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1614831)
  AUTHORS   Colman,D.R., Fernandes-Martins,M.C. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWDKX000000000.1.
            The Acidianus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWDKX000000000.  This version of the project
            (01) has the accession number NZ_JAWDKX010000000, and consists of
            sequences JAWDKX010000001-JAWDKX010000076.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6.5x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046537415.1-RS_2025_01_09
            Annotation Date                   :: 01/09/2025 05:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,978
            CDSs (total)                      :: 1,931
            Genes (coding)                    :: 1,873
            CDSs (with protein)               :: 1,873
            Genes (RNA)                       :: 47
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 19 of 58
            Pseudo Genes (incomplete)         :: 45 of 58
            Pseudo Genes (internal stop)      :: 4 of 58
            Pseudo Genes (multiple problems)  :: 10 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614831
                     /organism="Acidianus sp."
                     /mol_type="genomic DNA"
                     /isolate="Alice.S.bin.1"
                     /isolation_source="hot spring sediments from shelf"
                     /db_xref="taxon:1872104"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park; Alice
                     Spring"
                     /lat_lon="44.39118 N 110.29506 W"
                     /collection_date="2018"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWDKX010000001-JAWDKX010000076
WGS_SCAFLD  NZ_JAWDKX010000001-NZ_JAWDKX010000076
//
LOCUS       NZ_JAWDMQ010000000   1520121 bp    DNA     linear   ENV 09-JAN-2025
DEFINITION  MAG: Caldisphaera sp. isolate F8S.bin.6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWDMQ000000000
VERSION     NZ_JAWDMQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37494437
            Assembly: GCF_046536515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldisphaera sp. (hot springs metagenome)
  ORGANISM  Caldisphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Acidilobales;
            Caldisphaeraceae; Caldisphaera.
REFERENCE   1  (bases 1 to 1520121)
  AUTHORS   Colman,D.R., Fernandes-Martins,M.C. and Boyd,E.S.
  TITLE     Geobiological feedbacks and the evolution of thermoacidophiles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1520121)
  AUTHORS   Colman,D.R., Fernandes-Martins,M.C. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWDMQ000000000.1.
            The Caldisphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWDMQ000000000.  This version of the project
            (01) has the accession number NZ_JAWDMQ010000000, and consists of
            sequences JAWDMQ010000001-JAWDMQ010000097.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.2x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046536515.1-RS_2025_01_09
            Annotation Date                   :: 01/09/2025 05:57:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,630
            CDSs (total)                      :: 1,578
            Genes (coding)                    :: 1,514
            CDSs (with protein)               :: 1,514
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 25 of 64
            Pseudo Genes (incomplete)         :: 60 of 64
            Pseudo Genes (internal stop)      :: 7 of 64
            Pseudo Genes (multiple problems)  :: 25 of 64
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520121
                     /organism="Caldisphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="F8S.bin.6"
                     /isolation_source="hot spring sediments from shelf"
                     /db_xref="taxon:2060322"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park; F8 Spring"
                     /lat_lon="44.3633 N 110.2619 W"
                     /collection_date="2018"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAWDMQ010000001-JAWDMQ010000097
WGS_SCAFLD  NZ_JAWDMQ010000001-NZ_JAWDMQ010000097
//
LOCUS       NZ_JBKIII010000000   3160221 bp    DNA     linear   BCT 09-JAN-2025
DEFINITION  Haloferax sp. DFSO60, whole genome shotgun sequencing project.
ACCESSION   NZ_JBKIII000000000
VERSION     NZ_JBKIII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45933812
            Assembly: GCF_046557615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. DFSO60
  ORGANISM  Haloferax sp. DFSO60
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3160221)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JAN-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKIII000000000.1.
            The Haloferax sp. DFSO60 whole genome shotgun (WGS) project has the
            project accession NZ_JBKIII000000000.  This version of the project
            (01) has the accession number NZ_JBKIII010000000, and consists of
            sequences JBKIII010000001-JBKIII010000008.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 819.99x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046557615.1-RS_2025_01_09
            Annotation Date                   :: 01/09/2025 08:18:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,317
            CDSs (total)                      :: 3,256
            Genes (coding)                    :: 3,247
            CDSs (with protein)               :: 3,247
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 1 of 9
            Pseudo Genes (incomplete)         :: 8 of 9
            Pseudo Genes (internal stop)      :: 1 of 9
            Pseudo Genes (multiple problems)  :: 1 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160221
                     /organism="Haloferax sp. DFSO60"
                     /mol_type="genomic DNA"
                     /strain="DFSO60"
                     /isolation_source="Dafeng salt soil"
                     /db_xref="taxon:3388652"
                     /geo_loc_name="China"
                     /collection_date="2021-04"
WGS         JBKIII010000001-JBKIII010000008
WGS_SCAFLD  NZ_JBKIII010000001-NZ_JBKIII010000008
//
LOCUS       NZ_JBKGYF010000000   1809548 bp    DNA     linear   ENV 09-JAN-2025
DEFINITION  MAG: Methanohalobium sp. isolate C1M08_23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBKGYF000000000
VERSION     NZ_JBKGYF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35734750
            Sequence Read Archive: SRR21542053
            Assembly: GCF_046546175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanohalobium sp. (hypersaline lake metagenome)
  ORGANISM  Methanohalobium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanohalobium.
REFERENCE   1  (bases 1 to 1809548)
  AUTHORS   Rodriguez-Cruz,U.E., Castelan-Sanchez,H.G., Madrigal-Trejo,D.,
            Eguiarte,L.E. and Souza,V.
  TITLE     Uncovering novel bacterial and archaeal diversity: genomic insights
            from metagenome-assembled genomes in Cuatro Cienegas, Coahuila
  JOURNAL   Front Microbiol 15, 1369263 (2024)
   PUBMED   38873164
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809548)
  AUTHORS   Souza Saldivar,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2024) Departamento de Ecologia Evolutiva,
            Instituto de Ecologia, Circuito exterior sn anexo al Jardin
            Botanico, Mexico, Mexico 04510, Mexico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKGYF000000000.1.
            The Methanohalobium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKGYF000000000.  This version of the project
            (01) has the accession number NZ_JBKGYF010000000, and consists of
            sequences JBKGYF010000001-JBKGYF010000142.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-FEB-2022
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 9.2983x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046546175.1-RS_2025_01_09
            Annotation Date                   :: 01/09/2025 06:23:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,971
            CDSs (total)                      :: 1,928
            Genes (coding)                    :: 1,872
            CDSs (with protein)               :: 1,872
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 11 of 56
            Pseudo Genes (incomplete)         :: 42 of 56
            Pseudo Genes (internal stop)      :: 17 of 56
            Pseudo Genes (multiple problems)  :: 11 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809548
                     /organism="Methanohalobium sp."
                     /mol_type="genomic DNA"
                     /isolate="C1M08_23"
                     /isolation_source="Hypersaline lake, pH fluctuating"
                     /db_xref="taxon:2837493"
                     /environmental_sample
                     /geo_loc_name="Mexico: Coahuila, Cuatro Cienegas"
                     /lat_lon="26.82829356 N 102.02463672 W"
                     /collection_date="2020-09"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JBKGYF010000001-JBKGYF010000142
WGS_SCAFLD  NZ_JBKGYF010000001-NZ_JBKGYF010000142
//
LOCUS       NZ_JAJENP010000000   1771810 bp    DNA     linear   BCT 12-JAN-2025
DEFINITION  Methanimicrococcus blatticola strain PA, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJENP000000000
VERSION     NZ_JAJENP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22513950
            Assembly: GCF_020685265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanimicrococcus blatticola
  ORGANISM  Methanimicrococcus blatticola
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanimicrococcus.
REFERENCE   1  (bases 1 to 1771810)
  AUTHORS   Graham,J.E. and Raman,C.S.
  TITLE     A Breath of Fresh Air: Energy Conservation via Quinol-Dependent
            Oxygen Respiration in a Gut Methanogen
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1771810)
  AUTHORS   Raman,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-OCT-2021) Pharmaceutical Sciences, University of
            Maryland Baltimore, 20 N. Pine St., Baltimore, MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJENP000000000.1.
            The Methanimicrococcus blatticola whole genome shotgun (WGS)
            project has the project accession NZ_JAJENP000000000.  This version
            of the project (01) has the accession number NZ_JAJENP010000000,
            and consists of sequences JAJENP010000001-JAJENP010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 09-SEP-2016
            Assembly Method        :: ABySS v. 1.5.1; SSPACE v. 1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 57.47x
            Sequencing Technology  :: PacBio RS; Illumina HiSeq2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020685265.1-RS_2025_01_12
            Annotation Date                   :: 01/12/2025 03:51:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,668
            CDSs (total)                      :: 1,616
            Genes (coding)                    :: 1,602
            CDSs (with protein)               :: 1,602
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 0 of 14
            Pseudo Genes (incomplete)         :: 8 of 14
            Pseudo Genes (internal stop)      :: 6 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771810
                     /organism="Methanimicrococcus blatticola"
                     /mol_type="genomic DNA"
                     /strain="PA"
                     /isolation_source="hindgut"
                     /host="Periplaneta americana"
                     /type_material="type strain of Methanimicrococcus
                     blatticola"
                     /db_xref="taxon:91560"
                     /geo_loc_name="Netherlands: Amsterdam zoo"
                     /lat_lon="52.3676 N 4.9041 E"
                     /collection_date="1992"
WGS         JAJENP010000001-JAJENP010000006
WGS_SCAFLD  NZ_JAJENP010000001-NZ_JAJENP010000006
//
LOCUS       NZ_JBKEHA010000000   2565492 bp    DNA     linear   ENV 16-JAN-2025
DEFINITION  MAG: Natronomonas sp. isolate 3300053235_6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBKEHA000000000
VERSION     NZ_JBKEHA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44741879
            Sequence Read Archive: SRR28417272
            Assembly: GCF_046710345.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronomonas sp. (seawater metagenome)
  ORGANISM  Natronomonas sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2565492)
  AUTHORS   Boulton,W., Salamov,A., Grigoriev,I.V., Calhoun,S., Labutti,K.,
            Riley,R., Barry,K., Fong,A., Hoppe,C.J.M., Metfies,K., Oetjen,K.,
            Eggers,S.L., Muller,O., Gardner,J., Granskog,M.A., Torstensson,A.,
            Oggier,M., Larsen,A., Bratbak,G., Toseland,A., Leggett,R.M.,
            Moulton,V. and Mock,T.
  TITLE     Metagenome-assembled-genomes recovered from the Arctic drift
            expedition MOSAiC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2565492)
  AUTHORS   Boulton,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2024) School of Computing Sciences, University of
            East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKEHA000000000.1.
            The Natronomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKEHA000000000.  This version of the project
            (01) has the accession number NZ_JBKEHA010000000, and consists of
            sequences JBKEHA010000001-JBKEHA010000248.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 762.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046710345.1-RS_2025_01_16
            Annotation Date                   :: 01/16/2025 05:11:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,915
            CDSs (total)                      :: 2,871
            Genes (coding)                    :: 2,736
            CDSs (with protein)               :: 2,736
            Genes (RNA)                       :: 44
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 25 of 135
            Pseudo Genes (incomplete)         :: 121 of 135
            Pseudo Genes (internal stop)      :: 4 of 135
            Pseudo Genes (multiple problems)  :: 13 of 135
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565492
                     /organism="Natronomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="3300053235_6"
                     /isolation_source="Sediment Traps under Sea-Ice from the
                     Central Arctic Ocean"
                     /db_xref="taxon:2184060"
                     /environmental_sample
                     /geo_loc_name="Arctic Ocean"
                     /lat_lon="81.7085 N 6.7046 E"
                     /collection_date="2020-07-04"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         JBKEHA010000001-JBKEHA010000248
WGS_SCAFLD  NZ_JBKEHA010000001-NZ_JBKEHA010000248
//
LOCUS       NZ_JBKEGK010000000   2548327 bp    DNA     linear   ENV 16-JAN-2025
DEFINITION  MAG: Natronomonas sp. isolate 3300055005_4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBKEGK000000000
VERSION     NZ_JBKEGK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44742066
            Sequence Read Archive: SRR28417301
            Assembly: GCF_046710025.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronomonas sp. (seawater metagenome)
  ORGANISM  Natronomonas sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2548327)
  AUTHORS   Boulton,W., Salamov,A., Grigoriev,I.V., Calhoun,S., Labutti,K.,
            Riley,R., Barry,K., Fong,A., Hoppe,C.J.M., Metfies,K., Oetjen,K.,
            Eggers,S.L., Muller,O., Gardner,J., Granskog,M.A., Torstensson,A.,
            Oggier,M., Larsen,A., Bratbak,G., Toseland,A., Leggett,R.M.,
            Moulton,V. and Mock,T.
  TITLE     Metagenome-assembled-genomes recovered from the Arctic drift
            expedition MOSAiC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2548327)
  AUTHORS   Boulton,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2024) School of Computing Sciences, University of
            East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKEGK000000000.1.
            The Natronomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKEGK000000000.  This version of the project
            (01) has the accession number NZ_JBKEGK010000000, and consists of
            sequences JBKEGK010000001-JBKEGK010000277.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046710025.1-RS_2025_01_16
            Annotation Date                   :: 01/16/2025 05:10:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,742
            CDSs (total)                      :: 2,705
            Genes (coding)                    :: 2,576
            CDSs (with protein)               :: 2,576
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 2 of 129
            Pseudo Genes (incomplete)         :: 128 of 129
            Pseudo Genes (internal stop)      :: 5 of 129
            Pseudo Genes (multiple problems)  :: 6 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548327
                     /organism="Natronomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="3300055005_4"
                     /isolation_source="Sediment Traps under Sea-Ice from the
                     Central Arctic Ocean"
                     /db_xref="taxon:2184060"
                     /environmental_sample
                     /geo_loc_name="Arctic Ocean"
                     /lat_lon="81.7085 N 6.7046 E"
                     /collection_date="2020-07-04"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         JBKEGK010000001-JBKEGK010000277
WGS_SCAFLD  NZ_JBKEGK010000001-NZ_JBKEGK010000277
//
LOCUS       NZ_JABEBY010000000   2794240 bp    DNA     linear   BCT 17-JAN-2025
DEFINITION  Halonotius sp. F2-221B, whole genome shotgun sequencing project.
ACCESSION   NZ_JABEBY000000000
VERSION     NZ_JABEBY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14776583
            Assembly: GCF_046719765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halonotius sp. F2-221B
  ORGANISM  Halonotius sp. F2-221B
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halonotius.
REFERENCE   1  (bases 1 to 2794240)
  AUTHORS   Duran-Viseras,A., Garcia-Roldan,A., Ventosa,A. and Sanchez-Porro,C.
  TITLE     Halonotius pallidirubellus a new haloarchaeum isolate from saline
            water
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2794240)
  AUTHORS   Duran-Viseras,A., Garcia-Roldan,A., Ventosa,A. and Sanchez-Porro,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2020) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABEBY000000000.1.
            The Halonotius sp. F2-221B whole genome shotgun (WGS) project has
            the project accession NZ_JABEBY000000000.  This version of the
            project (01) has the accession number NZ_JABEBY010000000, and
            consists of sequences JABEBY010000001-JABEBY010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 637.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046719765.1-RS_2025_01_16
            Annotation Date                   :: 01/16/2025 12:54:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,988
            CDSs (total)                      :: 2,928
            Genes (coding)                    :: 2,878
            CDSs (with protein)               :: 2,878
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 7 of 50
            Pseudo Genes (incomplete)         :: 47 of 50
            Pseudo Genes (internal stop)      :: 4 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2794240
                     /organism="Halonotius sp. F2-221B"
                     /mol_type="genomic DNA"
                     /strain="F2-221B"
                     /isolation_source="saline water"
                     /db_xref="taxon:2731620"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06"
WGS         JABEBY010000001-JABEBY010000038
WGS_SCAFLD  NZ_JABEBY010000001-NZ_JABEBY010000038
//
LOCUS       NZ_JAHWYM010000000   3976809 bp    DNA     linear   BCT 19-JAN-2025
DEFINITION  Natronomonas gomsonensis strain JCM 17867, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHWYM000000000
VERSION     NZ_JAHWYM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20297773
            Assembly: GCF_026712385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronomonas gomsonensis
  ORGANISM  Natronomonas gomsonensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 3976809)
  AUTHORS   Garcia-Roldan,A., Duran-Viseras,A., De La Haba,R., Sanchez-Porro,C.
            and Ventosa,A.
  TITLE     Natronomonas aquatica a new haloarchaeum isolate from saline water
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3976809)
  AUTHORS   Garcia-Roldan,A., Duran-Viseras,A., De La Haba,R., Sanchez-Porro,C.
            and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUL-2021) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHWYM000000000.1.
            The Natronomonas gomsonensis whole genome shotgun (WGS) project has
            the project accession NZ_JAHWYM000000000.  This version of the
            project (01) has the accession number NZ_JAHWYM010000000, and
            consists of sequences JAHWYM010000001-JAHWYM010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 97.605x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026712385.1-RS_2025_01_19
            Annotation Date                   :: 01/19/2025 06:51:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,243
            CDSs (total)                      :: 4,180
            Genes (coding)                    :: 4,080
            CDSs (with protein)               :: 4,080
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 27 of 100
            Pseudo Genes (incomplete)         :: 78 of 100
            Pseudo Genes (internal stop)      :: 16 of 100
            Pseudo Genes (multiple problems)  :: 17 of 100
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3976809
                     /organism="Natronomonas gomsonensis"
                     /mol_type="genomic DNA"
                     /strain="JCM 17867"
                     /isolation_source="JCM Culture Collection"
                     /type_material="type strain of Natronomonas gomsonensis"
                     /db_xref="taxon:1046043"
                     /geo_loc_name="Japan"
                     /collection_date="2019-02"
WGS         JAHWYM010000001-JAHWYM010000048
WGS_SCAFLD  NZ_JAHWYM010000001-NZ_JAHWYM010000048
//
LOCUS       NZ_JAWQJK010000000   4614368 bp    DNA     linear   ENV 25-JAN-2025
DEFINITION  MAG: Methanosarcina sp. isolate l3m-35, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWQJK000000000
VERSION     NZ_JAWQJK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37670894
            Assembly: GCF_033485115.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosarcina sp. (sediment metagenome)
  ORGANISM  Methanosarcina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4614368)
  AUTHORS   Park,S.-J.
  TITLE     Metagenomic analysis of the green-methane production in the
            anaerobic enrichment culture on lignin as sole source
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4614368)
  AUTHORS   Park,S.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2023) Biology, Jeju National University, 102
            Jejudaehak-ro, Jeju 63243, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWQJK000000000.1.
            The Methanosarcina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWQJK000000000.  This version of the project
            (01) has the accession number NZ_JAWQJK010000000, and consists of
            sequences JAWQJK010000001-JAWQJK010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1349x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_033485115.1-RS_2025_01_25
            Annotation Date                   :: 01/25/2025 03:31:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,891
            CDSs (total)                      :: 3,830
            Genes (coding)                    :: 3,748
            CDSs (with protein)               :: 3,748
            Genes (RNA)                       :: 61
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 30 of 82
            Pseudo Genes (incomplete)         :: 62 of 82
            Pseudo Genes (internal stop)      :: 17 of 82
            Pseudo Genes (multiple problems)  :: 22 of 82
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614368
                     /organism="Methanosarcina sp."
                     /mol_type="genomic DNA"
                     /isolate="l3m-35"
                     /isolation_source="sediment"
                     /db_xref="taxon:2213"
                     /environmental_sample
                     /geo_loc_name="South Korea: Jeju Island"
                     /lat_lon="33.2813 N 126.2313 E"
                     /collection_date="2022"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JAWQJK010000001-JAWQJK010000054
WGS_SCAFLD  NZ_JAWQJK010000001-NZ_JAWQJK010000054
//
LOCUS       NZ_JAWQJL010000000   4550674 bp    DNA     linear   ENV 25-JAN-2025
DEFINITION  MAG: Methanosarcina sp. isolate l5m-25, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWQJL000000000
VERSION     NZ_JAWQJL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37670895
            Assembly: GCF_033485095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosarcina sp. (sediment metagenome)
  ORGANISM  Methanosarcina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4550674)
  AUTHORS   Park,S.-J.
  TITLE     Metagenomic analysis of the green-methane production in the
            anaerobic enrichment culture on lignin as sole source
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4550674)
  AUTHORS   Park,S.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2023) Biology, Jeju National University, 102
            Jejudaehak-ro, Jeju 63243, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWQJL000000000.1.
            The Methanosarcina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWQJL000000000.  This version of the project
            (01) has the accession number NZ_JAWQJL010000000, and consists of
            sequences JAWQJL010000001-JAWQJL010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 133889x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_033485095.1-RS_2025_01_25
            Annotation Date                   :: 01/25/2025 03:32:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,837
            CDSs (total)                      :: 3,776
            Genes (coding)                    :: 3,696
            CDSs (with protein)               :: 3,696
            Genes (RNA)                       :: 61
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 30 of 80
            Pseudo Genes (incomplete)         :: 60 of 80
            Pseudo Genes (internal stop)      :: 17 of 80
            Pseudo Genes (multiple problems)  :: 22 of 80
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4550674
                     /organism="Methanosarcina sp."
                     /mol_type="genomic DNA"
                     /isolate="l5m-25"
                     /isolation_source="sediment"
                     /db_xref="taxon:2213"
                     /environmental_sample
                     /geo_loc_name="South Korea: Jeju Island"
                     /lat_lon="33.2813 N 126.2313 E"
                     /collection_date="2022"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JAWQJL010000001-JAWQJL010000046
WGS_SCAFLD  NZ_JAWQJL010000001-NZ_JAWQJL010000046
//
LOCUS       NZ_JAWQJM010000000   4537451 bp    DNA     linear   ENV 25-JAN-2025
DEFINITION  MAG: Methanosarcina sp. isolate l1m-45, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWQJM000000000
VERSION     NZ_JAWQJM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37670896
            Assembly: GCF_033485125.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosarcina sp. (sediment metagenome)
  ORGANISM  Methanosarcina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4537451)
  AUTHORS   Park,S.-J.
  TITLE     Metagenomic analysis of the green-methane production in the
            anaerobic enrichment culture on lignin as sole source
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4537451)
  AUTHORS   Park,S.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2023) Biology, Jeju National University, 102
            Jejudaehak-ro, Jeju 63243, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWQJM000000000.1.
            The Methanosarcina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAWQJM000000000.  This version of the project
            (01) has the accession number NZ_JAWQJM010000000, and consists of
            sequences JAWQJM010000001-JAWQJM010000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60247x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_033485125.1-RS_2025_01_25
            Annotation Date                   :: 01/25/2025 03:33:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,821
            CDSs (total)                      :: 3,765
            Genes (coding)                    :: 3,682
            CDSs (with protein)               :: 3,682
            Genes (RNA)                       :: 56
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 30 of 83
            Pseudo Genes (incomplete)         :: 63 of 83
            Pseudo Genes (internal stop)      :: 18 of 83
            Pseudo Genes (multiple problems)  :: 23 of 83
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4537451
                     /organism="Methanosarcina sp."
                     /mol_type="genomic DNA"
                     /isolate="l1m-45"
                     /isolation_source="sediment"
                     /db_xref="taxon:2213"
                     /environmental_sample
                     /geo_loc_name="South Korea: Jeju Island"
                     /lat_lon="33.2813 N 126.2313 E"
                     /collection_date="2022"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JAWQJM010000001-JAWQJM010000037
WGS_SCAFLD  NZ_JAWQJM010000001-NZ_JAWQJM010000037
//
LOCUS       NZ_JAHTKX010000000   2432692 bp    DNA     linear   BCT 26-JAN-2025
DEFINITION  Halobacterium salinarum strain AS11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHTKX000000000
VERSION     NZ_JAHTKX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20012774
            Assembly: GCF_021504045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2432692)
  AUTHORS   Baati,H.
  TITLE     Genomic analysis of heavy metal resistant Halobacterium salinarum
            isolated from Sfax solar saltern sediment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2432692)
  AUTHORS   Baati,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2021) Biology, National Engineering School in
            Sfax, Research Unit: Coastal and Urban Environments, Sokra, Sfax
            3038, Tunisia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHTKX000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAHTKX000000000.  This version of the
            project (01) has the accession number NZ_JAHTKX010000000, and
            consists of sequences JAHTKX010000001-JAHTKX010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from National Center for
            Agricultural Utilization Research, Crop Bioprotection (Research
            Unit 1815 N) at the University St Peoria, USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JAN-2020
            Assembly Method        :: CLC Genomics Workbench v. 20.0 -
                                      2020-01-01
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 551.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021504045.1-RS_2025_01_26
            Annotation Date                   :: 01/26/2025 02:22:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,623
            CDSs (total)                      :: 2,571
            Genes (coding)                    :: 2,492
            CDSs (with protein)               :: 2,492
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 22 of 79
            Pseudo Genes (incomplete)         :: 68 of 79
            Pseudo Genes (internal stop)      :: 6 of 79
            Pseudo Genes (multiple problems)  :: 15 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432692
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="AS11"
                     /isolation_source="solar saltern sediment"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Tunisia: Sfax"
                     /lat_lon="34.65 N 10.7 E"
                     /collection_date="2017-05"
WGS         JAHTKX010000001-JAHTKX010000048
WGS_SCAFLD  NZ_JAHTKX010000001-NZ_JAHTKX010000048
//
LOCUS       NZ_JAHTKW010000000   2236468 bp    DNA     linear   BCT 26-JAN-2025
DEFINITION  Halobacterium salinarum strain AS8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAHTKW000000000
VERSION     NZ_JAHTKW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20014181
            Assembly: GCF_021504015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2236468)
  AUTHORS   Baati,H.
  TITLE     Genomic analysis of heavy metal resistant Halobacterium salinarum
            isolated from Sfax solar saltern sediment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2236468)
  AUTHORS   Baati,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2021) Biology, National Engineering School in
            Sfax, Research Unit: Coastal and Urban Environments, Sokra, Sfax
            3038, Tunisia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHTKW000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAHTKW000000000.  This version of the
            project (01) has the accession number NZ_JAHTKW010000000, and
            consists of sequences JAHTKW010000001-JAHTKW010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from National Center for
            Agricultural Utilization Research, Crop Bioprotection (Research
            Unit 1815 N) at the University St Peoria, USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JAN-2020
            Assembly Method        :: CLC Genomics Workbench v. 20.0 -
                                      2020-01-01
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 158.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021504015.1-RS_2025_01_26
            Annotation Date                   :: 01/26/2025 02:22:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,434
            CDSs (total)                      :: 2,382
            Genes (coding)                    :: 2,319
            CDSs (with protein)               :: 2,319
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 9 of 63
            Pseudo Genes (incomplete)         :: 60 of 63
            Pseudo Genes (internal stop)      :: 2 of 63
            Pseudo Genes (multiple problems)  :: 8 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236468
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="AS8"
                     /isolation_source="solar saltern sediment"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Tunisia: Sfax"
                     /lat_lon="34.65 N 10.7 E"
                     /collection_date="2017-05"
WGS         JAHTKW010000001-JAHTKW010000078
WGS_SCAFLD  NZ_JAHTKW010000001-NZ_JAHTKW010000078
//
LOCUS       NZ_JAHTKY010000000   2428562 bp    DNA     linear   BCT 26-JAN-2025
DEFINITION  Halobacterium salinarum strain AS19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHTKY000000000
VERSION     NZ_JAHTKY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20012396
            Assembly: GCF_021504035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2428562)
  AUTHORS   Baati,H.
  TITLE     Genomic analysis of heavy metal resistant Halobacterium salinarum
            isolated from Sfax solar saltern sediment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2428562)
  AUTHORS   Baati,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2021) Biology, National Engineering School in
            Sfax, Research Unit: Coastal and Urban Environments, Sokra, Sfax
            3038, Tunisia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHTKY000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAHTKY000000000.  This version of the
            project (01) has the accession number NZ_JAHTKY010000000, and
            consists of sequences JAHTKY010000001-JAHTKY010000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JAN-2020
            Assembly Method        :: CLC Genomics Workbench v. 20.0 -
                                      2020-01-01
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 217.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021504035.1-RS_2025_01_26
            Annotation Date                   :: 01/26/2025 02:23:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,629
            CDSs (total)                      :: 2,577
            Genes (coding)                    :: 2,498
            CDSs (with protein)               :: 2,498
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 22 of 79
            Pseudo Genes (incomplete)         :: 69 of 79
            Pseudo Genes (internal stop)      :: 6 of 79
            Pseudo Genes (multiple problems)  :: 16 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428562
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="AS19"
                     /isolation_source="solar saltern sediment"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Tunisia: Sfax"
                     /lat_lon="34.65 N 10.7 E"
                     /collection_date="2017-05"
WGS         JAHTKY010000001-JAHTKY010000066
WGS_SCAFLD  NZ_JAHTKY010000001-NZ_JAHTKY010000066
//
LOCUS       NZ_JAWMCG010000000   3334058 bp    DNA     linear   BCT 26-JAN-2025
DEFINITION  Halorubrum distributum strain ICIS4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWMCG000000000
VERSION     NZ_JAWMCG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37925445
            Assembly: GCF_033100775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum distributum
  ORGANISM  Halorubrum distributum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum;
            Halorubrum distributum group.
REFERENCE   1  (bases 1 to 3334058)
  AUTHORS   Selivanova,E.A., Balkin,A.S., Khlopko,Y.A., Kataev,V.Y. and
            Plotnikov,A.O.
  TITLE     The Genome of a New Halorubrum distributum Strain ICIS4 Isolated
            from the Culture of a Microalga Dunaliella salina
  JOURNAL   Microbiology (N Y) 93 (4), 482-486 (2024)
  REMARK    DOI: 10.1134/s0026261723604426
REFERENCE   2  (bases 1 to 3334058)
  AUTHORS   Selivanova,E.A., Khlopko,Y.A., Kataev,V.Y., Balkin,A.S. and
            Plotnikov,A.O.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2023) Center of Shared Scientific Equipment
            'Persistence of microorganisms', Institute for Cellular and
            Intracellular Symbiosis UB RAS, Pionerskaya, 11, Orenburg 460000,
            Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWMCG000000000.1.
            The Halorubrum distributum whole genome shotgun (WGS) project has
            the project accession NZ_JAWMCG000000000.  This version of the
            project (01) has the accession number NZ_JAWMCG010000000, and
            consists of sequences JAWMCG010000001-JAWMCG010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 17-APR-2023
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 243.1x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_033100775.1-RS_2025_01_26
            Annotation Date                   :: 01/26/2025 12:39:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,345
            CDSs (total)                      :: 3,283
            Genes (coding)                    :: 3,218
            CDSs (with protein)               :: 3,218
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 14 of 65
            Pseudo Genes (incomplete)         :: 53 of 65
            Pseudo Genes (internal stop)      :: 8 of 65
            Pseudo Genes (multiple problems)  :: 9 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334058
                     /organism="Halorubrum distributum"
                     /mol_type="genomic DNA"
                     /strain="ICIS4"
                     /isolation_source="hypersaline ephemeral pond"
                     /host="Dunaliella salina (microalgae)"
                     /db_xref="taxon:29283"
                     /geo_loc_name="Russia: Volgograd Region, Bolschaya
                     Smorogda estuary"
                     /collection_date="2018-08-21"
WGS         JAWMCG010000001-JAWMCG010000080
WGS_SCAFLD  NZ_JAWMCG010000001-NZ_JAWMCG010000080
//
LOCUS       NZ_RKLS01000000      4067151 bp    DNA     linear   BCT 29-JAN-2025
DEFINITION  Haloarcula salinisoli strain F28, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RKLS00000000
VERSION     NZ_RKLS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10397876
            Assembly: GCF_019599485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula salinisoli
  ORGANISM  Haloarcula salinisoli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4067151)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halomicroarcula sp. a new haloarchaeum isolated from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4067151)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2021) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKLS00000000.1.
            The Haloarcula salinisoli whole genome shotgun (WGS) project has
            the project accession NZ_RKLS00000000.  This version of the project
            (01) has the accession number NZ_RKLS01000000, and consists of
            sequences RKLS01000001-RKLS01000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 323.837x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019599485.1-RS_2025_01_29
            Annotation Date                   :: 01/29/2025 02:33:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,236
            CDSs (total)                      :: 4,185
            Genes (coding)                    :: 4,134
            CDSs (with protein)               :: 4,134
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 2 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 14 of 51
            Pseudo Genes (incomplete)         :: 39 of 51
            Pseudo Genes (internal stop)      :: 8 of 51
            Pseudo Genes (multiple problems)  :: 8 of 51
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067151
                     /organism="Haloarcula salinisoli"
                     /mol_type="genomic DNA"
                     /strain="F28"
                     /isolation_source="saline soil"
                     /db_xref="taxon:2487746"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2014-09"
WGS         RKLS01000001-RKLS01000012
WGS_SCAFLD  NZ_RKLS01000001-NZ_RKLS01000012
//
LOCUS       NZ_JAXJAF010000000   1596750 bp    DNA     linear   ENV 31-JAN-2025
DEFINITION  MAG: Methanosphaera stadtmanae isolate DOME_MAG_10618, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXJAF000000000
VERSION     NZ_JAXJAF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38021098
            Assembly: GCF_036303625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera stadtmanae (human gut metagenome)
  ORGANISM  Methanosphaera stadtmanae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1596750)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Interconnectedness of farmer and livestock microbiomes and
            resistomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1596750)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2023) The Edison Family Center for Genome
            Sciences & Systems Biology, Washington University School of
            Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXJAF000000000.1.
            The Methanosphaera stadtmanae whole genome shotgun (WGS) project
            has the project accession NZ_JAXJAF000000000.  This version of the
            project (01) has the accession number NZ_JAXJAF010000000, and
            consists of sequences JAXJAF010000001-JAXJAF010000262.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036303625.1-RS_2025_01_31
            Annotation Date                   :: 01/31/2025 05:26:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,528
            CDSs (total)                      :: 1,497
            Genes (coding)                    :: 1,468
            CDSs (with protein)               :: 1,468
            Genes (RNA)                       :: 31
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 28
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 2 of 29
            Pseudo Genes (incomplete)         :: 27 of 29
            Pseudo Genes (internal stop)      :: 0 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596750
                     /organism="Methanosphaera stadtmanae"
                     /mol_type="genomic DNA"
                     /isolate="DOME_MAG_10618"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:2317"
                     /environmental_sample
                     /geo_loc_name="USA: Marshfield, WI"
                     /lat_lon="44.69 N 90.17 W"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         JAXJAF010000001-JAXJAF010000262
WGS_SCAFLD  NZ_JAXJAF010000001-NZ_JAXJAF010000262
//
LOCUS       NZ_BMON01000000      3774727 bp    DNA     linear   BCT 02-FEB-2025
DEFINITION  Haloarcula argentinensis strain JCM 15759, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMON00000000
VERSION     NZ_BMON00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245258
            Assembly: GCF_014647095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula argentinensis
  ORGANISM  Haloarcula argentinensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3774727)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMON00000000.1.
            The Haloarcula argentinensis whole genome shotgun (WGS) project has
            the project accession NZ_BMON00000000.  This version of the project
            (01) has the accession number NZ_BMON01000000, and consists of
            sequences BMON01000001-BMON01000038.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009006
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 142X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014647095.1-RS_2025_02_02
            Annotation Date                   :: 02/02/2025 10:29:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,896
            CDSs (total)                      :: 3,836
            Genes (coding)                    :: 3,776
            CDSs (with protein)               :: 3,776
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 7, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 7, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 22 of 60
            Pseudo Genes (incomplete)         :: 46 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 15 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774727
                     /organism="Haloarcula argentinensis"
                     /mol_type="genomic DNA"
                     /strain="JCM 15759"
                     /culture_collection="JCM:15759"
                     /type_material="type strain of Haloarcula salaria"
                     /db_xref="taxon:43776"
                     /note="type strain of Haloarcula salaria"
WGS         BMON01000001-BMON01000038
WGS_SCAFLD  NZ_BMON01000001-NZ_BMON01000038
//
LOCUS       NZ_JBBMXV010000000   3596477 bp    DNA     linear   BCT 02-FEB-2025
DEFINITION  Halalkalicoccus tibetensis strain CGMCC 1.3240, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBBMXV000000000
VERSION     NZ_JBBMXV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40704560
            Assembly: GCF_037996645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus tibetensis
  ORGANISM  Halalkalicoccus tibetensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 3596477)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-APR-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBMXV000000000.1.
            The Halalkalicoccus tibetensis whole genome shotgun (WGS) project
            has the project accession NZ_JBBMXV000000000.  This version of the
            project (01) has the accession number NZ_JBBMXV010000000, and
            consists of sequences JBBMXV010000001-JBBMXV010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 89.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037996645.1-RS_2025_02_02
            Annotation Date                   :: 02/02/2025 10:36:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,819
            CDSs (total)                      :: 3,767
            Genes (coding)                    :: 3,710
            CDSs (with protein)               :: 3,710
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 17 of 57
            Pseudo Genes (incomplete)         :: 47 of 57
            Pseudo Genes (internal stop)      :: 6 of 57
            Pseudo Genes (multiple problems)  :: 11 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3596477
                     /organism="Halalkalicoccus tibetensis"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.3240"
                     /isolation_source="sediment"
                     /type_material="type strain of Halalkalicoccus tibetensis"
                     /db_xref="taxon:175632"
                     /geo_loc_name="China: Tibet"
                     /collection_date="2001-10"
WGS         JBBMXV010000001-JBBMXV010000015
WGS_SCAFLD  NZ_JBBMXV010000001-NZ_JBBMXV010000015
//
LOCUS       NZ_JAXFXS010000000   1585835 bp    DNA     linear   ENV 06-FEB-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate SUG2195, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXFXS000000000
VERSION     NZ_JAXFXS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37949893
            Assembly: GCF_034091585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (milk metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1585835)
  AUTHORS   Holman,D.B., Kommadath,A. and Gzyl,K.E.
  TITLE     MAGs from fecal, vaginal, and milk samples from sows and piglets
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1585835)
  AUTHORS   Holman,D.B., Kommadath,A. and Gzyl,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXFXS000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAXFXS000000000.  This version of the
            project (01) has the accession number NZ_JAXFXS010000000, and
            consists of sequences JAXFXS010000001-JAXFXS010000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.466942x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034091585.1-RS_2025_02_06
            Annotation Date                   :: 02/06/2025 04:06:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,762
            CDSs (total)                      :: 1,722
            Genes (coding)                    :: 1,695
            CDSs (with protein)               :: 1,695
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 3 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 0 of 27
            Pseudo Genes (incomplete)         :: 26 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585835
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SUG2195"
                     /isolation_source="Sow milk"
                     /host="swine"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /collection_date="2020"
                     /metagenome_source="milk metagenome"
                     /metagenomic
WGS         JAXFXS010000001-JAXFXS010000068
WGS_SCAFLD  NZ_JAXFXS010000001-NZ_JAXFXS010000068
//
LOCUS       NZ_JAXEHY010000000   1602777 bp    DNA     linear   ENV 07-FEB-2025
DEFINITION  MAG: Methanosphaera sp. isolate SUG2197, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXEHY000000000
VERSION     NZ_JAXEHY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37948807
            Assembly: GCF_034102345.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera sp. (pig gut metagenome)
  ORGANISM  Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1602777)
  AUTHORS   Holman,D.B., Kommadath,A. and Gzyl,K.E.
  TITLE     MAGs from fecal, vaginal, and milk samples from sows and piglets
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1602777)
  AUTHORS   Holman,D.B., Kommadath,A. and Gzyl,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-NOV-2023) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXEHY000000000.1.
            The Methanosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAXEHY000000000.  This version of the project
            (01) has the accession number NZ_JAXEHY010000000, and consists of
            sequences JAXEHY010000001-JAXEHY010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.166265x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034102345.1-RS_2025_02_07
            Annotation Date                   :: 02/07/2025 04:18:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,466
            CDSs (total)                      :: 1,420
            Genes (coding)                    :: 1,412
            CDSs (with protein)               :: 1,412
            Genes (RNA)                       :: 46
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 1 of 8
            Pseudo Genes (incomplete)         :: 7 of 8
            Pseudo Genes (internal stop)      :: 0 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602777
                     /organism="Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="SUG2197"
                     /isolation_source="feces"
                     /host="swine"
                     /db_xref="taxon:2666342"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /collection_date="2020"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JAXEHY010000001-JAXEHY010000010
WGS_SCAFLD  NZ_JAXEHY010000001-NZ_JAXEHY010000010
//
LOCUS       NZ_JBEQWH010000000   1966990 bp    DNA     linear   BCT 08-FEB-2025
DEFINITION  Candidatus Methanoprimaticola sp. MG2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEQWH000000000
VERSION     NZ_JBEQWH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39893023
            Assembly: GCF_047501175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Methanoprimaticola sp. MG2
  ORGANISM  Candidatus Methanoprimaticola sp. MG2
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Methanomassiliicoccales; Methanomethylophilaceae; Candidatus
            Methanoprimaticola.
REFERENCE   1  (bases 1 to 1966990)
  AUTHORS   Volmer,J.G. and Morrison,M.
  TITLE     Different metabolic potential of species within Candidate genus
            Methanoprimaticola
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1966990)
  AUTHORS   Volmer,J.G. and Morrison,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2024) Frazer Institute, University of Queensland,
            37 Kent Street, Brisbane, Qld 4102, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEQWH000000000.1.
            The Candidatus Methanoprimaticola sp. MG2 whole genome shotgun
            (WGS) project has the project accession NZ_JBEQWH000000000.  This
            version of the project (01) has the accession number
            NZ_JBEQWH010000000, and consists of sequences
            JBEQWH010000001-JBEQWH010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 267.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047501175.1-RS_2025_02_07
            Annotation Date                   :: 02/07/2025 12:48:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,922
            CDSs (total)                      :: 1,868
            Genes (coding)                    :: 1,826
            CDSs (with protein)               :: 1,826
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 1 of 42
            Pseudo Genes (incomplete)         :: 37 of 42
            Pseudo Genes (internal stop)      :: 4 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966990
                     /organism="Candidatus Methanoprimaticola sp. MG2"
                     /mol_type="genomic DNA"
                     /strain="MG2"
                     /isolation_source="feces"
                     /host="Petaurus gracilis"
                     /db_xref="taxon:3228838"
                     /geo_loc_name="Australia: Brisbane"
                     /collection_date="2020"
WGS         JBEQWH010000001-JBEQWH010000033
WGS_SCAFLD  NZ_JBEQWH010000001-NZ_JBEQWH010000033
//
LOCUS       NZ_JAPVES010000000   3399778 bp    DNA     linear   BCT 08-FEB-2025
DEFINITION  Methanobacterium veterum strain MK4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPVES000000000
VERSION     NZ_JAPVES000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32126716
            Assembly: GCF_027110455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium veterum
  ORGANISM  Methanobacterium veterum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 3399778)
  AUTHORS   Trubitsyn,V.E., Rivkina,E.M. and Shcherbakova,V.A.
  TITLE     Reclassification of two methanogenic archaea species isolated from
            the Kolyma lowland permafrost
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3399778)
  AUTHORS   Trubitsyn,V.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2022) laboratory of anaerobic microorganisms,
            IBPM RAS, Prospect Nauki, Pushchino, Moscow region 142290, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPVES000000000.1.
            The Methanobacterium veterum whole genome shotgun (WGS) project has
            the project accession NZ_JAPVES000000000.  This version of the
            project (01) has the accession number NZ_JAPVES010000000, and
            consists of sequences JAPVES010000001-JAPVES010000030.
            Bacteria and source DNA available from =VKM B-2440=DSM 19849.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 08-NOV-2022
            Assembly Method        :: ABySS v. 2.3.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 980.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027110455.1-RS_2025_02_08
            Annotation Date                   :: 02/08/2025 03:53:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,369
            CDSs (total)                      :: 3,302
            Genes (coding)                    :: 3,286
            CDSs (with protein)               :: 3,286
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 6, 13 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 6, 13 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 1 of 16
            Pseudo Genes (incomplete)         :: 13 of 16
            Pseudo Genes (internal stop)      :: 2 of 16
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3399778
                     /organism="Methanobacterium veterum"
                     /mol_type="genomic DNA"
                     /strain="MK4"
                     /isolation_source="permafrost sediments"
                     /culture_collection="VKM:B-2440"
                     /type_material="type strain of Methanobacterium veterum"
                     /db_xref="taxon:408577"
                     /geo_loc_name="Russia: Kolyma lowland"
                     /lat_lon="70.1 N 154.067 E"
                     /collection_date="2004"
                     /identified_by="Shcherbakova V. A."
WGS         JAPVES010000001-JAPVES010000030
WGS_SCAFLD  NZ_JAPVES010000001-NZ_JAPVES010000030
//
LOCUS       NZ_JAPVER010000000   3397557 bp    DNA     linear   BCT 08-FEB-2025
DEFINITION  Methanobacterium veterum strain M2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAPVER000000000
VERSION     NZ_JAPVER000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32126715
            Assembly: GCF_027110435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium veterum
  ORGANISM  Methanobacterium veterum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 3397557)
  AUTHORS   Trubitsyn,V.E., Rivkina,E.M. and Shcherbakova,V.A.
  TITLE     Reclassification of two methanogenic archaea species isolated from
            the Kolyma lowland permafrost
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3397557)
  AUTHORS   Trubitsyn,V.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2022) laboratory of anaerobic microorganisms,
            IBPM RAS, Prospect Nauki, Pushchino, Moscow region 142290, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPVER000000000.1.
            The Methanobacterium veterum whole genome shotgun (WGS) project has
            the project accession NZ_JAPVER000000000.  This version of the
            project (01) has the accession number NZ_JAPVER010000000, and
            consists of sequences JAPVER010000001-JAPVER010000020.
            Bacteria and source DNA available from =VKM B-2371=DSM 19844.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 08-NOV-2022
            Assembly Method        :: ABySS v. 2.3.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 278.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027110435.1-RS_2025_02_08
            Annotation Date                   :: 02/08/2025 03:53:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,346
            CDSs (total)                      :: 3,283
            Genes (coding)                    :: 3,270
            CDSs (with protein)               :: 3,270
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 4, 11 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 11 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 2 of 13
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3397557
                     /organism="Methanobacterium veterum"
                     /mol_type="genomic DNA"
                     /strain="M2"
                     /isolation_source="permafrost sediments"
                     /culture_collection="VKM:B-2371"
                     /db_xref="taxon:408577"
                     /geo_loc_name="Russia: Kolyma lowland"
                     /lat_lon="70.1 N 154.067 E"
                     /collection_date="2004"
                     /identified_by="Shcherbakova V. A."
WGS         JAPVER010000001-JAPVER010000020
WGS_SCAFLD  NZ_JAPVER010000001-NZ_JAPVER010000020
//
LOCUS       NZ_JAQOLM010000000   1751819 bp    DNA     linear   BCT 09-FEB-2025
DEFINITION  Methanobrevibacter smithii strain JC9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQOLM000000000
VERSION     NZ_JAQOLM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32745244
            Assembly: GCF_036527415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1751819)
  AUTHORS   Volmer,J.G. and Morrison,M.
  TITLE     Methanobrevibacter smithii isolated from human fecal samples
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1751819)
  AUTHORS   Volmer,J.G. and Morrison,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2023) Diamantina Institute, University of
            Queensland, Kent Street, Brisbane, Queensland 4102, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQOLM000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_JAQOLM000000000.  This version of the
            project (01) has the accession number NZ_JAQOLM010000000, and
            consists of sequences JAQOLM010000001-JAQOLM010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Morrison Lab, University of
            Queensland.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: CLC Genomics Workbench v. 10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 433.759x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036527415.1-RS_2025_02_09
            Annotation Date                   :: 02/09/2025 03:11:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,720
            CDSs (total)                      :: 1,684
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 9 of 28
            Pseudo Genes (incomplete)         :: 20 of 28
            Pseudo Genes (internal stop)      :: 2 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751819
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /strain="JC9"
                     /isolation_source="fecal sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Australia"
                     /collection_date="2016"
WGS         JAQOLM010000001-JAQOLM010000016
WGS_SCAFLD  NZ_JAQOLM010000001-NZ_JAQOLM010000016
//
LOCUS       NZ_JBLGBY010000000   2217316 bp    DNA     linear   ENV 12-FEB-2025
DEFINITION  MAG: Natronomonas sp. isolate 3300055293_22, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBLGBY000000000
VERSION     NZ_JBLGBY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44742100
            Sequence Read Archive: SRR28416929
            Assembly: GCF_047616845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronomonas sp. (seawater metagenome)
  ORGANISM  Natronomonas sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2217316)
  AUTHORS   Boulton,W., Salamov,A., Grigoriev,I.V., Calhoun,S., Labutti,K.,
            Riley,R., Barry,K., Fong,A., Hoppe,C.J.M., Metfies,K., Oetjen,K.,
            Eggers,S.L., Muller,O., Gardner,J., Granskog,M.A., Torstensson,A.,
            Oggier,M., Larsen,A., Bratbak,G., Toseland,A., Leggett,R.M.,
            Moulton,V. and Mock,T.
  TITLE     Metagenome-assembled-genomes recovered from the Arctic drift
            expedition MOSAiC
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2217316)
  AUTHORS   Boulton,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) School of Computing Sciences, University of
            East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLGBY000000000.1.
            The Natronomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBLGBY000000000.  This version of the project
            (01) has the accession number NZ_JBLGBY010000000, and consists of
            sequences JBLGBY010000001-JBLGBY010000094.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 294x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047616845.1-RS_2025_02_12
            Annotation Date                   :: 02/12/2025 04:15:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,473
            CDSs (total)                      :: 2,431
            Genes (coding)                    :: 2,368
            CDSs (with protein)               :: 2,368
            Genes (RNA)                       :: 42
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 10 of 63
            Pseudo Genes (incomplete)         :: 60 of 63
            Pseudo Genes (internal stop)      :: 2 of 63
            Pseudo Genes (multiple problems)  :: 7 of 63
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217316
                     /organism="Natronomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="3300055293_22"
                     /isolation_source="Sediment Traps under Sea-Ice from the
                     Central Arctic Ocean"
                     /db_xref="taxon:2184060"
                     /environmental_sample
                     /geo_loc_name="Arctic Ocean"
                     /lat_lon="81.7085 N 6.7046 E"
                     /collection_date="2020-07-04"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         JBLGBY010000001-JBLGBY010000094
WGS_SCAFLD  NZ_JBLGBY010000001-NZ_JBLGBY010000094
//
LOCUS       NZ_JBLNIH010000000   1917707 bp    DNA     linear   BCT 13-FEB-2025
DEFINITION  Candidatus Nitrososphaera sp. FF02, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLNIH000000000
VERSION     NZ_JBLNIH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46524909
            Assembly: GCF_047711255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrososphaera sp. FF02
  ORGANISM  Candidatus Nitrososphaera sp. FF02
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Nitrososphaera.
REFERENCE   1  (bases 1 to 1917707)
  AUTHORS   Abiola,C. and Rhee,S.-K.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2025) Department of Biological Sciences and
            Biotechnology, Chungbuk National University, Chung Buk National
            University, Chungdae-ro 1, Seowon-gu, Cheongju 28644, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLNIH000000000.1.
            The Candidatus Nitrososphaera sp. FF02 whole genome shotgun (WGS)
            project has the project accession NZ_JBLNIH000000000.  This version
            of the project (01) has the accession number NZ_JBLNIH010000000,
            and consists of sequences JBLNIH010000001-JBLNIH010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-OCT-2024
            Assembly Method        :: flye v. 2.9.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81.45x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047711255.1-RS_2025_02_13
            Annotation Date                   :: 02/13/2025 04:25:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,430
            CDSs (total)                      :: 2,380
            Genes (coding)                    :: 2,303
            CDSs (with protein)               :: 2,303
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 40 of 77
            Pseudo Genes (incomplete)         :: 37 of 77
            Pseudo Genes (internal stop)      :: 0 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917707
                     /organism="Candidatus Nitrososphaera sp. FF02"
                     /mol_type="genomic DNA"
                     /strain="FF02"
                     /isolation_source="agricultural soil"
                     /db_xref="taxon:3398226"
                     /geo_loc_name="South Korea"
WGS         JBLNIH010000001-JBLNIH010000003
WGS_SCAFLD  NZ_JBLNIH010000001-NZ_JBLNIH010000003
//
LOCUS       NZ_JBLNIG010000000   2779974 bp    DNA     linear   BCT 13-FEB-2025
DEFINITION  Candidatus Nitrosocosmicus sp. FF01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBLNIG000000000
VERSION     NZ_JBLNIG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46524661
            Assembly: GCF_047711275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosocosmicus sp. FF01
  ORGANISM  Candidatus Nitrosocosmicus sp. FF01
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Candidatus Nitrosocosmicus.
REFERENCE   1  (bases 1 to 2779974)
  AUTHORS   Abiola,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2025) Department of Biological Sciences and
            Biotechnology, Chungbuk National University, Chung Buk National
            University, Chungdae-ro 1, Seowon-gu, Cheongju 28644, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLNIG000000000.1.
            The Candidatus Nitrosocosmicus sp. FF01 whole genome shotgun (WGS)
            project has the project accession NZ_JBLNIG000000000.  This version
            of the project (01) has the accession number NZ_JBLNIG010000000,
            and consists of sequences JBLNIG010000001-JBLNIG010000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-OCT-2024
            Assembly Method        :: flye v. 2.9.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 119.39x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047711275.1-RS_2025_02_13
            Annotation Date                   :: 02/13/2025 04:24:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,980
            CDSs (total)                      :: 2,930
            Genes (coding)                    :: 2,896
            CDSs (with protein)               :: 2,896
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 11 of 34
            Pseudo Genes (incomplete)         :: 15 of 34
            Pseudo Genes (internal stop)      :: 12 of 34
            Pseudo Genes (multiple problems)  :: 3 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2779974
                     /organism="Candidatus Nitrosocosmicus sp. FF01"
                     /mol_type="genomic DNA"
                     /strain="FF01"
                     /isolation_source="agricultural soil"
                     /db_xref="taxon:3397670"
                     /geo_loc_name="South Korea"
WGS         JBLNIG010000001-JBLNIG010000011
WGS_SCAFLD  NZ_JBLNIG010000001-NZ_JBLNIG010000011
//
LOCUS       NZ_WTZR01000000      1122501 bp    DNA     linear   ENV 13-FEB-2025
DEFINITION  MAG: Candidatus Hikarchaeum yamanae isolate HikBin2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_WTZR00000000
VERSION     NZ_WTZR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13232591
            Assembly: GCF_009889665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Hikarchaeum yamanae (marine metagenome)
  ORGANISM  Candidatus Hikarchaeum yamanae
            Archaea; Methanobacteriati; Methanobacteriota; Candidatus
            Hikarchaeia; Candidatus Hikarchaeales; Candidatus Hikarchaeaceae;
            Candidatus Hikarchaeum.
REFERENCE   1  (bases 1 to 1122501)
  AUTHORS   Martijn,J., Schon,M.E., Lind,A.E., Vosseberg,J., Williams,T.A. and
            Ettema,T.J.G.
  TITLE     Inference of step-wise methanogen-to-halophile transition during
            haloarchaeal evolution using tree-aware ancestral reconstruction
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1122501)
  AUTHORS   Martijn,J., Schon,M.E., Lind,A.E., Vosseberg,J., Williams,T.A. and
            Ettema,T.J.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-NOV-2019) Cell and Molecular Biology, Uppsala
            University, Box 596, Uppsala SE-75 123, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WTZR00000000.1.
            The Candidatus Hikarchaeum yamanae whole genome shotgun (WGS)
            project has the project accession NZ_WTZR00000000.  This version of
            the project (01) has the accession number NZ_WTZR01000000, and
            consists of sequences WTZR01000001-WTZR01000020.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009889665.1-RS_2025_02_13
            Annotation Date                   :: 02/13/2025 12:06:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,209
            CDSs (total)                      :: 1,162
            Genes (coding)                    :: 1,154
            CDSs (with protein)               :: 1,154
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 1 of 8
            Pseudo Genes (incomplete)         :: 7 of 8
            Pseudo Genes (internal stop)      :: 0 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122501
                     /organism="Candidatus Hikarchaeum yamanae"
                     /mol_type="genomic DNA"
                     /isolate="HikBin2"
                     /isolation_source="(MIX) marine epipelagic mixed layer
                     water column"
                     /db_xref="taxon:2675326"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="9.0714 S 140.5973 W"
                     /collection_date="2011-08-05"
                     /metagenome_source="marine metagenome"
                     /metagenomic
WGS         WTZR01000001-WTZR01000020
WGS_SCAFLD  NZ_WTZR01000001-NZ_WTZR01000020
//
LOCUS       NZ_CBCRUN010000000   2352731 bp    DNA     linear   BCT 13-FEB-2025
DEFINITION  Halobacterium salinarum strain CIP104033T isolate CIP104033T, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CBCRUN000000000
VERSION     NZ_CBCRUN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117660315
            Assembly: GCF_965136395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2352731)
  AUTHORS   Palma,F., Chouali,H., Bouchier,C., Chesneau,O., Muhle,E.,
            Clermont,D. and Criscuolo,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2025) CIP, 25-28, rue du Docteur Roux, 75015
            Paris, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCRUN000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_CBCRUN000000000.  This version of the
            project (01) has the accession number NZ_CBCRUN010000000, and
            consists of sequences CBCRUN010000001-CBCRUN010000049.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965136395.1-RS_2025_02_13
            Annotation Date                   :: 02/13/2025 12:07:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,528
            CDSs (total)                      :: 2,475
            Genes (coding)                    :: 2,404
            CDSs (with protein)               :: 2,404
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 17 of 71
            Pseudo Genes (incomplete)         :: 64 of 71
            Pseudo Genes (internal stop)      :: 8 of 71
            Pseudo Genes (multiple problems)  :: 14 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352731
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="CIP104033T"
                     /isolate="CIP104033T"
                     /type_material="type strain of Halobacterium salinarum"
                     /db_xref="taxon:2242"
WGS         CBCRUN010000001-CBCRUN010000049
WGS_SCAFLD  NZ_CBCRUN010000001-NZ_CBCRUN010000049
//
LOCUS       NZ_JAVZFW010000000   1221283 bp    DNA     linear   ENV 16-FEB-2025
DEFINITION  MAG: Candidatus Hadarchaeum sp. isolate DRTY-6_201803_bins_94,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JAVZFW000000000
VERSION     NZ_JAVZFW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037171
            Assembly: GCF_038872675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Hadarchaeum sp. (hot springs metagenome)
  ORGANISM  Candidatus Hadarchaeum sp.
            Archaea; Methanobacteriati; Candidatus Hadarchaeota; Candidatus
            Hadarchaeia; Candidatus Hadarchaeales; Candidatus Hadarchaeaceae;
            Candidatus Hadarchaeum.
REFERENCE   1  (bases 1 to 1221283)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1221283)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZFW000000000.1.
            The Candidatus Hadarchaeum sp. whole genome shotgun (WGS) project
            has the project accession NZ_JAVZFW000000000.  This version of the
            project (01) has the accession number NZ_JAVZFW010000000, and
            consists of sequences JAVZFW010000001-JAVZFW010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 38.7382298550958x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038872675.1-RS_2025_02_16
            Annotation Date                   :: 02/16/2025 12:20:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,413
            CDSs (total)                      :: 1,371
            Genes (coding)                    :: 1,337
            CDSs (with protein)               :: 1,337
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 1 of 34
            Pseudo Genes (incomplete)         :: 33 of 34
            Pseudo Genes (internal stop)      :: 1 of 34
            Pseudo Genes (multiple problems)  :: 1 of 34
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1221283
                     /organism="Candidatus Hadarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201803_bins_94"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2883567"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2018-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZFW010000001-JAVZFW010000074
WGS_SCAFLD  NZ_JAVZFW010000001-NZ_JAVZFW010000074
//
LOCUS       NZ_JAVZIN010000000   1205095 bp    DNA     linear   ENV 16-FEB-2025
DEFINITION  MAG: Candidatus Hadarchaeum sp. isolate DRTY-6_201901_bins_47,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JAVZIN000000000
VERSION     NZ_JAVZIN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037240
            Assembly: GCF_038871235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Hadarchaeum sp. (hot springs metagenome)
  ORGANISM  Candidatus Hadarchaeum sp.
            Archaea; Methanobacteriati; Candidatus Hadarchaeota; Candidatus
            Hadarchaeia; Candidatus Hadarchaeales; Candidatus Hadarchaeaceae;
            Candidatus Hadarchaeum.
REFERENCE   1  (bases 1 to 1205095)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1205095)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZIN000000000.1.
            The Candidatus Hadarchaeum sp. whole genome shotgun (WGS) project
            has the project accession NZ_JAVZIN000000000.  This version of the
            project (01) has the accession number NZ_JAVZIN010000000, and
            consists of sequences JAVZIN010000001-JAVZIN010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34.91614862951187x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038871235.1-RS_2025_02_16
            Annotation Date                   :: 02/16/2025 12:22:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,350
            CDSs (total)                      :: 1,305
            Genes (coding)                    :: 1,289
            CDSs (with protein)               :: 1,289
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 1 of 16
            Pseudo Genes (incomplete)         :: 15 of 16
            Pseudo Genes (internal stop)      :: 0 of 16
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1205095
                     /organism="Candidatus Hadarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201901_bins_47"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2883567"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-01"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZIN010000001-JAVZIN010000016
WGS_SCAFLD  NZ_JAVZIN010000001-NZ_JAVZIN010000016
//
LOCUS       NZ_JAVZKV010000000   1900682 bp    DNA     linear   ENV 16-FEB-2025
DEFINITION  MAG: Candidatus Hadarchaeum sp. isolate DRTY-6_201907_bins_27,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JAVZKV000000000
VERSION     NZ_JAVZKV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36037300
            Assembly: GCF_038884095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Hadarchaeum sp. (hot springs metagenome)
  ORGANISM  Candidatus Hadarchaeum sp.
            Archaea; Methanobacteriati; Candidatus Hadarchaeota; Candidatus
            Hadarchaeia; Candidatus Hadarchaeales; Candidatus Hadarchaeaceae;
            Candidatus Hadarchaeum.
REFERENCE   1  (bases 1 to 1900682)
  AUTHORS   Qi,Y.L., Chen,Y.T., Xie,Y.G., Li,Y.X., Rao,Y.Z., Li,M.M., Xie,Q.J.,
            Cao,X.R., Chen,L., Qu,Y.N., Yuan,Z.X., Xiao,Z.C., Lu,L., Jiao,J.Y.,
            Shu,W.S., Li,W.J., Hedlund,B.P. and Hua,Z.S.
  TITLE     Analysis of nearly 3000 archaeal genomes from terrestrial
            geothermal springs sheds light on interconnected biogeochemical
            processes
  JOURNAL   Nat Commun 15 (1), 4066 (2024)
   PUBMED   38744885
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1900682)
  AUTHORS   Qi,Y.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2023) School of Life Sciences, Sun Yat-sen
            University, No. 135, Xingang Xi Road, Guangzhou, Guangdong 510275,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVZKV000000000.1.
            The Candidatus Hadarchaeum sp. whole genome shotgun (WGS) project
            has the project accession NZ_JAVZKV000000000.  This version of the
            project (01) has the accession number NZ_JAVZKV010000000, and
            consists of sequences JAVZKV010000001-JAVZKV010000081.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.48004616438267x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038884095.1-RS_2025_02_16
            Annotation Date                   :: 02/16/2025 12:29:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,088
            CDSs (total)                      :: 2,024
            Genes (coding)                    :: 1,977
            CDSs (with protein)               :: 1,977
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 3, 4 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 10 of 47
            Pseudo Genes (incomplete)         :: 38 of 47
            Pseudo Genes (internal stop)      :: 5 of 47
            Pseudo Genes (multiple problems)  :: 5 of 47
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1900682
                     /organism="Candidatus Hadarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="DRTY-6_201907_bins_27"
                     /isolation_source="Hot spring sediment"
                     /db_xref="taxon:2883567"
                     /environmental_sample
                     /geo_loc_name="China: Tengchong county, Yunnan, DRTY-6
                     pool"
                     /lat_lon="24.95 N 98.44 E"
                     /collection_date="2019-07"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAVZKV010000001-JAVZKV010000081
WGS_SCAFLD  NZ_JAVZKV010000001-NZ_JAVZKV010000081
//
LOCUS       NZ_CBCSUN010000000   1591082 bp    DNA     linear   ENV 17-FEB-2025
DEFINITION  MAG: Methanobrevibacter woesei isolate
            SRR20550292_binner12_Refined_39, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CBCSUN000000000
VERSION     NZ_CBCSUN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117656965
            Sequence Read Archive: SRR20550292
            Assembly: GCF_965143355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter woesei (human gut metagenome)
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1591082)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2025) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCSUN000000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_CBCSUN000000000.  This version of the
            project (01) has the accession number NZ_CBCSUN010000000, and
            consists of sequences CBCSUN010000001-CBCSUN010000012.
            This is a Third Party Annotation (TPA) bin derived from the primary
            whole genome shotgun (WGS) data set SRP387787. This sample
            represents a Metagenome-Assembled Genome (MAG) from the metagenomic
            run SRR20550292.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965143355.1-RS_2025_02_16
            Annotation Date                   :: 02/16/2025 23:59:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,697
            CDSs (total)                      :: 1,659
            Genes (coding)                    :: 1,646
            CDSs (with protein)               :: 1,646
            Genes (RNA)                       :: 38
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 7 of 13
            Pseudo Genes (incomplete)         :: 6 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591082
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /isolate="SRR20550292_binner12_Refined_39"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:190976"
                     /environmental_sample
                     /geo_loc_name="Italy"
                     /collection_date="2015"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CBCSUN010000001-CBCSUN010000012
WGS_SCAFLD  NZ_CBCSUN010000001-NZ_CBCSUN010000012
//
LOCUS       NZ_JBLMKY010000000   4131176 bp    DNA     linear   BCT 17-FEB-2025
DEFINITION  Haloarcula japonica strain SST1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLMKY000000000
VERSION     NZ_JBLMKY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46750376
            Assembly: GCF_047779815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula japonica
  ORGANISM  Haloarcula japonica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4131176)
  AUTHORS   Hakobyan,A., Ghevondyan,D., Margaryan,A., Birkeland,N.-K. and
            Panosyan,H.
  TITLE     Haloarcula japonica strain SST1 isolated from subterranean salt
            deposit in Armenia as a promising EPS producer
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4131176)
  AUTHORS   Hakobyan,A., Ghevondyan,D., Margaryan,A., Birkeland,N.-K. and
            Panosyan,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2025) Biochemistry, Microbiology and
            Biotechnology, Yerevan State University, Alex Manoogian 1, Yerevan,
            Armenia 0025, Armenia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLMKY000000000.1.
            The Haloarcula japonica whole genome shotgun (WGS) project has the
            project accession NZ_JBLMKY000000000.  This version of the project
            (01) has the accession number NZ_JBLMKY010000000, and consists of
            sequences JBLMKY010000001-JBLMKY010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Hovik Panosyan.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 25.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047779815.1-RS_2025_02_16
            Annotation Date                   :: 02/16/2025 12:41:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,221
            CDSs (total)                      :: 4,172
            Genes (coding)                    :: 4,126
            CDSs (with protein)               :: 4,126
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 30 of 46
            Pseudo Genes (incomplete)         :: 29 of 46
            Pseudo Genes (internal stop)      :: 13 of 46
            Pseudo Genes (multiple problems)  :: 21 of 46
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4131176
                     /organism="Haloarcula japonica"
                     /mol_type="genomic DNA"
                     /strain="SST1"
                     /isolation_source="Avan salt deposit"
                     /db_xref="taxon:29282"
                     /geo_loc_name="Armenia: Yerevan"
                     /collection_date="2015-10"
WGS         JBLMKY010000001-JBLMKY010000012
WGS_SCAFLD  NZ_JBLMKY010000001-NZ_JBLMKY010000012
//
LOCUS       NZ_JAXCMI010000000   3449840 bp    DNA     linear   BCT 17-FEB-2025
DEFINITION  Methanospirillum purgamenti strain DSM 3595, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXCMI000000000
VERSION     NZ_JAXCMI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38138900
            Assembly: GCF_033978825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanospirillum purgamenti
  ORGANISM  Methanospirillum purgamenti
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 3449840)
  AUTHORS   Pradel,N., Bartoli,M., Bale,N., Naumann-Schaal,M., Sproer,C.,
            Bunk,B., Rohde,M., Pester,M. and Spring,S.
  TITLE     Description and genome analysis of a novel archaeon isolated from a
            syntrophic pyrite-forming enrichment culture and reclassification
            of Methanospirillum hungatei strains GP1 and SK as
            Methanospirillumpurgamentorum sp. nov
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3449840)
  AUTHORS   Pradel,N., Bartoli,M., Bale,N., Naumann-Schaal,M., Sproer,C.,
            Bunk,B., Rohde,M., Pester,M. and Spring,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2023) Bioinformatics, Leibniz-Institut DSMZ -
            German Collection of Microorganisms and Cell Cultures GmbH,
            Inhoffenstrasse 7B, Braunschweig 38124, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXCMI000000000.1.
            The Methanospirillum purgamenti whole genome shotgun (WGS) project
            has the project accession NZ_JAXCMI000000000.  This version of the
            project (01) has the accession number NZ_JAXCMI010000000, and
            consists of sequences JAXCMI010000001-JAXCMI010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSMZ.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 21-SEP-2023
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_033978825.1-RS_2025_02_17
            Annotation Date                   :: 02/17/2025 04:44:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,346
            CDSs (total)                      :: 3,290
            Genes (coding)                    :: 3,259
            CDSs (with protein)               :: 3,259
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 2 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 8 of 31
            Pseudo Genes (multiple problems)  :: 3 of 31
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449840
                     /organism="Methanospirillum purgamenti"
                     /mol_type="genomic DNA"
                     /strain="DSM 3595"
                     /isolation_source="ditch mud"
                     /culture_collection="DSM:3595"
                     /db_xref="taxon:2834276"
                     /geo_loc_name="Germany: Konstanz"
                     /collection_date="1985"
WGS         JAXCMI010000001-JAXCMI010000072
WGS_SCAFLD  NZ_JAXCMI010000001-NZ_JAXCMI010000072
//
LOCUS       NZ_JBLNNI010000000   2031627 bp    DNA     linear   BCT 18-FEB-2025
DEFINITION  Methanobacterium sp. MZD130B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLNNI000000000
VERSION     NZ_JBLNNI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46324513
            Assembly: GCF_047786645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium sp. MZD130B
  ORGANISM  Methanobacterium sp. MZD130B
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2031627)
  AUTHORS   Chen,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2025) College of Biotechnology and Pharmaceutical
            Engineering, Nanjing Tech University, Pukou Avenue No. 30, Nanjing,
            Jiangsu Province 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLNNI000000000.1.
            The Methanobacterium sp. MZD130B whole genome shotgun (WGS) project
            has the project accession NZ_JBLNNI000000000.  This version of the
            project (01) has the accession number NZ_JBLNNI010000000, and
            consists of sequences JBLNNI010000001-JBLNNI010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 05-JAN-2024
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98.09x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047786645.1-RS_2025_02_17
            Annotation Date                   :: 02/17/2025 13:18:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,041
            CDSs (total)                      :: 1,996
            Genes (coding)                    :: 1,981
            CDSs (with protein)               :: 1,981
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 6 of 15
            Pseudo Genes (incomplete)         :: 12 of 15
            Pseudo Genes (internal stop)      :: 4 of 15
            Pseudo Genes (multiple problems)  :: 5 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031627
                     /organism="Methanobacterium sp. MZD130B"
                     /mol_type="genomic DNA"
                     /strain="MZD130B"
                     /isolation_source="Biogas slurry"
                     /db_xref="taxon:3394378"
                     /geo_loc_name="China: Nanjing, Jiangsu Province"
                     /collection_date="2024-01-05"
WGS         JBLNNI010000001-JBLNNI010000030
WGS_SCAFLD  NZ_JBLNNI010000001-NZ_JBLNNI010000030
//
LOCUS       NZ_JAXQGE010000000   2536449 bp    DNA     linear   ENV 19-FEB-2025
DEFINITION  MAG: Methanobacterium sp. isolate IBPM_KMB_004, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXQGE000000000
VERSION     NZ_JAXQGE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38138823
            Assembly: GCF_034331145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (groundwater metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2536449)
  AUTHORS   Trubitsyn,V.E., Rechkina,V.I., Zakharyuk,A.G. and Shcherbakova,V.A.
  TITLE     Psychrotolerant methanogenic enrichment culture from permafrost
            drilling fluids of Kharasavey gas fields
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2536449)
  AUTHORS   Trubitsyn,V.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-NOV-2023) laboratory of anaerobic microorganisms,
            IBPM RAS, Prospect Nauki, Pushchino 142290, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXQGE000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAXQGE000000000.  This version of the project
            (01) has the accession number NZ_JAXQGE010000000, and consists of
            sequences JAXQGE010000001-JAXQGE010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-JUN-2023
            Assembly Method        :: MetaSPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 40x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034331145.1-RS_2025_02_19
            Annotation Date                   :: 02/19/2025 03:34:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,513
            CDSs (total)                      :: 2,461
            Genes (coding)                    :: 2,449
            CDSs (with protein)               :: 2,449
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 0 of 12
            Pseudo Genes (incomplete)         :: 12 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536449
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="IBPM_KMB_004"
                     /isolation_source="methanogenic enrichment culture from
                     drilling water"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="Russia: Kharasavey gas fields, the western
                     part of the Yamal Peninsula"
                     /lat_lon="71.18472 N 66.8972 E"
                     /collection_date="2021"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JAXQGE010000001-JAXQGE010000009
WGS_SCAFLD  NZ_JAXQGE010000001-NZ_JAXQGE010000009
//
LOCUS       NZ_JAXQGD010000000   4317923 bp    DNA     linear   ENV 19-FEB-2025
DEFINITION  MAG: Methanosarcina sp. isolate VO1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXQGD000000000
VERSION     NZ_JAXQGD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38138822
            Assembly: GCF_034331585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosarcina sp. (groundwater metagenome)
  ORGANISM  Methanosarcina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4317923)
  AUTHORS   Trubitsyn,V.E., Rechkina,V.I., Zakharyuk,A.G. and Shcherbakova,V.A.
  TITLE     Psychrotolerant methanogenic enrichment culture from permafrost
            drilling fluids of Kharasavey gas fields
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4317923)
  AUTHORS   Trubitsyn,V.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-NOV-2023) laboratory of anaerobic microorganisms,
            IBPM RAS, Prospect Nauki, Pushchino 142290, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXQGD000000000.1.
            The Methanosarcina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAXQGD000000000.  This version of the project
            (01) has the accession number NZ_JAXQGD010000000, and consists of
            sequences JAXQGD010000001-JAXQGD010000144.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-JUN-2023
            Assembly Method        :: MetaSPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 382x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034331585.1-RS_2025_02_19
            Annotation Date                   :: 02/19/2025 03:39:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,651
            CDSs (total)                      :: 3,592
            Genes (coding)                    :: 3,525
            CDSs (with protein)               :: 3,525
            Genes (RNA)                       :: 59
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 21 of 67
            Pseudo Genes (incomplete)         :: 43 of 67
            Pseudo Genes (internal stop)      :: 19 of 67
            Pseudo Genes (multiple problems)  :: 14 of 67
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4317923
                     /organism="Methanosarcina sp."
                     /mol_type="genomic DNA"
                     /isolate="VO1"
                     /isolation_source="methanogenic enrichment culture from
                     drilling water"
                     /db_xref="taxon:2213"
                     /environmental_sample
                     /geo_loc_name="Russia: Kharasavey gas fields, the western
                     part of the Yamal Peninsula"
                     /lat_lon="71.18472 N 66.8972 E"
                     /collection_date="2021"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JAXQGD010000001-JAXQGD010000144
WGS_SCAFLD  NZ_JAXQGD010000001-NZ_JAXQGD010000144
//
LOCUS       NZ_JAYFPD010000000   2355021 bp    DNA     linear   ENV 20-FEB-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate CA_10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYFPD000000000
VERSION     NZ_JAYFPD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38932764
            Assembly: GCF_034928265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (groundwater metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2355021)
  AUTHORS   Dang,H., Zhao,W. and Mattes,T.
  TITLE     Metagenomes, Metagenome-Assembled Genomes, and Metatranscriptomes
            from a Chlorinated Ethene-Dechlorinating Culture Amended with
            Biochar Pyrolyzed at Different Temperatures
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2355021)
  AUTHORS   Dang,H. and Mattes,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) Civil and Environmental Engineering,
            University of Iowa, 4258 Seamans Center, Iowa City, IA 52242, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYFPD000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAYFPD000000000.  This version of the
            project (01) has the accession number NZ_JAYFPD010000000, and
            consists of sequences JAYFPD010000001-JAYFPD010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-NOV-2023
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6.020313045646151x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034928265.1-RS_2025_02_20
            Annotation Date                   :: 02/20/2025 03:36:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,031
            CDSs (total)                      :: 1,995
            Genes (coding)                    :: 1,972
            CDSs (with protein)               :: 1,972
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 1 of 23
            Pseudo Genes (incomplete)         :: 21 of 23
            Pseudo Genes (internal stop)      :: 1 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355021
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="CA_10"
                     /isolation_source="anaerobic dechlorinating bioreactor;
                     SDC-9 consortium maintain in serum bottles and exposed to
                     biochar pyrolyzed at different temperatures"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="USA: Iowa City"
                     /lat_lon="41.65 N 91.53 W"
                     /collection_date="2023-05-28"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JAYFPD010000001-JAYFPD010000040
WGS_SCAFLD  NZ_JAYFPD010000001-NZ_JAYFPD010000040
//
LOCUS       NZ_JBLRMD010000000   1923830 bp    DNA     linear   BCT 21-FEB-2025
DEFINITION  Methanotorris formicicus Mc-S-70, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLRMD000000000
VERSION     NZ_JBLRMD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46039424
            Assembly: GCF_047915675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanotorris formicicus Mc-S-70
  ORGANISM  Methanotorris formicicus Mc-S-70
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanocaldococcaceae;
            Methanotorris.
REFERENCE   1  (bases 1 to 1923830)
  AUTHORS   Gillet,P., Fontanay,S., Flandrois,J.-P., Fruchard,R.,
            Brochier-Armanet,C. and Oger,P.
  TITLE     Genome sequencing and assembly of eight Methanococcales strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1923830)
  AUTHORS   Gillet,P., Fontanay,S., Flandrois,J.-P., Fruchard,R.,
            Brochier-Armanet,C. and Oger,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2025) UFR Biosciences, Claude Bernard University
            Lyon 1, Boulevard du 11 Novembre 1918, Villeurbanne F-69622, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLRMD000000000.1.
            The Methanotorris formicicus Mc-S-70 whole genome shotgun (WGS)
            project has the project accession NZ_JBLRMD000000000.  This version
            of the project (01) has the accession number NZ_JBLRMD010000000,
            and consists of sequences JBLRMD010000001-JBLRMD010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSM 16983 / JCM 11930 / ATCC
            BAA-687.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-OCT-2024
            Assembly Method        :: Flye v. 2.9.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 91.0x
            Sequencing Technology  :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047915675.1-RS_2025_02_21
            Annotation Date                   :: 02/21/2025 03:56:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,226
            CDSs (total)                      :: 2,182
            Genes (coding)                    :: 2,138
            CDSs (with protein)               :: 2,138
            Genes (RNA)                       :: 44
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 19 of 44
            Pseudo Genes (incomplete)         :: 28 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 5 of 44
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923830
                     /organism="Methanotorris formicicus Mc-S-70"
                     /mol_type="genomic DNA"
                     /strain="Mc-S-70"
                     /type_material="type strain of Methanotorris formicicus"
                     /db_xref="taxon:647171"
WGS         JBLRMD010000001-JBLRMD010000003
WGS_SCAFLD  NZ_JBLRMD010000001-NZ_JBLRMD010000003
//
LOCUS       NZ_JBLRWX010000000   3856303 bp    DNA     linear   ENV 21-FEB-2025
DEFINITION  MAG: Natronococcus sp. isolate TamC05-22, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBLRWX000000000
VERSION     NZ_JBLRWX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46706394
            Assembly: GCF_047921035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronococcus sp. (volcano metagenome)
  ORGANISM  Natronococcus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
REFERENCE   1  (bases 1 to 3856303)
  AUTHORS   Khomyakova,M.A., Merkel,A.Y. and Slobodkin,A.I.
  TITLE     Liberiplasma polymorphum gen. nov., sp. nov., a novel cell
            wall-less free-living anaerobe, isolated from a terrestrial mud
            volcano, and proposal of Liberiplasmataceae fam. nov. and
            Liberiplasmatales ord. nov
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3856303)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLRWX000000000.1.
            The Natronococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBLRWX000000000.  This version of the project
            (01) has the accession number NZ_JBLRWX010000000, and consists of
            sequences JBLRWX010000001-JBLRWX010000285.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12,1567x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047921035.1-RS_2025_02_21
            Annotation Date                   :: 02/21/2025 04:45:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,144
            CDSs (total)                      :: 4,093
            Genes (coding)                    :: 3,918
            CDSs (with protein)               :: 3,918
            Genes (RNA)                       :: 51
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 19 of 175
            Pseudo Genes (incomplete)         :: 162 of 175
            Pseudo Genes (internal stop)      :: 7 of 175
            Pseudo Genes (multiple problems)  :: 12 of 175
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3856303
                     /organism="Natronococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="TamC05-22"
                     /isolation_source="mud of mud volcano"
                     /db_xref="taxon:35747"
                     /environmental_sample
                     /geo_loc_name="Russia: Taman Peninsula, Gnilaya Gora"
                     /lat_lon="45.249 N 37.4372 E"
                     /collection_date="2022-05"
                     /metagenome_source="volcano metagenome"
                     /metagenomic
WGS         JBLRWX010000001-JBLRWX010000285
WGS_SCAFLD  NZ_JBLRWX010000001-NZ_JBLRWX010000285
//
LOCUS       NZ_JAYFNC010000000   1657343 bp    DNA     linear   ENV 22-FEB-2025
DEFINITION  MAG: Methanocorpusculum sp. isolate 3C_15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYFNC000000000
VERSION     NZ_JAYFNC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38932711
            Assembly: GCF_034933645.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocorpusculum sp. (groundwater metagenome)
  ORGANISM  Methanocorpusculum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanocorpusculum.
REFERENCE   1  (bases 1 to 1657343)
  AUTHORS   Dang,H., Zhao,W. and Mattes,T.
  TITLE     Metagenomes, Metagenome-Assembled Genomes, and Metatranscriptomes
            from a Chlorinated Ethene-Dechlorinating Culture Amended with
            Biochar Pyrolyzed at Different Temperatures
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1657343)
  AUTHORS   Dang,H. and Mattes,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) Civil and Environmental Engineering,
            University of Iowa, 4258 Seamans Center, Iowa City, IA 52242, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYFNC000000000.1.
            The Methanocorpusculum sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAYFNC000000000.  This version of the
            project (01) has the accession number NZ_JAYFNC010000000, and
            consists of sequences JAYFNC010000001-JAYFNC010000021.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-NOV-2023
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 232.44068034146935x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034933645.1-RS_2025_02_22
            Annotation Date                   :: 02/22/2025 03:55:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,735
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,680
            CDSs (with protein)               :: 1,680
            Genes (RNA)                       :: 50
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 3 of 5
            Pseudo Genes (internal stop)      :: 2 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657343
                     /organism="Methanocorpusculum sp."
                     /mol_type="genomic DNA"
                     /isolate="3C_15"
                     /isolation_source="anaerobic dechlorinating bioreactor
                     SDC-9 culture inoculated with groundwater; cells attached
                     to biochar pyrolyzed at 350 celsius - bottle B"
                     /db_xref="taxon:2058474"
                     /environmental_sample
                     /geo_loc_name="USA: Iowa City"
                     /lat_lon="41.65 N 91.53 W"
                     /collection_date="2023-05-15"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JAYFNC010000001-JAYFNC010000021
WGS_SCAFLD  NZ_JAYFNC010000001-NZ_JAYFNC010000021
//
LOCUS       NZ_DAIMMY010000000   2414393 bp    DNA     linear   ENV 22-FEB-2025
DEFINITION  MAG: Methanoculleus bourgensis isolate CTOTU40428, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIMMY000000000
VERSION     NZ_DAIMMY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28745982
            Sequence Read Archive: SRR1562000
            Assembly: GCF_036720475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus bourgensis (soil metagenome)
  ORGANISM  Methanoculleus bourgensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2414393)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2414393)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIMMY000000000.1.
            The Methanoculleus bourgensis whole genome shotgun (WGS) project
            has the project accession NZ_DAIMMY000000000.  This version of the
            project (01) has the accession number NZ_DAIMMY010000000, and
            consists of sequences DAIMMY010000001-DAIMMY010000154.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036720475.1-RS_2025_02_22
            Annotation Date                   :: 02/22/2025 03:58:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,459
            CDSs (total)                      :: 2,409
            Genes (coding)                    :: 2,367
            CDSs (with protein)               :: 2,367
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 0 of 42
            Pseudo Genes (incomplete)         :: 41 of 42
            Pseudo Genes (internal stop)      :: 1 of 42
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414393
                     /organism="Methanoculleus bourgensis"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU40428"
                     /isolation_source="soil"
                     /db_xref="taxon:83986"
                     /environmental_sample
                     /geo_loc_name="China"
                     /collection_date="2013-04-21"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         DAIMMY010000001-DAIMMY010000154
WGS_SCAFLD  NZ_DAIMMY010000001-NZ_DAIMMY010000154
//
LOCUS       NZ_DAINIO010000000   1645121 bp    DNA     linear   ENV 22-FEB-2025
DEFINITION  MAG: Methanococcus maripaludis isolate CTOTU39238, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAINIO000000000
VERSION     NZ_DAINIO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28746591
            Sequence Read Archive: SRR1291431
            Assembly: GCF_036737935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanococcus maripaludis (clay metagenome)
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1645121)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 1645121)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAINIO000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_DAINIO000000000.  This version of the
            project (01) has the accession number NZ_DAINIO010000000, and
            consists of sequences DAINIO010000001-DAINIO010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036737935.1-RS_2025_02_22
            Annotation Date                   :: 02/22/2025 04:09:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,790
            CDSs (total)                      :: 1,750
            Genes (coding)                    :: 1,738
            CDSs (with protein)               :: 1,738
            Genes (RNA)                       :: 40
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 5 of 12
            Pseudo Genes (incomplete)         :: 6 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645121
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU39238"
                     /isolation_source="clay"
                     /db_xref="taxon:39152"
                     /environmental_sample
                     /metagenome_source="clay metagenome"
                     /metagenomic
WGS         DAINIO010000001-DAINIO010000003
WGS_SCAFLD  NZ_DAINIO010000001-NZ_DAINIO010000003
//
LOCUS       NZ_DAIONM010000000   1645177 bp    DNA     linear   ENV 22-FEB-2025
DEFINITION  MAG: Methanococcus maripaludis isolate CTOTU39240, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIONM000000000
VERSION     NZ_DAIONM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28747582
            Sequence Read Archive: SRR1291432
            Assembly: GCF_036755165.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanococcus maripaludis (clay metagenome)
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1645177)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 1645177)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIONM000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_DAIONM000000000.  This version of the
            project (01) has the accession number NZ_DAIONM010000000, and
            consists of sequences DAIONM010000001-DAIONM010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036755165.1-RS_2025_02_22
            Annotation Date                   :: 02/22/2025 04:16:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,793
            CDSs (total)                      :: 1,753
            Genes (coding)                    :: 1,741
            CDSs (with protein)               :: 1,741
            Genes (RNA)                       :: 40
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 5 of 12
            Pseudo Genes (incomplete)         :: 6 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645177
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU39240"
                     /isolation_source="clay"
                     /db_xref="taxon:39152"
                     /environmental_sample
                     /metagenome_source="clay metagenome"
                     /metagenomic
WGS         DAIONM010000001-DAIONM010000002
WGS_SCAFLD  NZ_DAIONM010000001-NZ_DAIONM010000002
//
LOCUS       NZ_DAIPCO010000000   1644723 bp    DNA     linear   ENV 22-FEB-2025
DEFINITION  MAG: Methanococcus maripaludis isolate CTOTU39244, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIPCO000000000
VERSION     NZ_DAIPCO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28747995
            Sequence Read Archive: SRR1291434
            Assembly: GCF_036773865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanococcus maripaludis (clay metagenome)
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1644723)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 1644723)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIPCO000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_DAIPCO000000000.  This version of the
            project (01) has the accession number NZ_DAIPCO010000000, and
            consists of sequences DAIPCO010000001-DAIPCO010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036773865.1-RS_2025_02_22
            Annotation Date                   :: 02/22/2025 04:22:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,792
            CDSs (total)                      :: 1,752
            Genes (coding)                    :: 1,742
            CDSs (with protein)               :: 1,742
            Genes (RNA)                       :: 40
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 3 of 10
            Pseudo Genes (incomplete)         :: 6 of 10
            Pseudo Genes (internal stop)      :: 1 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644723
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU39244"
                     /isolation_source="clay"
                     /db_xref="taxon:39152"
                     /environmental_sample
                     /metagenome_source="clay metagenome"
                     /metagenomic
WGS         DAIPCO010000001-DAIPCO010000002
WGS_SCAFLD  NZ_DAIPCO010000001-NZ_DAIPCO010000002
//
LOCUS       NZ_DAIOPL010000000   2367520 bp    DNA     linear   ENV 22-FEB-2025
DEFINITION  MAG: Pyrobaculum aerophilum isolate CTOTU10770, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIOPL000000000
VERSION     NZ_DAIOPL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28747493
            Sequence Read Archive: SRR3961740
            Assembly: GCF_036754085.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Pyrobaculum aerophilum (water metagenome)
  ORGANISM  Pyrobaculum aerophilum
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2367520)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2367520)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIOPL000000000.1.
            The Pyrobaculum aerophilum whole genome shotgun (WGS) project has
            the project accession NZ_DAIOPL000000000.  This version of the
            project (01) has the accession number NZ_DAIOPL010000000, and
            consists of sequences DAIOPL010000001-DAIOPL010000077.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036754085.1-RS_2025_02_22
            Annotation Date                   :: 02/22/2025 04:26:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,828
            CDSs (total)                      :: 2,779
            Genes (coding)                    :: 2,706
            CDSs (with protein)               :: 2,706
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 19 of 73
            Pseudo Genes (incomplete)         :: 47 of 73
            Pseudo Genes (internal stop)      :: 16 of 73
            Pseudo Genes (multiple problems)  :: 8 of 73
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367520
                     /organism="Pyrobaculum aerophilum"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU10770"
                     /isolation_source="water"
                     /db_xref="taxon:13773"
                     /environmental_sample
                     /geo_loc_name="India"
                     /collection_date="2016-01-26"
                     /metagenome_source="water metagenome"
                     /metagenomic
WGS         DAIOPL010000001-DAIOPL010000077
WGS_SCAFLD  NZ_DAIOPL010000001-NZ_DAIOPL010000077
//
LOCUS       NZ_DAIRMP010000000   1643904 bp    DNA     linear   ENV 24-FEB-2025
DEFINITION  MAG: Methanococcus maripaludis isolate CTOTU39187, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIRMP000000000
VERSION     NZ_DAIRMP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28749791
            Sequence Read Archive: SRR1290773
            Assembly: GCF_036807485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanococcus maripaludis (clay metagenome)
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1643904)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 1643904)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIRMP000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_DAIRMP000000000.  This version of the
            project (01) has the accession number NZ_DAIRMP010000000, and
            consists of sequences DAIRMP010000001-DAIRMP010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036807485.1-RS_2025_02_24
            Annotation Date                   :: 02/24/2025 03:27:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,788
            CDSs (total)                      :: 1,751
            Genes (coding)                    :: 1,741
            CDSs (with protein)               :: 1,741
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 4 of 10
            Pseudo Genes (incomplete)         :: 6 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643904
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU39187"
                     /isolation_source="clay"
                     /db_xref="taxon:39152"
                     /environmental_sample
                     /metagenome_source="clay metagenome"
                     /metagenomic
WGS         DAIRMP010000001-DAIRMP010000003
WGS_SCAFLD  NZ_DAIRMP010000001-NZ_DAIRMP010000003
//
LOCUS       NZ_DAISQW010000000   2120065 bp    DNA     linear   ENV 25-FEB-2025
DEFINITION  MAG: Methanobacterium formicicum isolate CTOTU7630, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAISQW000000000
VERSION     NZ_DAISQW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28750746
            Sequence Read Archive: SRR3330207, SRR3330208, SRR3330209
            Assembly: GCF_036829215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobacterium formicicum (sludge metagenome)
  ORGANISM  Methanobacterium formicicum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2120065)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2120065)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAISQW000000000.1.
            The Methanobacterium formicicum whole genome shotgun (WGS) project
            has the project accession NZ_DAISQW000000000.  This version of the
            project (01) has the accession number NZ_DAISQW010000000, and
            consists of sequences DAISQW010000001-DAISQW010000111.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036829215.1-RS_2025_02_25
            Annotation Date                   :: 02/25/2025 03:23:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,174
            CDSs (total)                      :: 2,131
            Genes (coding)                    :: 2,116
            CDSs (with protein)               :: 2,116
            Genes (RNA)                       :: 43
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 0 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120065
                     /organism="Methanobacterium formicicum"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU7630"
                     /isolation_source="sludge"
                     /db_xref="taxon:2162"
                     /environmental_sample
                     /geo_loc_name="Singapore"
                     /collection_date="2014-10-22"
                     /metagenome_source="sludge metagenome"
                     /metagenomic
WGS         DAISQW010000001-DAISQW010000111
WGS_SCAFLD  NZ_DAISQW010000001-NZ_DAISQW010000111
//
LOCUS       NZ_DAITGN010000000   2224202 bp    DNA     linear   ENV 25-FEB-2025
DEFINITION  MAG: Methanothrix soehngenii isolate CTOTU19887, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAITGN000000000
VERSION     NZ_DAITGN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28751203
            Sequence Read Archive: SRR5007517
            Assembly: GCF_036838265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (sediment metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2224202)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2224202)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAITGN000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAITGN000000000.  This version of the
            project (01) has the accession number NZ_DAITGN010000000, and
            consists of sequences DAITGN010000001-DAITGN010000160.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036838265.1-RS_2025_02_25
            Annotation Date                   :: 02/25/2025 03:47:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,328
            CDSs (total)                      :: 2,284
            Genes (coding)                    :: 2,249
            CDSs (with protein)               :: 2,249
            Genes (RNA)                       :: 44
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 32 of 35
            Pseudo Genes (internal stop)      :: 1 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2224202
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU19887"
                     /isolation_source="sediment"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2015-08-08"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         DAITGN010000001-DAITGN010000160
WGS_SCAFLD  NZ_DAITGN010000001-NZ_DAITGN010000160
//
LOCUS       NZ_DAITXA010000000   2357818 bp    DNA     linear   ENV 25-FEB-2025
DEFINITION  MAG: Methanothrix soehngenii isolate CTOTU1879, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAITXA000000000
VERSION     NZ_DAITXA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28751623
            Sequence Read Archive: SRR2043639
            Assembly: GCF_036840985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (water metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2357818)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2357818)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAITXA000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAITXA000000000.  This version of the
            project (01) has the accession number NZ_DAITXA010000000, and
            consists of sequences DAITXA010000001-DAITXA010000614.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036840985.1-RS_2025_02_25
            Annotation Date                   :: 02/25/2025 03:53:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,679
            CDSs (total)                      :: 2,642
            Genes (coding)                    :: 2,522
            CDSs (with protein)               :: 2,522
            Genes (RNA)                       :: 37
            tRNAs                             :: 37
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 5 of 120
            Pseudo Genes (incomplete)         :: 119 of 120
            Pseudo Genes (internal stop)      :: 0 of 120
            Pseudo Genes (multiple problems)  :: 4 of 120
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357818
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU1879"
                     /isolation_source="water"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /metagenome_source="water metagenome"
                     /metagenomic
WGS         DAITXA010000001-DAITXA010000614
WGS_SCAFLD  NZ_DAITXA010000001-NZ_DAITXA010000614
//
LOCUS       NZ_JBLOPB010000000   3838007 bp    DNA     linear   BCT 01-MAR-2025
DEFINITION  Haloferax sp. DFSO52, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLOPB000000000
VERSION     NZ_JBLOPB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45919040
            Assembly: GCF_048158745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sp. DFSO52
  ORGANISM  Haloferax sp. DFSO52
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3838007)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3838007)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLOPB000000000.1.
            The Haloferax sp. DFSO52 whole genome shotgun (WGS) project has the
            project accession NZ_JBLOPB000000000.  This version of the project
            (01) has the accession number NZ_JBLOPB010000000, and consists of
            sequences JBLOPB010000001-JBLOPB010000008.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 838.65x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048158745.1-RS_2025_02_28
            Annotation Date                   :: 02/28/2025 05:04:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,807
            CDSs (total)                      :: 3,747
            Genes (coding)                    :: 3,730
            CDSs (with protein)               :: 3,730
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 3 of 17
            Pseudo Genes (incomplete)         :: 14 of 17
            Pseudo Genes (internal stop)      :: 3 of 17
            Pseudo Genes (multiple problems)  :: 3 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3838007
                     /organism="Haloferax sp. DFSO52"
                     /mol_type="genomic DNA"
                     /strain="DFSO52"
                     /isolation_source="Dafeng salt soil"
                     /db_xref="taxon:3388505"
                     /geo_loc_name="China"
                     /collection_date="2021-04"
WGS         JBLOPB010000001-JBLOPB010000008
WGS_SCAFLD  NZ_JBLOPB010000001-NZ_JBLOPB010000008
//
LOCUS       NZ_JBHSDS010000000   4462402 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobium salinum strain CGMCC 1.12553, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSDS000000000
VERSION     NZ_JBHSDS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283110
            Assembly: GCF_042651865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobium salinum
  ORGANISM  Halobium salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobium.
REFERENCE   1  (bases 1 to 4462402)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4462402)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSDS000000000.1.
            The Halobium salinum whole genome shotgun (WGS) project has the
            project accession NZ_JBHSDS000000000.  This version of the project
            (01) has the accession number NZ_JBHSDS010000000, and consists of
            sequences JBHSDS010000001-JBHSDS010000017.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 151x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042651865.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 12:57:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,384
            Genes (coding)                    :: 4,336
            CDSs (with protein)               :: 4,336
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 13 of 48
            Pseudo Genes (incomplete)         :: 36 of 48
            Pseudo Genes (internal stop)      :: 10 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4462402
                     /organism="Halobium salinum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12553"
                     /type_material="type strain of Halobium salinum"
                     /db_xref="taxon:1364940"
                     /collection_date="2022"
WGS         JBHSDS010000001-JBHSDS010000017
WGS_SCAFLD  NZ_JBHSDS010000001-NZ_JBHSDS010000017
//
LOCUS       NZ_JBHSQH010000000   4383274 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomarina salina strain CGMCC 1.12543, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSQH000000000
VERSION     NZ_JBHSQH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282726
            Assembly: GCF_042658425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina salina
  ORGANISM  Halomarina salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 4383274)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4383274)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSQH000000000.1.
            The Halomarina salina whole genome shotgun (WGS) project has the
            project accession NZ_JBHSQH000000000.  This version of the project
            (01) has the accession number NZ_JBHSQH010000000, and consists of
            sequences JBHSQH010000001-JBHSQH010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 68x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042658425.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:10:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,415
            CDSs (total)                      :: 4,364
            Genes (coding)                    :: 4,313
            CDSs (with protein)               :: 4,313
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 17 of 51
            Pseudo Genes (incomplete)         :: 34 of 51
            Pseudo Genes (internal stop)      :: 14 of 51
            Pseudo Genes (multiple problems)  :: 11 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4383274
                     /organism="Halomarina salina"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12543"
                     /type_material="type strain of Halomarina salina"
                     /db_xref="taxon:1872699"
                     /collection_date="2022"
WGS         JBHSQH010000001-JBHSQH010000009
WGS_SCAFLD  NZ_JBHSQH010000001-NZ_JBHSQH010000009
//
LOCUS       NZ_JBHSWX010000000   3789890 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobaculum halobium strain SYNS20, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSWX000000000
VERSION     NZ_JBHSWX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283307
            Assembly: GCF_042661885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum halobium
  ORGANISM  Halobaculum halobium
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 3789890)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3789890)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSWX000000000.1.
            The Halobaculum halobium whole genome shotgun (WGS) project has the
            project accession NZ_JBHSWX000000000.  This version of the project
            (01) has the accession number NZ_JBHSWX010000000, and consists of
            sequences JBHSWX010000001-JBHSWX010000017.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 592.37x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661885.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:22:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,997
            CDSs (total)                      :: 3,934
            Genes (coding)                    :: 3,735
            CDSs (with protein)               :: 3,735
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 199
            CDSs (without protein)            :: 199
            Pseudo Genes (ambiguous residues) :: 0 of 199
            Pseudo Genes (frameshifted)       :: 137 of 199
            Pseudo Genes (incomplete)         :: 70 of 199
            Pseudo Genes (internal stop)      :: 4 of 199
            Pseudo Genes (multiple problems)  :: 11 of 199
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3789890
                     /organism="Halobaculum halobium"
                     /mol_type="genomic DNA"
                     /strain="SYNS20"
                     /type_material="type strain of Halobaculum halobium"
                     /db_xref="taxon:3032281"
                     /collection_date="2023"
WGS         JBHSWX010000001-JBHSWX010000017
WGS_SCAFLD  NZ_JBHSWX010000001-NZ_JBHSWX010000017
//
LOCUS       NZ_JBHSZE010000000   4284871 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halalkalicoccus sp. GCM10025704 strain FCH27, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSZE000000000
VERSION     NZ_JBHSZE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283223
            Assembly: GCF_042661825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus sp. GCM10025704
  ORGANISM  Halalkalicoccus sp. GCM10025704
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 4284871)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4284871)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZE000000000.1.
            The Halalkalicoccus sp. GCM10025704 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSZE000000000.  This version
            of the project (01) has the accession number NZ_JBHSZE010000000,
            and consists of sequences JBHSZE010000001-JBHSZE010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 219.03x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661825.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:29:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,803
            CDSs (total)                      :: 4,746
            Genes (coding)                    :: 3,710
            CDSs (with protein)               :: 3,710
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1,036
            CDSs (without protein)            :: 1,036
            Pseudo Genes (ambiguous residues) :: 0 of 1,036
            Pseudo Genes (frameshifted)       :: 865 of 1,036
            Pseudo Genes (incomplete)         :: 232 of 1,036
            Pseudo Genes (internal stop)      :: 21 of 1,036
            Pseudo Genes (multiple problems)  :: 77 of 1,036
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284871
                     /organism="Halalkalicoccus sp. GCM10025704"
                     /mol_type="genomic DNA"
                     /strain="FCH27"
                     /db_xref="taxon:3252662"
                     /collection_date="2022"
WGS         JBHSZE010000001-JBHSZE010000008
WGS_SCAFLD  NZ_JBHSZE010000001-NZ_JBHSZE010000008
//
LOCUS       NZ_JBHSXK010000000   3610203 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomicroarcula sp. GCM10025817 strain SYNS111, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBHSXK000000000
VERSION     NZ_JBHSXK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283285
            Assembly: GCF_042662305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicroarcula sp. GCM10025817
  ORGANISM  Halomicroarcula sp. GCM10025817
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3610203)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3610203)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXK000000000.1.
            The Halomicroarcula sp. GCM10025817 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSXK000000000.  This version
            of the project (01) has the accession number NZ_JBHSXK010000000,
            and consists of sequences JBHSXK010000001-JBHSXK010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662305.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:31:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,782
            CDSs (total)                      :: 3,728
            Genes (coding)                    :: 3,669
            CDSs (with protein)               :: 3,669
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 17 of 59
            Pseudo Genes (incomplete)         :: 55 of 59
            Pseudo Genes (internal stop)      :: 8 of 59
            Pseudo Genes (multiple problems)  :: 15 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3610203
                     /organism="Halomicroarcula sp. GCM10025817"
                     /mol_type="genomic DNA"
                     /strain="SYNS111"
                     /db_xref="taxon:3252672"
                     /collection_date="2022"
WGS         JBHSXK010000001-JBHSXK010000018
WGS_SCAFLD  NZ_JBHSXK010000001-NZ_JBHSXK010000018
//
LOCUS       NZ_JBHSXC010000000   3280627 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomicroarcula sp. GCM10025894 strain SHR3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSXC000000000
VERSION     NZ_JBHSXC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283297
            Assembly: GCF_042661945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicroarcula sp. GCM10025894
  ORGANISM  Halomicroarcula sp. GCM10025894
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3280627)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3280627)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXC000000000.1.
            The Halomicroarcula sp. GCM10025894 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSXC000000000.  This version
            of the project (01) has the accession number NZ_JBHSXC010000000,
            and consists of sequences JBHSXC010000001-JBHSXC010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 456.45x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661945.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:33:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,690
            CDSs (total)                      :: 3,635
            Genes (coding)                    :: 2,867
            CDSs (with protein)               :: 2,867
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 768
            CDSs (without protein)            :: 768
            Pseudo Genes (ambiguous residues) :: 0 of 768
            Pseudo Genes (frameshifted)       :: 640 of 768
            Pseudo Genes (incomplete)         :: 168 of 768
            Pseudo Genes (internal stop)      :: 8 of 768
            Pseudo Genes (multiple problems)  :: 48 of 768
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280627
                     /organism="Halomicroarcula sp. GCM10025894"
                     /mol_type="genomic DNA"
                     /strain="SHR3"
                     /db_xref="taxon:3252673"
                     /collection_date="2022"
WGS         JBHSXC010000001-JBHSXC010000002
WGS_SCAFLD  NZ_JBHSXC010000001-NZ_JBHSXC010000002
//
LOCUS       NZ_JBHSXQ010000000   3596477 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halalkalicoccus tibetensis strain CGMCC 1.3240, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBHSXQ000000000
VERSION     NZ_JBHSXQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283279
            Assembly: GCF_042662025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus tibetensis
  ORGANISM  Halalkalicoccus tibetensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 3596477)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3596477)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXQ000000000.1.
            The Halalkalicoccus tibetensis whole genome shotgun (WGS) project
            has the project accession NZ_JBHSXQ000000000.  This version of the
            project (01) has the accession number NZ_JBHSXQ010000000, and
            consists of sequences JBHSXQ010000001-JBHSXQ010000015.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 89x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662025.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:31:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,819
            CDSs (total)                      :: 3,767
            Genes (coding)                    :: 3,710
            CDSs (with protein)               :: 3,710
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 17 of 57
            Pseudo Genes (incomplete)         :: 47 of 57
            Pseudo Genes (internal stop)      :: 6 of 57
            Pseudo Genes (multiple problems)  :: 11 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3596477
                     /organism="Halalkalicoccus tibetensis"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.3240"
                     /type_material="type strain of Halalkalicoccus tibetensis"
                     /db_xref="taxon:175632"
                     /collection_date="2021"
WGS         JBHSXQ010000001-JBHSXQ010000015
WGS_SCAFLD  NZ_JBHSXQ010000001-NZ_JBHSXQ010000015
//
LOCUS       NZ_JBHSXO010000000   3929322 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobellus sp. GCM10025813 strain DFY28, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSXO000000000
VERSION     NZ_JBHSXO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283281
            Assembly: GCF_042662005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus sp. GCM10025813
  ORGANISM  Halobellus sp. GCM10025813
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3929322)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3929322)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXO000000000.1.
            The Halobellus sp. GCM10025813 whole genome shotgun (WGS) project
            has the project accession NZ_JBHSXO000000000.  This version of the
            project (01) has the accession number NZ_JBHSXO010000000, and
            consists of sequences JBHSXO010000001-JBHSXO010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 145x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662005.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:33:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,878
            CDSs (total)                      :: 3,821
            Genes (coding)                    :: 3,736
            CDSs (with protein)               :: 3,736
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 34 of 85
            Pseudo Genes (incomplete)         :: 66 of 85
            Pseudo Genes (internal stop)      :: 12 of 85
            Pseudo Genes (multiple problems)  :: 22 of 85
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3929322
                     /organism="Halobellus sp. GCM10025813"
                     /mol_type="genomic DNA"
                     /strain="DFY28"
                     /db_xref="taxon:3252665"
                     /collection_date="2022"
WGS         JBHSXO010000001-JBHSXO010000041
WGS_SCAFLD  NZ_JBHSXO010000001-NZ_JBHSXO010000041
//
LOCUS       NZ_JBHSWZ010000000   2551833 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halolamina salina strain CGMCC 1.12285, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSWZ000000000
VERSION     NZ_JBHSWZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283303
            Assembly: GCF_042662265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina salina
  ORGANISM  Halolamina salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2551833)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2551833)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSWZ000000000.1.
            The Halolamina salina whole genome shotgun (WGS) project has the
            project accession NZ_JBHSWZ000000000.  This version of the project
            (01) has the accession number NZ_JBHSWZ010000000, and consists of
            sequences JBHSWZ010000001-JBHSWZ010000718.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662265.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:33:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,142
            CDSs (total)                      :: 3,092
            Genes (coding)                    :: 2,750
            CDSs (with protein)               :: 2,750
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 342
            CDSs (without protein)            :: 342
            Pseudo Genes (ambiguous residues) :: 0 of 342
            Pseudo Genes (frameshifted)       :: 1 of 342
            Pseudo Genes (incomplete)         :: 342 of 342
            Pseudo Genes (internal stop)      :: 1 of 342
            Pseudo Genes (multiple problems)  :: 1 of 342
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551833
                     /organism="Halolamina salina"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12285"
                     /db_xref="taxon:1220023"
                     /collection_date="2022"
WGS         JBHSWZ010000001-JBHSWZ010000718
WGS_SCAFLD  NZ_JBHSWZ010000001-NZ_JBHSWZ010000718
//
LOCUS       NZ_JBHSYN010000000   3352417 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomicroarcula sp. GCM10025743 strain XH51, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSYN000000000
VERSION     NZ_JBHSYN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283245
            Assembly: GCF_042662805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicroarcula sp. GCM10025743
  ORGANISM  Halomicroarcula sp. GCM10025743
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3352417)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3352417)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSYN000000000.1.
            The Halomicroarcula sp. GCM10025743 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSYN000000000.  This version
            of the project (01) has the accession number NZ_JBHSYN010000000,
            and consists of sequences JBHSYN010000001-JBHSYN010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662805.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:36:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,524
            CDSs (total)                      :: 3,467
            Genes (coding)                    :: 3,414
            CDSs (with protein)               :: 3,414
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 4 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 20 of 53
            Pseudo Genes (incomplete)         :: 34 of 53
            Pseudo Genes (internal stop)      :: 8 of 53
            Pseudo Genes (multiple problems)  :: 9 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352417
                     /organism="Halomicroarcula sp. GCM10025743"
                     /mol_type="genomic DNA"
                     /strain="XH51"
                     /db_xref="taxon:3252671"
                     /collection_date="2022"
WGS         JBHSYN010000001-JBHSYN010000019
WGS_SCAFLD  NZ_JBHSYN010000001-NZ_JBHSYN010000019
//
LOCUS       NZ_JBHSXB010000000   3667857 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobaculum halobium strain SYNS20, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSXB000000000
VERSION     NZ_JBHSXB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283298
            Assembly: GCF_042662105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum halobium
  ORGANISM  Halobaculum halobium
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 3667857)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3667857)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXB000000000.1.
            The Halobaculum halobium whole genome shotgun (WGS) project has the
            project accession NZ_JBHSXB000000000.  This version of the project
            (01) has the accession number NZ_JBHSXB010000000, and consists of
            sequences JBHSXB010000001-JBHSXB010000015.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 592.37x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662105.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:36:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,049
            CDSs (total)                      :: 3,989
            Genes (coding)                    :: 3,255
            CDSs (with protein)               :: 3,255
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 734
            CDSs (without protein)            :: 734
            Pseudo Genes (ambiguous residues) :: 0 of 734
            Pseudo Genes (frameshifted)       :: 607 of 734
            Pseudo Genes (incomplete)         :: 156 of 734
            Pseudo Genes (internal stop)      :: 4 of 734
            Pseudo Genes (multiple problems)  :: 32 of 734
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667857
                     /organism="Halobaculum halobium"
                     /mol_type="genomic DNA"
                     /strain="SYNS20"
                     /type_material="type strain of Halobaculum halobium"
                     /db_xref="taxon:3032281"
                     /collection_date="2023"
WGS         JBHSXB010000001-JBHSXB010000015
WGS_SCAFLD  NZ_JBHSXB010000001-NZ_JBHSXB010000015
//
LOCUS       NZ_JBHSXM010000000   3610213 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomarina ordinaria strain PSRA2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSXM000000000
VERSION     NZ_JBHSXM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283283
            Assembly: GCF_042662245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina ordinaria
  ORGANISM  Halomarina ordinaria
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 3610213)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3610213)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXM000000000.1.
            The Halomarina ordinaria whole genome shotgun (WGS) project has the
            project accession NZ_JBHSXM000000000.  This version of the project
            (01) has the accession number NZ_JBHSXM010000000, and consists of
            sequences JBHSXM010000001-JBHSXM010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 364x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662245.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:36:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,762
            CDSs (total)                      :: 3,697
            Genes (coding)                    :: 3,652
            CDSs (with protein)               :: 3,652
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 14 of 45
            Pseudo Genes (incomplete)         :: 35 of 45
            Pseudo Genes (internal stop)      :: 2 of 45
            Pseudo Genes (multiple problems)  :: 5 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3610213
                     /organism="Halomarina ordinaria"
                     /mol_type="genomic DNA"
                     /strain="PSRA2"
                     /type_material="type strain of Halomarina ordinaria"
                     /db_xref="taxon:3033939"
                     /collection_date="2023"
WGS         JBHSXM010000001-JBHSXM010000006
WGS_SCAFLD  NZ_JBHSXM010000001-NZ_JBHSXM010000006
//
LOCUS       NZ_JBHSZC010000000   5333607 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halocatena marina strain QDMS1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSZC000000000
VERSION     NZ_JBHSZC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283225
            Assembly: GCF_042662865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halocatena marina
  ORGANISM  Halocatena marina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halocatena.
REFERENCE   1  (bases 1 to 5333607)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 5333607)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZC000000000.1.
            The Halocatena marina whole genome shotgun (WGS) project has the
            project accession NZ_JBHSZC000000000.  This version of the project
            (01) has the accession number NZ_JBHSZC010000000, and consists of
            sequences JBHSZC010000001-JBHSZC010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 303.87x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662865.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:45:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,613
            CDSs (total)                      :: 5,562
            Genes (coding)                    :: 4,804
            CDSs (with protein)               :: 4,804
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 758
            CDSs (without protein)            :: 758
            Pseudo Genes (ambiguous residues) :: 0 of 758
            Pseudo Genes (frameshifted)       :: 625 of 758
            Pseudo Genes (incomplete)         :: 176 of 758
            Pseudo Genes (internal stop)      :: 35 of 758
            Pseudo Genes (multiple problems)  :: 65 of 758
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5333607
                     /organism="Halocatena marina"
                     /mol_type="genomic DNA"
                     /strain="QDMS1"
                     /db_xref="taxon:2934937"
                     /collection_date="2023"
WGS         JBHSZC010000001-JBHSZC010000010
WGS_SCAFLD  NZ_JBHSZC010000001-NZ_JBHSZC010000010
//
LOCUS       NZ_JBHTAH010000000   3421775 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobaculum lipolyticum strain DT31, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAH000000000
VERSION     NZ_JBHTAH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283191
            Assembly: GCF_042663365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum lipolyticum
  ORGANISM  Halobaculum lipolyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 3421775)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3421775)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAH000000000.1.
            The Halobaculum lipolyticum whole genome shotgun (WGS) project has
            the project accession NZ_JBHTAH000000000.  This version of the
            project (01) has the accession number NZ_JBHTAH010000000, and
            consists of sequences JBHTAH010000001-JBHTAH010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 23x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663365.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:48:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,530
            CDSs (total)                      :: 3,479
            Genes (coding)                    :: 3,453
            CDSs (with protein)               :: 3,453
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 1 of 26
            Pseudo Genes (incomplete)         :: 25 of 26
            Pseudo Genes (internal stop)      :: 1 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421775
                     /organism="Halobaculum lipolyticum"
                     /mol_type="genomic DNA"
                     /strain="DT31"
                     /type_material="type strain of Halobaculum lipolyticum"
                     /db_xref="taxon:3032001"
                     /collection_date="2023"
WGS         JBHTAH010000001-JBHTAH010000033
WGS_SCAFLD  NZ_JBHTAH010000001-NZ_JBHTAH010000033
//
LOCUS       NZ_JBHSZX010000000   4461505 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobium salinum strain YJ-8-S, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSZX000000000
VERSION     NZ_JBHSZX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283202
            Assembly: GCF_042663265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobium salinum
  ORGANISM  Halobium salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobium.
REFERENCE   1  (bases 1 to 4461505)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4461505)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZX000000000.1.
            The Halobium salinum whole genome shotgun (WGS) project has the
            project accession NZ_JBHSZX000000000.  This version of the project
            (01) has the accession number NZ_JBHSZX010000000, and consists of
            sequences JBHSZX010000001-JBHSZX010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 253x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663265.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:49:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,442
            CDSs (total)                      :: 4,381
            Genes (coding)                    :: 4,328
            CDSs (with protein)               :: 4,328
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 5 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 16 of 53
            Pseudo Genes (incomplete)         :: 39 of 53
            Pseudo Genes (internal stop)      :: 10 of 53
            Pseudo Genes (multiple problems)  :: 10 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4461505
                     /organism="Halobium salinum"
                     /mol_type="genomic DNA"
                     /strain="YJ-8-S"
                     /type_material="type strain of Halobium salinum"
                     /db_xref="taxon:1364940"
                     /collection_date="2022"
WGS         JBHSZX010000001-JBHSZX010000014
WGS_SCAFLD  NZ_JBHSZX010000001-NZ_JBHSZX010000014
//
LOCUS       NZ_JBHTAB010000000   3770447 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloferax chudinovii strain DSM 26526, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAB000000000
VERSION     NZ_JBHTAB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283198
            Assembly: GCF_042663345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax chudinovii
  ORGANISM  Haloferax chudinovii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3770447)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3770447)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAB000000000.1.
            The Haloferax chudinovii whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAB000000000.  This version of the project
            (01) has the accession number NZ_JBHTAB010000000, and consists of
            sequences JBHTAB010000001-JBHTAB010000021.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 103x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663345.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:48:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,889
            CDSs (total)                      :: 3,829
            Genes (coding)                    :: 3,726
            CDSs (with protein)               :: 3,726
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 47 of 103
            Pseudo Genes (incomplete)         :: 66 of 103
            Pseudo Genes (internal stop)      :: 22 of 103
            Pseudo Genes (multiple problems)  :: 26 of 103
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770447
                     /organism="Haloferax chudinovii"
                     /mol_type="genomic DNA"
                     /strain="DSM 26526"
                     /type_material="type strain of Haloferax chudinovii"
                     /db_xref="taxon:1109010"
                     /collection_date="2021"
WGS         JBHTAB010000001-JBHTAB010000021
WGS_SCAFLD  NZ_JBHTAB010000001-NZ_JBHTAB010000021
//
LOCUS       NZ_JBHTAE010000000   3895890 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomicroarcula sp. GCM10025335 strain DFY41, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAE000000000
VERSION     NZ_JBHTAE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283194
            Assembly: GCF_042663445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicroarcula sp. GCM10025335
  ORGANISM  Halomicroarcula sp. GCM10025335
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3895890)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3895890)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAE000000000.1.
            The Halomicroarcula sp. GCM10025335 whole genome shotgun (WGS)
            project has the project accession NZ_JBHTAE000000000.  This version
            of the project (01) has the accession number NZ_JBHTAE010000000,
            and consists of sequences JBHTAE010000001-JBHTAE010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 104x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663445.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:49:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,062
            CDSs (total)                      :: 3,985
            Genes (coding)                    :: 3,928
            CDSs (with protein)               :: 3,928
            Genes (RNA)                       :: 77
            rRNAs                             :: 2, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 20 of 57
            Pseudo Genes (incomplete)         :: 40 of 57
            Pseudo Genes (internal stop)      :: 11 of 57
            Pseudo Genes (multiple problems)  :: 13 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3895890
                     /organism="Halomicroarcula sp. GCM10025335"
                     /mol_type="genomic DNA"
                     /strain="DFY41"
                     /db_xref="taxon:3252668"
                     /collection_date="2022"
WGS         JBHTAE010000001-JBHTAE010000016
WGS_SCAFLD  NZ_JBHTAE010000001-NZ_JBHTAE010000016
//
LOCUS       NZ_JBHTAL010000000   3794693 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomicroarcula sp. GCM10025324 strain ZS-22-S1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBHTAL000000000
VERSION     NZ_JBHTAL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283187
            Assembly: GCF_042663425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicroarcula sp. GCM10025324
  ORGANISM  Halomicroarcula sp. GCM10025324
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3794693)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3794693)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAL000000000.1.
            The Halomicroarcula sp. GCM10025324 whole genome shotgun (WGS)
            project has the project accession NZ_JBHTAL000000000.  This version
            of the project (01) has the accession number NZ_JBHTAL010000000,
            and consists of sequences JBHTAL010000001-JBHTAL010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 356.05x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663425.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:48:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,984
            CDSs (total)                      :: 3,924
            Genes (coding)                    :: 3,802
            CDSs (with protein)               :: 3,802
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 70 of 122
            Pseudo Genes (incomplete)         :: 58 of 122
            Pseudo Genes (internal stop)      :: 9 of 122
            Pseudo Genes (multiple problems)  :: 14 of 122
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3794693
                     /organism="Halomicroarcula sp. GCM10025324"
                     /mol_type="genomic DNA"
                     /strain="ZS-22-S1"
                     /db_xref="taxon:3252667"
                     /collection_date="2022"
WGS         JBHTAL010000001-JBHTAL010000006
WGS_SCAFLD  NZ_JBHTAL010000001-NZ_JBHTAL010000006
//
LOCUS       NZ_JBHTAA010000000   3514305 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloferax namakaokahaiae strain DSM 29988, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAA000000000
VERSION     NZ_JBHTAA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283199
            Assembly: GCF_042663225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax namakaokahaiae
  ORGANISM  Haloferax namakaokahaiae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3514305)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3514305)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAA000000000.1.
            The Haloferax namakaokahaiae whole genome shotgun (WGS) project has
            the project accession NZ_JBHTAA000000000.  This version of the
            project (01) has the accession number NZ_JBHTAA010000000, and
            consists of sequences JBHTAA010000001-JBHTAA010000015.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 164x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663225.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:47:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,641
            CDSs (total)                      :: 3,577
            Genes (coding)                    :: 3,562
            CDSs (with protein)               :: 3,562
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 3 of 15
            Pseudo Genes (incomplete)         :: 13 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 3 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3514305
                     /organism="Haloferax namakaokahaiae"
                     /mol_type="genomic DNA"
                     /strain="DSM 29988"
                     /type_material="type strain of Haloferax namakaokahaiae"
                     /db_xref="taxon:1748331"
                     /collection_date="2022"
WGS         JBHTAA010000001-JBHTAA010000015
WGS_SCAFLD  NZ_JBHTAA010000001-NZ_JBHTAA010000015
//
LOCUS       NZ_JBHTAG010000000   3367350 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobaculum marinum strain DT55, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHTAG000000000
VERSION     NZ_JBHTAG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283192
            Assembly: GCF_042663245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum marinum
  ORGANISM  Halobaculum marinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 3367350)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3367350)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAG000000000.1.
            The Halobaculum marinum whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAG000000000.  This version of the project
            (01) has the accession number NZ_JBHTAG010000000, and consists of
            sequences JBHTAG010000001-JBHTAG010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 23x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663245.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:48:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,442
            CDSs (total)                      :: 3,386
            Genes (coding)                    :: 3,365
            CDSs (with protein)               :: 3,365
            Genes (RNA)                       :: 56
            rRNAs                             :: 4, 4 (16S, 23S)
            partial rRNAs                     :: 4, 4 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 6 of 21
            Pseudo Genes (incomplete)         :: 16 of 21
            Pseudo Genes (internal stop)      :: 1 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367350
                     /organism="Halobaculum marinum"
                     /mol_type="genomic DNA"
                     /strain="DT55"
                     /type_material="type strain of Halobaculum marinum"
                     /db_xref="taxon:3031996"
                     /collection_date="2023"
WGS         JBHTAG010000001-JBHTAG010000008
WGS_SCAFLD  NZ_JBHTAG010000001-NZ_JBHTAG010000008
//
LOCUS       NZ_JBHTBF010000000   4138342 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomarina halobia strain PSR21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHTBF000000000
VERSION     NZ_JBHTBF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283166
            Assembly: GCF_042664745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina halobia
  ORGANISM  Halomarina halobia
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 4138342)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4138342)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTBF000000000.1.
            The Halomarina halobia whole genome shotgun (WGS) project has the
            project accession NZ_JBHTBF000000000.  This version of the project
            (01) has the accession number NZ_JBHTBF010000000, and consists of
            sequences JBHTBF010000001-JBHTBF010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 140x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042664745.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:52:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,207
            CDSs (total)                      :: 4,155
            Genes (coding)                    :: 4,076
            CDSs (with protein)               :: 4,076
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 30 of 79
            Pseudo Genes (incomplete)         :: 56 of 79
            Pseudo Genes (internal stop)      :: 14 of 79
            Pseudo Genes (multiple problems)  :: 18 of 79
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138342
                     /organism="Halomarina halobia"
                     /mol_type="genomic DNA"
                     /strain="PSR21"
                     /type_material="type strain of Halomarina halobia"
                     /db_xref="taxon:3033386"
                     /collection_date="2023"
WGS         JBHTBF010000001-JBHTBF010000008
WGS_SCAFLD  NZ_JBHTBF010000001-NZ_JBHTBF010000008
//
LOCUS       NZ_JBHTAX010000000   5405371 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halocatena marina strain RDMS1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHTAX000000000
VERSION     NZ_JBHTAX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283174
            Assembly: GCF_042663845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halocatena marina
  ORGANISM  Halocatena marina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halocatena.
REFERENCE   1  (bases 1 to 5405371)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 5405371)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAX000000000.1.
            The Halocatena marina whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAX000000000.  This version of the project
            (01) has the accession number NZ_JBHTAX010000000, and consists of
            sequences JBHTAX010000001-JBHTAX010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 424.52x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663845.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:55:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,743
            CDSs (total)                      :: 5,691
            Genes (coding)                    :: 4,992
            CDSs (with protein)               :: 4,992
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 699
            CDSs (without protein)            :: 699
            Pseudo Genes (ambiguous residues) :: 0 of 699
            Pseudo Genes (frameshifted)       :: 569 of 699
            Pseudo Genes (incomplete)         :: 169 of 699
            Pseudo Genes (internal stop)      :: 36 of 699
            Pseudo Genes (multiple problems)  :: 63 of 699
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5405371
                     /organism="Halocatena marina"
                     /mol_type="genomic DNA"
                     /strain="RDMS1"
                     /db_xref="taxon:2934937"
                     /collection_date="2023"
WGS         JBHTAX010000001-JBHTAX010000008
WGS_SCAFLD  NZ_JBHTAX010000001-NZ_JBHTAX010000008
//
LOCUS       NZ_JBHTAM010000000   4281018 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halalkalicoccus sp. GCM10025322 strain FCH27, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAM000000000
VERSION     NZ_JBHTAM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283185
            Assembly: GCF_042663525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halalkalicoccus sp. GCM10025322
  ORGANISM  Halalkalicoccus sp. GCM10025322
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halalkalicoccus.
REFERENCE   1  (bases 1 to 4281018)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4281018)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAM000000000.1.
            The Halalkalicoccus sp. GCM10025322 whole genome shotgun (WGS)
            project has the project accession NZ_JBHTAM000000000.  This version
            of the project (01) has the accession number NZ_JBHTAM010000000,
            and consists of sequences JBHTAM010000001-JBHTAM010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 219.03x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663525.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:53:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,442
            CDSs (total)                      :: 4,385
            Genes (coding)                    :: 4,234
            CDSs (with protein)               :: 4,234
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 69 of 151
            Pseudo Genes (incomplete)         :: 89 of 151
            Pseudo Genes (internal stop)      :: 25 of 151
            Pseudo Genes (multiple problems)  :: 27 of 151
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4281018
                     /organism="Halalkalicoccus sp. GCM10025322"
                     /mol_type="genomic DNA"
                     /strain="FCH27"
                     /db_xref="taxon:3252661"
                     /collection_date="2022"
WGS         JBHTAM010000001-JBHTAM010000006
WGS_SCAFLD  NZ_JBHTAM010000001-NZ_JBHTAM010000006
//
LOCUS       NZ_JBHSYZ010000000   4533515 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomicroarcula sp. GCM10025709 strain YJ-61-S, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBHSYZ000000000
VERSION     NZ_JBHSYZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283228
            Assembly: GCF_042662845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicroarcula sp. GCM10025709
  ORGANISM  Halomicroarcula sp. GCM10025709
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4533515)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4533515)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSYZ000000000.1.
            The Halomicroarcula sp. GCM10025709 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSYZ000000000.  This version
            of the project (01) has the accession number NZ_JBHSYZ010000000,
            and consists of sequences JBHSYZ010000001-JBHSYZ010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 292.77x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662845.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:49:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,122
            CDSs (total)                      :: 5,064
            Genes (coding)                    :: 3,930
            CDSs (with protein)               :: 3,930
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1,134
            CDSs (without protein)            :: 1,134
            Pseudo Genes (ambiguous residues) :: 0 of 1,134
            Pseudo Genes (frameshifted)       :: 934 of 1,134
            Pseudo Genes (incomplete)         :: 284 of 1,134
            Pseudo Genes (internal stop)      :: 20 of 1,134
            Pseudo Genes (multiple problems)  :: 94 of 1,134
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4533515
                     /organism="Halomicroarcula sp. GCM10025709"
                     /mol_type="genomic DNA"
                     /strain="YJ-61-S"
                     /db_xref="taxon:3252669"
                     /collection_date="2022"
WGS         JBHSYZ010000001-JBHSYZ010000009
WGS_SCAFLD  NZ_JBHSYZ010000001-NZ_JBHSYZ010000009
//
LOCUS       NZ_JBHTBB010000000   4326963 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomarina halobia strain PSR21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHTBB000000000
VERSION     NZ_JBHTBB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283170
            Assembly: GCF_042663765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina halobia
  ORGANISM  Halomarina halobia
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 4326963)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4326963)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTBB000000000.1.
            The Halomarina halobia whole genome shotgun (WGS) project has the
            project accession NZ_JBHTBB000000000.  This version of the project
            (01) has the accession number NZ_JBHTBB010000000, and consists of
            sequences JBHTBB010000001-JBHTBB010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 600x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663765.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:56:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,429
            CDSs (total)                      :: 4,376
            Genes (coding)                    :: 4,272
            CDSs (with protein)               :: 4,272
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 47 of 104
            Pseudo Genes (incomplete)         :: 64 of 104
            Pseudo Genes (internal stop)      :: 18 of 104
            Pseudo Genes (multiple problems)  :: 21 of 104
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4326963
                     /organism="Halomarina halobia"
                     /mol_type="genomic DNA"
                     /strain="PSR21"
                     /type_material="type strain of Halomarina halobia"
                     /db_xref="taxon:3033386"
                     /collection_date="2023"
WGS         JBHTBB010000001-JBHTBB010000009
WGS_SCAFLD  NZ_JBHTBB010000001-NZ_JBHTBB010000009
//
LOCUS       NZ_JBHUDH010000000   2764269 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halolamina salina strain CGMCC 1.12285, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDH000000000
VERSION     NZ_JBHUDH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282687
            Assembly: GCF_042678005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina salina
  ORGANISM  Halolamina salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2764269)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2764269)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDH000000000.1.
            The Halolamina salina whole genome shotgun (WGS) project has the
            project accession NZ_JBHUDH000000000.  This version of the project
            (01) has the accession number NZ_JBHUDH010000000, and consists of
            sequences JBHUDH010000001-JBHUDH010000258.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 65x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042678005.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:00:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,238
            CDSs (total)                      :: 3,185
            Genes (coding)                    :: 2,941
            CDSs (with protein)               :: 2,941
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 244
            CDSs (without protein)            :: 244
            Pseudo Genes (ambiguous residues) :: 0 of 244
            Pseudo Genes (frameshifted)       :: 27 of 244
            Pseudo Genes (incomplete)         :: 223 of 244
            Pseudo Genes (internal stop)      :: 1 of 244
            Pseudo Genes (multiple problems)  :: 6 of 244
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764269
                     /organism="Halolamina salina"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12285"
                     /db_xref="taxon:1220023"
                     /collection_date="2022"
WGS         JBHUDH010000001-JBHUDH010000258
WGS_SCAFLD  NZ_JBHUDH010000001-NZ_JBHUDH010000258
//
LOCUS       NZ_JBHUDC010000000   4067544 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halomarina rubra strain CGMCC 1.12563, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDC000000000
VERSION     NZ_JBHUDC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282692
            Assembly: GCF_042677885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina rubra
  ORGANISM  Halomarina rubra
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 4067544)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4067544)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDC000000000.1.
            The Halomarina rubra whole genome shotgun (WGS) project has the
            project accession NZ_JBHUDC000000000.  This version of the project
            (01) has the accession number NZ_JBHUDC010000000, and consists of
            sequences JBHUDC010000001-JBHUDC010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 164x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042677885.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:03:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,280
            CDSs (total)                      :: 4,229
            Genes (coding)                    :: 4,175
            CDSs (with protein)               :: 4,175
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 2 of 54
            Pseudo Genes (frameshifted)       :: 13 of 54
            Pseudo Genes (incomplete)         :: 43 of 54
            Pseudo Genes (internal stop)      :: 4 of 54
            Pseudo Genes (multiple problems)  :: 8 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067544
                     /organism="Halomarina rubra"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12563"
                     /type_material="type strain of Halomarina rubra"
                     /db_xref="taxon:2071873"
                     /collection_date="2022"
WGS         JBHUDC010000001-JBHUDC010000016
WGS_SCAFLD  NZ_JBHUDC010000001-NZ_JBHUDC010000016
//
LOCUS       NZ_JBHUDP010000000   3859107 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobellus litoreus strain CGMCC 1.10387, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDP000000000
VERSION     NZ_JBHUDP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282679
            Assembly: GCF_042678065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus litoreus
  ORGANISM  Halobellus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3859107)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3859107)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDP000000000.1.
            The Halobellus litoreus whole genome shotgun (WGS) project has the
            project accession NZ_JBHUDP000000000.  This version of the project
            (01) has the accession number NZ_JBHUDP010000000, and consists of
            sequences JBHUDP010000001-JBHUDP010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 169x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042678065.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:02:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,779
            CDSs (total)                      :: 3,725
            Genes (coding)                    :: 3,644
            CDSs (with protein)               :: 3,644
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 30 of 81
            Pseudo Genes (incomplete)         :: 57 of 81
            Pseudo Genes (internal stop)      :: 16 of 81
            Pseudo Genes (multiple problems)  :: 20 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3859107
                     /organism="Halobellus litoreus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10387"
                     /type_material="type strain of Halobellus litoreus"
                     /db_xref="taxon:755310"
                     /collection_date="2021"
WGS         JBHUDP010000001-JBHUDP010000030
WGS_SCAFLD  NZ_JBHUDP010000001-NZ_JBHUDP010000030
//
LOCUS       NZ_JBHUDM010000000   3823863 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halohasta litorea strain CGMCC 1.10593, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDM000000000
VERSION     NZ_JBHUDM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282682
            Assembly: GCF_042677985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halohasta litorea
  ORGANISM  Halohasta litorea
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halohasta.
REFERENCE   1  (bases 1 to 3823863)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3823863)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDM000000000.1.
            The Halohasta litorea whole genome shotgun (WGS) project has the
            project accession NZ_JBHUDM000000000.  This version of the project
            (01) has the accession number NZ_JBHUDM010000000, and consists of
            sequences JBHUDM010000001-JBHUDM010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 226x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042677985.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:01:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,947
            CDSs (total)                      :: 3,886
            Genes (coding)                    :: 3,806
            CDSs (with protein)               :: 3,806
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 34 of 80
            Pseudo Genes (incomplete)         :: 66 of 80
            Pseudo Genes (internal stop)      :: 17 of 80
            Pseudo Genes (multiple problems)  :: 27 of 80
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3823863
                     /organism="Halohasta litorea"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10593"
                     /type_material="type strain of Halohasta litorea"
                     /db_xref="taxon:869891"
                     /collection_date="2021"
WGS         JBHUDM010000001-JBHUDM010000052
WGS_SCAFLD  NZ_JBHUDM010000001-NZ_JBHUDM010000052
//
LOCUS       NZ_JBHUDK010000000   3913887 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halobellus rarus strain CGMCC 1.12121, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDK000000000
VERSION     NZ_JBHUDK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282684
            Assembly: GCF_042677905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus rarus
  ORGANISM  Halobellus rarus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3913887)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3913887)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDK000000000.1.
            The Halobellus rarus whole genome shotgun (WGS) project has the
            project accession NZ_JBHUDK000000000.  This version of the project
            (01) has the accession number NZ_JBHUDK010000000, and consists of
            sequences JBHUDK010000001-JBHUDK010000035.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042677905.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:04:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,888
            CDSs (total)                      :: 3,835
            Genes (coding)                    :: 3,722
            CDSs (with protein)               :: 3,722
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1 (16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 2 of 113
            Pseudo Genes (frameshifted)       :: 35 of 113
            Pseudo Genes (incomplete)         :: 80 of 113
            Pseudo Genes (internal stop)      :: 19 of 113
            Pseudo Genes (multiple problems)  :: 19 of 113
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3913887
                     /organism="Halobellus rarus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12121"
                     /type_material="type strain of Halobellus rarus"
                     /db_xref="taxon:1126237"
                     /collection_date="2022"
WGS         JBHUDK010000001-JBHUDK010000035
WGS_SCAFLD  NZ_JBHUDK010000001-NZ_JBHUDK010000035
//
LOCUS       NZ_JBHUDO010000000   4047592 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloarchaeobius litoreus strain CGMCC 1.10390, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDO000000000
VERSION     NZ_JBHUDO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282680
            Assembly: GCF_042677925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius litoreus
  ORGANISM  Haloarchaeobius litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4047592)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4047592)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDO000000000.1.
            The Haloarchaeobius litoreus whole genome shotgun (WGS) project has
            the project accession NZ_JBHUDO000000000.  This version of the
            project (01) has the accession number NZ_JBHUDO010000000, and
            consists of sequences JBHUDO010000001-JBHUDO010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 201x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042677925.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:03:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,120
            CDSs (total)                      :: 4,066
            Genes (coding)                    :: 4,021
            CDSs (with protein)               :: 4,021
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 3, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 11 of 45
            Pseudo Genes (incomplete)         :: 37 of 45
            Pseudo Genes (internal stop)      :: 6 of 45
            Pseudo Genes (multiple problems)  :: 8 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4047592
                     /organism="Haloarchaeobius litoreus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10390"
                     /type_material="type strain of Haloarchaeobius litoreus"
                     /db_xref="taxon:755306"
                     /collection_date="2021"
WGS         JBHUDO010000001-JBHUDO010000008
WGS_SCAFLD  NZ_JBHUDO010000001-NZ_JBHUDO010000008
//
LOCUS       NZ_JBHUCZ010000000   2995317 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halolamina litorea strain CGMCC 1.12859, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUCZ000000000
VERSION     NZ_JBHUCZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282696
            Assembly: GCF_042678245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina litorea
  ORGANISM  Halolamina litorea
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2995317)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2995317)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUCZ000000000.1.
            The Halolamina litorea whole genome shotgun (WGS) project has the
            project accession NZ_JBHUCZ000000000.  This version of the project
            (01) has the accession number NZ_JBHUCZ010000000, and consists of
            sequences JBHUCZ010000001-JBHUCZ010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 114x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042678245.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:05:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,195
            CDSs (total)                      :: 3,145
            Genes (coding)                    :: 3,075
            CDSs (with protein)               :: 3,075
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 3 (16S, 23S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 6 of 70
            Pseudo Genes (incomplete)         :: 64 of 70
            Pseudo Genes (internal stop)      :: 0 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2995317
                     /organism="Halolamina litorea"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12859"
                     /type_material="type strain of Halolamina litorea"
                     /db_xref="taxon:1515593"
                     /collection_date="2022"
WGS         JBHUCZ010000001-JBHUCZ010000049
WGS_SCAFLD  NZ_JBHUCZ010000001-NZ_JBHUCZ010000049
//
LOCUS       NZ_JBHUDF010000000   2746913 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halolamina salifodinae strain CGMCC 1.12371, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDF000000000
VERSION     NZ_JBHUDF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282689
            Assembly: GCF_042677965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina salifodinae
  ORGANISM  Halolamina salifodinae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2746913)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2746913)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDF000000000.1.
            The Halolamina salifodinae whole genome shotgun (WGS) project has
            the project accession NZ_JBHUDF000000000.  This version of the
            project (01) has the accession number NZ_JBHUDF010000000, and
            consists of sequences JBHUDF010000001-JBHUDF010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 281x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042677965.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:05:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,928
            CDSs (total)                      :: 2,877
            Genes (coding)                    :: 2,805
            CDSs (with protein)               :: 2,805
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 13 of 72
            Pseudo Genes (incomplete)         :: 62 of 72
            Pseudo Genes (internal stop)      :: 4 of 72
            Pseudo Genes (multiple problems)  :: 7 of 72
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2746913
                     /organism="Halolamina salifodinae"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12371"
                     /db_xref="taxon:1202767"
                     /collection_date="2022"
WGS         JBHUDF010000001-JBHUDF010000018
WGS_SCAFLD  NZ_JBHUDF010000001-NZ_JBHUDF010000018
//
LOCUS       NZ_JBHUDI010000000   4047681 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloarchaeobius amylolyticus strain CGMCC 1.12230, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBHUDI000000000
VERSION     NZ_JBHUDI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282686
            Assembly: GCF_042678045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius amylolyticus
  ORGANISM  Haloarchaeobius amylolyticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4047681)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4047681)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDI000000000.1.
            The Haloarchaeobius amylolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JBHUDI000000000.  This version of the
            project (01) has the accession number NZ_JBHUDI010000000, and
            consists of sequences JBHUDI010000001-JBHUDI010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042678045.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:06:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,055
            CDSs (total)                      :: 4,004
            Genes (coding)                    :: 3,895
            CDSs (with protein)               :: 3,895
            Genes (RNA)                       :: 51
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 40 of 109
            Pseudo Genes (incomplete)         :: 76 of 109
            Pseudo Genes (internal stop)      :: 26 of 109
            Pseudo Genes (multiple problems)  :: 30 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4047681
                     /organism="Haloarchaeobius amylolyticus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12230"
                     /type_material="type strain of Haloarchaeobius
                     amylolyticus"
                     /db_xref="taxon:1198296"
                     /collection_date="2022"
WGS         JBHUDI010000001-JBHUDI010000013
WGS_SCAFLD  NZ_JBHUDI010000001-NZ_JBHUDI010000013
//
LOCUS       NZ_JBHSWY010000000   4061900 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haladaptatus sp. GCM10026878 strain DYSN1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSWY000000000
VERSION     NZ_JBHSWY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283306
            Assembly: GCF_042661925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. GCM10026878
  ORGANISM  Haladaptatus sp. GCM10026878
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 4061900)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4061900)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSWY000000000.1.
            The Haladaptatus sp. GCM10026878 whole genome shotgun (WGS) project
            has the project accession NZ_JBHSWY000000000.  This version of the
            project (01) has the accession number NZ_JBHSWY010000000, and
            consists of sequences JBHSWY010000001-JBHSWY010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 458.81x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661925.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:25:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,233
            CDSs (total)                      :: 4,178
            Genes (coding)                    :: 4,082
            CDSs (with protein)               :: 4,082
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 54 of 96
            Pseudo Genes (incomplete)         :: 51 of 96
            Pseudo Genes (internal stop)      :: 7 of 96
            Pseudo Genes (multiple problems)  :: 13 of 96
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4061900
                     /organism="Haladaptatus sp. GCM10026878"
                     /mol_type="genomic DNA"
                     /strain="DYSN1"
                     /db_xref="taxon:3252660"
                     /collection_date="2022"
WGS         JBHSWY010000001-JBHSWY010000008
WGS_SCAFLD  NZ_JBHSWY010000001-NZ_JBHSWY010000008
//
LOCUS       NZ_JBHSXD010000000   3965018 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haladaptatus sp. GCM10025893 strain DYSN1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSXD000000000
VERSION     NZ_JBHSXD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283296
            Assembly: GCF_042663905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. GCM10025893
  ORGANISM  Haladaptatus sp. GCM10025893
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 3965018)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3965018)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXD000000000.1.
            The Haladaptatus sp. GCM10025893 whole genome shotgun (WGS) project
            has the project accession NZ_JBHSXD000000000.  This version of the
            project (01) has the accession number NZ_JBHSXD010000000, and
            consists of sequences JBHSXD010000001-JBHSXD010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 458.81x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663905.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:52:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,250
            CDSs (total)                      :: 4,195
            Genes (coding)                    :: 3,682
            CDSs (with protein)               :: 3,682
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 513
            CDSs (without protein)            :: 513
            Pseudo Genes (ambiguous residues) :: 0 of 513
            Pseudo Genes (frameshifted)       :: 416 of 513
            Pseudo Genes (incomplete)         :: 122 of 513
            Pseudo Genes (internal stop)      :: 7 of 513
            Pseudo Genes (multiple problems)  :: 29 of 513
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965018
                     /organism="Haladaptatus sp. GCM10025893"
                     /mol_type="genomic DNA"
                     /strain="DYSN1"
                     /db_xref="taxon:3252659"
                     /collection_date="2022"
WGS         JBHSXD010000001-JBHSXD010000003
WGS_SCAFLD  NZ_JBHSXD010000001-NZ_JBHSXD010000003
//
LOCUS       NZ_JBHSZB010000000   3880116 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haladaptatus sp. GCM10025707 strain QDMS2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSZB000000000
VERSION     NZ_JBHSZB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283226
            Assembly: GCF_042662915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. GCM10025707
  ORGANISM  Haladaptatus sp. GCM10025707
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 3880116)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3880116)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZB000000000.1.
            The Haladaptatus sp. GCM10025707 whole genome shotgun (WGS) project
            has the project accession NZ_JBHSZB000000000.  This version of the
            project (01) has the accession number NZ_JBHSZB010000000, and
            consists of sequences JBHSZB010000001-JBHSZB010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 600x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662915.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:48:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,172
            CDSs (total)                      :: 4,120
            Genes (coding)                    :: 3,627
            CDSs (with protein)               :: 3,627
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 493
            CDSs (without protein)            :: 493
            Pseudo Genes (ambiguous residues) :: 0 of 493
            Pseudo Genes (frameshifted)       :: 396 of 493
            Pseudo Genes (incomplete)         :: 117 of 493
            Pseudo Genes (internal stop)      :: 7 of 493
            Pseudo Genes (multiple problems)  :: 24 of 493
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3880116
                     /organism="Haladaptatus sp. GCM10025707"
                     /mol_type="genomic DNA"
                     /strain="QDMS2"
                     /db_xref="taxon:3252658"
                     /collection_date="2022"
WGS         JBHSZB010000001-JBHSZB010000003
WGS_SCAFLD  NZ_JBHSZB010000001-NZ_JBHSZB010000003
//
LOCUS       NZ_JBHSIF010000000   4621478 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halostagnicola sp. GCM10023243 strain CG52, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSIF000000000
VERSION     NZ_JBHSIF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282977
            Assembly: GCF_042653415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostagnicola sp. GCM10023243
  ORGANISM  Halostagnicola sp. GCM10023243
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halostagnicola.
REFERENCE   1  (bases 1 to 4621478)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4621478)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSIF000000000.1.
            The Halostagnicola sp. GCM10023243 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSIF000000000.  This version
            of the project (01) has the accession number NZ_JBHSIF010000000,
            and consists of sequences JBHSIF010000001-JBHSIF010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 255x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042653415.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:09:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,534
            CDSs (total)                      :: 4,476
            Genes (coding)                    :: 4,341
            CDSs (with protein)               :: 4,341
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 69 of 135
            Pseudo Genes (incomplete)         :: 91 of 135
            Pseudo Genes (internal stop)      :: 31 of 135
            Pseudo Genes (multiple problems)  :: 46 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4621478
                     /organism="Halostagnicola sp. GCM10023243"
                     /mol_type="genomic DNA"
                     /strain="CG52"
                     /db_xref="taxon:3252682"
                     /collection_date="2023"
WGS         JBHSIF010000001-JBHSIF010000013
WGS_SCAFLD  NZ_JBHSIF010000001-NZ_JBHSIF010000013
//
LOCUS       NZ_JBHSHT010000000   4538556 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorussus aquaticus strain XZYJ18, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSHT000000000
VERSION     NZ_JBHSHT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282990
            Assembly: GCF_042653245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus aquaticus
  ORGANISM  Halorussus aquaticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4538556)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4538556)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSHT000000000.1.
            The Halorussus aquaticus whole genome shotgun (WGS) project has the
            project accession NZ_JBHSHT000000000.  This version of the project
            (01) has the accession number NZ_JBHSHT010000000, and consists of
            sequences JBHSHT010000001-JBHSHT010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 272x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042653245.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:10:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,647
            CDSs (total)                      :: 4,586
            Genes (coding)                    :: 4,521
            CDSs (with protein)               :: 4,521
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 5 (16S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 23 of 65
            Pseudo Genes (incomplete)         :: 39 of 65
            Pseudo Genes (internal stop)      :: 19 of 65
            Pseudo Genes (multiple problems)  :: 13 of 65
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4538556
                     /organism="Halorussus aquaticus"
                     /mol_type="genomic DNA"
                     /strain="XZYJ18"
                     /type_material="type strain of Halorussus aquaticus"
                     /db_xref="taxon:2953748"
                     /collection_date="2023"
WGS         JBHSHT010000001-JBHSHT010000010
WGS_SCAFLD  NZ_JBHSHT010000001-NZ_JBHSHT010000010
//
LOCUS       NZ_JBHSFC010000000   4739434 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorussus aquaticus strain XZYJ18, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSFC000000000
VERSION     NZ_JBHSFC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283069
            Assembly: GCF_042653805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus aquaticus
  ORGANISM  Halorussus aquaticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4739434)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4739434)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSFC000000000.1.
            The Halorussus aquaticus whole genome shotgun (WGS) project has the
            project accession NZ_JBHSFC000000000.  This version of the project
            (01) has the accession number NZ_JBHSFC010000000, and consists of
            sequences JBHSFC010000001-JBHSFC010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 512.65x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042653805.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:15:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,850
            CDSs (total)                      :: 4,785
            Genes (coding)                    :: 4,685
            CDSs (with protein)               :: 4,685
            Genes (RNA)                       :: 65
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 50 of 100
            Pseudo Genes (incomplete)         :: 49 of 100
            Pseudo Genes (internal stop)      :: 21 of 100
            Pseudo Genes (multiple problems)  :: 16 of 100
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4739434
                     /organism="Halorussus aquaticus"
                     /mol_type="genomic DNA"
                     /strain="XZYJ18"
                     /type_material="type strain of Halorussus aquaticus"
                     /db_xref="taxon:2953748"
                     /collection_date="2023"
WGS         JBHSFC010000001-JBHSFC010000004
WGS_SCAFLD  NZ_JBHSFC010000001-NZ_JBHSFC010000004
//
LOCUS       NZ_JBHSFD010000000   4790169 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halostagnicola sp. GCM10023398 strain CG52, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSFD000000000
VERSION     NZ_JBHSFD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283068
            Assembly: GCF_042654865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halostagnicola sp. GCM10023398
  ORGANISM  Halostagnicola sp. GCM10023398
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halostagnicola.
REFERENCE   1  (bases 1 to 4790169)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4790169)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSFD000000000.1.
            The Halostagnicola sp. GCM10023398 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSFD000000000.  This version
            of the project (01) has the accession number NZ_JBHSFD010000000,
            and consists of sequences JBHSFD010000001-JBHSFD010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 600x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042654865.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:28:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,695
            CDSs (total)                      :: 4,631
            Genes (coding)                    :: 4,461
            CDSs (with protein)               :: 4,461
            Genes (RNA)                       :: 64
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 170
            CDSs (without protein)            :: 170
            Pseudo Genes (ambiguous residues) :: 0 of 170
            Pseudo Genes (frameshifted)       :: 102 of 170
            Pseudo Genes (incomplete)         :: 100 of 170
            Pseudo Genes (internal stop)      :: 32 of 170
            Pseudo Genes (multiple problems)  :: 54 of 170
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4790169
                     /organism="Halostagnicola sp. GCM10023398"
                     /mol_type="genomic DNA"
                     /strain="CG52"
                     /db_xref="taxon:3252683"
                     /collection_date="2023"
WGS         JBHSFD010000001-JBHSFD010000005
WGS_SCAFLD  NZ_JBHSFD010000001-NZ_JBHSFD010000005
//
LOCUS       NZ_JBHSFA010000000   4593513 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halosolutus amylolyticus strain WLHS5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSFA000000000
VERSION     NZ_JBHSFA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283071
            Assembly: GCF_042654825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosolutus amylolyticus
  ORGANISM  Halosolutus amylolyticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halosolutus.
REFERENCE   1  (bases 1 to 4593513)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4593513)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSFA000000000.1.
            The Halosolutus amylolyticus whole genome shotgun (WGS) project has
            the project accession NZ_JBHSFA000000000.  This version of the
            project (01) has the accession number NZ_JBHSFA010000000, and
            consists of sequences JBHSFA010000001-JBHSFA010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042654825.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:28:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,531
            CDSs (total)                      :: 4,466
            Genes (coding)                    :: 4,413
            CDSs (with protein)               :: 4,413
            Genes (RNA)                       :: 65
            rRNAs                             :: 4, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 4, 6 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 25 of 53
            Pseudo Genes (incomplete)         :: 30 of 53
            Pseudo Genes (internal stop)      :: 13 of 53
            Pseudo Genes (multiple problems)  :: 13 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4593513
                     /organism="Halosolutus amylolyticus"
                     /mol_type="genomic DNA"
                     /strain="WLHS5"
                     /type_material="type strain of Halosolutus amylolyticus"
                     /db_xref="taxon:2932267"
                     /collection_date="2023"
WGS         JBHSFA010000001-JBHSFA010000013
WGS_SCAFLD  NZ_JBHSFA010000001-NZ_JBHSFA010000013
//
LOCUS       NZ_JBHSFB010000000   4948177 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorussus sp. GCM10023401 strain XZYJT-10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSFB000000000
VERSION     NZ_JBHSFB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283070
            Assembly: GCF_042654845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus sp. GCM10023401
  ORGANISM  Halorussus sp. GCM10023401
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4948177)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4948177)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSFB000000000.1.
            The Halorussus sp. GCM10023401 whole genome shotgun (WGS) project
            has the project accession NZ_JBHSFB000000000.  This version of the
            project (01) has the accession number NZ_JBHSFB010000000, and
            consists of sequences JBHSFB010000001-JBHSFB010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 190x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042654845.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:27:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,050
            CDSs (total)                      :: 4,992
            Genes (coding)                    :: 4,891
            CDSs (with protein)               :: 4,891
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 5, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 5, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 1 of 101
            Pseudo Genes (frameshifted)       :: 16 of 101
            Pseudo Genes (incomplete)         :: 85 of 101
            Pseudo Genes (internal stop)      :: 9 of 101
            Pseudo Genes (multiple problems)  :: 8 of 101
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4948177
                     /organism="Halorussus sp. GCM10023401"
                     /mol_type="genomic DNA"
                     /strain="XZYJT-10"
                     /db_xref="taxon:3252680"
                     /collection_date="2022"
WGS         JBHSFB010000001-JBHSFB010000088
WGS_SCAFLD  NZ_JBHSFB010000001-NZ_JBHSFB010000088
//
LOCUS       NZ_JBHSKY010000000   3192850 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubrum rubrum strain CGMCC 1.12124, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSKY000000000
VERSION     NZ_JBHSKY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282894
            Assembly: GCF_042657525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum rubrum
  ORGANISM  Halorubrum rubrum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3192850)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3192850)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSKY000000000.1.
            The Halorubrum rubrum whole genome shotgun (WGS) project has the
            project accession NZ_JBHSKY000000000.  This version of the project
            (01) has the accession number NZ_JBHSKY010000000, and consists of
            sequences JBHSKY010000001-JBHSKY010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 276x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042657525.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:55:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,224
            CDSs (total)                      :: 3,171
            Genes (coding)                    :: 3,111
            CDSs (with protein)               :: 3,111
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 15 of 60
            Pseudo Genes (incomplete)         :: 48 of 60
            Pseudo Genes (internal stop)      :: 5 of 60
            Pseudo Genes (multiple problems)  :: 8 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192850
                     /organism="Halorubrum rubrum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12124"
                     /type_material="type strain of Halorubrum rubrum"
                     /db_xref="taxon:1126240"
                     /collection_date="2022"
WGS         JBHSKY010000001-JBHSKY010000024
WGS_SCAFLD  NZ_JBHSKY010000001-NZ_JBHSKY010000024
//
LOCUS       NZ_JBHSKV010000000   3595690 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubrum glutamatedens strain CGMCC 1.16026, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSKV000000000
VERSION     NZ_JBHSKV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282897
            Assembly: GCF_042657325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum glutamatedens
  ORGANISM  Halorubrum glutamatedens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3595690)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3595690)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSKV000000000.1.
            The Halorubrum glutamatedens whole genome shotgun (WGS) project has
            the project accession NZ_JBHSKV000000000.  This version of the
            project (01) has the accession number NZ_JBHSKV010000000, and
            consists of sequences JBHSKV010000001-JBHSKV010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 539x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042657325.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:57:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,606
            CDSs (total)                      :: 3,553
            Genes (coding)                    :: 3,485
            CDSs (with protein)               :: 3,485
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 25 of 68
            Pseudo Genes (incomplete)         :: 51 of 68
            Pseudo Genes (internal stop)      :: 6 of 68
            Pseudo Genes (multiple problems)  :: 13 of 68
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3595690
                     /organism="Halorubrum glutamatedens"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.16026"
                     /type_material="type material of Halorubrum glutamatedens"
                     /db_xref="taxon:2707018"
                     /collection_date="2023"
WGS         JBHSKV010000001-JBHSKV010000033
WGS_SCAFLD  NZ_JBHSKV010000001-NZ_JBHSKV010000033
//
LOCUS       NZ_JBHSVN010000000   3106679 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halopenitus salinus strain CGMCC 1.12229, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSVN000000000
VERSION     NZ_JBHSVN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283356
            Assembly: GCF_042661185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopenitus salinus
  ORGANISM  Halopenitus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halopenitus.
REFERENCE   1  (bases 1 to 3106679)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3106679)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSVN000000000.1.
            The Halopenitus salinus whole genome shotgun (WGS) project has the
            project accession NZ_JBHSVN000000000.  This version of the project
            (01) has the accession number NZ_JBHSVN010000000, and consists of
            sequences JBHSVN010000001-JBHSVN010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 600x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661185.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:19:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,140
            CDSs (total)                      :: 3,079
            Genes (coding)                    :: 2,980
            CDSs (with protein)               :: 2,980
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 54 of 99
            Pseudo Genes (incomplete)         :: 51 of 99
            Pseudo Genes (internal stop)      :: 13 of 99
            Pseudo Genes (multiple problems)  :: 17 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3106679
                     /organism="Halopenitus salinus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12229"
                     /type_material="type strain of Halopenitus salinus"
                     /db_xref="taxon:1198295"
                     /collection_date="2022"
WGS         JBHSVN010000001-JBHSVN010000003
WGS_SCAFLD  NZ_JBHSVN010000001-NZ_JBHSVN010000003
//
LOCUS       NZ_JBHSWW010000000   3135916 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubrum tibetense strain CGMCC 1.3239, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSWW000000000
VERSION     NZ_JBHSWW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283310
            Assembly: GCF_042661865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum tibetense
  ORGANISM  Halorubrum tibetense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3135916)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3135916)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSWW000000000.1.
            The Halorubrum tibetense whole genome shotgun (WGS) project has the
            project accession NZ_JBHSWW000000000.  This version of the project
            (01) has the accession number NZ_JBHSWW010000000, and consists of
            sequences JBHSWW010000001-JBHSWW010000766.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 248x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661865.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:20:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,637
            CDSs (total)                      :: 3,572
            Genes (coding)                    :: 3,188
            CDSs (with protein)               :: 3,188
            Genes (RNA)                       :: 65
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1 (5S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 384
            CDSs (without protein)            :: 384
            Pseudo Genes (ambiguous residues) :: 0 of 384
            Pseudo Genes (frameshifted)       :: 18 of 384
            Pseudo Genes (incomplete)         :: 362 of 384
            Pseudo Genes (internal stop)      :: 11 of 384
            Pseudo Genes (multiple problems)  :: 6 of 384
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3135916
                     /organism="Halorubrum tibetense"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.3239"
                     /type_material="type strain of Halorubrum tibetense"
                     /db_xref="taxon:175631"
                     /collection_date="2021"
WGS         JBHSWW010000001-JBHSWW010000766
WGS_SCAFLD  NZ_JBHSWW010000001-NZ_JBHSWW010000766
//
LOCUS       NZ_JBHSZD010000000   2803160 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halonotius sp. GCM10025705 strain GH52, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSZD000000000
VERSION     NZ_JBHSZD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283224
            Assembly: GCF_042662885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halonotius sp. GCM10025705
  ORGANISM  Halonotius sp. GCM10025705
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halonotius.
REFERENCE   1  (bases 1 to 2803160)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2803160)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZD000000000.1.
            The Halonotius sp. GCM10025705 whole genome shotgun (WGS) project
            has the project accession NZ_JBHSZD000000000.  This version of the
            project (01) has the accession number NZ_JBHSZD010000000, and
            consists of sequences JBHSZD010000001-JBHSZD010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 600x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662885.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:35:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,013
            CDSs (total)                      :: 2,958
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 395
            CDSs (without protein)            :: 395
            Pseudo Genes (ambiguous residues) :: 0 of 395
            Pseudo Genes (frameshifted)       :: 334 of 395
            Pseudo Genes (incomplete)         :: 78 of 395
            Pseudo Genes (internal stop)      :: 16 of 395
            Pseudo Genes (multiple problems)  :: 29 of 395
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2803160
                     /organism="Halonotius sp. GCM10025705"
                     /mol_type="genomic DNA"
                     /strain="GH52"
                     /db_xref="taxon:3252678"
                     /collection_date="2023"
WGS         JBHSZD010000001-JBHSZD010000004
WGS_SCAFLD  NZ_JBHSZD010000001-NZ_JBHSZD010000004
//
LOCUS       NZ_JBHSXP010000000   3399592 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubrum ejinorense strain CGMCC 1.6782, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSXP000000000
VERSION     NZ_JBHSXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283280
            Assembly: GCF_042662405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ejinorense
  ORGANISM  Halorubrum ejinorense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3399592)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3399592)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXP000000000.1.
            The Halorubrum ejinorense whole genome shotgun (WGS) project has
            the project accession NZ_JBHSXP000000000.  This version of the
            project (01) has the accession number NZ_JBHSXP010000000, and
            consists of sequences JBHSXP010000001-JBHSXP010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 170x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662405.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:31:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,415
            CDSs (total)                      :: 3,361
            Genes (coding)                    :: 3,323
            CDSs (with protein)               :: 3,323
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1 (16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 14 of 38
            Pseudo Genes (incomplete)         :: 25 of 38
            Pseudo Genes (internal stop)      :: 10 of 38
            Pseudo Genes (multiple problems)  :: 9 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3399592
                     /organism="Halorubrum ejinorense"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.6782"
                     /type_material="type strain of Halorubrum ejinorense"
                     /db_xref="taxon:425309"
                     /collection_date="2021"
WGS         JBHSXP010000001-JBHSXP010000014
WGS_SCAFLD  NZ_JBHSXP010000001-NZ_JBHSXP010000014
//
LOCUS       NZ_JBHSZI010000000   3880191 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halovenus salina strain JCM 30072, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSZI000000000
VERSION     NZ_JBHSZI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283219
            Assembly: GCF_042662325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus salina
  ORGANISM  Halovenus salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3880191)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3880191)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZI000000000.1.
            The Halovenus salina whole genome shotgun (WGS) project has the
            project accession NZ_JBHSZI000000000.  This version of the project
            (01) has the accession number NZ_JBHSZI010000000, and consists of
            sequences JBHSZI010000001-JBHSZI010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 229.94x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662325.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:33:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,241
            CDSs (total)                      :: 4,186
            Genes (coding)                    :: 3,394
            CDSs (with protein)               :: 3,394
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 792
            CDSs (without protein)            :: 792
            Pseudo Genes (ambiguous residues) :: 0 of 792
            Pseudo Genes (frameshifted)       :: 599 of 792
            Pseudo Genes (incomplete)         :: 251 of 792
            Pseudo Genes (internal stop)      :: 16 of 792
            Pseudo Genes (multiple problems)  :: 72 of 792
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3880191
                     /organism="Halovenus salina"
                     /mol_type="genomic DNA"
                     /strain="JCM 30072"
                     /type_material="type strain of Halovenus salina"
                     /db_xref="taxon:1510225"
                     /collection_date="2022"
WGS         JBHSZI010000001-JBHSZI010000007
WGS_SCAFLD  NZ_JBHSZI010000001-NZ_JBHSZI010000007
//
LOCUS       NZ_JBHSXH010000000   3815367 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halopelagius fulvigenes strain YIM 94188, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSXH000000000
VERSION     NZ_JBHSXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283288
            Assembly: GCF_042662625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopelagius fulvigenes
  ORGANISM  Halopelagius fulvigenes
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 3815367)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3815367)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXH000000000.1.
            The Halopelagius fulvigenes whole genome shotgun (WGS) project has
            the project accession NZ_JBHSXH000000000.  This version of the
            project (01) has the accession number NZ_JBHSXH010000000, and
            consists of sequences JBHSXH010000001-JBHSXH010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 155x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662625.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:34:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,969
            CDSs (total)                      :: 3,910
            Genes (coding)                    :: 3,826
            CDSs (with protein)               :: 3,826
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 4 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 25 of 84
            Pseudo Genes (incomplete)         :: 67 of 84
            Pseudo Genes (internal stop)      :: 9 of 84
            Pseudo Genes (multiple problems)  :: 14 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3815367
                     /organism="Halopelagius fulvigenes"
                     /mol_type="genomic DNA"
                     /strain="YIM 94188"
                     /type_material="type strain of Halopelagius fulvigenes"
                     /db_xref="taxon:1198324"
                     /collection_date="2022"
WGS         JBHSXH010000001-JBHSXH010000019
WGS_SCAFLD  NZ_JBHSXH010000001-NZ_JBHSXH010000019
//
LOCUS       NZ_JBHSXI010000000   3716440 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubrum trueperi strain Y73, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSXI000000000
VERSION     NZ_JBHSXI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283287
            Assembly: GCF_042662525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum trueperi
  ORGANISM  Halorubrum trueperi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3716440)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3716440)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXI000000000.1.
            The Halorubrum trueperi whole genome shotgun (WGS) project has the
            project accession NZ_JBHSXI000000000.  This version of the project
            (01) has the accession number NZ_JBHSXI010000000, and consists of
            sequences JBHSXI010000001-JBHSXI010000039.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 144x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662525.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:35:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,745
            CDSs (total)                      :: 3,689
            Genes (coding)                    :: 3,565
            CDSs (with protein)               :: 3,565
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 42 of 124
            Pseudo Genes (incomplete)         :: 93 of 124
            Pseudo Genes (internal stop)      :: 29 of 124
            Pseudo Genes (multiple problems)  :: 31 of 124
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3716440
                     /organism="Halorubrum trueperi"
                     /mol_type="genomic DNA"
                     /strain="Y73"
                     /type_material="type strain of Halorubrum trueperi"
                     /db_xref="taxon:2004704"
                     /collection_date="2022"
WGS         JBHSXI010000001-JBHSXI010000039
WGS_SCAFLD  NZ_JBHSXI010000001-NZ_JBHSXI010000039
//
LOCUS       NZ_JBHSXL010000000   3006079 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halopenitus salinus strain SKJ47, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSXL000000000
VERSION     NZ_JBHSXL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283284
            Assembly: GCF_042662125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halopenitus salinus
  ORGANISM  Halopenitus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halopenitus.
REFERENCE   1  (bases 1 to 3006079)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3006079)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXL000000000.1.
            The Halopenitus salinus whole genome shotgun (WGS) project has the
            project accession NZ_JBHSXL000000000.  This version of the project
            (01) has the accession number NZ_JBHSXL010000000, and consists of
            sequences JBHSXL010000001-JBHSXL010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 563x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662125.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:36:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,036
            CDSs (total)                      :: 2,977
            Genes (coding)                    :: 2,903
            CDSs (with protein)               :: 2,903
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 29 of 74
            Pseudo Genes (incomplete)         :: 50 of 74
            Pseudo Genes (internal stop)      :: 12 of 74
            Pseudo Genes (multiple problems)  :: 15 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006079
                     /organism="Halopenitus salinus"
                     /mol_type="genomic DNA"
                     /strain="SKJ47"
                     /type_material="type strain of Halopenitus salinus"
                     /db_xref="taxon:1198295"
                     /collection_date="2022"
WGS         JBHSXL010000001-JBHSXL010000024
WGS_SCAFLD  NZ_JBHSXL010000001-NZ_JBHSXL010000024
//
LOCUS       NZ_JBHSXN010000000   4591014 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubellus litoreus strain GX26, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSXN000000000
VERSION     NZ_JBHSXN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283282
            Assembly: GCF_042662365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubellus litoreus
  ORGANISM  Halorubellus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Halorubellus.
REFERENCE   1  (bases 1 to 4591014)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4591014)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXN000000000.1.
            The Halorubellus litoreus whole genome shotgun (WGS) project has
            the project accession NZ_JBHSXN000000000.  This version of the
            project (01) has the accession number NZ_JBHSXN010000000, and
            consists of sequences JBHSXN010000001-JBHSXN010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 168x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662365.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:35:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,424
            CDSs (total)                      :: 4,370
            Genes (coding)                    :: 4,331
            CDSs (with protein)               :: 4,331
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 12 of 39
            Pseudo Genes (incomplete)         :: 26 of 39
            Pseudo Genes (internal stop)      :: 10 of 39
            Pseudo Genes (multiple problems)  :: 9 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4591014
                     /organism="Halorubellus litoreus"
                     /mol_type="genomic DNA"
                     /strain="GX26"
                     /type_material="type strain of Halorubellus litoreus"
                     /db_xref="taxon:755308"
                     /collection_date="2021"
WGS         JBHSXN010000001-JBHSXN010000009
WGS_SCAFLD  NZ_JBHSXN010000001-NZ_JBHSXN010000009
//
LOCUS       NZ_JBHTAP010000000   2811024 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halosegnis marinus strain DT85, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHTAP000000000
VERSION     NZ_JBHTAP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283182
            Assembly: GCF_042663465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosegnis marinus
  ORGANISM  Halosegnis marinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1  (bases 1 to 2811024)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2811024)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAP000000000.1.
            The Halosegnis marinus whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAP000000000.  This version of the project
            (01) has the accession number NZ_JBHTAP010000000, and consists of
            sequences JBHTAP010000001-JBHTAP010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 858.86x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663465.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:45:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,081
            CDSs (total)                      :: 3,029
            Genes (coding)                    :: 2,987
            CDSs (with protein)               :: 2,987
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 29 of 42
            Pseudo Genes (incomplete)         :: 13 of 42
            Pseudo Genes (internal stop)      :: 1 of 42
            Pseudo Genes (multiple problems)  :: 1 of 42
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2811024
                     /organism="Halosegnis marinus"
                     /mol_type="genomic DNA"
                     /strain="DT85"
                     /type_material="type strain of Halosegnis marinus"
                     /db_xref="taxon:3034023"
                     /collection_date="2022"
WGS         JBHTAP010000001-JBHTAP010000002
WGS_SCAFLD  NZ_JBHTAP010000001-NZ_JBHTAP010000002
//
LOCUS       NZ_JBHSZZ010000000   3172689 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubrum yunnanense strain Q85, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSZZ000000000
VERSION     NZ_JBHSZZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283200
            Assembly: GCF_042663285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum yunnanense
  ORGANISM  Halorubrum yunnanense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3172689)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3172689)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZZ000000000.1.
            The Halorubrum yunnanense whole genome shotgun (WGS) project has
            the project accession NZ_JBHSZZ000000000.  This version of the
            project (01) has the accession number NZ_JBHSZZ010000000, and
            consists of sequences JBHSZZ010000001-JBHSZZ010000116.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663285.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:44:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,257
            CDSs (total)                      :: 3,198
            Genes (coding)                    :: 3,060
            CDSs (with protein)               :: 3,060
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 4 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 29 of 138
            Pseudo Genes (incomplete)         :: 110 of 138
            Pseudo Genes (internal stop)      :: 23 of 138
            Pseudo Genes (multiple problems)  :: 23 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172689
                     /organism="Halorubrum yunnanense"
                     /mol_type="genomic DNA"
                     /strain="Q85"
                     /type_material="type strain of Halorubrum yunnanense"
                     /db_xref="taxon:1526162"
                     /collection_date="2022"
WGS         JBHSZZ010000001-JBHSZZ010000116
WGS_SCAFLD  NZ_JBHSZZ010000001-NZ_JBHSZZ010000116
//
LOCUS       NZ_JBHSZY010000000   3574973 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halovenus rubra strain R28, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSZY000000000
VERSION     NZ_JBHSZY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283201
            Assembly: GCF_042663305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus rubra
  ORGANISM  Halovenus rubra
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3574973)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3574973)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZY000000000.1.
            The Halovenus rubra whole genome shotgun (WGS) project has the
            project accession NZ_JBHSZY000000000.  This version of the project
            (01) has the accession number NZ_JBHSZY010000000, and consists of
            sequences JBHSZY010000001-JBHSZY010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 219x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663305.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:46:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,483
            CDSs (total)                      :: 3,423
            Genes (coding)                    :: 3,346
            CDSs (with protein)               :: 3,346
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 4, 3 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 33 of 77
            Pseudo Genes (incomplete)         :: 60 of 77
            Pseudo Genes (internal stop)      :: 16 of 77
            Pseudo Genes (multiple problems)  :: 26 of 77
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3574973
                     /organism="Halovenus rubra"
                     /mol_type="genomic DNA"
                     /strain="R28"
                     /type_material="type strain of Halovenus rubra"
                     /db_xref="taxon:869890"
                     /collection_date="2021"
WGS         JBHSZY010000001-JBHSZY010000048
WGS_SCAFLD  NZ_JBHSZY010000001-NZ_JBHSZY010000048
//
LOCUS       NZ_JBHTAU010000000   3850033 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloplanus litoreus strain GX21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHTAU000000000
VERSION     NZ_JBHTAU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283177
            Assembly: GCF_042663725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus litoreus
  ORGANISM  Haloplanus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3850033)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3850033)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAU000000000.1.
            The Haloplanus litoreus whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAU000000000.  This version of the project
            (01) has the accession number NZ_JBHTAU010000000, and consists of
            sequences JBHTAU010000001-JBHTAU010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1200x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663725.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:50:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,544
            CDSs (total)                      :: 4,473
            Genes (coding)                    :: 3,308
            CDSs (with protein)               :: 3,308
            Genes (RNA)                       :: 71
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1,165
            CDSs (without protein)            :: 1,165
            Pseudo Genes (ambiguous residues) :: 0 of 1,165
            Pseudo Genes (frameshifted)       :: 996 of 1,165
            Pseudo Genes (incomplete)         :: 256 of 1,165
            Pseudo Genes (internal stop)      :: 12 of 1,165
            Pseudo Genes (multiple problems)  :: 98 of 1,165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3850033
                     /organism="Haloplanus litoreus"
                     /mol_type="genomic DNA"
                     /strain="GX21"
                     /type_material="type strain of Haloplanus litoreus"
                     /db_xref="taxon:767515"
                     /collection_date="2021"
WGS         JBHTAU010000001-JBHTAU010000009
WGS_SCAFLD  NZ_JBHTAU010000001-NZ_JBHTAU010000009
//
LOCUS       NZ_JBHSZH010000000   4428855 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorussus caseinilyticus strain DT72, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSZH000000000
VERSION     NZ_JBHSZH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283220
            Assembly: GCF_042662985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus caseinilyticus
  ORGANISM  Halorussus caseinilyticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 4428855)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4428855)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZH000000000.1.
            The Halorussus caseinilyticus whole genome shotgun (WGS) project
            has the project accession NZ_JBHSZH000000000.  This version of the
            project (01) has the accession number NZ_JBHSZH010000000, and
            consists of sequences JBHSZH010000001-JBHSZH010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 600x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662985.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:47:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,731
            CDSs (total)                      :: 4,677
            Genes (coding)                    :: 3,853
            CDSs (with protein)               :: 3,853
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 824
            CDSs (without protein)            :: 824
            Pseudo Genes (ambiguous residues) :: 0 of 824
            Pseudo Genes (frameshifted)       :: 692 of 824
            Pseudo Genes (incomplete)         :: 165 of 824
            Pseudo Genes (internal stop)      :: 14 of 824
            Pseudo Genes (multiple problems)  :: 42 of 824
            CRISPR Arrays                     :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4428855
                     /organism="Halorussus caseinilyticus"
                     /mol_type="genomic DNA"
                     /strain="DT72"
                     /type_material="type strain of Halorussus caseinilyticus"
                     /db_xref="taxon:3034025"
                     /collection_date="2022"
WGS         JBHSZH010000001-JBHSZH010000006
WGS_SCAFLD  NZ_JBHSZH010000001-NZ_JBHSZH010000006
//
LOCUS       NZ_JBHTAS010000000   5339028 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halosimplex aquaticum strain XZYJT29, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAS000000000
VERSION     NZ_JBHTAS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283179
            Assembly: GCF_042663565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosimplex aquaticum
  ORGANISM  Halosimplex aquaticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halosimplex.
REFERENCE   1  (bases 1 to 5339028)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 5339028)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAS000000000.1.
            The Halosimplex aquaticum whole genome shotgun (WGS) project has
            the project accession NZ_JBHTAS000000000.  This version of the
            project (01) has the accession number NZ_JBHTAS010000000, and
            consists of sequences JBHTAS010000001-JBHTAS010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 671.23x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663565.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:49:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,278
            CDSs (total)                      :: 5,193
            Genes (coding)                    :: 5,055
            CDSs (with protein)               :: 5,055
            Genes (RNA)                       :: 85
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 77 of 138
            Pseudo Genes (incomplete)         :: 63 of 138
            Pseudo Genes (internal stop)      :: 7 of 138
            Pseudo Genes (multiple problems)  :: 9 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5339028
                     /organism="Halosimplex aquaticum"
                     /mol_type="genomic DNA"
                     /strain="XZYJT29"
                     /type_material="type strain of Halosimplex aquaticum"
                     /db_xref="taxon:3026162"
                     /collection_date="2023"
WGS         JBHTAS010000001-JBHTAS010000004
WGS_SCAFLD  NZ_JBHTAS010000001-NZ_JBHTAS010000004
//
LOCUS       NZ_JBHTAZ010000000   2808680 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halosegnis marinus strain DT85, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHTAZ000000000
VERSION     NZ_JBHTAZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283172
            Assembly: GCF_042663805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosegnis marinus
  ORGANISM  Halosegnis marinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1  (bases 1 to 2808680)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2808680)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAZ000000000.1.
            The Halosegnis marinus whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAZ000000000.  This version of the project
            (01) has the accession number NZ_JBHTAZ010000000, and consists of
            sequences JBHTAZ010000001-JBHTAZ010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 858.86x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663805.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:46:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,288
            CDSs (total)                      :: 3,236
            Genes (coding)                    :: 2,420
            CDSs (with protein)               :: 2,420
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 816
            CDSs (without protein)            :: 816
            Pseudo Genes (ambiguous residues) :: 0 of 816
            Pseudo Genes (frameshifted)       :: 664 of 816
            Pseudo Genes (incomplete)         :: 192 of 816
            Pseudo Genes (internal stop)      :: 0 of 816
            Pseudo Genes (multiple problems)  :: 40 of 816
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808680
                     /organism="Halosegnis marinus"
                     /mol_type="genomic DNA"
                     /strain="DT85"
                     /type_material="type strain of Halosegnis marinus"
                     /db_xref="taxon:3034023"
                     /collection_date="2022"
WGS         JBHTAZ010000001-JBHTAZ010000002
WGS_SCAFLD  NZ_JBHTAZ010000001-NZ_JBHTAZ010000002
//
LOCUS       NZ_JBHSZQ010000000   3573679 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halovenus rubra strain CGMCC 1.10592, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSZQ000000000
VERSION     NZ_JBHSZQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283209
            Assembly: GCF_042663145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus rubra
  ORGANISM  Halovenus rubra
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3573679)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3573679)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZQ000000000.1.
            The Halovenus rubra whole genome shotgun (WGS) project has the
            project accession NZ_JBHSZQ000000000.  This version of the project
            (01) has the accession number NZ_JBHSZQ010000000, and consists of
            sequences JBHSZQ010000001-JBHSZQ010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 211x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663145.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:46:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,487
            CDSs (total)                      :: 3,426
            Genes (coding)                    :: 3,351
            CDSs (with protein)               :: 3,351
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 4, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 4, 3 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 30 of 75
            Pseudo Genes (incomplete)         :: 60 of 75
            Pseudo Genes (internal stop)      :: 16 of 75
            Pseudo Genes (multiple problems)  :: 25 of 75
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3573679
                     /organism="Halovenus rubra"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10592"
                     /type_material="type strain of Halovenus rubra"
                     /db_xref="taxon:869890"
                     /collection_date="2021"
WGS         JBHSZQ010000001-JBHSZQ010000052
WGS_SCAFLD  NZ_JBHSZQ010000001-NZ_JBHSZQ010000052
//
LOCUS       NZ_JBHTAR010000000   3999574 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halospeciosus flavus strain XZGYJ-43, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAR000000000
VERSION     NZ_JBHTAR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283180
            Assembly: GCF_042663645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halospeciosus flavus
  ORGANISM  Halospeciosus flavus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halospeciosus.
REFERENCE   1  (bases 1 to 3999574)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3999574)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAR000000000.1.
            The Halospeciosus flavus whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAR000000000.  This version of the project
            (01) has the accession number NZ_JBHTAR010000000, and consists of
            sequences JBHTAR010000001-JBHTAR010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 555.09x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663645.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:49:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,235
            CDSs (total)                      :: 4,158
            Genes (coding)                    :: 3,975
            CDSs (with protein)               :: 3,975
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 113 of 183
            Pseudo Genes (incomplete)         :: 83 of 183
            Pseudo Genes (internal stop)      :: 12 of 183
            Pseudo Genes (multiple problems)  :: 24 of 183
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3999574
                     /organism="Halospeciosus flavus"
                     /mol_type="genomic DNA"
                     /strain="XZGYJ-43"
                     /type_material="type strain of Halospeciosus flavus"
                     /db_xref="taxon:3032283"
                     /collection_date="2023"
WGS         JBHTAR010000001-JBHTAR010000012
WGS_SCAFLD  NZ_JBHTAR010000001-NZ_JBHTAR010000012
//
LOCUS       NZ_JBHTAW010000000   3935485 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halospeciosus flavus strain XZGYJ-43, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAW000000000
VERSION     NZ_JBHTAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283175
            Assembly: GCF_042663865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halospeciosus flavus
  ORGANISM  Halospeciosus flavus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halospeciosus.
REFERENCE   1  (bases 1 to 3935485)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3935485)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAW000000000.1.
            The Halospeciosus flavus whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAW000000000.  This version of the project
            (01) has the accession number NZ_JBHTAW010000000, and consists of
            sequences JBHTAW010000001-JBHTAW010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 555.09x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663865.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:51:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,417
            CDSs (total)                      :: 4,343
            Genes (coding)                    :: 3,385
            CDSs (with protein)               :: 3,385
            Genes (RNA)                       :: 74
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 958
            CDSs (without protein)            :: 958
            Pseudo Genes (ambiguous residues) :: 0 of 958
            Pseudo Genes (frameshifted)       :: 769 of 958
            Pseudo Genes (incomplete)         :: 248 of 958
            Pseudo Genes (internal stop)      :: 14 of 958
            Pseudo Genes (multiple problems)  :: 72 of 958
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3935485
                     /organism="Halospeciosus flavus"
                     /mol_type="genomic DNA"
                     /strain="XZGYJ-43"
                     /type_material="type strain of Halospeciosus flavus"
                     /db_xref="taxon:3032283"
                     /collection_date="2023"
WGS         JBHTAW010000001-JBHTAW010000005
WGS_SCAFLD  NZ_JBHTAW010000001-NZ_JBHTAW010000005
//
LOCUS       NZ_JBHSZA010000000   3341053 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloplanus sp. GCM10025708 strain XH8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSZA000000000
VERSION     NZ_JBHSZA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283227
            Assembly: GCF_042663985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus sp. GCM10025708
  ORGANISM  Haloplanus sp. GCM10025708
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3341053)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3341053)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZA000000000.1.
            The Haloplanus sp. GCM10025708 whole genome shotgun (WGS) project
            has the project accession NZ_JBHSZA000000000.  This version of the
            project (01) has the accession number NZ_JBHSZA010000000, and
            consists of sequences JBHSZA010000001-JBHSZA010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 273.76x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663985.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:53:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,824
            CDSs (total)                      :: 3,758
            Genes (coding)                    :: 2,819
            CDSs (with protein)               :: 2,819
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 939
            CDSs (without protein)            :: 939
            Pseudo Genes (ambiguous residues) :: 0 of 939
            Pseudo Genes (frameshifted)       :: 761 of 939
            Pseudo Genes (incomplete)         :: 223 of 939
            Pseudo Genes (internal stop)      :: 9 of 939
            Pseudo Genes (multiple problems)  :: 53 of 939
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3341053
                     /organism="Haloplanus sp. GCM10025708"
                     /mol_type="genomic DNA"
                     /strain="XH8"
                     /db_xref="taxon:3252679"
                     /collection_date="2022"
WGS         JBHSZA010000001-JBHSZA010000013
WGS_SCAFLD  NZ_JBHSZA010000001-NZ_JBHSZA010000013
//
LOCUS       NZ_JBHTAT010000000   3744949 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloplanus litoreus strain GX21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHTAT000000000
VERSION     NZ_JBHTAT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283178
            Assembly: GCF_042663605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus litoreus
  ORGANISM  Haloplanus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3744949)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3744949)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAT000000000.1.
            The Haloplanus litoreus whole genome shotgun (WGS) project has the
            project accession NZ_JBHTAT000000000.  This version of the project
            (01) has the accession number NZ_JBHTAT010000000, and consists of
            sequences JBHTAT010000001-JBHTAT010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1200x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663605.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:50:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,992
            CDSs (total)                      :: 3,924
            Genes (coding)                    :: 3,824
            CDSs (with protein)               :: 3,824
            Genes (RNA)                       :: 68
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 55 of 100
            Pseudo Genes (incomplete)         :: 45 of 100
            Pseudo Genes (internal stop)      :: 8 of 100
            Pseudo Genes (multiple problems)  :: 8 of 100
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3744949
                     /organism="Haloplanus litoreus"
                     /mol_type="genomic DNA"
                     /strain="GX21"
                     /type_material="type strain of Haloplanus litoreus"
                     /db_xref="taxon:767515"
                     /collection_date="2021"
WGS         JBHTAT010000001-JBHTAT010000008
WGS_SCAFLD  NZ_JBHTAT010000001-NZ_JBHTAT010000008
//
LOCUS       NZ_JBHTBL010000000   3187579 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubrum rutilum strain CGMCC 1.12554, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTBL000000000
VERSION     NZ_JBHTBL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283158
            Assembly: GCF_042665015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum rutilum
  ORGANISM  Halorubrum rutilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3187579)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3187579)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTBL000000000.1.
            The Halorubrum rutilum whole genome shotgun (WGS) project has the
            project accession NZ_JBHTBL000000000.  This version of the project
            (01) has the accession number NZ_JBHTBL010000000, and consists of
            sequences JBHTBL010000001-JBHTBL010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 44x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042665015.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:52:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,253
            CDSs (total)                      :: 3,199
            Genes (coding)                    :: 3,146
            CDSs (with protein)               :: 3,146
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 12 of 53
            Pseudo Genes (incomplete)         :: 40 of 53
            Pseudo Genes (internal stop)      :: 8 of 53
            Pseudo Genes (multiple problems)  :: 7 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3187579
                     /organism="Halorubrum rutilum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12554"
                     /type_material="type strain of Halorubrum rutilum"
                     /db_xref="taxon:1364933"
                     /collection_date="2022"
WGS         JBHTBL010000001-JBHTBL010000032
WGS_SCAFLD  NZ_JBHTBL010000001-NZ_JBHTBL010000032
//
LOCUS       NZ_JBHUDL010000000   3263672 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloplanus ruber strain CGMCC 1.10594, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDL000000000
VERSION     NZ_JBHUDL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282683
            Assembly: GCF_042678025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus ruber
  ORGANISM  Haloplanus ruber
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3263672)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3263672)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDL000000000.1.
            The Haloplanus ruber whole genome shotgun (WGS) project has the
            project accession NZ_JBHUDL000000000.  This version of the project
            (01) has the accession number NZ_JBHUDL010000000, and consists of
            sequences JBHUDL010000001-JBHUDL010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042678025.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:01:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,438
            CDSs (total)                      :: 3,383
            Genes (coding)                    :: 3,292
            CDSs (with protein)               :: 3,292
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 1 of 91
            Pseudo Genes (frameshifted)       :: 20 of 91
            Pseudo Genes (incomplete)         :: 69 of 91
            Pseudo Genes (internal stop)      :: 15 of 91
            Pseudo Genes (multiple problems)  :: 12 of 91
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3263672
                     /organism="Haloplanus ruber"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10594"
                     /type_material="type strain of Haloplanus ruber"
                     /db_xref="taxon:869892"
                     /collection_date="2021"
WGS         JBHUDL010000001-JBHUDL010000041
WGS_SCAFLD  NZ_JBHUDL010000001-NZ_JBHUDL010000041
//
LOCUS       NZ_JBHUDN010000000   3329113 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Haloplanus litoreus strain CGMCC 1.10456, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDN000000000
VERSION     NZ_JBHUDN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282681
            Assembly: GCF_042677945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus litoreus
  ORGANISM  Haloplanus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3329113)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3329113)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDN000000000.1.
            The Haloplanus litoreus whole genome shotgun (WGS) project has the
            project accession NZ_JBHUDN000000000.  This version of the project
            (01) has the accession number NZ_JBHUDN010000000, and consists of
            sequences JBHUDN010000001-JBHUDN010000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 49x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042677945.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:01:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,535
            CDSs (total)                      :: 3,480
            Genes (coding)                    :: 3,385
            CDSs (with protein)               :: 3,385
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 3 (16S, 23S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 28 of 95
            Pseudo Genes (incomplete)         :: 67 of 95
            Pseudo Genes (internal stop)      :: 7 of 95
            Pseudo Genes (multiple problems)  :: 7 of 95
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329113
                     /organism="Haloplanus litoreus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.10456"
                     /type_material="type strain of Haloplanus litoreus"
                     /db_xref="taxon:767515"
                     /collection_date="2021"
WGS         JBHUDN010000001-JBHUDN010000037
WGS_SCAFLD  NZ_JBHUDN010000001-NZ_JBHUDN010000037
//
LOCUS       NZ_JBHUDB010000000   3572857 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorubrum laminariae strain CGMCC 1.12689, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDB000000000
VERSION     NZ_JBHUDB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282693
            Assembly: GCF_042677845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum laminariae
  ORGANISM  Halorubrum laminariae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3572857)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3572857)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDB000000000.1.
            The Halorubrum laminariae whole genome shotgun (WGS) project has
            the project accession NZ_JBHUDB000000000.  This version of the
            project (01) has the accession number NZ_JBHUDB010000000, and
            consists of sequences JBHUDB010000001-JBHUDB010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 202x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042677845.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:01:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,673
            CDSs (total)                      :: 3,617
            Genes (coding)                    :: 3,501
            CDSs (with protein)               :: 3,501
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1 (16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 39 of 116
            Pseudo Genes (incomplete)         :: 84 of 116
            Pseudo Genes (internal stop)      :: 17 of 116
            Pseudo Genes (multiple problems)  :: 23 of 116
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572857
                     /organism="Halorubrum laminariae"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12689"
                     /type_material="type strain of Halorubrum laminariae"
                     /db_xref="taxon:1433523"
                     /collection_date="2022"
WGS         JBHUDB010000001-JBHUDB010000044
WGS_SCAFLD  NZ_JBHUDB010000001-NZ_JBHUDB010000044
//
LOCUS       NZ_JBHUDJ010000000   4138967 bp    DNA     linear   BCT 02-MAR-2025
DEFINITION  Halorientalis brevis strain CGMCC 1.12125, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHUDJ000000000
VERSION     NZ_JBHUDJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282685
            Assembly: GCF_042678165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis brevis
  ORGANISM  Halorientalis brevis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1  (bases 1 to 4138967)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4138967)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHUDJ000000000.1.
            The Halorientalis brevis whole genome shotgun (WGS) project has the
            project accession NZ_JBHUDJ000000000.  This version of the project
            (01) has the accession number NZ_JBHUDJ010000000, and consists of
            sequences JBHUDJ010000001-JBHUDJ010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 113x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042678165.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:05:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,266
            CDSs (total)                      :: 4,204
            Genes (coding)                    :: 4,173
            CDSs (with protein)               :: 4,173
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2 (5S, 16S)
            partial rRNAs                     :: 1, 5 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 13 of 31
            Pseudo Genes (incomplete)         :: 21 of 31
            Pseudo Genes (internal stop)      :: 3 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138967
                     /organism="Halorientalis brevis"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12125"
                     /type_material="type strain of Halorientalis brevis"
                     /db_xref="taxon:1126241"
                     /collection_date="2022"
WGS         JBHUDJ010000001-JBHUDJ010000020
WGS_SCAFLD  NZ_JBHUDJ010000001-NZ_JBHUDJ010000020
//
LOCUS       NZ_JBHSWS010000000   3419072 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Natronoarchaeum mannanilyticum strain YSM-123, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSWS000000000
VERSION     NZ_JBHSWS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283314
            Assembly: GCF_042661785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronoarchaeum mannanilyticum
  ORGANISM  Natronoarchaeum mannanilyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae.
REFERENCE   1  (bases 1 to 3419072)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3419072)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSWS000000000.1.
            The Natronoarchaeum mannanilyticum whole genome shotgun (WGS)
            project has the project accession NZ_JBHSWS000000000.  This version
            of the project (01) has the accession number NZ_JBHSWS010000000,
            and consists of sequences JBHSWS010000001-JBHSWS010000719.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 97x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661785.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:24:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,003
            CDSs (total)                      :: 3,950
            Genes (coding)                    :: 3,563
            CDSs (with protein)               :: 3,563
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 387
            CDSs (without protein)            :: 387
            Pseudo Genes (ambiguous residues) :: 0 of 387
            Pseudo Genes (frameshifted)       :: 13 of 387
            Pseudo Genes (incomplete)         :: 374 of 387
            Pseudo Genes (internal stop)      :: 5 of 387
            Pseudo Genes (multiple problems)  :: 5 of 387
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3419072
                     /organism="Natronoarchaeum mannanilyticum"
                     /mol_type="genomic DNA"
                     /strain="YSM-123"
                     /type_material="type strain of Natronoarchaeum
                     mannanilyticum"
                     /db_xref="taxon:926360"
                     /collection_date="2021"
WGS         JBHSWS010000001-JBHSWS010000719
WGS_SCAFLD  NZ_JBHSWS010000001-NZ_JBHSWS010000719
//
LOCUS       NZ_JBHSZF010000000   3600829 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Natronoarchaeum sp. GCM10025703 strain FCH23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSZF000000000
VERSION     NZ_JBHSZF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283222
            Assembly: GCF_042661985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronoarchaeum sp. GCM10025703
  ORGANISM  Natronoarchaeum sp. GCM10025703
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae.
REFERENCE   1  (bases 1 to 3600829)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3600829)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSZF000000000.1.
            The Natronoarchaeum sp. GCM10025703 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSZF000000000.  This version
            of the project (01) has the accession number NZ_JBHSZF010000000,
            and consists of sequences JBHSZF010000001-JBHSZF010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 600x
            Sequencing Technology  :: Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661985.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:28:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,971
            CDSs (total)                      :: 3,911
            Genes (coding)                    :: 3,059
            CDSs (with protein)               :: 3,059
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 852
            CDSs (without protein)            :: 852
            Pseudo Genes (ambiguous residues) :: 0 of 852
            Pseudo Genes (frameshifted)       :: 715 of 852
            Pseudo Genes (incomplete)         :: 184 of 852
            Pseudo Genes (internal stop)      :: 26 of 852
            Pseudo Genes (multiple problems)  :: 72 of 852
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3600829
                     /organism="Natronoarchaeum sp. GCM10025703"
                     /mol_type="genomic DNA"
                     /strain="FCH23"
                     /db_xref="taxon:3252685"
                     /collection_date="2022"
WGS         JBHSZF010000001-JBHSZF010000003
WGS_SCAFLD  NZ_JBHSZF010000001-NZ_JBHSZF010000003
//
LOCUS       NZ_JBHSWV010000000   6023675 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Natrinema soli strain LMG 29247, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBHSWV000000000
VERSION     NZ_JBHSWV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283311
            Assembly: GCF_042661765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema soli
  ORGANISM  Natrinema soli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 6023675)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 6023675)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSWV000000000.1.
            The Natrinema soli whole genome shotgun (WGS) project has the
            project accession NZ_JBHSWV000000000.  This version of the project
            (01) has the accession number NZ_JBHSWV010000000, and consists of
            sequences JBHSWV010000001-JBHSWV010000848.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 112x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042661765.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:39:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,848
            CDSs (total)                      :: 6,793
            Genes (coding)                    :: 5,913
            CDSs (with protein)               :: 5,913
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 880
            CDSs (without protein)            :: 880
            Pseudo Genes (ambiguous residues) :: 0 of 880
            Pseudo Genes (frameshifted)       :: 184 of 880
            Pseudo Genes (incomplete)         :: 761 of 880
            Pseudo Genes (internal stop)      :: 103 of 880
            Pseudo Genes (multiple problems)  :: 144 of 880
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6023675
                     /organism="Natrinema soli"
                     /mol_type="genomic DNA"
                     /strain="LMG 29247"
                     /type_material="type strain of Natrinema soli"
                     /db_xref="taxon:1930624"
                     /collection_date="2022"
WGS         JBHSWV010000001-JBHSWV010000848
WGS_SCAFLD  NZ_JBHSWV010000001-NZ_JBHSWV010000848
//
LOCUS       NZ_JBHTAN010000000   3598338 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Natronoarchaeum sp. GCM10025321 strain FCH23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAN000000000
VERSION     NZ_JBHTAN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283184
            Assembly: GCF_042663585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronoarchaeum sp. GCM10025321
  ORGANISM  Natronoarchaeum sp. GCM10025321
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae.
REFERENCE   1  (bases 1 to 3598338)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3598338)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAN000000000.1.
            The Natronoarchaeum sp. GCM10025321 whole genome shotgun (WGS)
            project has the project accession NZ_JBHTAN000000000.  This version
            of the project (01) has the accession number NZ_JBHTAN010000000,
            and consists of sequences JBHTAN010000001-JBHTAN010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 600x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663585.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:46:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,713
            CDSs (total)                      :: 3,653
            Genes (coding)                    :: 3,542
            CDSs (with protein)               :: 3,542
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 45 of 111
            Pseudo Genes (incomplete)         :: 61 of 111
            Pseudo Genes (internal stop)      :: 26 of 111
            Pseudo Genes (multiple problems)  :: 20 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598338
                     /organism="Natronoarchaeum sp. GCM10025321"
                     /mol_type="genomic DNA"
                     /strain="FCH23"
                     /db_xref="taxon:3252684"
                     /collection_date="2022"
WGS         JBHTAN010000001-JBHTAN010000009
WGS_SCAFLD  NZ_JBHTAN010000001-NZ_JBHTAN010000009
//
LOCUS       NZ_JBBENW010000000   3663852 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Salinibaculum salinum strain YCN56, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBBENW000000000
VERSION     NZ_JBBENW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40373478
            Assembly: GCF_037645885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibaculum salinum
  ORGANISM  Salinibaculum salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Salinibaculum.
REFERENCE   1  (bases 1 to 3663852)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3663852)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBENW000000000.1.
            The Salinibaculum salinum whole genome shotgun (WGS) project has
            the project accession NZ_JBBENW000000000.  This version of the
            project (01) has the accession number NZ_JBBENW010000000, and
            consists of sequences JBBENW010000001-JBBENW010000052.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037645885.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 12:51:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,759
            CDSs (total)                      :: 3,692
            Genes (coding)                    :: 3,608
            CDSs (with protein)               :: 3,608
            Genes (RNA)                       :: 67
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 30 of 84
            Pseudo Genes (incomplete)         :: 60 of 84
            Pseudo Genes (internal stop)      :: 19 of 84
            Pseudo Genes (multiple problems)  :: 22 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3663852
                     /organism="Salinibaculum salinum"
                     /mol_type="genomic DNA"
                     /strain="YCN56"
                     /isolation_source="sediment"
                     /type_material="type strain of Salinibaculum salinum"
                     /db_xref="taxon:3131996"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2019-08-22"
WGS         JBBENW010000001-JBBENW010000052
WGS_SCAFLD  NZ_JBBENW010000001-NZ_JBBENW010000052
//
LOCUS       NZ_JBHSJG010000000   4532189 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Saliphagus infecundisoli strain CGMCC 1.15824, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSJG000000000
VERSION     NZ_JBHSJG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282944
            Assembly: GCF_042652265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saliphagus infecundisoli
  ORGANISM  Saliphagus infecundisoli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Saliphagus.
REFERENCE   1  (bases 1 to 4532189)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4532189)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSJG000000000.1.
            The Saliphagus infecundisoli whole genome shotgun (WGS) project has
            the project accession NZ_JBHSJG000000000.  This version of the
            project (01) has the accession number NZ_JBHSJG010000000, and
            consists of sequences JBHSJG010000001-JBHSJG010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 275x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042652265.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:09:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,640
            CDSs (total)                      :: 4,574
            Genes (coding)                    :: 4,399
            CDSs (with protein)               :: 4,399
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 70 of 175
            Pseudo Genes (incomplete)         :: 144 of 175
            Pseudo Genes (internal stop)      :: 30 of 175
            Pseudo Genes (multiple problems)  :: 55 of 175
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4532189
                     /organism="Saliphagus infecundisoli"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.15824"
                     /type_material="type strain of Saliphagus infecundisoli"
                     /db_xref="taxon:1849069"
                     /collection_date="2022"
WGS         JBHSJG010000001-JBHSJG010000088
WGS_SCAFLD  NZ_JBHSJG010000001-NZ_JBHSJG010000088
//
LOCUS       NZ_JBHSKX010000000   4053457 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Salinirubrum litoreum strain CGMCC 1.12237, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSKX000000000
VERSION     NZ_JBHSKX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43282895
            Assembly: GCF_042657545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinirubrum litoreum
  ORGANISM  Salinirubrum litoreum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Salinirubrum.
REFERENCE   1  (bases 1 to 4053457)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4053457)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSKX000000000.1.
            The Salinirubrum litoreum whole genome shotgun (WGS) project has
            the project accession NZ_JBHSKX000000000.  This version of the
            project (01) has the accession number NZ_JBHSKX010000000, and
            consists of sequences JBHSKX010000001-JBHSKX010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 258x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042657545.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 13:59:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,997
            CDSs (total)                      :: 3,945
            Genes (coding)                    :: 3,907
            CDSs (with protein)               :: 3,907
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 6 of 38
            Pseudo Genes (incomplete)         :: 33 of 38
            Pseudo Genes (internal stop)      :: 2 of 38
            Pseudo Genes (multiple problems)  :: 3 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4053457
                     /organism="Salinirubrum litoreum"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.12237"
                     /type_material="type strain of Salinirubrum litoreum"
                     /db_xref="taxon:1126234"
                     /collection_date="2022"
WGS         JBHSKX010000001-JBHSKX010000004
WGS_SCAFLD  NZ_JBHSKX010000001-NZ_JBHSKX010000004
//
LOCUS       NZ_JBHSXJ010000000   5179350 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Salinirubellus sp. GCM10025818 strain SYNS196, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHSXJ000000000
VERSION     NZ_JBHSXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283286
            Assembly: GCF_042662185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinirubellus sp. GCM10025818
  ORGANISM  Salinirubellus sp. GCM10025818
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Salinirubellus.
REFERENCE   1  (bases 1 to 5179350)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 5179350)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHSXJ000000000.1.
            The Salinirubellus sp. GCM10025818 whole genome shotgun (WGS)
            project has the project accession NZ_JBHSXJ000000000.  This version
            of the project (01) has the accession number NZ_JBHSXJ010000000,
            and consists of sequences JBHSXJ010000001-JBHSXJ010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 138x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042662185.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:40:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,106
            CDSs (total)                      :: 5,052
            Genes (coding)                    :: 4,931
            CDSs (with protein)               :: 4,931
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 33 of 121
            Pseudo Genes (incomplete)         :: 86 of 121
            Pseudo Genes (internal stop)      :: 17 of 121
            Pseudo Genes (multiple problems)  :: 15 of 121
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5179350
                     /organism="Salinirubellus sp. GCM10025818"
                     /mol_type="genomic DNA"
                     /strain="SYNS196"
                     /db_xref="taxon:3252688"
                     /collection_date="2023"
WGS         JBHSXJ010000001-JBHSXJ010000014
WGS_SCAFLD  NZ_JBHSXJ010000001-NZ_JBHSXJ010000014
//
LOCUS       NZ_JBHTBG010000000   4255207 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Salinirubellus salinus strain ZS-35-S2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTBG000000000
VERSION     NZ_JBHTBG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283165
            Assembly: GCF_042664645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinirubellus salinus
  ORGANISM  Salinirubellus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Salinirubellus.
REFERENCE   1  (bases 1 to 4255207)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4255207)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTBG000000000.1.
            The Salinirubellus salinus whole genome shotgun (WGS) project has
            the project accession NZ_JBHTBG000000000.  This version of the
            project (01) has the accession number NZ_JBHTBG010000000, and
            consists of sequences JBHTBG010000001-JBHTBG010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042664645.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:50:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,379
            CDSs (total)                      :: 4,327
            Genes (coding)                    :: 4,299
            CDSs (with protein)               :: 4,299
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 7 of 28
            Pseudo Genes (incomplete)         :: 19 of 28
            Pseudo Genes (internal stop)      :: 5 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255207
                     /organism="Salinirubellus salinus"
                     /mol_type="genomic DNA"
                     /strain="ZS-35-S2"
                     /type_material="type strain of Salinirubellus salinus"
                     /db_xref="taxon:1364945"
                     /collection_date="2022"
WGS         JBHTBG010000001-JBHTBG010000004
WGS_SCAFLD  NZ_JBHTBG010000001-NZ_JBHTBG010000004
//
LOCUS       NZ_JBHTBC010000000   4376714 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Salinirubellus salinus strain ZS-35-S2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTBC000000000
VERSION     NZ_JBHTBC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283169
            Assembly: GCF_042663705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinirubellus salinus
  ORGANISM  Salinirubellus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Salinirubellus.
REFERENCE   1  (bases 1 to 4376714)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4376714)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTBC000000000.1.
            The Salinirubellus salinus whole genome shotgun (WGS) project has
            the project accession NZ_JBHTBC000000000.  This version of the
            project (01) has the accession number NZ_JBHTBC010000000, and
            consists of sequences JBHTBC010000001-JBHTBC010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 536.36x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663705.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:53:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,506
            CDSs (total)                      :: 4,453
            Genes (coding)                    :: 4,403
            CDSs (with protein)               :: 4,403
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 23 of 50
            Pseudo Genes (incomplete)         :: 24 of 50
            Pseudo Genes (internal stop)      :: 5 of 50
            Pseudo Genes (multiple problems)  :: 2 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4376714
                     /organism="Salinirubellus salinus"
                     /mol_type="genomic DNA"
                     /strain="ZS-35-S2"
                     /type_material="type strain of Salinirubellus salinus"
                     /db_xref="taxon:1364945"
                     /collection_date="2022"
WGS         JBHTBC010000001-JBHTBC010000002
WGS_SCAFLD  NZ_JBHTBC010000001-NZ_JBHTBC010000002
//
LOCUS       NZ_JBHTAD010000000   3871360 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Salinibaculum sp. GCM10025337 strain SYNS191, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAD000000000
VERSION     NZ_JBHTAD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283195
            Assembly: GCF_042663385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibaculum sp. GCM10025337
  ORGANISM  Salinibaculum sp. GCM10025337
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Salinibaculum.
REFERENCE   1  (bases 1 to 3871360)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3871360)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAD000000000.1.
            The Salinibaculum sp. GCM10025337 whole genome shotgun (WGS)
            project has the project accession NZ_JBHTAD000000000.  This version
            of the project (01) has the accession number NZ_JBHTAD010000000,
            and consists of sequences JBHTAD010000001-JBHTAD010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 36x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663385.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:51:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,020
            CDSs (total)                      :: 3,967
            Genes (coding)                    :: 3,904
            CDSs (with protein)               :: 3,904
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 16 of 63
            Pseudo Genes (incomplete)         :: 54 of 63
            Pseudo Genes (internal stop)      :: 7 of 63
            Pseudo Genes (multiple problems)  :: 14 of 63
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3871360
                     /organism="Salinibaculum sp. GCM10025337"
                     /mol_type="genomic DNA"
                     /strain="SYNS191"
                     /db_xref="taxon:3252686"
                     /collection_date="2023"
WGS         JBHTAD010000001-JBHTAD010000016
WGS_SCAFLD  NZ_JBHTAD010000001-NZ_JBHTAD010000016
//
LOCUS       NZ_JBHTAO010000000   4038213 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Salinigranum sp. GCM10025319 strain DT28, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTAO000000000
VERSION     NZ_JBHTAO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283183
            Assembly: GCF_042663545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinigranum sp. GCM10025319
  ORGANISM  Salinigranum sp. GCM10025319
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Salinigranum.
REFERENCE   1  (bases 1 to 4038213)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4038213)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTAO000000000.1.
            The Salinigranum sp. GCM10025319 whole genome shotgun (WGS) project
            has the project accession NZ_JBHTAO000000000.  This version of the
            project (01) has the accession number NZ_JBHTAO010000000, and
            consists of sequences JBHTAO010000001-JBHTAO010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 379.46x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042663545.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 14:52:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,005
            CDSs (total)                      :: 3,948
            Genes (coding)                    :: 3,607
            CDSs (with protein)               :: 3,607
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 341
            CDSs (without protein)            :: 341
            Pseudo Genes (ambiguous residues) :: 0 of 341
            Pseudo Genes (frameshifted)       :: 271 of 341
            Pseudo Genes (incomplete)         :: 75 of 341
            Pseudo Genes (internal stop)      :: 12 of 341
            Pseudo Genes (multiple problems)  :: 16 of 341
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4038213
                     /organism="Salinigranum sp. GCM10025319"
                     /mol_type="genomic DNA"
                     /strain="DT28"
                     /db_xref="taxon:3252687"
                     /collection_date="2022"
WGS         JBHTAO010000001-JBHTAO010000005
WGS_SCAFLD  NZ_JBHTAO010000001-NZ_JBHTAO010000005
//
LOCUS       NZ_JBHTCU010000000   5407055 bp    DNA     linear   BCT 03-MAR-2025
DEFINITION  Salinirubellus sp. GCM10025899 strain SYNS196, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHTCU000000000
VERSION     NZ_JBHTCU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43283302
            Assembly: GCF_042664605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinirubellus sp. GCM10025899
  ORGANISM  Salinirubellus sp. GCM10025899
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Salinirubellus.
REFERENCE   1  (bases 1 to 5407055)
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 5407055)
  AUTHORS   Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2024) WFCC-MIRCEN World Data Centre for
            Microorganisms (WDCM), The Institute of Microbiology of the Chinese
            Academy of Sciences, No. 1 Beichen West Road, Chaoyang Disct,
            Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHTCU000000000.1.
            The Salinirubellus sp. GCM10025899 whole genome shotgun (WGS)
            project has the project accession NZ_JBHTCU000000000.  This version
            of the project (01) has the accession number NZ_JBHTCU010000000,
            and consists of sequences JBHTCU010000001-JBHTCU010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v2.04; SPAdes v. v3.13.0;
                                      Velvet v. v1.2.10; Platanus-b v. v1.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 443.06x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_042664605.1-RS_2025_03_02
            Annotation Date                   :: 03/02/2025 15:02:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,323
            CDSs (total)                      :: 5,268
            Genes (coding)                    :: 5,097
            CDSs (with protein)               :: 5,097
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 171
            CDSs (without protein)            :: 171
            Pseudo Genes (ambiguous residues) :: 0 of 171
            Pseudo Genes (frameshifted)       :: 68 of 171
            Pseudo Genes (incomplete)         :: 104 of 171
            Pseudo Genes (internal stop)      :: 19 of 171
            Pseudo Genes (multiple problems)  :: 20 of 171
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5407055
                     /organism="Salinirubellus sp. GCM10025899"
                     /mol_type="genomic DNA"
                     /strain="SYNS196"
                     /db_xref="taxon:3252689"
                     /collection_date="2023"
WGS         JBHTCU010000001-JBHTCU010000005
WGS_SCAFLD  NZ_JBHTCU010000001-NZ_JBHTCU010000005
//
LOCUS       NZ_JAMQON010000000   4194977 bp    DNA     linear   BCT 06-MAR-2025
DEFINITION  Haloarcula saliterrae strain S1CR25-12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMQON000000000
VERSION     NZ_JAMQON000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28864572
            Assembly: GCF_031624395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula saliterrae
  ORGANISM  Haloarcula saliterrae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4194977)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Haloarcula sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4194977)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQON000000000.1.
            The Haloarcula saliterrae whole genome shotgun (WGS) project has
            the project accession NZ_JAMQON000000000.  This version of the
            project (01) has the accession number NZ_JAMQON010000000, and
            consists of sequences JAMQON010000001-JAMQON010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 409.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031624395.1-RS_2025_03_03
            Annotation Date                   :: 03/03/2025 04:14:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,345
            CDSs (total)                      :: 4,264
            Genes (coding)                    :: 4,221
            CDSs (with protein)               :: 4,221
            Genes (RNA)                       :: 81
            rRNAs                             :: 3, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3, 6 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 12 of 43
            Pseudo Genes (incomplete)         :: 33 of 43
            Pseudo Genes (internal stop)      :: 5 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4194977
                     /organism="Haloarcula saliterrae"
                     /mol_type="genomic DNA"
                     /strain="S1CR25-12"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halomicroarcula saliterrae"
                     /db_xref="taxon:2950534"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQON010000001-JAMQON010000020
WGS_SCAFLD  NZ_JAMQON010000001-NZ_JAMQON010000020
//
LOCUS       NZ_JAMQOS010000000   4288122 bp    DNA     linear   BCT 06-MAR-2025
DEFINITION  Haloarcula onubensis strain S3CR25-11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMQOS000000000
VERSION     NZ_JAMQOS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28864586
            Assembly: GCF_031624605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula onubensis
  ORGANISM  Haloarcula onubensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4288122)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halomicroarcula sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4288122)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOS000000000.1.
            The Haloarcula onubensis whole genome shotgun (WGS) project has the
            project accession NZ_JAMQOS000000000.  This version of the project
            (01) has the accession number NZ_JAMQOS010000000, and consists of
            sequences JAMQOS010000001-JAMQOS010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 437.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031624605.1-RS_2025_03_03
            Annotation Date                   :: 03/03/2025 04:14:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,426
            CDSs (total)                      :: 4,345
            Genes (coding)                    :: 4,302
            CDSs (with protein)               :: 4,302
            Genes (RNA)                       :: 81
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 13 of 43
            Pseudo Genes (incomplete)         :: 31 of 43
            Pseudo Genes (internal stop)      :: 7 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288122
                     /organism="Haloarcula onubensis"
                     /mol_type="genomic DNA"
                     /strain="S3CR25-11"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halomicroarcula onubensis"
                     /db_xref="taxon:2950539"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
WGS         JAMQOS010000001-JAMQOS010000014
WGS_SCAFLD  NZ_JAMQOS010000001-NZ_JAMQOS010000014
//
LOCUS       NZ_JBLVWA010000000   4076799 bp    DNA     linear   BCT 06-MAR-2025
DEFINITION  Methanosarcina mazei strain OFF1024, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBLVWA000000000
VERSION     NZ_JBLVWA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46863130
            Assembly: GCF_048285915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina mazei
  ORGANISM  Methanosarcina mazei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 4076799)
  AUTHORS   Prathaban,M., Sobanaa,M., Prathiviraj,R., Hari Krishna Kumar,S.,
            Selvin,J. and Seghal Kiran,G.
  TITLE     Methanosarcina isolated from paddy field applied with organic
            fertilizers
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4076799)
  AUTHORS   Prathaban,M., Sobanaa,M., Prathiviraj,R., Hari Krishna Kumar,S.,
            Selvin,J. and Seghal Kiran,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-FEB-2025) Microbiology, Pondicherry University,
            Kalapet, Pondicherry, Pondicherry 605014, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLVWA000000000.1.
            The Methanosarcina mazei whole genome shotgun (WGS) project has the
            project accession NZ_JBLVWA000000000.  This version of the project
            (01) has the accession number NZ_JBLVWA010000000, and consists of
            sequences JBLVWA010000001-JBLVWA010000260.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Pondicherry University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. September-2024
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048285915.1-RS_2025_03_03
            Annotation Date                   :: 03/03/2025 15:48:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,549
            CDSs (total)                      :: 3,497
            Genes (coding)                    :: 3,392
            CDSs (with protein)               :: 3,392
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 18 of 105
            Pseudo Genes (incomplete)         :: 87 of 105
            Pseudo Genes (internal stop)      :: 17 of 105
            Pseudo Genes (multiple problems)  :: 14 of 105
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076799
                     /organism="Methanosarcina mazei"
                     /mol_type="genomic DNA"
                     /strain="OFF1024"
                     /isolation_source="Paddy field sediments"
                     /db_xref="taxon:2209"
                     /geo_loc_name="India: Pondicherry"
                     /collection_date="2025-01-25"
                     /collected_by="Prathaban Muniamy"
WGS         JBLVWA010000001-JBLVWA010000260
WGS_SCAFLD  NZ_JBLVWA010000001-NZ_JBLVWA010000260
//
LOCUS       NZ_JBLWMN010000000   3109751 bp    DNA     linear   BCT 06-MAR-2025
DEFINITION  Halorubrum sp. DTA98, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLWMN000000000
VERSION     NZ_JBLWMN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47086565
            Assembly: GCF_048380895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. DTA98
  ORGANISM  Halorubrum sp. DTA98
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3109751)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3109751)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLWMN000000000.1.
            The Halorubrum sp. DTA98 whole genome shotgun (WGS) project has the
            project accession NZ_JBLWMN000000000.  This version of the project
            (01) has the accession number NZ_JBLWMN010000000, and consists of
            sequences JBLWMN010000001-JBLWMN010000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048380895.1-RS_2025_03_05
            Annotation Date                   :: 03/05/2025 18:39:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,107
            CDSs (total)                      :: 3,049
            Genes (coding)                    :: 3,003
            CDSs (with protein)               :: 3,003
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 15 of 46
            Pseudo Genes (incomplete)         :: 34 of 46
            Pseudo Genes (internal stop)      :: 3 of 46
            Pseudo Genes (multiple problems)  :: 6 of 46
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109751
                     /organism="Halorubrum sp. DTA98"
                     /mol_type="genomic DNA"
                     /strain="DTA98"
                     /isolation_source="coastal saline-alkali land"
                     /db_xref="taxon:3402163"
                     /geo_loc_name="China"
                     /collection_date="2018-10"
WGS         JBLWMN010000001-JBLWMN010000040
WGS_SCAFLD  NZ_JBLWMN010000001-NZ_JBLWMN010000040
//
LOCUS       NZ_JBLWMM010000000   3320909 bp    DNA     linear   BCT 06-MAR-2025
DEFINITION  Halorubrum sp. DTA46, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLWMM000000000
VERSION     NZ_JBLWMM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47083785
            Assembly: GCF_048381195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. DTA46
  ORGANISM  Halorubrum sp. DTA46
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3320909)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3320909)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLWMM000000000.1.
            The Halorubrum sp. DTA46 whole genome shotgun (WGS) project has the
            project accession NZ_JBLWMM000000000.  This version of the project
            (01) has the accession number NZ_JBLWMM010000000, and consists of
            sequences JBLWMM010000001-JBLWMM010000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048381195.1-RS_2025_03_05
            Annotation Date                   :: 03/05/2025 18:43:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,307
            CDSs (total)                      :: 3,252
            Genes (coding)                    :: 3,221
            CDSs (with protein)               :: 3,221
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 9 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 6 of 31
            Pseudo Genes (multiple problems)  :: 5 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320909
                     /organism="Halorubrum sp. DTA46"
                     /mol_type="genomic DNA"
                     /strain="DTA46"
                     /isolation_source="coastal saline-alkali land"
                     /db_xref="taxon:3402162"
                     /geo_loc_name="China"
                     /collection_date="2018-10"
WGS         JBLWMM010000001-JBLWMM010000010
WGS_SCAFLD  NZ_JBLWMM010000001-NZ_JBLWMM010000010
//
LOCUS       NZ_JAYEZM010000000   3175712 bp    DNA     linear   BCT 07-MAR-2025
DEFINITION  Natronomonas amylolytica strain YCN58, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYEZM000000000
VERSION     NZ_JAYEZM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38877309
            Assembly: GCF_037031205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronomonas amylolytica
  ORGANISM  Natronomonas amylolytica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 3175712)
  AUTHORS   Cui,H.-L.
  TITLE     Natronomonas amylolytica sp. nov., isolated from an inland salt
            lake
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3175712)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2023) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYEZM000000000.1.
            The Natronomonas amylolytica whole genome shotgun (WGS) project has
            the project accession NZ_JAYEZM000000000.  This version of the
            project (01) has the accession number NZ_JAYEZM010000000, and
            consists of sequences JAYEZM010000001-JAYEZM010000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 108.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037031205.1-RS_2025_03_07
            Annotation Date                   :: 03/07/2025 03:51:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,374
            CDSs (total)                      :: 3,325
            Genes (coding)                    :: 3,259
            CDSs (with protein)               :: 3,259
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 16 of 66
            Pseudo Genes (incomplete)         :: 54 of 66
            Pseudo Genes (internal stop)      :: 6 of 66
            Pseudo Genes (multiple problems)  :: 9 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175712
                     /organism="Natronomonas amylolytica"
                     /mol_type="genomic DNA"
                     /strain="YCN58"
                     /isolation_source="sediment"
                     /type_material="type strain of Natronomonas amylolytica"
                     /db_xref="taxon:3108498"
                     /geo_loc_name="China: Shanxi"
                     /collection_date="2012-09"
WGS         JAYEZM010000001-JAYEZM010000018
WGS_SCAFLD  NZ_JAYEZM010000001-NZ_JAYEZM010000018
//
LOCUS       NZ_JAYEZN010000000   3580817 bp    DNA     linear   BCT 07-MAR-2025
DEFINITION  Halorientalis halophila strain LT38, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYEZN000000000
VERSION     NZ_JAYEZN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38878123
            Assembly: GCF_037031225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis halophila
  ORGANISM  Halorientalis halophila
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1  (bases 1 to 3580817)
  AUTHORS   Cui,H.-L.
  TITLE     Halorientalis halophila sp. nov., isolated from an inland
            saline-alkali soli
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3580817)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2023) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYEZN000000000.1.
            The Halorientalis halophila whole genome shotgun (WGS) project has
            the project accession NZ_JAYEZN000000000.  This version of the
            project (01) has the accession number NZ_JAYEZN010000000, and
            consists of sequences JAYEZN010000001-JAYEZN010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 161.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037031225.1-RS_2025_03_07
            Annotation Date                   :: 03/07/2025 03:52:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,713
            CDSs (total)                      :: 3,661
            Genes (coding)                    :: 3,643
            CDSs (with protein)               :: 3,643
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 3 of 18
            Pseudo Genes (incomplete)         :: 13 of 18
            Pseudo Genes (internal stop)      :: 3 of 18
            Pseudo Genes (multiple problems)  :: 1 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3580817
                     /organism="Halorientalis halophila"
                     /mol_type="genomic DNA"
                     /strain="LT38"
                     /isolation_source="sediment"
                     /type_material="type strain of Halorientalis halophila"
                     /db_xref="taxon:3108499"
                     /geo_loc_name="China: Xinjiang"
                     /collection_date="2013-10"
WGS         JAYEZN010000001-JAYEZN010000002
WGS_SCAFLD  NZ_JAYEZN010000001-NZ_JAYEZN010000002
//
LOCUS       NZ_JAYEZL010000000   3254117 bp    DNA     linear   BCT 07-MAR-2025
DEFINITION  Halobacterium yunchengense strain YCN1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYEZL000000000
VERSION     NZ_JAYEZL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38877003
            Assembly: GCF_037031165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium yunchengense
  ORGANISM  Halobacterium yunchengense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 3254117)
  AUTHORS   Cui,H.-L.
  TITLE     Halobacterium yunchengense sp. nov., isolated from an inland salt
            lake
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3254117)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2023) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYEZL000000000.1.
            The Halobacterium yunchengense whole genome shotgun (WGS) project
            has the project accession NZ_JAYEZL000000000.  This version of the
            project (01) has the accession number NZ_JAYEZL010000000, and
            consists of sequences JAYEZL010000001-JAYEZL010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 170.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037031165.1-RS_2025_03_07
            Annotation Date                   :: 03/07/2025 03:52:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,358
            CDSs (total)                      :: 3,305
            Genes (coding)                    :: 3,288
            CDSs (with protein)               :: 3,288
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 12 of 17
            Pseudo Genes (internal stop)      :: 0 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3254117
                     /organism="Halobacterium yunchengense"
                     /mol_type="genomic DNA"
                     /strain="YCN1"
                     /isolation_source="sediment"
                     /type_material="type strain of Halobacterium yunchengense"
                     /db_xref="taxon:3108497"
                     /geo_loc_name="China: Shanxi"
                     /collection_date="2012-09"
WGS         JAYEZL010000001-JAYEZL010000007
WGS_SCAFLD  NZ_JAYEZL010000001-NZ_JAYEZL010000007
//
LOCUS       NZ_JBAOHY010000000   3291634 bp    DNA     linear   ENV 08-MAR-2025
DEFINITION  MAG: Methanothrix soehngenii isolate AS_Ams2_Bin29, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAOHY000000000
VERSION     NZ_JBAOHY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40199671
            Assembly: GCF_037045625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix soehngenii (activated sludge metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 3291634)
  AUTHORS   Roothans,N., Pabst,M., Van Diemen,M., Herrera Mexicano,C.,
            Zandvoort,M., Abeel,T., Van Loosdrecht,M.C.M. and Laureni,M.
  TITLE     Microbial ecology underlying WWTP nitrous oxide emissions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3291634)
  AUTHORS   Roothans,N., Pabst,M., Van Diemen,M., Herrera Mexicano,C.,
            Zandvoort,M., Abeel,T., Van Loosdrecht,M.C.M. and Laureni,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2024) Biotechnology, Technische Universiteit
            Delft, van der Maasweg 9, Delft 2629HZ, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAOHY000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_JBAOHY000000000.  This version of the
            project (01) has the accession number NZ_JBAOHY010000000, and
            consists of sequences JBAOHY010000001-JBAOHY010000067.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MetaFlye v. 2.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4.8x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037045625.1-RS_2025_03_08
            Annotation Date                   :: 03/08/2025 04:51:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,580
            CDSs (total)                      :: 3,519
            Genes (coding)                    :: 3,368
            CDSs (with protein)               :: 3,368
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 89 of 151
            Pseudo Genes (incomplete)         :: 73 of 151
            Pseudo Genes (internal stop)      :: 12 of 151
            Pseudo Genes (multiple problems)  :: 22 of 151
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291634
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="AS_Ams2_Bin29"
                     /isolation_source="activated sludge"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="Netherlands: Amsterdam"
                     /lat_lon="52.398514 N 4.793328 E"
                     /collection_date="2021-06-09"
                     /metagenome_source="activated sludge metagenome"
                     /metagenomic
WGS         JBAOHY010000001-JBAOHY010000067
WGS_SCAFLD  NZ_JBAOHY010000001-NZ_JBAOHY010000067
//
LOCUS       NZ_JANUCR010000000   1857959 bp    DNA     linear   BCT 09-MAR-2025
DEFINITION  Methanococcus voltae strain C2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUCR000000000
VERSION     NZ_JANUCR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18259938
            Assembly: GCF_024807655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus voltae
  ORGANISM  Methanococcus voltae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1857959)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1857959)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUCR000000000.1.
            The Methanococcus voltae whole genome shotgun (WGS) project has the
            project accession NZ_JANUCR000000000.  This version of the project
            (01) has the accession number NZ_JANUCR010000000, and consists of
            sequences JANUCR010000001-JANUCR010000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 675.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024807655.1-RS_2025_03_09
            Annotation Date                   :: 03/09/2025 01:49:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,701
            CDSs (total)                      :: 1,658
            Genes (coding)                    :: 1,654
            CDSs (with protein)               :: 1,654
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 4 of 4
            Pseudo Genes (internal stop)      :: 0 of 4
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857959
                     /organism="Methanococcus voltae"
                     /mol_type="genomic DNA"
                     /strain="C2"
                     /db_xref="taxon:2188"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JANUCR010000001-JANUCR010000018
WGS_SCAFLD  NZ_JANUCR010000001-NZ_JANUCR010000018
//
LOCUS       NZ_JAHLKM010000000   3213887 bp    DNA     linear   BCT 09-MAR-2025
DEFINITION  Natronomonas aquatica strain F2-12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAHLKM000000000
VERSION     NZ_JAHLKM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19487687
            Assembly: GCF_024449025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronomonas aquatica
  ORGANISM  Natronomonas aquatica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 3213887)
  AUTHORS   Garcia-Roldan,A., Duran-Viseras,A., de la Haba,R.R., Corral,P.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Genomic-based phylogenetic and metabolic analyses of the genus
            Natronomonas, and description of Natronomonas aquatica sp. nov
  JOURNAL   Front Microbiol 14 (2023)
  REMARK    DOI: 10.3389/fmicb.2023.1109549
REFERENCE   2  (bases 1 to 3213887)
  AUTHORS   Garcia-Roldan,A., Duran-Viseras,A., de la Haba,R.R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUN-2021) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHLKM000000000.1.
            The Natronomonas aquatica whole genome shotgun (WGS) project has
            the project accession NZ_JAHLKM000000000.  This version of the
            project (01) has the accession number NZ_JAHLKM010000000, and
            consists of sequences JAHLKM010000001-JAHLKM010000082.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from CECT 9970, JCM 33798, CCM
            9001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 568.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024449025.1-RS_2025_03_09
            Annotation Date                   :: 03/09/2025 01:47:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,378
            CDSs (total)                      :: 3,325
            Genes (coding)                    :: 3,219
            CDSs (with protein)               :: 3,219
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 29 of 106
            Pseudo Genes (incomplete)         :: 84 of 106
            Pseudo Genes (internal stop)      :: 15 of 106
            Pseudo Genes (multiple problems)  :: 18 of 106
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3213887
                     /organism="Natronomonas aquatica"
                     /mol_type="genomic DNA"
                     /strain="F2-12"
                     /isolation_source="saline water"
                     /type_material="type strain of Natronomonas aquatica"
                     /db_xref="taxon:2841590"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06"
WGS         JAHLKM010000001-JAHLKM010000082
WGS_SCAFLD  NZ_JAHLKM010000001-NZ_JAHLKM010000082
//
LOCUS       NZ_JAZAQL010000000   4591014 bp    DNA     linear   BCT 09-MAR-2025
DEFINITION  Halorubellus litoreus strain GX26, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAZAQL000000000
VERSION     NZ_JAZAQL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39526644
            Assembly: GCF_037081675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubellus litoreus
  ORGANISM  Halorubellus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Halorubellus.
REFERENCE   1  (bases 1 to 4591014)
  AUTHORS   Cui,H.L., Mou,Y.Z., Yang,X., Zhou,Y.G., Liu,H.C. and Zhou,P.J.
  TITLE     Halorubellus salinus gen. nov., sp. nov. and Halorubellus litoreus
            sp. nov., novel halophilic archaea isolated from a marine solar
            saltern
  JOURNAL   Syst Appl Microbiol 35 (1), 30-34 (2012)
   PUBMED   21889861
REFERENCE   2  (bases 1 to 4591014)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZAQL000000000.1.
            The Halorubellus litoreus whole genome shotgun (WGS) project has
            the project accession NZ_JAZAQL000000000.  This version of the
            project (01) has the accession number NZ_JAZAQL010000000, and
            consists of sequences JAZAQL010000001-JAZAQL010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 168.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037081675.1-RS_2025_03_09
            Annotation Date                   :: 03/09/2025 05:34:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,428
            CDSs (total)                      :: 4,374
            Genes (coding)                    :: 4,335
            CDSs (with protein)               :: 4,335
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 12 of 39
            Pseudo Genes (incomplete)         :: 26 of 39
            Pseudo Genes (internal stop)      :: 10 of 39
            Pseudo Genes (multiple problems)  :: 9 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4591014
                     /organism="Halorubellus litoreus"
                     /mol_type="genomic DNA"
                     /strain="GX26"
                     /isolation_source="sediment"
                     /type_material="type strain of Halorubellus litoreus"
                     /db_xref="taxon:755308"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2009-02"
WGS         JAZAQL010000001-JAZAQL010000009
WGS_SCAFLD  NZ_JAZAQL010000001-NZ_JAZAQL010000009
//
LOCUS       NZ_JBCAUS010000000   2310830 bp    DNA     linear   BCT 09-MAR-2025
DEFINITION  Methanococcoides cohabitans strain LMO-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBCAUS000000000
VERSION     NZ_JBCAUS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40704557
            Assembly: GCF_038432375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides cohabitans
  ORGANISM  Methanococcoides cohabitans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1  (bases 1 to 2310830)
  AUTHORS   Liang,L.
  TITLE     Methanococcoides sp. LMO-2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2310830)
  AUTHORS   Liang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2024) School of Oceanography, Shanghai Jiao Tong
            University, 800 Dongchuan Road, Shanghai 200240, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBCAUS000000000.1.
            The Methanococcoides cohabitans whole genome shotgun (WGS) project
            has the project accession NZ_JBCAUS000000000.  This version of the
            project (01) has the accession number NZ_JBCAUS010000000, and
            consists of sequences JBCAUS010000001-JBCAUS010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 590.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038432375.1-RS_2025_03_09
            Annotation Date                   :: 03/09/2025 19:09:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,325
            CDSs (total)                      :: 2,262
            Genes (coding)                    :: 2,242
            CDSs (with protein)               :: 2,242
            Genes (RNA)                       :: 63
            rRNAs                             :: 5, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 1 of 20
            Pseudo Genes (incomplete)         :: 6 of 20
            Pseudo Genes (internal stop)      :: 15 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310830
                     /organism="Methanococcoides cohabitans"
                     /mol_type="genomic DNA"
                     /strain="LMO-2"
                     /isolation_source="Marine enrichment culture"
                     /type_material="type strain of Methanococcoides
                     cohabitans"
                     /db_xref="taxon:3136559"
                     /geo_loc_name="USA: Gulf of Mexico"
                     /collection_date="2003-10-12"
WGS         JBCAUS010000001-JBCAUS010000014
WGS_SCAFLD  NZ_JBCAUS010000001-NZ_JBCAUS010000014
//
LOCUS       NZ_JABGBP010000000   1814146 bp    DNA     linear   BCT 15-MAR-2025
DEFINITION  Ferroplasma acidiphilum strain DSM 28986, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABGBP000000000
VERSION     NZ_JABGBP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14829145
            Assembly: GCF_013133875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ferroplasma acidiphilum
  ORGANISM  Ferroplasma acidiphilum
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma.
REFERENCE   1  (bases 1 to 1814146)
  AUTHORS   Zhang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2020) Geomicrobiology, Federal Institute for
            Geosciences and Natural Resources, Stilleweg 2, Hannover, NS 30655,
            Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABGBP000000000.1.
            The Ferroplasma acidiphilum whole genome shotgun (WGS) project has
            the project accession NZ_JABGBP000000000.  This version of the
            project (01) has the accession number NZ_JABGBP010000000, and
            consists of sequences JABGBP010000001-JABGBP010000443.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Geomicrobiology Unit,
            Federal Institute for Geosciences and Natural Resources, 30655
            Hannover, Germany.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 132.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013133875.1-RS_2025_03_15
            Annotation Date                   :: 03/15/2025 02:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,033
            CDSs (total)                      :: 1,983
            Genes (coding)                    :: 1,902
            CDSs (with protein)               :: 1,902
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 0 of 81
            Pseudo Genes (incomplete)         :: 81 of 81
            Pseudo Genes (internal stop)      :: 1 of 81
            Pseudo Genes (multiple problems)  :: 1 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814146
                     /organism="Ferroplasma acidiphilum"
                     /mol_type="genomic DNA"
                     /strain="DSM 28986"
                     /isolation_source="Bioreactor treating cobaltiferous
                     pyrite"
                     /culture_collection="DSM:28986"
                     /db_xref="taxon:74969"
                     /geo_loc_name="France"
                     /collection_date="2008"
WGS         JABGBP010000001-JABGBP010000443
WGS_SCAFLD  NZ_JABGBP010000001-NZ_JABGBP010000443
//
LOCUS       NZ_CALUOI010000000   1577041 bp    DNA     linear   ENV 24-MAR-2025
DEFINITION  MAG: Methanobrevibacter woesei isolate BRZ_ML__bin14, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CALUOI000000000
VERSION     NZ_CALUOI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110133892
            Assembly: GCF_944322235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter woesei (chicken gut metagenome)
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1577041)
  AUTHORS   Pons,N.
  CONSRTM   INRAE-MetaGenoPolis
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) INRA-META, METAGENOPOLIS, Domaine de
            Vilvert, 78352 JOUY-EN-JOSAS, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALUOI000000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_CALUOI000000000.  This version of the
            project (01) has the accession number NZ_CALUOI010000000, and
            consists of sequences CALUOI010000001-CALUOI010000006.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_944322235.1-RS_2025_03_24
            Annotation Date                   :: 03/24/2025 02:20:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,681
            CDSs (total)                      :: 1,643
            Genes (coding)                    :: 1,635
            CDSs (with protein)               :: 1,635
            Genes (RNA)                       :: 38
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 2 of 8
            Pseudo Genes (incomplete)         :: 5 of 8
            Pseudo Genes (internal stop)      :: 2 of 8
            Pseudo Genes (multiple problems)  :: 1 of 8
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577041
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /isolate="BRZ_ML__bin14"
                     /isolation_source="chicken caecal content"
                     /db_xref="taxon:190976"
                     /environmental_sample
                     /metagenome_source="chicken gut metagenome"
                     /metagenomic
WGS         CALUOI010000001-CALUOI010000006
WGS_SCAFLD  NZ_CALUOI010000001-NZ_CALUOI010000006
//
LOCUS       NZ_CAJYDL010000000   2859498 bp    DNA     linear   ENV 24-MAR-2025
DEFINITION  MAG: Methanothrix soehngenii isolate UFZ-4H12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJYDL000000000
VERSION     NZ_CAJYDL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA9542886
            Assembly: GCF_913757535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix soehngenii (metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2859498)
  AUTHORS   Popp,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-AUG-2021) HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH
            - UFZ., Environmental Microbiology, Permoserstr. 15, 04318 Leipzig,
            Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJYDL000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_CAJYDL000000000.  This version of the
            project (01) has the accession number NZ_CAJYDL010000000, and
            consists of sequences CAJYDL010000001-CAJYDL010000003.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_913757535.1-RS_2025_03_24
            Annotation Date                   :: 03/24/2025 02:35:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,908
            CDSs (total)                      :: 2,852
            Genes (coding)                    :: 2,797
            CDSs (with protein)               :: 2,797
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 27 of 55
            Pseudo Genes (incomplete)         :: 37 of 55
            Pseudo Genes (internal stop)      :: 8 of 55
            Pseudo Genes (multiple problems)  :: 15 of 55
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859498
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="UFZ-4H12"
                     /isolation_source="Biogas reactor"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /metagenome_source="metagenome"
                     /metagenomic
WGS         CAJYDL010000001-CAJYDL010000003
WGS_SCAFLD  NZ_CAJYDL010000001-NZ_CAJYDL010000003
//
LOCUS       NZ_CBDCVU010000000   1852188 bp    DNA     linear   ENV 24-MAR-2025
DEFINITION  MAG: Nitrosopumilus sp. isolate
            d0d8156c-2fb4-46ba-bb7a-8f569bbeb246, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBDCVU000000000
VERSION     NZ_CBDCVU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115926047
            Sequence Read Archive: ERR12875167, ERR12875168, ERR12875169,
            ERR12875170, ERR12893010
            Assembly: GCF_965223225.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (annelid metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1852188)
  CONSRTM   Wellcome Sanger Tree of Life Programme
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2025) WELLCOME SANGER INSTITUTE, Tree of Life,
            Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBDCVU000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBDCVU000000000.  This version of the project
            (01) has the accession number NZ_CBDCVU010000000, and consists of
            sequences CBDCVU010000001-CBDCVU010000004.
            The metagenome-assembled genome assembly
            wgTheLage1.Nitrosopumilus_sp_6.1 is based on 58x PacBio data
            generated by the Aquatic Symbiosis Genomics Project
            (https://www.aquaticsymbiosisgenomics.org/). The assembly process
            included the following sequence of steps: initial PacBio assembly
            generation with metaMDBG and coverage-, graph-, and HiC-based
            contig binning.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965223225.1-RS_2025_03_24
            Annotation Date                   :: 03/24/2025 12:14:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,292
            CDSs (total)                      :: 2,241
            Genes (coding)                    :: 2,231
            CDSs (with protein)               :: 2,231
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 2 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852188
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="d0d8156c-2fb4-46ba-bb7a-8f569bbeb246"
                     /isolation_source="Annelid: Themiste lageniformis"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2021-07-01"
                     /metagenome_source="annelid metagenome"
                     /metagenomic
WGS         CBDCVU010000001-CBDCVU010000004
WGS_SCAFLD  NZ_CBDCVU010000001-NZ_CBDCVU010000004
//
LOCUS       NZ_JFZT01000000      2454023 bp    DNA     linear   BCT 28-MAR-2025
DEFINITION  Candidatus Acidianus copahuensis strain ALE1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JFZT00000000
VERSION     NZ_JFZT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02679956
            Assembly: GCF_000632495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Acidianus copahuensis
  ORGANISM  Candidatus Acidianus copahuensis
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Acidianus.
REFERENCE   1  (bases 1 to 2454023)
  AUTHORS   Urbieta,M.S., Rascovan,N., Castro,C., Revale,S., Giaveno,M.A.,
            Vazquez,M. and Donati,E.R.
  TITLE     Draft Genome Sequence of the Novel Thermoacidophilic Archaeon
            Acidianus copahuensis Strain ALE1, Isolated from the Copahue
            Volcanic Area in Neuquen, Argentina
  JOURNAL   Genome Announc 2 (3), e00259-14 (2014)
   PUBMED   24812211
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454023)
  AUTHORS   Urbieta,M.S., Rascovan,N. and Revale,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2014) Genomics and Bioinformatics, INDEAR, Ocampo
            210 bis - Predio CCT, Rosario, Santa Fe 2000, Argentina
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JFZT00000000.1.
            The Candidatus Acidianus copahuensis whole genome shotgun (WGS)
            project has the project accession NZ_JFZT00000000.  This version of
            the project (01) has the accession number NZ_JFZT01000000, and
            consists of sequences JFZT01000001-JFZT01000068.
            Bacteria and source DNA available from: Edgardo R. Donati Ph.D.,
            Centro de Investigacion y Desarrollo en  Fermentaciones
            Industriales (CINDEFI). Facultad de Ciencias Exactas (UNLP) 50 y
            115, La Plata (B1900AJL), Buenos Aires, Argentina.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-OCT-2013
            Assembly Method       :: Celera Assembler v. 7.0
            Assembly Name         :: AciCop1.0
            Genome Coverage       :: 52.0x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000632495.1-RS_2025_03_28
            Annotation Date                   :: 03/28/2025 01:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,559
            CDSs (total)                      :: 2,502
            Genes (coding)                    :: 2,454
            CDSs (with protein)               :: 2,454
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 15 of 48
            Pseudo Genes (incomplete)         :: 33 of 48
            Pseudo Genes (internal stop)      :: 4 of 48
            Pseudo Genes (multiple problems)  :: 4 of 48
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454023
                     /organism="Candidatus Acidianus copahuensis"
                     /mol_type="genomic DNA"
                     /strain="ALE1"
                     /isolation_source="hot springs"
                     /db_xref="taxon:1160895"
                     /geo_loc_name="Argentina: Copahue, Neuquen"
                     /lat_lon="37.816611 S 71.096811 W"
                     /altitude="2000 m"
                     /collection_date="2011"
                     /collected_by="Alejandra Giavenno"
                     /identified_by="Alejandra Giavenno"
WGS         JFZT01000001-JFZT01000068
WGS_SCAFLD  NZ_JFZT01000001-NZ_JFZT01000068
//
LOCUS       NZ_AHJG01000000      1855559 bp    DNA     linear   BCT 28-MAR-2025
DEFINITION  Candidatus Nitrosarchaeum limnium BG20, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AHJG00000000
VERSION     NZ_AHJG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00016663
            Assembly: GCF_000241145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosarchaeum limnium BG20
  ORGANISM  Candidatus Nitrosarchaeum limnium BG20
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosarchaeum.
REFERENCE   1  (bases 1 to 1855559)
  AUTHORS   Mosier,A.C., Allen,E.E., Kim,M., Ferriera,S. and Francis,C.A.
  TITLE     Genome sequence of 'Candidatus Nitrosoarchaeum limnia' BG20, a
            low-salinity ammonia-oxidizing archaeon from the San Francisco Bay
            estuary
  JOURNAL   J Bacteriol 194 (8), 2119-2120 (2012)
   PUBMED   22461554
REFERENCE   2  (bases 1 to 1855559)
  AUTHORS   Francis,C., Mosier,A., Ferriera,S., Johnson,J., Kim,M.,
            Montgomery,R., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H.,
            Friedman,R., Frazier,M. and Venter,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2012) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
  REMARK    Amino acid sequence updated by submitter
REFERENCE   3  (bases 1 to 1855559)
  AUTHORS   Francis,C., Mosier,A.C., Ferriera,S., Johnson,J., Kim,M.,
            Montgomery,R., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H.,
            Friedman,R., Frazier,M. and Venter,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2011) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHJG00000000.1.
            The Candidatus Nitrosarchaeum limnium BG20 whole genome shotgun
            (WGS) project has the project accession NZ_AHJG00000000.  This
            version of the project (01) has the accession number
            NZ_AHJG01000000, and consists of sequences
            AHJG01000001-AHJG01000343.
            With funding from the Gordon and Betty Moore Foundation
            (www.moore.org), the J. Craig Venter Institute (www.jcvi.org) is
            sequencing, assembling, and auto-annotating the genomes of
            approximately 165 marine microbes. These microbes were contributed
            by collaborators worldwide, and embody an array of physiological
            diversity, including carbon fixers, photoautotrophs,
            photoheterotrophs, nitrifiers, and methanotrophs. This work was
            designed to complement other ongoing research at JCVI and elsewhere
            to characterize the microbial biodiversity of marine and
            terrestrial environments through metagenomics profiling of
            environmental samples.
            
            Annotation was added to the contigs in June 2013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.23
            Genome Coverage       :: 125.36x
            Sequencing Technology :: 454 Fragment
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000241145.1-RS_2025_03_28
            Annotation Date                   :: 03/28/2025 01:09:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,488
            CDSs (total)                      :: 2,439
            Genes (coding)                    :: 2,276
            CDSs (with protein)               :: 2,276
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 48 of 163
            Pseudo Genes (incomplete)         :: 119 of 163
            Pseudo Genes (internal stop)      :: 1 of 163
            Pseudo Genes (multiple problems)  :: 5 of 163
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1855559
                     /organism="Candidatus Nitrosarchaeum limnium BG20"
                     /mol_type="genomic DNA"
                     /strain="BG20"
                     /isolation_source="surficial sediments beneath a 12-ft
                     water column from coastal/estuarine sediments"
                     /db_xref="taxon:859192"
                     /geo_loc_name="USA: CA"
WGS         AHJG01000001-AHJG01000343
WGS_SCAFLD  NZ_AHJG01000001-NZ_AHJG01000343
//
LOCUS       NZ_WFIY01000000      2222414 bp    DNA     linear   BCT 28-MAR-2025
DEFINITION  Acidianus infernus strain DSM 3191, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WFIY00000000
VERSION     NZ_WFIY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09933090
            Assembly: GCF_009729545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidianus infernus
  ORGANISM  Acidianus infernus
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Acidianus.
REFERENCE   1  (bases 1 to 2222414)
  AUTHORS   Counts,J.A. and Kelly,R.M.
  TITLE     Genome Sequences from Six Type Strain Members of the Archaeal
            Family Sulfolobaceae: Acidianus ambivalens, Acidianus infernus,
            Metallosphaera prunae, Stygiolobus azoricus, Sulfolobus metallicus,
            and Sulfurisphaera ohwakuensis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2222414)
  AUTHORS   Counts,J.A. and Kelly,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2019) Chemical and Biomolecular Engineering,
            North Carolina State University, 840 Main Campus Drive, Raleigh, NC
            27606, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WFIY00000000.1.
            The Acidianus infernus whole genome shotgun (WGS) project has the
            project accession NZ_WFIY00000000.  This version of the project
            (01) has the accession number NZ_WFIY01000000, and consists of
            sequences WFIY01000001-WFIY01000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-JUL-2019
            Assembly Method        :: Flye v. 2.4.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 348x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009729545.1-RS_2025_03_28
            Annotation Date                   :: 03/28/2025 04:11:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,475
            CDSs (total)                      :: 2,424
            Genes (coding)                    :: 2,367
            CDSs (with protein)               :: 2,367
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 33 of 57
            Pseudo Genes (incomplete)         :: 41 of 57
            Pseudo Genes (internal stop)      :: 13 of 57
            Pseudo Genes (multiple problems)  :: 27 of 57
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222414
                     /organism="Acidianus infernus"
                     /mol_type="genomic DNA"
                     /strain="DSM 3191"
                     /isolation_source="fissure at Pisciarelli solfatara near
                     Naples, Italy"
                     /culture_collection="DSM:3191"
                     /type_material="type strain of Acidianus infernus"
                     /db_xref="taxon:12915"
                     /geo_loc_name="Italy: Pisciarelli Solfatara, Naples"
                     /collection_date="1985-01-17"
WGS         WFIY01000001-WFIY01000004
WGS_SCAFLD  NZ_WFIY01000001-NZ_WFIY01000004
//
LOCUS       NZ_LNTB01000000      1621727 bp    DNA     linear   BCT 28-MAR-2025
DEFINITION  Pyrodictium occultum strain PL-19, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LNTB00000000
VERSION     NZ_LNTB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03154506
            Assembly: GCF_001462395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrodictium occultum
  ORGANISM  Pyrodictium occultum
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Pyrodictiaceae; Pyrodictium.
REFERENCE   1  (bases 1 to 1621727)
  AUTHORS   Utturkar,S.M., Huber,H., Leptihn,S., Loh,B., Brown,S.D.,
            Stetter,K.O. and Podar,M.
  TITLE     Draft Genome Sequence of Pyrodictium occultum PL19T, a Marine
            Hyperthermophilic Species of Archaea That Grows Optimally at 105
            degrees C
  JOURNAL   Genome Announc 4 (1), e00016-16 (2016)
   PUBMED   26950321
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621727)
  AUTHORS   Utturkar,S., Huber,H., Leptihn,S., Brown,S., Stetter,K.O. and
            Podar,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2015) Biosciences, Oak Ridge National Laboratory,
            1 Bethel Valley Rd, Oak Ridge, TN 37831, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LNTB00000000.1.
            The Pyrodictium occultum whole genome shotgun (WGS) project has the
            project accession NZ_LNTB00000000.  This version of the project
            (01) has the accession number NZ_LNTB01000000, and consists of
            sequences LNTB01000001-LNTB01000002.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: SPAdes v. 3.1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2500.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001462395.1-RS_2025_03_28
            Annotation Date                   :: 03/28/2025 01:59:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,745
            CDSs (total)                      :: 1,693
            Genes (coding)                    :: 1,685
            CDSs (with protein)               :: 1,685
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 4 of 8
            Pseudo Genes (incomplete)         :: 6 of 8
            Pseudo Genes (internal stop)      :: 1 of 8
            Pseudo Genes (multiple problems)  :: 2 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621727
                     /organism="Pyrodictium occultum"
                     /mol_type="genomic DNA"
                     /strain="PL-19"
                     /isolation_source="marine high temperature sediment"
                     /culture_collection="DSM:2709"
                     /type_material="type strain of Pyrodictium occultum"
                     /db_xref="taxon:2309"
                     /geo_loc_name="Italy: Volcano"
                     /collection_date="1982"
WGS         LNTB01000001-LNTB01000002
WGS_SCAFLD  NZ_LNTB01000001-NZ_LNTB01000002
//
LOCUS       NZ_JAAAJC010000000   3521843 bp    DNA     linear   BCT 28-MAR-2025
DEFINITION  Halococcus salsus strain ZJ1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAAJC000000000
VERSION     NZ_JAAAJC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13783723
            Assembly: GCF_009900715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus salsus
  ORGANISM  Halococcus salsus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 3521843)
  AUTHORS   Chen,S., Sun,S., Xu,Y. and Liu,H.C.
  TITLE     Halococcus salsus sp. nov., a novel halophilic archaeon isolated
            from rock salt
  JOURNAL   Int J Syst Evol Microbiol 68 (12), 3754-3759 (2018)
   PUBMED   30311879
REFERENCE   2  (bases 1 to 3521843)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2020) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAAJC000000000.1.
            The Halococcus salsus whole genome shotgun (WGS) project has the
            project accession NZ_JAAAJC000000000.  This version of the project
            (01) has the accession number NZ_JAAAJC010000000, and consists of
            sequences JAAAJC010000001-JAAAJC010000030.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009900715.1-RS_2025_03_28
            Annotation Date                   :: 03/28/2025 15:14:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,642
            CDSs (total)                      :: 3,588
            Genes (coding)                    :: 3,509
            CDSs (with protein)               :: 3,509
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 30 of 79
            Pseudo Genes (incomplete)         :: 64 of 79
            Pseudo Genes (internal stop)      :: 14 of 79
            Pseudo Genes (multiple problems)  :: 24 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521843
                     /organism="Halococcus salsus"
                     /mol_type="genomic DNA"
                     /strain="ZJ1"
                     /isolation_source="Salt mine"
                     /type_material="type strain of Halococcus salsus Chen et
                     al."
                     /db_xref="taxon:2162894"
                     /geo_loc_name="China: Yunnan"
                     /lat_lon="22.68 N 101.64 E"
                     /collection_date="2016-09-20"
                     /collected_by="Shaoxing Chen"
WGS         JAAAJC010000001-JAAAJC010000030
WGS_SCAFLD  NZ_JAAAJC010000001-NZ_JAAAJC010000030
//
LOCUS       NZ_JAIOUQ010000000   2662106 bp    DNA     linear   BCT 28-MAR-2025
DEFINITION  Methanobacterium spitsbergense strain VT, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAIOUQ000000000
VERSION     NZ_JAIOUQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21212324
            Assembly: GCF_019931065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium spitsbergense
  ORGANISM  Methanobacterium spitsbergense
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2662106)
  AUTHORS   Trubitsyn,V., Rivkina,E. and Shcherbakova,V.
  TITLE     Draft Genome Sequence of a Methanogenic Archaeon from West
            Spitsbergen Permafrost
  JOURNAL   Microbiol Resour Announc 11 (2), e0093821 (2022)
   PUBMED   35142547
REFERENCE   2  (bases 1 to 2662106)
  AUTHORS   Trubitsyn,V.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2021) Laboratory of Anaerobic Microorganisms,
            IBPM RAS, Prospect Nauki, Pushchino 142290, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIOUQ000000000.1.
            The Methanobacterium spitsbergense whole genome shotgun (WGS)
            project has the project accession NZ_JAIOUQ000000000.  This version
            of the project (01) has the accession number NZ_JAIOUQ010000000,
            and consists of sequences JAIOUQ010000001-JAIOUQ010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from VKM:B-3566.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 17-AUG-2021
            Assembly Method        :: MetaSPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 710.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019931065.1-RS_2025_03_28
            Annotation Date                   :: 03/28/2025 16:03:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,828
            CDSs (total)                      :: 2,778
            Genes (coding)                    :: 2,753
            CDSs (with protein)               :: 2,753
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 6 of 25
            Pseudo Genes (incomplete)         :: 17 of 25
            Pseudo Genes (internal stop)      :: 5 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662106
                     /organism="Methanobacterium spitsbergense"
                     /mol_type="genomic DNA"
                     /strain="VT"
                     /isolation_source="West Spitsbergen permafrost"
                     /culture_collection="VKM:B 3566"
                     /type_material="type strain of Methanobacterium
                     spitsbergense"
                     /db_xref="taxon:2874285"
                     /geo_loc_name="Norway: Svalbard, near Barentsburg"
                     /lat_lon="78.03 N 14.323611 E"
                     /collection_date="2016-09"
                     /identified_by="Vladimir Trubitsyn"
WGS         JAIOUQ010000001-JAIOUQ010000018
WGS_SCAFLD  NZ_JAIOUQ010000001-NZ_JAIOUQ010000018
//
LOCUS       NZ_AUQX01000000      1195112 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Desulfurococcus mucosus DSM 2161, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AUQX00000000
VERSION     NZ_AUQX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03649618
            Assembly: GCF_001006085.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Desulfurococcus mucosus DSM 2161
  ORGANISM  Desulfurococcus mucosus DSM 2161
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1195112)
  AUTHORS   Susanti,D., Johnson,E.F., Lapidus,A., Han,J., Reddy,T.B., Pilay,M.,
            Ivanova,N.N., Markowitz,V.M., Woyke,T., Kyrpides,N.C. and
            Mukhopadhyay,B.
  TITLE     Permanent draft genome sequence of Desulfurococcus mobilis type
            strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon
            isolated from acidic hot springs of Hveravellir, Iceland
  JOURNAL   Stand Genomic Sci 11, 3 (2016)
   PUBMED   26767090
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195112)
  AUTHORS   Mukhopadhyay,B., Huntemann,M., Chen,I.-M., Kyrpides,N.,
            Markowitz,V., Palaniappan,K., Ivanova,N., Andersen,E., Pati,A.,
            Shapiro,N., Cantor,M.N., Woyke,T., Copeland,A., Mikhailova,N.,
            Ovchinnikova,G., Stamatis,D., Reddy,T., Ngan,C.Y., Chovatia,M.,
            Daum,C. and Clum,A.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2015) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AUQX00000000.1.
            The Desulfurococcus mucosus DSM 2161 whole genome shotgun (WGS)
            project has the project accession NZ_AUQX00000000.  This version of
            the project (01) has the accession number NZ_AUQX01000000, and
            consists of sequences AUQX01000001-AUQX01000062.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 400455
            Source DNA and Organism available from Biswarup  Mukhopadhyay
            (biswarup@vt.edu)
            Source DNA available from Biswarup  Mukhopadhyay (biswarup@vt.edu)
            Organism available from Biswarup  Mukhopadhyay (biswarup@vt.edu)
            Contacts: Biswarup  Mukhopadhyay (biswarup@vt.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            assembly            :: ALLPATHS v. R37654
            country             :: Iceland
            environment         :: Fresh water; Aquatic
            investigation_type  :: bacteria_archaea
            project_name        :: Desulfurococcus mobilis DSM 2161
            sequencing_meth     :: WGS
            ref_biomaterial     :: DSM 2161
            biotic_relationship :: Free living
            rel_to_oxygen       :: Anaerobe
            trophic_level       :: Organotroph
            GOLD Stamp ID       :: Gp0003960
            Type Strain         :: Yes
            Funding Program     :: DOE-CSP 2009
            Gene Calling Method :: Prodigal unknown
            Isolation Site      :: Acidic water from solfataric field; Iceland
            Cell Shape          :: Coccus-shaped
            Motility            :: Motile
            Temperature Range   :: Hyperthermophile
            Temperature Optimum :: 85
            Gram Staining       :: Gram-
            Diseases            :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: ALLPATHS v. R37654
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Unknown
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001006085.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 01:35:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,304
            CDSs (total)                      :: 1,257
            Genes (coding)                    :: 1,231
            CDSs (with protein)               :: 1,231
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 0 of 26
            Pseudo Genes (incomplete)         :: 26 of 26
            Pseudo Genes (internal stop)      :: 0 of 26
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195112
                     /organism="Desulfurococcus mucosus DSM 2161"
                     /mol_type="genomic DNA"
                     /strain="DSM 2161"
                     /isolation_source="acidic water from solfataric field"
                     /culture_collection="DSM:2161"
                     /type_material="type strain of Desulfurococcus mobilis"
                     /db_xref="taxon:675631"
                     /geo_loc_name="Iceland"
WGS         AUQX01000001-AUQX01000062
WGS_SCAFLD  NZ_AUQX01000001-NZ_AUQX01000024
WGS_SCAFLD  NZ_AUQX01000027-NZ_AUQX01000038
WGS_SCAFLD  NZ_AUQX01000045-NZ_AUQX01000062
WGS_SCAFLD  NZ_KQ061251-NZ_KQ061254
//
LOCUS       NZ_AFPU01000000      1607695 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Nitrosarchaeum koreense MY1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AFPU00000000
VERSION     NZ_AFPU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470178
            Assembly: GCF_000220175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrosarchaeum koreense MY1
  ORGANISM  Nitrosarchaeum koreense MY1
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosarchaeum.
REFERENCE   1  (bases 1 to 1607695)
  AUTHORS   Buessecker,S., Palmer,M., Lai,D., Dimapilis,J., Mayali,X.,
            Mosier,D., Jiao,J.Y., Colman,D.R., Keller,L.M., St John,E.,
            Miranda,M., Gonzalez,C., Gonzalez,L., Sam,C., Villa,C., Zhuo,M.,
            Bodman,N., Robles,F., Boyd,E.S., Cox,A.D., St Clair,B., Hua,Z.S.,
            Li,W.J., Reysenbach,A.L., Stott,M.B., Weber,P.K., Pett-Ridge,J.,
            Dekas,A.E., Hedlund,B.P. and Dodsworth,J.A.
  TITLE     An essential role for tungsten in the ecology and evolution of a
            previously uncultivated lineage of anaerobic, thermophilic Archaea
  JOURNAL   Nat Commun 13 (1), 3773 (2022)
   PUBMED   35773279
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607695)
  AUTHORS   Kim,B.K., Jung,M.Y., Yu,D.S., Park,S.J., Oh,T.K., Rhee,S.K. and
            Kim,J.F.
  TITLE     Genome sequence of an ammonia-oxidizing soil archaeon, 'Candidatus
            Nitrosoarchaeum koreensis' MY1
  JOURNAL   J Bacteriol 193 (19), 5539-5540 (2011)
   PUBMED   21914867
REFERENCE   3  (bases 1 to 1607695)
  AUTHORS   Kim,B.K. and Kim,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUN-2011) Industrial Biotechnology and Bioenergy
            Research Center, Korea Research Institute of Bioscience and
            Biotechnology, 125 Gwahak-ro Yuseong-gu, Daejeon 305-806, Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AFPU00000000.1.
            The Nitrosarchaeum koreense MY1 whole genome shotgun (WGS) project
            has the project accession NZ_AFPU00000000.  This version of the
            project (01) has the accession number NZ_AFPU01000000, and consists
            of sequence AFPU01000001.
            Source DNA available from Prof. Sung-Keun Rhee at Department of
            Microbiology and Biotechnology Research Institute, Chunbuk National
            University, Korea.
            The first version of this wgs project, AFPU01000000, is an
            incomplete genome of a single contig that is missing sequence to
            close the circular genome.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench v. 4.6.1
            Genome Coverage       :: 1300x
            Sequencing Technology :: Illumina IIx; 454 FLX Titanium
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000220175.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 01:07:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,947
            CDSs (total)                      :: 1,898
            Genes (coding)                    :: 1,896
            CDSs (with protein)               :: 1,896
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 2 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607695
                     /organism="Nitrosarchaeum koreense MY1"
                     /mol_type="genomic DNA"
                     /strain="MY1"
                     /isolation_source="enrichment culture from soil"
                     /type_material="type strain of Nitrosarchaeum koreense"
                     /db_xref="taxon:1001994"
WGS         AFPU01000001
WGS_SCAFLD  NZ_AFPU01000001
//
LOCUS       NZ_RKLV01000000      2103391 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Halorutilus salinus strain F3-133, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RKLV00000000
VERSION     NZ_RKLV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10397913
            Assembly: GCF_026242195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorutilus salinus
  ORGANISM  Halorutilus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halorutilales; Halorutilaceae; Halorutilus.
REFERENCE   1  (bases 1 to 2103391)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Haloadaptaus new haloarchaeum isolated from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2103391)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-SEP-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKLV00000000.1.
            The Halorutilus salinus whole genome shotgun (WGS) project has the
            project accession NZ_RKLV00000000.  This version of the project
            (01) has the accession number NZ_RKLV01000000, and consists of
            sequences RKLV01000001-RKLV01000017.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 504.32x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026242195.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 06:45:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,382
            CDSs (total)                      :: 2,330
            Genes (coding)                    :: 2,291
            CDSs (with protein)               :: 2,291
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 6 of 39
            Pseudo Genes (incomplete)         :: 31 of 39
            Pseudo Genes (internal stop)      :: 4 of 39
            Pseudo Genes (multiple problems)  :: 2 of 39
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2103391
                     /organism="Halorutilus salinus"
                     /mol_type="genomic DNA"
                     /strain="F3-133"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halorutilus salinus"
                     /db_xref="taxon:2487751"
                     /geo_loc_name="Spain: Isla Cristina, Huelva"
                     /collection_date="2016-06"
WGS         RKLV01000001-RKLV01000017
WGS_SCAFLD  NZ_RKLV01000001-NZ_RKLV01000017
//
LOCUS       NZ_RKLW01000000      3926279 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Haloarcula pellucida strain CECT 7537, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RKLW00000000
VERSION     NZ_RKLW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10397914
            Assembly: GCF_019599515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula pellucida
  ORGANISM  Haloarcula pellucida
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3926279)
  AUTHORS   Echigo,A., Minegushi,H., Shimane,Y., Kamekura,M., Itoh,T. and
            Usami,R.
  TITLE     Halomicroarcula pellucida gen. nov., sp. nov., a non-pigmented,
            transparent-colony-forming, halophilic archaeon isolated from solar
            salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3926279)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2021) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKLW00000000.1.
            The Haloarcula pellucida whole genome shotgun (WGS) project has the
            project accession NZ_RKLW00000000.  This version of the project
            (01) has the accession number NZ_RKLW01000000, and consists of
            sequences RKLW01000001-RKLW01000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 105.85x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019599515.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 05:48:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,116
            CDSs (total)                      :: 4,064
            Genes (coding)                    :: 3,999
            CDSs (with protein)               :: 3,999
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 30 of 65
            Pseudo Genes (incomplete)         :: 54 of 65
            Pseudo Genes (internal stop)      :: 5 of 65
            Pseudo Genes (multiple problems)  :: 23 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3926279
                     /organism="Haloarcula pellucida"
                     /mol_type="genomic DNA"
                     /strain="CECT 7537"
                     /isolation_source="CECT"
                     /type_material="type strain of Halomicroarcula pellucida"
                     /db_xref="taxon:1427151"
                     /geo_loc_name="Spain: Valencia"
                     /collection_date="2017-09"
WGS         RKLW01000001-RKLW01000008
WGS_SCAFLD  NZ_RKLW01000001-NZ_RKLW01000008
//
LOCUS       NZ_JAGSOI010000000   2803692 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Methanococcoides seepicolus strain LLY, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGSOI000000000
VERSION     NZ_JAGSOI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18795806
            Assembly: GCF_023684405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides seepicolus
  ORGANISM  Methanococcoides seepicolus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1  (bases 1 to 2803692)
  AUTHORS   Li,L., Zhang,W., Zhang,S., Song,L., Sun,Q., Zhang,H., Xiang,H. and
            Dong,X.
  TITLE     Bacteria and Archaea Synergistically Convert Glycine Betaine to
            Biogenic Methane in the Formosa Cold Seep of the South China Sea
  JOURNAL   mSystems 6 (5), e0070321 (2021)
   PUBMED   34491083
REFERENCE   2  (bases 1 to 2803692)
  AUTHORS   Dong,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2021) State Key Laboratory of Microbial
            Resources, Institute Of Microbiology Chinese Academy of Sciences,
            No. 1 Beichen West Road, Chaoyang District, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGSOI000000000.1.
            The Methanococcoides seepicolus whole genome shotgun (WGS) project
            has the project accession NZ_JAGSOI000000000.  This version of the
            project (01) has the accession number NZ_JAGSOI010000000, and
            consists of sequences JAGSOI010000001-JAGSOI010000158.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 1.3.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 303x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023684405.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 05:58:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,878
            CDSs (total)                      :: 2,822
            Genes (coding)                    :: 2,695
            CDSs (with protein)               :: 2,695
            Genes (RNA)                       :: 56
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 12 of 127
            Pseudo Genes (incomplete)         :: 101 of 127
            Pseudo Genes (internal stop)      :: 27 of 127
            Pseudo Genes (multiple problems)  :: 12 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2803692
                     /organism="Methanococcoides seepicolus"
                     /mol_type="genomic DNA"
                     /strain="LLY"
                     /isolation_source="cold seep sediment"
                     /type_material="type strain of Methanococcoides
                     seepicolus"
                     /db_xref="taxon:2828780"
                     /geo_loc_name="China: SCS Formosa Ridge"
                     /collection_date="2019-05"
WGS         JAGSOI010000001-JAGSOI010000158
WGS_SCAFLD  NZ_JAGSOI010000001-NZ_JAGSOI010000158
//
LOCUS       NZ_JAWDKD010000000   2103793 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Methanolapillus africanus strain Ag5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWDKD000000000
VERSION     NZ_JAWDKD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34026939
            Assembly: GCF_032714475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolapillus africanus
  ORGANISM  Methanolapillus africanus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolapillus.
REFERENCE   1  (bases 1 to 2103793)
  AUTHORS   Protasov,E., Platt,K., Poehlein,A., Daniel,R. and Brune,A.
  TITLE     Genome sequence of Methanosarcinaceae archaeon Ag5
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2103793)
  AUTHORS   Poehlein,A., Protasov,E., Platt,K., Reeh,H., Daniel,R. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2023) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWDKD000000000.1.
            The Methanolapillus africanus whole genome shotgun (WGS) project
            has the project accession NZ_JAWDKD000000000.  This version of the
            project (01) has the accession number NZ_JAWDKD010000000, and
            consists of sequences JAWDKD010000001-JAWDKD010000034.
            Bacteria and source DNA available from Andreas Brune, Marburg.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2023
            Assembly Method       :: SPAdes v. 3.14.1
            Genome Coverage       :: 115
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032714475.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 06:25:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,879
            CDSs (total)                      :: 1,823
            Genes (coding)                    :: 1,790
            CDSs (with protein)               :: 1,790
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 0 of 33
            Pseudo Genes (incomplete)         :: 28 of 33
            Pseudo Genes (internal stop)      :: 6 of 33
            Pseudo Genes (multiple problems)  :: 1 of 33
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2103793
                     /organism="Methanolapillus africanus"
                     /mol_type="genomic DNA"
                     /strain="Ag5"
                     /isolation_source="gut content"
                     /host="Archispirostreptus gigas"
                     /type_material="type strain of Methanolapillus africanus"
                     /db_xref="taxon:3028297"
                     /geo_loc_name="Germany"
                     /lat_lon="51.02836 N 13.47125 E"
                     /collection_date="2011-10-01"
WGS         JAWDKD010000001-JAWDKD010000034
WGS_SCAFLD  NZ_JAWDKD010000001-NZ_JAWDKD010000034
//
LOCUS       NZ_JAKELO010000000   2236762 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Methanogenium marinum strain DSM 15558, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKELO000000000
VERSION     NZ_JAKELO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24813622
            Assembly: GCF_028912405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanogenium marinum
  ORGANISM  Methanogenium marinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanogenium.
REFERENCE   1  (bases 1 to 2236762)
  AUTHORS   Chen,S.-C. and You,Y.-T.
  TITLE     Draft genome of Methanogenium marinum DSM 15558
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2236762)
  AUTHORS   Chen,S.-C. and You,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2022) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKELO000000000.1.
            The Methanogenium marinum whole genome shotgun (WGS) project has
            the project accession NZ_JAKELO000000000.  This version of the
            project (01) has the accession number NZ_JAKELO010000000, and
            consists of sequences JAKELO010000001-JAKELO010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSM 15558.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUL-2021
            Assembly Method        :: Hifiasm v. v0.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 380.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028912405.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 06:22:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,164
            CDSs (total)                      :: 2,114
            Genes (coding)                    :: 2,094
            CDSs (with protein)               :: 2,094
            Genes (RNA)                       :: 50
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 13 of 20
            Pseudo Genes (internal stop)      :: 4 of 20
            Pseudo Genes (multiple problems)  :: 6 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236762
                     /organism="Methanogenium marinum"
                     /mol_type="genomic DNA"
                     /strain="DSM 15558"
                     /isolation_source="marine sediment collected by a
                     multicore"
                     /culture_collection="DSM:15558"
                     /type_material="type strain of Methanogenium marinum"
                     /db_xref="taxon:348610"
                     /geo_loc_name="USA: Skan Bay, Alaska"
                     /lat_lon="53.62 N 167.05 W"
                     /collection_date="1997-08-24"
WGS         JAKELO010000001-JAKELO010000002
WGS_SCAFLD  NZ_JAKELO010000001-NZ_JAKELO010000002
//
LOCUS       NZ_JAWDKB010000000   1829609 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Methanorbis rubei strain Cs1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAWDKB000000000
VERSION     NZ_JAWDKB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35453645
            Assembly: GCF_032714495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanorbis rubei
  ORGANISM  Methanorbis rubei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanorbis.
REFERENCE   1  (bases 1 to 1829609)
  AUTHORS   Protasov,E., Platt,K., Poehlein,A., Daniel,R. and Brune,A.
  TITLE     Genome sequence of Methancorpusculaceae sp. Cs1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1829609)
  AUTHORS   Poehlein,A., Protasov,E., Platt,K., Reeh,H., Daniel,R. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2023) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWDKB000000000.1.
            The Methanorbis rubei whole genome shotgun (WGS) project has the
            project accession NZ_JAWDKB000000000.  This version of the project
            (01) has the accession number NZ_JAWDKB010000000, and consists of
            sequences JAWDKB010000001-JAWDKB010000015.
            Bacteria and source DNA available from Andreas Brune, Marburg.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2023
            Assembly Method       :: SPAdes v. 3.15.2
            Genome Coverage       :: 253x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032714495.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 06:27:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,866
            CDSs (total)                      :: 1,811
            Genes (coding)                    :: 1,808
            CDSs (with protein)               :: 1,808
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 0 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829609
                     /organism="Methanorbis rubei"
                     /mol_type="genomic DNA"
                     /strain="Cs1"
                     /isolation_source="gut content"
                     /host="Centrobolus splendidus"
                     /type_material="type strain of Methanorbis rubei"
                     /db_xref="taxon:3028300"
                     /geo_loc_name="Germany"
                     /lat_lon="51.02836 N 13.47125 E"
                     /collection_date="2011-10-01"
WGS         JAWDKB010000001-JAWDKB010000015
WGS_SCAFLD  NZ_JAWDKB010000001-NZ_JAWDKB010000015
//
LOCUS       NZ_JAWDKA010000000   1847417 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Methanorbis furvi strain Ag1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAWDKA000000000
VERSION     NZ_JAWDKA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35453644
            Assembly: GCF_032714615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanorbis furvi
  ORGANISM  Methanorbis furvi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanorbis.
REFERENCE   1  (bases 1 to 1847417)
  AUTHORS   Protasov,E., Platt,K., Poehlein,A., Daniel,R. and Brune,A.
  TITLE     Genome sequence of Methancorpusculaceae sp. Ag1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1847417)
  AUTHORS   Poehlein,A., Protasov,E., Platt,K., Reeh,H., Daniel,R. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2023) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWDKA000000000.1.
            The Methanorbis furvi whole genome shotgun (WGS) project has the
            project accession NZ_JAWDKA000000000.  This version of the project
            (01) has the accession number NZ_JAWDKA010000000, and consists of
            sequences JAWDKA010000001-JAWDKA010000026.
            Bacteria and source DNA available from Andreas Brune, Marburg.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2023
            Assembly Method       :: SPAdes v. 3.15.2
            Genome Coverage       :: 258
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032714615.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 06:29:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,922
            CDSs (total)                      :: 1,861
            Genes (coding)                    :: 1,860
            CDSs (with protein)               :: 1,860
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847417
                     /organism="Methanorbis furvi"
                     /mol_type="genomic DNA"
                     /strain="Ag1"
                     /isolation_source="gut content"
                     /host="Archispirostreptus gigas"
                     /type_material="type strain of Methanorbis furvi"
                     /db_xref="taxon:3028299"
                     /geo_loc_name="Germany"
                     /lat_lon="51.02836 N 13.47125 E"
                     /collection_date="2011-10-01"
WGS         JAWDKA010000001-JAWDKA010000026
WGS_SCAFLD  NZ_JAWDKA010000001-NZ_JAWDKA010000026
//
LOCUS       NZ_JAAVJF010000000   2068580 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Pyrobaculum arsenaticum strain 2GA, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAVJF000000000
VERSION     NZ_JAAVJF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14482731
            Assembly: GCF_013414235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrobaculum arsenaticum
  ORGANISM  Pyrobaculum arsenaticum
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2068580)
  AUTHORS   Wang,F., Baquero,D.P., Su,Z., Beltran,L.C., Prangishvili,D.,
            Krupovic,M. and Egelman,E.H.
  TITLE     The structures of two archaeal type IV pili illuminate evolutionary
            relationships
  JOURNAL   Nat Commun 11 (1), 3424 (2020)
   PUBMED   32647180
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2068580)
  AUTHORS   Wang,F., Baquero,D.P., Su,Z., Beltran,L.C., Prangishvili,D.,
            Krupovic,M. and Egelman,E.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2020) Microbiology, Institut Pasteur, 25 Rue du
            Dr Roux, Paris, Paris 75015, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAVJF000000000.1.
            The Pyrobaculum arsenaticum whole genome shotgun (WGS) project has
            the project accession NZ_JAAVJF000000000.  This version of the
            project (01) has the accession number NZ_JAAVJF010000000, and
            consists of sequences JAAVJF010000001-JAAVJF010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAR-2020
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 440.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013414235.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 05:32:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,469
            CDSs (total)                      :: 2,420
            Genes (coding)                    :: 2,382
            CDSs (with protein)               :: 2,382
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 12 of 38
            Pseudo Genes (incomplete)         :: 22 of 38
            Pseudo Genes (internal stop)      :: 11 of 38
            Pseudo Genes (multiple problems)  :: 6 of 38
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068580
                     /organism="Pyrobaculum arsenaticum"
                     /mol_type="genomic DNA"
                     /strain="2GA"
                     /isolation_source="hot spring"
                     /db_xref="taxon:121277"
                     /geo_loc_name="Italy: Pozzuoli"
                     /collection_date="2018-10-30"
WGS         JAAVJF010000001-JAAVJF010000009
WGS_SCAFLD  NZ_JAAVJF010000001-NZ_JAAVJF010000009
//
LOCUS       NZ_WGGD01000000      2212444 bp    DNA     linear   BCT 29-MAR-2025
DEFINITION  Sulfuracidifex metallicus DSM 6482 = JCM 9184 strain DSM 6482,
            whole genome shotgun sequencing project.
ACCESSION   NZ_WGGD00000000
VERSION     NZ_WGGD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09933021
            Assembly: GCF_009729515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfuracidifex metallicus DSM 6482 = JCM 9184
  ORGANISM  Sulfuracidifex metallicus DSM 6482 = JCM 9184
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfuracidifex.
REFERENCE   1  (bases 1 to 2212444)
  AUTHORS   Counts,J.A. and Kelly,R.M.
  TITLE     Sequencing and Assembly of Multiple Reported Metal-Biooxidizing
            Members of the Extremely Thermoacidophilic Archaeal Family
            Sulfolobaceae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2212444)
  AUTHORS   Counts,J.A. and Kelly,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2019) Chemical and Biomolecular Engineering,
            North Carolina State University, 840 Main Campus Drive, Raleigh, NC
            27606, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WGGD00000000.1.
            The Sulfuracidifex metallicus DSM 6482 = JCM 9184 whole genome
            shotgun (WGS) project has the project accession NZ_WGGD00000000.
            This version of the project (01) has the accession number
            NZ_WGGD01000000, and consists of sequences
            WGGD01000001-WGGD01000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-JUL-2019
            Assembly Method        :: Flye v. 2.4.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 307x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009729515.1-RS_2025_03_29
            Annotation Date                   :: 03/29/2025 04:56:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,402
            CDSs (total)                      :: 2,349
            Genes (coding)                    :: 2,307
            CDSs (with protein)               :: 2,307
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 21 of 42
            Pseudo Genes (incomplete)         :: 30 of 42
            Pseudo Genes (internal stop)      :: 11 of 42
            Pseudo Genes (multiple problems)  :: 16 of 42
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212444
                     /organism="Sulfuracidifex metallicus DSM 6482 = JCM 9184"
                     /mol_type="genomic DNA"
                     /strain="DSM 6482"
                     /isolation_source="Solfataric field"
                     /culture_collection="DSM:6482"
                     /type_material="type strain of Sulfolobus metallicus"
                     /db_xref="taxon:523847"
                     /geo_loc_name="Iceland: Krafla Area"
                     /collection_date="1991-04-19"
                     /collected_by="K.O. Stetter, G. Huber"
WGS         WGGD01000001-WGGD01000005
WGS_SCAFLD  NZ_WGGD01000001-NZ_WGGD01000005
//
LOCUS       NZ_AZUU01000000      1306999 bp    DNA     linear   BCT 30-MAR-2025
DEFINITION  Desulfurococcus amylolyticus Z-533, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AZUU00000000
VERSION     NZ_AZUU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02597199
            Assembly: GCF_000513855.1
KEYWORDS    WGS; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Desulfurococcus amylolyticus Z-533
  ORGANISM  Desulfurococcus amylolyticus Z-533
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1306999)
  AUTHORS   Mukhopadhyay,B., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
            Hua,S.X. and Woyke,T.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AZUU00000000.1.
            The Desulfurococcus amylolyticus Z-533 whole genome shotgun (WGS)
            project has the project accession NZ_AZUU00000000.  This version of
            the project (01) has the accession number NZ_AZUU01000000, and
            consists of sequences AZUU01000001-AZUU01000002.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 400456
            Source DNA and Organism available from Biswarup  Mukhopadhyay
            (biswarup@vt.edu)
            Source DNA available from Biswarup  Mukhopadhyay (biswarup@vt.edu)
            Organism available from Biswarup  Mukhopadhyay (biswarup@vt.edu)
            Contacts: Biswarup  Mukhopadhyay (biswarup@vt.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Full annotations are available from IMG.
            
            ##MIGS-Data-START##
            country                  :: Russia
            environment              :: Aquatic; Fresh water; Hot spring
            investigation_type       :: bacteria_archaea
            project_name             :: Desulfurococcus amylolyticus DSM 3822
            sequencing_meth          :: WGS
            ref_biomaterial          :: DSM 3822
            biotic_relationship      :: Free living
            rel_to_oxygen            :: Anaerobe
            finishing_strategy       :: Level 2: High-Quality Draft
            trophic_level            :: Organotroph
            GOLD Stamp ID            :: Gi03283
            Current Finishing Status :: Level 3: Improved-High-Quality Draft
            Type Strain              :: Yes
            Greengenes ID            :: 73260
            Funding Program          :: DOE-CSP 2009
            Isolation Site           :: Hot spring; USSR, Kamchatka
            Cell Shape               :: Coccus-shaped
            Motility                 :: Motile
            Temperature Range        :: Hyperthermophile
            Temperature Optimum      :: 90
            Gram Staining            :: Gram-
            Diseases                 :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Unknown program v. before 2012-06-01
            Genome Coverage          :: Unknown
            Sequencing Technology    :: Illumina GAII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000513855.1-RS_2025_03_30
            Annotation Date                   :: 03/30/2025 02:06:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,438
            CDSs (total)                      :: 1,386
            Genes (coding)                    :: 1,375
            CDSs (with protein)               :: 1,375
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 7 of 11
            Pseudo Genes (internal stop)      :: 3 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1306999
                     /organism="Desulfurococcus amylolyticus Z-533"
                     /mol_type="genomic DNA"
                     /strain="Z-533"
                     /isolation_source="not provided; submitted under MIGS 2.1"
                     /type_material="type strain of Desulfurococcus
                     amylolyticus"
                     /db_xref="taxon:1150674"
                     /geo_loc_name="Russia"
WGS         AZUU01000001-AZUU01000002
WGS_SCAFLD  NZ_KI911318
//
LOCUS       NZ_JACDUN010000000   1778715 bp    DNA     linear   BCT 30-MAR-2025
DEFINITION  Methanococcus maripaludis strain C12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACDUN000000000
VERSION     NZ_JACDUN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908255
            Assembly: GCF_013761165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1778715)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1778715)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACDUN000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACDUN000000000.  This version of the
            project (01) has the accession number NZ_JACDUN010000000, and
            consists of sequences JACDUN010000001-JACDUN010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 826.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013761165.1-RS_2025_03_30
            Annotation Date                   :: 03/30/2025 04:01:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,936
            CDSs (total)                      :: 1,895
            Genes (coding)                    :: 1,887
            CDSs (with protein)               :: 1,887
            Genes (RNA)                       :: 41
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 1 of 8
            Pseudo Genes (incomplete)         :: 7 of 8
            Pseudo Genes (internal stop)      :: 0 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778715
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="C12"
                     /db_xref="taxon:39152"
                     /geo_loc_name="USA: georgia, Sapelo Island"
WGS         JACDUN010000001-JACDUN010000003
WGS_SCAFLD  NZ_JACDUN010000001-NZ_JACDUN010000003
//
LOCUS       NZ_WOWB01000000      3928501 bp    DNA     linear   BCT 30-MAR-2025
DEFINITION  Haloarcula rubripromontorii strain pws8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WOWB00000000
VERSION     NZ_WOWB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13475834
            Assembly: GCF_012726155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula rubripromontorii
  ORGANISM  Haloarcula rubripromontorii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3928501)
  AUTHORS   Verma,D.K., Gopal,K. and Prasad,E.S.
  TITLE     The whole-genome sequencing of Haloarcula japonica strain pws8
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3928501)
  AUTHORS   Verma,D.K., Gopal,K. and Prasad,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Advanced Protein Centre, CSIR-Institue of
            Microbial Technology, F9 Boys Hostel Imtech, IMTECH Sector 39A,
            Chandigarh, Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WOWB00000000.1.
            The Haloarcula rubripromontorii whole genome shotgun (WGS) project
            has the project accession NZ_WOWB00000000.  This version of the
            project (01) has the accession number NZ_WOWB01000000, and consists
            of sequences WOWB01000001-WOWB01000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9(CGWB)
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012726155.1-RS_2025_03_30
            Annotation Date                   :: 03/30/2025 03:48:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,030
            CDSs (total)                      :: 3,975
            Genes (coding)                    :: 3,933
            CDSs (with protein)               :: 3,933
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 15 of 42
            Pseudo Genes (incomplete)         :: 33 of 42
            Pseudo Genes (internal stop)      :: 5 of 42
            Pseudo Genes (multiple problems)  :: 11 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928501
                     /organism="Haloarcula rubripromontorii"
                     /mol_type="genomic DNA"
                     /strain="pws8"
                     /db_xref="taxon:1705562"
                     /geo_loc_name="India"
                     /collection_date="2018-07-19"
WGS         WOWB01000001-WOWB01000009
WGS_SCAFLD  NZ_WOWB01000001-NZ_WOWB01000009
//
LOCUS       NZ_JAKVTY010000000   2672636 bp    DNA     linear   BCT 30-MAR-2025
DEFINITION  Saccharolobus shibatae strain Zzq_1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVTY000000000
VERSION     NZ_JAKVTY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26331115
            Assembly: GCF_022489005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saccharolobus shibatae
  ORGANISM  Saccharolobus shibatae
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Saccharolobus.
REFERENCE   1  (bases 1 to 2672636)
  AUTHORS   Liu,X.
  TITLE     Isolate B12, which harbours a virus-like element, represents a new
            species of the archaebacterial genus Sulfolobus, Sulfolobus
            shibatae, sp. nov
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2672636)
  AUTHORS   Liu,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2022) ZZR Lab, SUSTech Institude of Oceanography,
            Xueyuan Road, Shenzhen, Guang Dong 518055, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVTY000000000.1.
            The Saccharolobus shibatae whole genome shotgun (WGS) project has
            the project accession NZ_JAKVTY000000000.  This version of the
            project (01) has the accession number NZ_JAKVTY010000000, and
            consists of sequences JAKVTY010000001-JAKVTY010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAP denovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 141.6x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022489005.1-RS_2025_03_30
            Annotation Date                   :: 03/30/2025 04:57:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,890
            CDSs (total)                      :: 2,839
            Genes (coding)                    :: 2,679
            CDSs (with protein)               :: 2,679
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 83 of 160
            Pseudo Genes (incomplete)         :: 100 of 160
            Pseudo Genes (internal stop)      :: 27 of 160
            Pseudo Genes (multiple problems)  :: 47 of 160
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672636
                     /organism="Saccharolobus shibatae"
                     /mol_type="genomic DNA"
                     /strain="Zzq_1"
                     /isolation_source="hot spring sediment"
                     /db_xref="taxon:2286"
                     /geo_loc_name="China: Tengchong Rehai"
                     /lat_lon="25.3 N 98.7 E"
                     /collection_date="2020-07"
WGS         JAKVTY010000001-JAKVTY010000042
WGS_SCAFLD  NZ_JAKVTY010000001-NZ_JAKVTY010000042
//
LOCUS       NZ_MASN01000000      4580837 bp    DNA     linear   BCT 31-MAR-2025
DEFINITION  Natrialba sp. SSL1, whole genome shotgun sequencing project.
ACCESSION   NZ_MASN00000000
VERSION     NZ_MASN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05328039
            Assembly: GCF_001861355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrialba sp. SSL1
  ORGANISM  Natrialba sp. SSL1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrialba.
REFERENCE   1  (bases 1 to 4580837)
  AUTHORS   Kalambe,G., Chandarana,P., Tanavade,V. and Upasani,V.
  TITLE     Draft Genome Sequence of a Haloalkaliphilic archaeon: Natrialba sp.
            SSL1 (ATCC 43988) Isolated from Sambhar Salt Lake, India
  JOURNAL   Int J Curr Microbiol Appl Sci 6 (5), 2399-2408 (2017)
  REMARK    DOI: 10.20546/ijcmas.2017.605.268
REFERENCE   2  (bases 1 to 4580837)
  AUTHORS   Kalambe,G.N., Chandarana,P.M., Tanavde,V.M. and Upasani,V.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2016) Microbiology, M. G. Science Institute,
            Navrangpura, Ahmedabad, Gujarat 380009, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MASN00000000.1.
            The Natrialba sp. SSL1 whole genome shotgun (WGS) project has the
            project accession NZ_MASN00000000.  This version of the project
            (01) has the accession number NZ_MASN01000000, and consists of
            sequences MASN01000001-MASN01000061.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 07-JUN-2016
            Assembly Method        :: MyPro v. 2016-06-07
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001861355.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 00:13:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,425
            CDSs (total)                      :: 4,365
            Genes (coding)                    :: 4,276
            CDSs (with protein)               :: 4,276
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 34 of 89
            Pseudo Genes (incomplete)         :: 65 of 89
            Pseudo Genes (internal stop)      :: 17 of 89
            Pseudo Genes (multiple problems)  :: 21 of 89
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4580837
                     /organism="Natrialba sp. SSL1"
                     /mol_type="genomic DNA"
                     /strain="SSL1"
                     /isolation_source="brine sample"
                     /culture_collection="ATCC:43988"
                     /db_xref="taxon:1869245"
                     /geo_loc_name="India: Sambhar Lake, Rajasthan"
                     /lat_lon="26.58 N 75.04999999 E"
                     /collection_date="1984-01-10"
                     /collected_by="Vivek N Upasani"
                     /identified_by="Vivek N Upasani"
WGS         MASN01000001-MASN01000061
WGS_SCAFLD  NZ_MASN01000001-NZ_MASN01000061
//
LOCUS       NZ_CBTY010000000     1636125 bp    DNA     linear   BCT 31-MAR-2025
DEFINITION  Candidatus Nitrosotenuis uzonensis strain N4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBTY000000000
VERSION     NZ_CBTY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3139018
            Assembly: GCF_000723185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosotenuis uzonensis
  ORGANISM  Candidatus Nitrosotenuis uzonensis
            Archaea; Nitrososphaerota; Candidatus Nitrosotenuis.
REFERENCE   1
  AUTHORS   Lebedeva,E.V., Hatzenpichler,R., Pelletier,E., Schuster,N.,
            Hauzmayer,S., Bulaev,A., Grigor'eva,N.V., Galushko,A., Schmid,M.,
            Palatinszky,M., Le Paslier,D., Daims,H. and Wagner,M.
  TITLE     Enrichment and genome sequence of the group I.1a ammonia-oxidizing
            Archaeon 'Ca. Nitrosotenuis uzonensis' representing a clade
            globally distributed in thermal habitats
  JOURNAL   PLoS One 8 (11), e80835 (2013)
   PUBMED   24278328
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636125)
  AUTHORS   Regsiter,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2013) CEA, Genoscope, 2 rue Gaston Cremieux, Evry
            cedex, 91057, FRANCE
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBTY000000000.1.
            The Candidatus Nitrosotenuis uzonensis whole genome shotgun (WGS)
            project has the project accession NZ_CBTY000000000.  This version
            of the project (01) has the accession number NZ_CBTY010000000, and
            consists of sequences CBTY010000001-CBTY010000014.
            Annotation results relative to BLAST similarities, COG
            assignations, enzymatic function prediction (PRIAM software),
            TMHMM, PsortB and SignalP predictions, and synteny conservation
            (Syntonizer software) are available in the MicroScope annotation
            platform
            http://www.genoscope.cns.fr/agc/microscope.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000723185.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 01:52:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,967
            CDSs (total)                      :: 1,917
            Genes (coding)                    :: 1,913
            CDSs (with protein)               :: 1,913
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636125
                     /organism="Candidatus Nitrosotenuis uzonensis"
                     /mol_type="genomic DNA"
                     /strain="N4"
                     /db_xref="taxon:1407055"
WGS         CBTY010000001-CBTY010000014
WGS_SCAFLD  NZ_CBTY010000001-NZ_CBTY010000014
//
LOCUS       NZ_AVSQ01000000      1762971 bp    DNA     linear   BCT 31-MAR-2025
DEFINITION  Candidatus Nitrosotenuis chungbukensis strain MY2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_AVSQ00000000
VERSION     NZ_AVSQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02767256
            Assembly: GCF_000685395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosotenuis chungbukensis
  ORGANISM  Candidatus Nitrosotenuis chungbukensis
            Archaea; Nitrososphaerota; Candidatus Nitrosotenuis.
REFERENCE   1  (bases 1 to 1762971)
  AUTHORS   Buessecker,S., Palmer,M., Lai,D., Dimapilis,J., Mayali,X.,
            Mosier,D., Jiao,J.Y., Colman,D.R., Keller,L.M., St John,E.,
            Miranda,M., Gonzalez,C., Gonzalez,L., Sam,C., Villa,C., Zhuo,M.,
            Bodman,N., Robles,F., Boyd,E.S., Cox,A.D., St Clair,B., Hua,Z.S.,
            Li,W.J., Reysenbach,A.L., Stott,M.B., Weber,P.K., Pett-Ridge,J.,
            Dekas,A.E., Hedlund,B.P. and Dodsworth,J.A.
  TITLE     An essential role for tungsten in the ecology and evolution of a
            previously uncultivated lineage of anaerobic, thermophilic Archaea
  JOURNAL   Nat Commun 13 (1), 3773 (2022)
   PUBMED   35773279
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762971)
  AUTHORS   Jung,M.Y., Park,S.J., Kim,S.J., Kim,J.G., Sinninghe Damste,J.S.,
            Jeon,C.O. and Rhee,S.K.
  TITLE     A mesophilic, autotrophic, ammonia-oxidizing archaeon of
            thaumarchaeal group I.1a cultivated from a deep oligotrophic soil
            horizon
  JOURNAL   Appl Environ Microbiol 80 (12), 3645-3655 (2014)
   PUBMED   24705324
REFERENCE   3  (bases 1 to 1762971)
  AUTHORS   Rhee,S.K.
  TITLE     Thaumarchaeota archaeon MY2 Genome sequencing
  JOURNAL   Unpublished
REFERENCE   4  (bases 1 to 1762971)
  AUTHORS   Rhee,S.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-AUG-2013) Dept of Microbiology, Chungbuk National
            University, 12 Gaeshin-dong, Heungduk-gu, Cheongju, Chungbuk, South
            Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AVSQ00000000.1.
            The Candidatus Nitrosotenuis chungbukensis whole genome shotgun
            (WGS) project has the project accession NZ_AVSQ00000000.  This
            version of the project (01) has the accession number
            NZ_AVSQ01000000, and consists of sequences
            AVSQ01000001-AVSQ01000024.
            Bacteria available from SK Rhee. Source DNA available from SK Rhee.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.0
            Assembly Name         :: NKMY2
            Genome Coverage       :: 20.0x
            Sequencing Technology :: 454; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000685395.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 01:52:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,066
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 2,009
            CDSs (with protein)               :: 2,009
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 1 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762971
                     /organism="Candidatus Nitrosotenuis chungbukensis"
                     /mol_type="genomic DNA"
                     /strain="MY2"
                     /isolation_source="soil"
                     /db_xref="taxon:1353246"
                     /geo_loc_name="South Korea"
WGS         AVSQ01000001-AVSQ01000024
WGS_SCAFLD  NZ_AVSQ01000001-NZ_AVSQ01000024
//
LOCUS       NZ_CAJNAQ010000000   1814860 bp    DNA     linear   BCT 31-MAR-2025
DEFINITION  Candidatus Nitrosotenuis uzonensis isolate Candidatus Nitrosotenuis
            uzonensis 5A, whole genome shotgun sequencing project.
ACCESSION   NZ_CAJNAQ000000000
VERSION     NZ_CAJNAQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7992919
            Assembly: GCF_905220655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosotenuis uzonensis
  ORGANISM  Candidatus Nitrosotenuis uzonensis
            Archaea; Nitrososphaerota; Candidatus Nitrosotenuis.
REFERENCE   1  (bases 1 to 1814860)
  AUTHORS   Han,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2021) EAST CHINA NORMAL UNIVERSITY, 500 Dongchuan
            Road, Minhang District, Shanghai 200241, P.R.China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJNAQ000000000.1.
            The Candidatus Nitrosotenuis uzonensis whole genome shotgun (WGS)
            project has the project accession NZ_CAJNAQ000000000.  This version
            of the project (01) has the accession number NZ_CAJNAQ010000000,
            and consists of sequences CAJNAQ010000001-CAJNAQ010000008.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905220655.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 04:35:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,155
            CDSs (total)                      :: 2,103
            Genes (coding)                    :: 2,095
            CDSs (with protein)               :: 2,095
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 1 of 8
            Pseudo Genes (incomplete)         :: 6 of 8
            Pseudo Genes (internal stop)      :: 1 of 8
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814860
                     /organism="Candidatus Nitrosotenuis uzonensis"
                     /mol_type="genomic DNA"
                     /isolate="Candidatus Nitrosotenuis uzonensis 5A"
                     /db_xref="taxon:1407055"
WGS         CAJNAQ010000001-CAJNAQ010000008
WGS_SCAFLD  NZ_CAJNAQ010000001-NZ_CAJNAQ010000008
//
LOCUS       NZ_QEFP02000000       449376 bp    DNA     linear   BCT 31-MAR-2025
DEFINITION  Candidatus Nanobsidianus stetteri isolate SCGC AB-777_F03, whole
            genome shotgun sequencing project.
ACCESSION   NZ_QEFP00000000
VERSION     NZ_QEFP00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06968103
            Assembly: GCF_003086415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nanobsidianus stetteri
  ORGANISM  Candidatus Nanobsidianus stetteri
            Archaea; Nanobdellota; Candidatus Nanoarchaeia; Nanoarchaeales;
            Nanopusillaceae; Candidatus Nanobsidianus.
REFERENCE   1  (bases 1 to 449376)
  AUTHORS   Munson-McGee,J.H., Field,E.K., Bateson,M., Rooney,C.,
            Stepanauskas,R. and Young,M.J.
  TITLE     Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus
            Distribution across Yellowstone National Park Hot Springs
  JOURNAL   Appl Environ Microbiol 81 (22), 7860-7868 (2015)
   PUBMED   26341207
REFERENCE   2  (bases 1 to 449376)
  AUTHORS   Munson-Mcgee,J., Field,E., Bateson,M., Rooney,C., Stepanauskas,R.
            and Young,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2021) DOE Joint Genome Institute, Lawrence
            Berkeley National Lab, Integrative Genomics Building (IGB),
            Berkeley, CA 94720, USA
REFERENCE   3  (bases 1 to 449376)
  AUTHORS   Munson-Mcgee,J.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2017) Microbiology and Immunology, Montana State
            University, Chemistry and Biochemistry Building 150, Bozman, MT
            59717, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QEFP00000000.2.
            The Candidatus Nanobsidianus stetteri whole genome shotgun (WGS)
            project has the project accession NZ_QEFP00000000.  This version of
            the project (02) has the accession number NZ_QEFP02000000, and
            consists of sequences QEFP02000001-QEFP02000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. v. 2.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003086415.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 04:54:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 551
            CDSs (total)                      :: 519
            Genes (coding)                    :: 512
            CDSs (with protein)               :: 512
            Genes (RNA)                       :: 32
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 29
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 1 of 7
            Pseudo Genes (incomplete)         :: 6 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            Pseudo Genes (multiple problems)  :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..449376
                     /organism="Candidatus Nanobsidianus stetteri"
                     /mol_type="genomic DNA"
                     /isolate="SCGC AB-777_F03"
                     /isolation_source="single cell amplified by MDA; Acidic
                     hot spring"
                     /db_xref="taxon:1294122"
                     /geo_loc_name="USA: Yellowstone National Park Hot spring
                     NL01"
                     /lat_lon="44.7519 N 110.7288 W"
                     /collection_date="2011-10-11"
WGS         QEFP02000001-QEFP02000020
WGS_SCAFLD  NZ_QEFP02000001-NZ_QEFP02000020
//
LOCUS       NZ_JAPPVQ010000000   1677461 bp    DNA     linear   BCT 31-MAR-2025
DEFINITION  Candidatus Nitrosotenuis cloacae strain LSM1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPPVQ000000000
VERSION     NZ_JAPPVQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31808193
            Assembly: GCF_026768455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosotenuis cloacae
  ORGANISM  Candidatus Nitrosotenuis cloacae
            Archaea; Nitrososphaerota; Candidatus Nitrosotenuis.
REFERENCE   1  (bases 1 to 1677461)
  AUTHORS   Lu,S.
  TITLE     Candidatus Nitrosotenuis cloacae, an Ammonia Oxidizing Archaea from
            a Freshwater Aquaculture Pond
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1677461)
  AUTHORS   Lu,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2022) Department of Ecological Engineering,
            Fishery Machinery and Instrument Research Institute, Siping,
            Shanghai 200092, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPPVQ000000000.1.
            The Candidatus Nitrosotenuis cloacae whole genome shotgun (WGS)
            project has the project accession NZ_JAPPVQ000000000.  This version
            of the project (01) has the accession number NZ_JAPPVQ010000000,
            and consists of sequences JAPPVQ010000001-JAPPVQ010000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026768455.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 05:47:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,021
            CDSs (total)                      :: 1,971
            Genes (coding)                    :: 1,956
            CDSs (with protein)               :: 1,956
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 14 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677461
                     /organism="Candidatus Nitrosotenuis cloacae"
                     /mol_type="genomic DNA"
                     /strain="LSM1"
                     /isolation_source="freshwater aquaculture pond"
                     /db_xref="taxon:1603555"
                     /geo_loc_name="China: Shanghai"
                     /collection_date="2018-12-21"
WGS         JAPPVQ010000001-JAPPVQ010000018
WGS_SCAFLD  NZ_JAPPVQ010000001-NZ_JAPPVQ010000018
//
LOCUS       NZ_JAWDKC010000000   2044068 bp    DNA     linear   BCT 31-MAR-2025
DEFINITION  Methanimicrococcus hacksteinii strain At1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWDKC000000000
VERSION     NZ_JAWDKC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34026935
            Assembly: GCF_032714515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanimicrococcus hacksteinii
  ORGANISM  Methanimicrococcus hacksteinii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanimicrococcus.
REFERENCE   1  (bases 1 to 2044068)
  AUTHORS   Protasov,E., Platt,K., Poehlein,A., Daniel,R. and Brune,A.
  TITLE     Genome sequence of Methanimicrococcus sp. At1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2044068)
  AUTHORS   Poehlein,A., Protasov,E., Platt,K., Reeh,H., Daniel,R. and Brune,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2023) Genomic and Applied Microbiology &
            Goettingen Genomics Laboratory, Georg-August-University Goettingen,
            Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWDKC000000000.1.
            The Methanimicrococcus hacksteinii whole genome shotgun (WGS)
            project has the project accession NZ_JAWDKC000000000.  This version
            of the project (01) has the accession number NZ_JAWDKC010000000,
            and consists of sequences JAWDKC010000001-JAWDKC010000037.
            Bacteria and source DNA available from Andreas Brune, Marburg.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2023
            Assembly Method       :: Unicycler v. 0.5.0
            Genome Coverage       :: 115
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032714515.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 05:36:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,878
            CDSs (total)                      :: 1,816
            Genes (coding)                    :: 1,781
            CDSs (with protein)               :: 1,781
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 5, 4 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 0 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 9 of 35
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044068
                     /organism="Methanimicrococcus hacksteinii"
                     /mol_type="genomic DNA"
                     /strain="At1"
                     /isolation_source="gut content"
                     /host="Archimandrita tessellata"
                     /type_material="type strain of Methanimicrococcus
                     hacksteinii"
                     /db_xref="taxon:3028293"
                     /geo_loc_name="Germany"
                     /lat_lon="51.02836 N 13.47125 E"
                     /collection_date="2011-10-01"
WGS         JAWDKC010000001-JAWDKC010000037
WGS_SCAFLD  NZ_JAWDKC010000001-NZ_JAWDKC010000037
//
LOCUS       NZ_JDTG01000000      4131621 bp    DNA     linear   BCT 31-MAR-2025
DEFINITION  Natrinema thermotolerans A29, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JDTG00000000
VERSION     NZ_JDTG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02629025
            Assembly: GCF_000710605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema thermotolerans A29
  ORGANISM  Natrinema thermotolerans A29
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4131621)
  AUTHORS   Cha,I.T., Lee,M.H., Kim,B.Y., Cho,Y.J., Kim,D.W., Yim,K.J.,
            Song,H.S., Seo,M.J., Rhee,J.K., Choi,J.S., Choi,H.J., Yoon,C.,
            Roh,S.W. and Nam,Y.D.
  TITLE     Genome sequence of the haloarchaeon Haloterrigena jeotgali type
            strain A29(T) isolated from salt-fermented food
  JOURNAL   Stand Genomic Sci 10, 49 (2015)
   PUBMED   26380637
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4131621)
  AUTHORS   Roh,S.W., Nam,Y.-D., Cha,I.-T. and Lee,H.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2014) Jeju Center, Korea Basic Science Institute,
            Jeju-si, Jeju-do 690-140, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JDTG00000000.1.
            The Natrinema thermotolerans A29 whole genome shotgun (WGS) project
            has the project accession NZ_JDTG00000000.  This version of the
            project (01) has the accession number NZ_JDTG01000000, and consists
            of sequences JDTG01000001-JDTG01000020.
            Bacteria available from KCTC 4020, DSM 18794, JCM 14585, CECT 7218.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2013
            Assembly Method        :: CLC Genomics Workbench v. 6.5.1
            Assembly Name          :: HTGA29.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 700.5x
            Sequencing Technology  :: Illumina MiSeq; CLC Genomics Workbench;
                                      CLC Genomics Workbench
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000710605.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 14:27:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,299
            CDSs (total)                      :: 4,235
            Genes (coding)                    :: 4,187
            CDSs (with protein)               :: 4,187
            Genes (RNA)                       :: 64
            rRNAs                             :: 5, 2, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 7 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 16 of 48
            Pseudo Genes (incomplete)         :: 34 of 48
            Pseudo Genes (internal stop)      :: 5 of 48
            Pseudo Genes (multiple problems)  :: 6 of 48
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4131621
                     /organism="Natrinema thermotolerans A29"
                     /mol_type="genomic DNA"
                     /strain="A29"
                     /isolation_source="Korean salt-fermented food"
                     /culture_collection="KCTC:4020"
                     /type_material="type strain of Haloterrigena jeotgali"
                     /db_xref="taxon:1455609"
                     /geo_loc_name="South Korea"
                     /collection_date="2013"
WGS         JDTG01000001-JDTG01000020
WGS_SCAFLD  NZ_JDTG01000001-NZ_JDTG01000020
//
LOCUS       NZ_LPRK01000000      2222032 bp    DNA     linear   BCT 01-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRK00000000
VERSION     NZ_LPRK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305145
            Assembly: GCF_001560115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2222032)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2222032)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRK00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRK00000000.  This version of the
            project (01) has the accession number NZ_LPRK01000000, and consists
            of sequences LPRK01000001-LPRK01000002.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_11
            Genome Coverage       :: 92.54545455x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560115.1-RS_2025_04_01
            Annotation Date                   :: 04/01/2025 09:14:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,328
            Genes (coding)                    :: 2,252
            CDSs (with protein)               :: 2,252
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 36 of 76
            Pseudo Genes (incomplete)         :: 36 of 76
            Pseudo Genes (internal stop)      :: 14 of 76
            Pseudo Genes (multiple problems)  :: 10 of 76
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222032
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-11"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRK01000001-LPRK01000002
WGS_SCAFLD  NZ_LPRK01000001-NZ_LPRK01000002
//
LOCUS       NZ_LPRJ01000000      2221110 bp    DNA     linear   BCT 01-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRJ00000000
VERSION     NZ_LPRJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305144
            Assembly: GCF_001560085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2221110)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2221110)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRJ00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRJ00000000.  This version of the
            project (01) has the accession number NZ_LPRJ01000000, and consists
            of sequences LPRJ01000001-LPRJ01000009.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_10
            Genome Coverage       :: 36.53690909x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560085.1-RS_2025_04_01
            Annotation Date                   :: 04/01/2025 09:16:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,368
            CDSs (total)                      :: 2,316
            Genes (coding)                    :: 2,283
            CDSs (with protein)               :: 2,283
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 7 of 33
            Pseudo Genes (incomplete)         :: 23 of 33
            Pseudo Genes (internal stop)      :: 6 of 33
            Pseudo Genes (multiple problems)  :: 3 of 33
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221110
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-10"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRJ01000001-LPRJ01000009
WGS_SCAFLD  NZ_LPRJ01000001-NZ_LPRJ01000009
//
LOCUS       NZ_LPRM01000000      2221412 bp    DNA     linear   BCT 01-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRM00000000
VERSION     NZ_LPRM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305147
            Assembly: GCF_001560135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2221412)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2221412)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRM00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRM00000000.  This version of the
            project (01) has the accession number NZ_LPRM01000000, and consists
            of sequences LPRM01000001-LPRM01000006.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_13
            Genome Coverage       :: 81.73294545x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560135.1-RS_2025_04_01
            Annotation Date                   :: 04/01/2025 09:18:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,370
            CDSs (total)                      :: 2,317
            Genes (coding)                    :: 2,276
            CDSs (with protein)               :: 2,276
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 14 of 41
            Pseudo Genes (incomplete)         :: 24 of 41
            Pseudo Genes (internal stop)      :: 7 of 41
            Pseudo Genes (multiple problems)  :: 4 of 41
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221412
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-13"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRM01000001-LPRM01000006
WGS_SCAFLD  NZ_LPRM01000001-NZ_LPRM01000006
//
LOCUS       NZ_LPSF01000000      2239117 bp    DNA     linear   BCT 01-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C06_12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSF00000000
VERSION     NZ_LPSF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305166
            Assembly: GCF_001560525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2239117)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2239117)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSF00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSF00000000.  This version of the
            project (01) has the accession number NZ_LPSF01000000, and consists
            of sequences LPSF01000001-LPSF01000007.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C06_12
            Genome Coverage       :: 70.41014545x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560525.1-RS_2025_04_01
            Annotation Date                   :: 04/01/2025 09:14:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,400
            CDSs (total)                      :: 2,347
            Genes (coding)                    :: 2,308
            CDSs (with protein)               :: 2,308
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 12 of 39
            Pseudo Genes (incomplete)         :: 24 of 39
            Pseudo Genes (internal stop)      :: 8 of 39
            Pseudo Genes (multiple problems)  :: 5 of 39
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239117
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C06_12"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-29"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSF01000001-LPSF01000007
WGS_SCAFLD  NZ_LPSF01000001-NZ_LPSF01000007
//
LOCUS       NZ_LPRP01000000      2221753 bp    DNA     linear   BCT 01-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-16, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRP00000000
VERSION     NZ_LPRP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305150
            Assembly: GCF_001560205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2221753)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2221753)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRP00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRP00000000.  This version of the
            project (01) has the accession number NZ_LPRP01000000, and consists
            of sequences LPRP01000001-LPRP01000008.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_16
            Genome Coverage       :: 106.2321455x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560205.1-RS_2025_04_01
            Annotation Date                   :: 04/01/2025 09:20:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,368
            CDSs (total)                      :: 2,316
            Genes (coding)                    :: 2,274
            CDSs (with protein)               :: 2,274
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 14 of 42
            Pseudo Genes (incomplete)         :: 27 of 42
            Pseudo Genes (internal stop)      :: 6 of 42
            Pseudo Genes (multiple problems)  :: 5 of 42
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221753
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-16"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRP01000001-LPRP01000008
WGS_SCAFLD  NZ_LPRP01000001-NZ_LPRP01000008
//
LOCUS       NZ_LPSO01000000      2208660 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_09, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSO00000000
VERSION     NZ_LPSO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305176
            Assembly: GCF_001560715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2208660)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2208660)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSO00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSO00000000.  This version of the
            project (01) has the accession number NZ_LPSO01000000, and consists
            of sequences LPSO01000001-LPSO01000004.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_09
            Genome Coverage       :: 159.4491273x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560715.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:26:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,327
            Genes (coding)                    :: 2,274
            CDSs (with protein)               :: 2,274
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 22 of 53
            Pseudo Genes (incomplete)         :: 26 of 53
            Pseudo Genes (internal stop)      :: 10 of 53
            Pseudo Genes (multiple problems)  :: 5 of 53
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208660
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_09"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSO01000001-LPSO01000004
WGS_SCAFLD  NZ_LPSO01000001-NZ_LPSO01000004
//
LOCUS       NZ_LPST01000000      2239180 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPST00000000
VERSION     NZ_LPST00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305181
            Assembly: GCF_001560815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2239180)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2239180)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPST00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPST00000000.  This version of the
            project (01) has the accession number NZ_LPST01000000, and consists
            of sequences LPST01000001-LPST01000010.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_14
            Genome Coverage       :: 44.08658182x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560815.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:26:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,398
            CDSs (total)                      :: 2,346
            Genes (coding)                    :: 2,301
            CDSs (with protein)               :: 2,301
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 17 of 45
            Pseudo Genes (incomplete)         :: 26 of 45
            Pseudo Genes (internal stop)      :: 10 of 45
            Pseudo Genes (multiple problems)  :: 7 of 45
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239180
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_14"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPST01000001-LPST01000010
WGS_SCAFLD  NZ_LPST01000001-NZ_LPST01000010
//
LOCUS       NZ_LPRG01000000      2219663 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-05, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRG00000000
VERSION     NZ_LPRG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305140
            Assembly: GCF_001560035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2219663)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2219663)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRG00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRG00000000.  This version of the
            project (01) has the accession number NZ_LPRG01000000, and consists
            of sequences LPRG01000001-LPRG01000021.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_05
            Genome Coverage       :: 96.4664x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560035.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:25:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,374
            CDSs (total)                      :: 2,322
            Genes (coding)                    :: 2,269
            CDSs (with protein)               :: 2,269
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 17 of 53
            Pseudo Genes (incomplete)         :: 32 of 53
            Pseudo Genes (internal stop)      :: 12 of 53
            Pseudo Genes (multiple problems)  :: 8 of 53
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219663
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-05"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRG01000001-LPRG01000021
WGS_SCAFLD  NZ_LPRG01000001-NZ_LPRG01000021
//
LOCUS       NZ_LPRF01000000      2221964 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-04, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRF00000000
VERSION     NZ_LPRF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305139
            Assembly: GCF_001559985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2221964)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2221964)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRF00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRF00000000.  This version of the
            project (01) has the accession number NZ_LPRF01000000, and consists
            of sequences LPRF01000001-LPRF01000009.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_04
            Genome Coverage       :: 103.1804x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001559985.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:25:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,375
            CDSs (total)                      :: 2,321
            Genes (coding)                    :: 2,279
            CDSs (with protein)               :: 2,279
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 14 of 42
            Pseudo Genes (incomplete)         :: 27 of 42
            Pseudo Genes (internal stop)      :: 8 of 42
            Pseudo Genes (multiple problems)  :: 7 of 42
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221964
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-04"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRF01000001-LPRF01000009
WGS_SCAFLD  NZ_LPRF01000001-NZ_LPRF01000009
//
LOCUS       NZ_LPSJ01000000      2198578 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_03, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSJ00000000
VERSION     NZ_LPSJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305170
            Assembly: GCF_001560605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2198578)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2198578)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSJ00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSJ00000000.  This version of the
            project (01) has the accession number NZ_LPSJ01000000, and consists
            of sequences LPSJ01000001-LPSJ01000008.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_03
            Genome Coverage       :: 89.72792727x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560605.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:27:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,375
            CDSs (total)                      :: 2,322
            Genes (coding)                    :: 2,279
            CDSs (with protein)               :: 2,279
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 13 of 43
            Pseudo Genes (incomplete)         :: 27 of 43
            Pseudo Genes (internal stop)      :: 7 of 43
            Pseudo Genes (multiple problems)  :: 4 of 43
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2198578
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_03"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSJ01000001-LPSJ01000008
WGS_SCAFLD  NZ_LPSJ01000001-NZ_LPSJ01000008
//
LOCUS       NZ_LPRX01000000      2222315 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C03_01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRX00000000
VERSION     NZ_LPRX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305158
            Assembly: GCF_001560375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2222315)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2222315)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRX00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRX00000000.  This version of the
            project (01) has the accession number NZ_LPRX01000000, and consists
            of sequences LPRX01000001-LPRX01000005.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C03_01
            Genome Coverage       :: 100.8282182x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560375.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:28:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,395
            CDSs (total)                      :: 2,343
            Genes (coding)                    :: 2,291
            CDSs (with protein)               :: 2,291
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 21 of 52
            Pseudo Genes (incomplete)         :: 27 of 52
            Pseudo Genes (internal stop)      :: 13 of 52
            Pseudo Genes (multiple problems)  :: 9 of 52
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222315
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C03_01"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRX01000001-LPRX01000005
WGS_SCAFLD  NZ_LPRX01000001-NZ_LPRX01000005
//
LOCUS       NZ_LPSS01000000      2216328 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSS00000000
VERSION     NZ_LPSS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305180
            Assembly: GCF_001560795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2216328)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2216328)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSS00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSS00000000.  This version of the
            project (01) has the accession number NZ_LPSS01000000, and consists
            of sequences LPSS01000001-LPSS01000004.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_13
            Genome Coverage       :: 90.85618182x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560795.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:27:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,329
            Genes (coding)                    :: 2,286
            CDSs (with protein)               :: 2,286
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 13 of 43
            Pseudo Genes (incomplete)         :: 27 of 43
            Pseudo Genes (internal stop)      :: 10 of 43
            Pseudo Genes (multiple problems)  :: 7 of 43
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216328
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_13"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSS01000001-LPSS01000004
WGS_SCAFLD  NZ_LPSS01000001-NZ_LPSS01000004
//
LOCUS       NZ_LPSI01000000      2241116 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_02, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSI00000000
VERSION     NZ_LPSI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305169
            Assembly: GCF_001560595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2241116)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2241116)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSI00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSI00000000.  This version of the
            project (01) has the accession number NZ_LPSI01000000, and consists
            of sequences LPSI01000001-LPSI01000014.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_02
            Genome Coverage       :: 90.85214545x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560595.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:25:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,406
            CDSs (total)                      :: 2,353
            Genes (coding)                    :: 2,307
            CDSs (with protein)               :: 2,307
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 17 of 46
            Pseudo Genes (incomplete)         :: 27 of 46
            Pseudo Genes (internal stop)      :: 12 of 46
            Pseudo Genes (multiple problems)  :: 10 of 46
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241116
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_02"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSI01000001-LPSI01000014
WGS_SCAFLD  NZ_LPSI01000001-NZ_LPSI01000014
//
LOCUS       NZ_LPRR01000000      2220445 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-18, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRR00000000
VERSION     NZ_LPRR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305152
            Assembly: GCF_001560245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2220445)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2220445)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRR00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRR00000000.  This version of the
            project (01) has the accession number NZ_LPRR01000000, and consists
            of sequences LPRR01000001-LPRR01000005.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_18
            Genome Coverage       :: 114.3300364x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560245.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 01:27:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,374
            CDSs (total)                      :: 2,322
            Genes (coding)                    :: 2,267
            CDSs (with protein)               :: 2,267
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 25 of 55
            Pseudo Genes (incomplete)         :: 27 of 55
            Pseudo Genes (internal stop)      :: 7 of 55
            Pseudo Genes (multiple problems)  :: 4 of 55
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220445
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-18"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRR01000001-LPRR01000005
WGS_SCAFLD  NZ_LPRR01000001-NZ_LPRR01000005
//
LOCUS       NZ_LPRO01000000      2265442 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRO00000000
VERSION     NZ_LPRO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305149
            Assembly: GCF_001560195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2265442)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2265442)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRO00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRO00000000.  This version of the
            project (01) has the accession number NZ_LPRO01000000, and consists
            of sequences LPRO01000001-LPRO01000016.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_15
            Genome Coverage       :: 166.0911636x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560195.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:34:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,442
            CDSs (total)                      :: 2,390
            Genes (coding)                    :: 2,333
            CDSs (with protein)               :: 2,333
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 20 of 57
            Pseudo Genes (incomplete)         :: 33 of 57
            Pseudo Genes (internal stop)      :: 14 of 57
            Pseudo Genes (multiple problems)  :: 10 of 57
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265442
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-15"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRO01000001-LPRO01000016
WGS_SCAFLD  NZ_LPRO01000001-NZ_LPRO01000016
//
LOCUS       NZ_LPSE01000000      2220066 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C06_11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSE00000000
VERSION     NZ_LPSE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305165
            Assembly: GCF_001560515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2220066)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2220066)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSE00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSE00000000.  This version of the
            project (01) has the accession number NZ_LPSE01000000, and consists
            of sequences LPSE01000001-LPSE01000006.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C06_11
            Genome Coverage       :: 51.31789091x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560515.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:35:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,385
            CDSs (total)                      :: 2,332
            Genes (coding)                    :: 2,285
            CDSs (with protein)               :: 2,285
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 19 of 47
            Pseudo Genes (incomplete)         :: 30 of 47
            Pseudo Genes (internal stop)      :: 11 of 47
            Pseudo Genes (multiple problems)  :: 12 of 47
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220066
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C06_11"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-29"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSE01000001-LPSE01000006
WGS_SCAFLD  NZ_LPSE01000001-NZ_LPSE01000006
//
LOCUS       NZ_LPRW01000000      2213914 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05A_C05_01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRW00000000
VERSION     NZ_LPRW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305157
            Assembly: GCF_001560355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2213914)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2213914)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRW00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRW00000000.  This version of the
            project (01) has the accession number NZ_LPRW01000000, and consists
            of sequences LPRW01000001-LPRW01000015.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05A_C05_01
            Genome Coverage       :: 50.07796364x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560355.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:34:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,389
            CDSs (total)                      :: 2,337
            Genes (coding)                    :: 2,275
            CDSs (with protein)               :: 2,275
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 23 of 62
            Pseudo Genes (incomplete)         :: 38 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 8 of 62
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213914
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05A_C05_01"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRW01000001-LPRW01000015
WGS_SCAFLD  NZ_LPRW01000001-NZ_LPRW01000015
//
LOCUS       NZ_LPRN01000000      2217527 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRN00000000
VERSION     NZ_LPRN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305148
            Assembly: GCF_001560165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2217527)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2217527)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRN00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRN00000000.  This version of the
            project (01) has the accession number NZ_LPRN01000000, and consists
            of sequences LPRN01000001-LPRN01000013.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_14
            Genome Coverage       :: 123.6375273x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560165.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:41:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,382
            CDSs (total)                      :: 2,330
            Genes (coding)                    :: 2,261
            CDSs (with protein)               :: 2,261
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 28 of 69
            Pseudo Genes (incomplete)         :: 39 of 69
            Pseudo Genes (internal stop)      :: 10 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217527
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-14"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRN01000001-LPRN01000013
WGS_SCAFLD  NZ_LPRN01000001-NZ_LPRN01000013
//
LOCUS       NZ_LPRZ01000000      2238124 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C06_03, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRZ00000000
VERSION     NZ_LPRZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305160
            Assembly: GCF_001560405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2238124)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2238124)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRZ00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRZ00000000.  This version of the
            project (01) has the accession number NZ_LPRZ01000000, and consists
            of sequences LPRZ01000001-LPRZ01000017.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C06_03
            Genome Coverage       :: 83.23738182x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560405.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:36:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,439
            CDSs (total)                      :: 2,387
            Genes (coding)                    :: 2,332
            CDSs (with protein)               :: 2,332
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 21 of 55
            Pseudo Genes (incomplete)         :: 32 of 55
            Pseudo Genes (internal stop)      :: 12 of 55
            Pseudo Genes (multiple problems)  :: 10 of 55
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238124
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C06_03"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-29"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRZ01000001-LPRZ01000017
WGS_SCAFLD  NZ_LPRZ01000001-NZ_LPRZ01000017
//
LOCUS       NZ_LPSH01000000      2220605 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSH00000000
VERSION     NZ_LPSH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305168
            Assembly: GCF_001560565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2220605)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2220605)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSH00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSH00000000.  This version of the
            project (01) has the accession number NZ_LPSH01000000, and consists
            of sequences LPSH01000001-LPSH01000021.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_01
            Genome Coverage       :: 95.76858182x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560565.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:38:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,327
            Genes (coding)                    :: 2,273
            CDSs (with protein)               :: 2,273
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 18 of 54
            Pseudo Genes (incomplete)         :: 36 of 54
            Pseudo Genes (internal stop)      :: 8 of 54
            Pseudo Genes (multiple problems)  :: 8 of 54
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220605
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_01"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSH01000001-LPSH01000021
WGS_SCAFLD  NZ_LPSH01000001-NZ_LPSH01000021
//
LOCUS       NZ_LPRS01000000      2219220 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-20, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRS00000000
VERSION     NZ_LPRS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305153
            Assembly: GCF_001560275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2219220)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2219220)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRS00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRS00000000.  This version of the
            project (01) has the accession number NZ_LPRS01000000, and consists
            of sequences LPRS01000001-LPRS01000008.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_20
            Genome Coverage       :: 180.4064x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560275.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:33:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,329
            Genes (coding)                    :: 2,252
            CDSs (with protein)               :: 2,252
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 1 of 77
            Pseudo Genes (frameshifted)       :: 29 of 77
            Pseudo Genes (incomplete)         :: 41 of 77
            Pseudo Genes (internal stop)      :: 19 of 77
            Pseudo Genes (multiple problems)  :: 11 of 77
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219220
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-20"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRS01000001-LPRS01000008
WGS_SCAFLD  NZ_LPRS01000001-NZ_LPRS01000008
//
LOCUS       NZ_LPRQ01000000      2220644 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRQ00000000
VERSION     NZ_LPRQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305151
            Assembly: GCF_001560215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2220644)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2220644)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRQ00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRQ00000000.  This version of the
            project (01) has the accession number NZ_LPRQ01000000, and consists
            of sequences LPRQ01000001-LPRQ01000010.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_17
            Genome Coverage       :: 138.0708364x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560215.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:37:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,375
            CDSs (total)                      :: 2,323
            Genes (coding)                    :: 2,271
            CDSs (with protein)               :: 2,271
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 21 of 52
            Pseudo Genes (incomplete)         :: 29 of 52
            Pseudo Genes (internal stop)      :: 11 of 52
            Pseudo Genes (multiple problems)  :: 9 of 52
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220644
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-17"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRQ01000001-LPRQ01000010
WGS_SCAFLD  NZ_LPRQ01000001-NZ_LPRQ01000010
//
LOCUS       NZ_LPRU01000000      2219098 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-22, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRU00000000
VERSION     NZ_LPRU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305155
            Assembly: GCF_001560305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2219098)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2219098)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRU00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRU00000000.  This version of the
            project (01) has the accession number NZ_LPRU01000000, and consists
            of sequences LPRU01000001-LPRU01000012.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_22
            Genome Coverage       :: 82.59101818x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560305.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:46:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,368
            CDSs (total)                      :: 2,317
            Genes (coding)                    :: 2,256
            CDSs (with protein)               :: 2,256
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 25 of 61
            Pseudo Genes (incomplete)         :: 36 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 9 of 61
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219098
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-22"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRU01000001-LPRU01000012
WGS_SCAFLD  NZ_LPRU01000001-NZ_LPRU01000012
//
LOCUS       NZ_LPRH01000000      2220235 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-07, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRH00000000
VERSION     NZ_LPRH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305141
            Assembly: GCF_001560045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2220235)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2220235)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRH00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRH00000000.  This version of the
            project (01) has the accession number NZ_LPRH01000000, and consists
            of sequences LPRH01000001-LPRH01000017.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_07
            Genome Coverage       :: 120.2463273x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560045.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:44:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,371
            CDSs (total)                      :: 2,319
            Genes (coding)                    :: 2,261
            CDSs (with protein)               :: 2,261
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 25 of 58
            Pseudo Genes (incomplete)         :: 31 of 58
            Pseudo Genes (internal stop)      :: 13 of 58
            Pseudo Genes (multiple problems)  :: 10 of 58
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220235
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-07"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRH01000001-LPRH01000017
WGS_SCAFLD  NZ_LPRH01000001-NZ_LPRH01000017
//
LOCUS       NZ_LPRC01000000      2221461 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRC00000000
VERSION     NZ_LPRC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305136
            Assembly: GCF_001559955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2221461)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2221461)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRC00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRC00000000.  This version of the
            project (01) has the accession number NZ_LPRC01000000, and consists
            of sequences LPRC01000001-LPRC01000016.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_01
            Genome Coverage       :: 195.8725455x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001559955.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:43:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,373
            CDSs (total)                      :: 2,322
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 21 of 52
            Pseudo Genes (incomplete)         :: 30 of 52
            Pseudo Genes (internal stop)      :: 10 of 52
            Pseudo Genes (multiple problems)  :: 7 of 52
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221461
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-01"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRC01000001-LPRC01000016
WGS_SCAFLD  NZ_LPRC01000001-NZ_LPRC01000016
//
LOCUS       NZ_LPRD01000000      2271306 bp    DNA     linear   BCT 02-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-02, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRD00000000
VERSION     NZ_LPRD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305137
            Assembly: GCF_001559975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2271306)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2271306)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRD00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRD00000000.  This version of the
            project (01) has the accession number NZ_LPRD01000000, and consists
            of sequences LPRD01000001-LPRD01000008.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_02
            Genome Coverage       :: 102.7777818x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001559975.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:45:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,448
            CDSs (total)                      :: 2,396
            Genes (coding)                    :: 2,357
            CDSs (with protein)               :: 2,357
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 12 of 39
            Pseudo Genes (incomplete)         :: 24 of 39
            Pseudo Genes (internal stop)      :: 10 of 39
            Pseudo Genes (multiple problems)  :: 7 of 39
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271306
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-02"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRD01000001-LPRD01000008
WGS_SCAFLD  NZ_LPRD01000001-NZ_LPRD01000008
//
LOCUS       NZ_JBMHJL010000000   3037428 bp    DNA     linear   BCT 03-APR-2025
DEFINITION  Methanoculleus bourgensis strain MZD129, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMHJL000000000
VERSION     NZ_JBMHJL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45871588
            Assembly: GCF_049178895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus bourgensis
  ORGANISM  Methanoculleus bourgensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 3037428)
  AUTHORS   Chen,J.
  TITLE     Characterization and Genome Analysis of MZD129: A Novel Strain of
            Methanoculleus bourgensis with Enhanced Tolerance to High
            Temperatures and Alkaline Conditions, and Unique Metabolic
            Capabilities
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3037428)
  AUTHORS   Chen,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2024) College of Biotechnology and Pharmaceutical
            Engineering, Nanjing Tech University, Pukou Avenue No. 30, Nanjing,
            Jiangsu Province 210000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMHJL000000000.1.
            The Methanoculleus bourgensis whole genome shotgun (WGS) project
            has the project accession NZ_JBMHJL000000000.  This version of the
            project (01) has the accession number NZ_JBMHJL010000000, and
            consists of sequences JBMHJL010000001-JBMHJL010000967.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 27-MAR-2024
            Assembly Method        :: SPAdes v. 3.15.4; Pilon v. 1.24
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.1x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049178895.1-RS_2025_03_31
            Annotation Date                   :: 03/31/2025 12:46:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,453
            CDSs (total)                      :: 3,397
            Genes (coding)                    :: 3,120
            CDSs (with protein)               :: 3,120
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 277
            CDSs (without protein)            :: 277
            Pseudo Genes (ambiguous residues) :: 0 of 277
            Pseudo Genes (frameshifted)       :: 5 of 277
            Pseudo Genes (incomplete)         :: 272 of 277
            Pseudo Genes (internal stop)      :: 1 of 277
            Pseudo Genes (multiple problems)  :: 1 of 277
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3037428
                     /organism="Methanoculleus bourgensis"
                     /mol_type="genomic DNA"
                     /strain="MZD129"
                     /isolation_source="kitchen waste"
                     /db_xref="taxon:83986"
                     /geo_loc_name="China: Huzhou, Zhejiang province"
                     /collection_date="2023-05-01"
WGS         JBMHJL010000001-JBMHJL010000967
WGS_SCAFLD  NZ_JBMHJL010000001-NZ_JBMHJL010000967
//
LOCUS       NZ_WQOC01000000      1785653 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Methanobrevibacter smithii strain MCC662, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WQOC00000000
VERSION     NZ_WQOC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12147416
            Assembly: GCF_018784305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1785653)
  AUTHORS   Perez,M., Ntemiri,A., Tan,H., Harris,H.M.B., Roager,H.M.,
            Ribiere,C. and O'Toole,P.W.
  TITLE     A synthetic consortium of 100 gut commensals modulates the
            composition and function in a colon model of the microbiome of
            elderly subjects
  JOURNAL   Gut Microbes 13 (1), 1-19 (2021)
   PUBMED   33993839
REFERENCE   2  (bases 1 to 1785653)
  AUTHORS   Harris,H.M.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2019) Microbiology Department, University College
            Cork, Western road, Cork, Cork 0000, Ireland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WQOC00000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_WQOC00000000.  This version of the
            project (01) has the accession number NZ_WQOC01000000, and consists
            of sequences WQOC01000001-WQOC01000097.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 249.769x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018784305.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 16:48:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,806
            CDSs (total)                      :: 1,761
            Genes (coding)                    :: 1,726
            CDSs (with protein)               :: 1,726
            Genes (RNA)                       :: 45
            rRNAs                             :: 3, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 8 of 35
            Pseudo Genes (incomplete)         :: 27 of 35
            Pseudo Genes (internal stop)      :: 5 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785653
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /strain="MCC662"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:2173"
                     /geo_loc_name="Ireland"
                     /lat_lon="51.8985 N 8.4756 W"
WGS         WQOC01000001-WQOC01000097
WGS_SCAFLD  NZ_WQOC01000001-NZ_WQOC01000097
//
LOCUS       NZ_LPSK01000000      2222815 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_04, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSK00000000
VERSION     NZ_LPSK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305171
            Assembly: GCF_001560635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2222815)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2222815)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSK00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSK00000000.  This version of the
            project (01) has the accession number NZ_LPSK01000000, and consists
            of sequences LPSK01000001-LPSK01000005.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_04
            Genome Coverage       :: 151.9238545x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560635.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:48:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,366
            CDSs (total)                      :: 2,314
            Genes (coding)                    :: 2,257
            CDSs (with protein)               :: 2,257
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 27 of 57
            Pseudo Genes (incomplete)         :: 27 of 57
            Pseudo Genes (internal stop)      :: 9 of 57
            Pseudo Genes (multiple problems)  :: 6 of 57
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222815
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_04"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSK01000001-LPSK01000005
WGS_SCAFLD  NZ_LPSK01000001-NZ_LPSK01000005
//
LOCUS       NZ_LPRE01000000      2214215 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-03, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRE00000000
VERSION     NZ_LPRE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305138
            Assembly: GCF_001559965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2214215)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2214215)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRE00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRE00000000.  This version of the
            project (01) has the accession number NZ_LPRE01000000, and consists
            of sequences LPRE01000001-LPRE01000003.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_03
            Genome Coverage       :: 125.9941091x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001559965.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:50:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,360
            CDSs (total)                      :: 2,308
            Genes (coding)                    :: 2,240
            CDSs (with protein)               :: 2,240
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 35 of 68
            Pseudo Genes (incomplete)         :: 29 of 68
            Pseudo Genes (internal stop)      :: 10 of 68
            Pseudo Genes (multiple problems)  :: 6 of 68
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214215
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-03"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRE01000001-LPRE01000003
WGS_SCAFLD  NZ_LPRE01000001-NZ_LPRE01000003
//
LOCUS       NZ_LPRI01000000      2223532 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-08, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRI00000000
VERSION     NZ_LPRI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305142
            Assembly: GCF_001560065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2223532)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2223532)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRI00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRI00000000.  This version of the
            project (01) has the accession number NZ_LPRI01000000, and consists
            of sequences LPRI01000001-LPRI01000006.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_08
            Genome Coverage       :: 48.77752727x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560065.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:50:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,378
            CDSs (total)                      :: 2,327
            Genes (coding)                    :: 2,255
            CDSs (with protein)               :: 2,255
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 37 of 72
            Pseudo Genes (incomplete)         :: 35 of 72
            Pseudo Genes (internal stop)      :: 13 of 72
            Pseudo Genes (multiple problems)  :: 12 of 72
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223532
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-08"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRI01000001-LPRI01000006
WGS_SCAFLD  NZ_LPRI01000001-NZ_LPRI01000006
//
LOCUS       NZ_LPSD01000000      2186789 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C06_07, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSD00000000
VERSION     NZ_LPSD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305164
            Assembly: GCF_001560485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2186789)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2186789)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSD00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSD00000000.  This version of the
            project (01) has the accession number NZ_LPSD01000000, and consists
            of sequences LPSD01000001-LPSD01000018.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C06_07
            Genome Coverage       :: 99.39632727x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560485.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 13:49:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,347
            CDSs (total)                      :: 2,295
            Genes (coding)                    :: 2,241
            CDSs (with protein)               :: 2,241
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 19 of 54
            Pseudo Genes (incomplete)         :: 32 of 54
            Pseudo Genes (internal stop)      :: 9 of 54
            Pseudo Genes (multiple problems)  :: 6 of 54
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186789
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C06_07"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-29"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSD01000001-LPSD01000018
WGS_SCAFLD  NZ_LPSD01000001-NZ_LPSD01000018
//
LOCUS       NZ_LPRL01000000      2217208 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRL00000000
VERSION     NZ_LPRL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305146
            Assembly: GCF_001560125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2217208)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2217208)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRL00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRL00000000.  This version of the
            project (01) has the accession number NZ_LPRL01000000, and consists
            of sequences LPRL01000001-LPRL01000005.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_12
            Genome Coverage       :: 78.6396x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560125.1-RS_2025_04_02
            Annotation Date                   :: 04/02/2025 14:02:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,373
            CDSs (total)                      :: 2,321
            Genes (coding)                    :: 2,252
            CDSs (with protein)               :: 2,252
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 30 of 69
            Pseudo Genes (incomplete)         :: 35 of 69
            Pseudo Genes (internal stop)      :: 11 of 69
            Pseudo Genes (multiple problems)  :: 7 of 69
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217208
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-12"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRL01000001-LPRL01000005
WGS_SCAFLD  NZ_LPRL01000001-NZ_LPRL01000005
//
LOCUS       NZ_LPSA01000000      2185136 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C06_04, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSA00000000
VERSION     NZ_LPSA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305161
            Assembly: GCF_001560435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2185136)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2185136)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSA00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSA00000000.  This version of the
            project (01) has the accession number NZ_LPSA01000000, and consists
            of sequences LPSA01000001-LPSA01000018.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C06_04
            Genome Coverage       :: 109.9627273x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560435.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:23:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,357
            CDSs (total)                      :: 2,305
            Genes (coding)                    :: 2,230
            CDSs (with protein)               :: 2,230
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 29 of 75
            Pseudo Genes (incomplete)         :: 37 of 75
            Pseudo Genes (internal stop)      :: 19 of 75
            Pseudo Genes (multiple problems)  :: 10 of 75
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185136
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C06_04"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-29"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSA01000001-LPSA01000018
WGS_SCAFLD  NZ_LPSA01000001-NZ_LPSA01000018
//
LOCUS       NZ_LPSQ01000000      2179240 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSQ00000000
VERSION     NZ_LPSQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305178
            Assembly: GCF_001560755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2179240)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2179240)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSQ00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSQ00000000.  This version of the
            project (01) has the accession number NZ_LPSQ01000000, and consists
            of sequences LPSQ01000001-LPSQ01000006.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_11
            Genome Coverage       :: 71.27214545x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560755.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:26:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,349
            CDSs (total)                      :: 2,298
            Genes (coding)                    :: 2,238
            CDSs (with protein)               :: 2,238
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 24 of 60
            Pseudo Genes (incomplete)         :: 34 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 6 of 60
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179240
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_11"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSQ01000001-LPSQ01000006
WGS_SCAFLD  NZ_LPSQ01000001-NZ_LPSQ01000006
//
LOCUS       NZ_LPSU01000000      2197529 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSU00000000
VERSION     NZ_LPSU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305182
            Assembly: GCF_001560835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2197529)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2197529)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSU00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSU00000000.  This version of the
            project (01) has the accession number NZ_LPSU01000000, and consists
            of sequences LPSU01000001-LPSU01000004.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_15
            Genome Coverage       :: 156.2284727x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560835.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:25:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,366
            CDSs (total)                      :: 2,314
            Genes (coding)                    :: 2,258
            CDSs (with protein)               :: 2,258
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 25 of 56
            Pseudo Genes (incomplete)         :: 27 of 56
            Pseudo Genes (internal stop)      :: 12 of 56
            Pseudo Genes (multiple problems)  :: 8 of 56
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197529
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_15"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSU01000001-LPSU01000004
WGS_SCAFLD  NZ_LPSU01000001-NZ_LPSU01000004
//
LOCUS       NZ_LPRV01000000      2203701 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05A_C04, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRV00000000
VERSION     NZ_LPRV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305156
            Assembly: GCF_001560315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2203701)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2203701)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRV00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRV00000000.  This version of the
            project (01) has the accession number NZ_LPRV01000000, and consists
            of sequences LPRV01000001-LPRV01000020.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05A_C04
            Genome Coverage       :: 80.68858182x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560315.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:25:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,328
            Genes (coding)                    :: 2,269
            CDSs (with protein)               :: 2,269
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 23 of 59
            Pseudo Genes (incomplete)         :: 33 of 59
            Pseudo Genes (internal stop)      :: 13 of 59
            Pseudo Genes (multiple problems)  :: 10 of 59
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203701
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05A_C04"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-27"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRV01000001-LPRV01000020
WGS_SCAFLD  NZ_LPRV01000001-NZ_LPRV01000020
//
LOCUS       NZ_LPSB01000000      2187212 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C06_05, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSB00000000
VERSION     NZ_LPSB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305162
            Assembly: GCF_001560455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2187212)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2187212)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSB00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSB00000000.  This version of the
            project (01) has the accession number NZ_LPSB01000000, and consists
            of sequences LPSB01000001-LPSB01000017.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C06_05
            Genome Coverage       :: 92.45149091x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560455.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:25:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,354
            CDSs (total)                      :: 2,302
            Genes (coding)                    :: 2,245
            CDSs (with protein)               :: 2,245
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 21 of 57
            Pseudo Genes (incomplete)         :: 32 of 57
            Pseudo Genes (internal stop)      :: 9 of 57
            Pseudo Genes (multiple problems)  :: 5 of 57
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187212
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C06_05"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-29"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSB01000001-LPSB01000017
WGS_SCAFLD  NZ_LPSB01000001-NZ_LPSB01000017
//
LOCUS       NZ_LPRT01000000      2217993 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain GG12-C01-21, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRT00000000
VERSION     NZ_LPRT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305154
            Assembly: GCF_001560285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2217993)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2217993)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRT00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRT00000000.  This version of the
            project (01) has the accession number NZ_LPRT01000000, and consists
            of sequences LPRT01000001-LPRT01000012.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: GG12_C01_21
            Genome Coverage       :: 109.1962909x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560285.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:25:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,367
            CDSs (total)                      :: 2,315
            Genes (coding)                    :: 2,245
            CDSs (with protein)               :: 2,245
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 1 of 70
            Pseudo Genes (frameshifted)       :: 39 of 70
            Pseudo Genes (incomplete)         :: 29 of 70
            Pseudo Genes (internal stop)      :: 13 of 70
            Pseudo Genes (multiple problems)  :: 11 of 70
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217993
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="GG12-C01-21"
                     /isolation_source="GG12 hot spring, Gibbon Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-26"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRT01000001-LPRT01000012
WGS_SCAFLD  NZ_LPRT01000001-NZ_LPRT01000012
//
LOCUS       NZ_LPSG01000000      2224052 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C06_13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSG00000000
VERSION     NZ_LPSG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305167
            Assembly: GCF_001560555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2224052)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2224052)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSG00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSG00000000.  This version of the
            project (01) has the accession number NZ_LPSG01000000, and consists
            of sequences LPSG01000001-LPSG01000010.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C06_13
            Genome Coverage       :: 137.5261818x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560555.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:24:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,395
            CDSs (total)                      :: 2,343
            Genes (coding)                    :: 2,283
            CDSs (with protein)               :: 2,283
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 22 of 60
            Pseudo Genes (incomplete)         :: 36 of 60
            Pseudo Genes (internal stop)      :: 14 of 60
            Pseudo Genes (multiple problems)  :: 11 of 60
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2224052
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C06_13"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-29"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSG01000001-LPSG01000010
WGS_SCAFLD  NZ_LPSG01000001-NZ_LPSG01000010
//
LOCUS       NZ_LPSP01000000      2240047 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSP00000000
VERSION     NZ_LPSP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305177
            Assembly: GCF_001560725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2240047)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2240047)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSP00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSP00000000.  This version of the
            project (01) has the accession number NZ_LPSP01000000, and consists
            of sequences LPSP01000001-LPSP01000007.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_10
            Genome Coverage       :: 60.2264x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560725.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:25:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,427
            CDSs (total)                      :: 2,375
            Genes (coding)                    :: 2,340
            CDSs (with protein)               :: 2,340
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 10 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 6 of 35
            Pseudo Genes (multiple problems)  :: 2 of 35
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240047
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_10"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSP01000001-LPSP01000007
WGS_SCAFLD  NZ_LPSP01000001-NZ_LPSP01000007
//
LOCUS       NZ_LPSR01000000      2234381 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSR00000000
VERSION     NZ_LPSR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305179
            Assembly: GCF_001560765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2234381)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2234381)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSR00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSR00000000.  This version of the
            project (01) has the accession number NZ_LPSR01000000, and consists
            of sequences LPSR01000001-LPSR01000007.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_12
            Genome Coverage       :: 215.5510182x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560765.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:27:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,403
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,275
            CDSs (with protein)               :: 2,275
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 44 of 76
            Pseudo Genes (incomplete)         :: 31 of 76
            Pseudo Genes (internal stop)      :: 12 of 76
            Pseudo Genes (multiple problems)  :: 11 of 76
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234381
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_12"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSR01000001-LPSR01000007
WGS_SCAFLD  NZ_LPSR01000001-NZ_LPSR01000007
//
LOCUS       NZ_LPSN01000000      2178872 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_08, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSN00000000
VERSION     NZ_LPSN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305175
            Assembly: GCF_001560685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2178872)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2178872)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSN00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSN00000000.  This version of the
            project (01) has the accession number NZ_LPSN01000000, and consists
            of sequences LPSN01000001-LPSN01000008.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_08
            Genome Coverage       :: 86.98156364x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560685.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:28:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,347
            CDSs (total)                      :: 2,296
            Genes (coding)                    :: 2,237
            CDSs (with protein)               :: 2,237
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 24 of 59
            Pseudo Genes (incomplete)         :: 32 of 59
            Pseudo Genes (internal stop)      :: 8 of 59
            Pseudo Genes (multiple problems)  :: 5 of 59
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178872
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_08"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSN01000001-LPSN01000008
WGS_SCAFLD  NZ_LPSN01000001-NZ_LPSN01000008
//
LOCUS       NZ_LPSL01000000      2216858 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_05, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSL00000000
VERSION     NZ_LPSL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305172
            Assembly: GCF_001560645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2216858)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2216858)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSL00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSL00000000.  This version of the
            project (01) has the accession number NZ_LPSL01000000, and consists
            of sequences LPSL01000001-LPSL01000019.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_05
            Genome Coverage       :: 108.6149455x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560645.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:27:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,391
            CDSs (total)                      :: 2,337
            Genes (coding)                    :: 2,276
            CDSs (with protein)               :: 2,276
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 24 of 61
            Pseudo Genes (incomplete)         :: 34 of 61
            Pseudo Genes (internal stop)      :: 12 of 61
            Pseudo Genes (multiple problems)  :: 9 of 61
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216858
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_05"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSL01000001-LPSL01000019
WGS_SCAFLD  NZ_LPSL01000001-NZ_LPSL01000019
//
LOCUS       NZ_LPSM01000000      2241819 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_CO5_06, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPSM00000000
VERSION     NZ_LPSM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305173
            Assembly: GCF_001560675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2241819)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2241819)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPSM00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPSM00000000.  This version of the
            project (01) has the accession number NZ_LPSM01000000, and consists
            of sequences LPSM01000001-LPSM01000007.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_CO5_06
            Genome Coverage       :: 79.76425455x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560675.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:27:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,428
            CDSs (total)                      :: 2,376
            Genes (coding)                    :: 2,321
            CDSs (with protein)               :: 2,321
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 26 of 55
            Pseudo Genes (incomplete)         :: 27 of 55
            Pseudo Genes (internal stop)      :: 20 of 55
            Pseudo Genes (multiple problems)  :: 17 of 55
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241819
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_CO5_06"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-28"
                     /collected_by="A. Kouris, UIUC"
WGS         LPSM01000001-LPSM01000007
WGS_SCAFLD  NZ_LPSM01000001-NZ_LPSM01000007
//
LOCUS       NZ_LPRY01000000      2255808 bp    DNA     linear   BCT 04-APR-2025
DEFINITION  Sulfolobus acidocaldarius strain NG05B_C06_02, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LPRY00000000
VERSION     NZ_LPRY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04305159
            Assembly: GCF_001560385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1  (bases 1 to 2255808)
  AUTHORS   Anderson,R., Kouris,A., Seward,C., Campbell,K. and Whitaker,R.
  TITLE     A stable core within a dynamic pangenome in Sulfolobus
            acidocaldarius
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2255808)
  AUTHORS   Whitaker,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2015) Carl R. Woese Institute for Genomic
            Biology, University of Illinois at Urbana-Champaign, 1206 West
            Gregory Drive | MC-195, Urbana, IL 61801, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LPRY00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_LPRY00000000.  This version of the
            project (01) has the accession number NZ_LPRY01000000, and consists
            of sequences LPRY01000001-LPRY01000018.
            Source DNA available from R. Whitaker, UIUC.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: a5 v. 2014-04
            Assembly Name         :: NG05B_C06_02
            Genome Coverage       :: 70.31501818x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001560385.1-RS_2025_04_03
            Annotation Date                   :: 04/03/2025 13:24:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,448
            CDSs (total)                      :: 2,395
            Genes (coding)                    :: 2,337
            CDSs (with protein)               :: 2,337
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 21 of 58
            Pseudo Genes (incomplete)         :: 34 of 58
            Pseudo Genes (internal stop)      :: 12 of 58
            Pseudo Genes (multiple problems)  :: 9 of 58
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255808
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="NG05B_C06_02"
                     /isolation_source="NG05 hot spring, Norris Geyser Basin"
                     /db_xref="taxon:2285"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /collection_date="2012-09-29"
                     /collected_by="A. Kouris, UIUC"
WGS         LPRY01000001-LPRY01000018
WGS_SCAFLD  NZ_LPRY01000001-NZ_LPRY01000018
//
LOCUS       NZ_WRXM01000000      3906684 bp    DNA     linear   BCT 05-APR-2025
DEFINITION  Haloarcula limicola strain YGHS32, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WRXM00000000
VERSION     NZ_WRXM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13386517
            Assembly: GCF_010119205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula limicola
  ORGANISM  Haloarcula limicola
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3906684)
  AUTHORS   Zhang,W.J. and Cui,H.L.
  TITLE     Halomicroarcula limicola sp. nov., isolated from a marine solar
            saltern, and emended description of the genus Halomicroarcula
  JOURNAL   Int J Syst Evol Microbiol 64 (Pt 5), 1747-1751 (2014)
   PUBMED   24554639
REFERENCE   2  (bases 1 to 3906684)
  AUTHORS   Zhang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2019) Department of Biology, Anhui Normal
            University, No. 1 Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WRXM00000000.1.
            The Haloarcula limicola whole genome shotgun (WGS) project has the
            project accession NZ_WRXM00000000.  This version of the project
            (01) has the accession number NZ_WRXM01000000, and consists of
            sequences WRXM01000001-WRXM01000007.
            Bacteria and source DNA available from solar saltern.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010119205.1-RS_2025_04_04
            Annotation Date                   :: 04/04/2025 15:30:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,974
            CDSs (total)                      :: 3,922
            Genes (coding)                    :: 3,891
            CDSs (with protein)               :: 3,891
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 7 of 31
            Pseudo Genes (incomplete)         :: 28 of 31
            Pseudo Genes (internal stop)      :: 4 of 31
            Pseudo Genes (multiple problems)  :: 5 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906684
                     /organism="Haloarcula limicola"
                     /mol_type="genomic DNA"
                     /strain="YGHS32"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halomicroarcula limicola"
                     /db_xref="taxon:1429915"
                     /geo_loc_name="China: Hainan"
                     /collected_by="Henglin Cui"
WGS         WRXM01000001-WRXM01000007
WGS_SCAFLD  NZ_WRXM01000001-NZ_WRXM01000007
//
LOCUS       NZ_JBAPNC010000000   2432485 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD01207_ilm_asm_bin1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAPNC000000000
VERSION     NZ_JBAPNC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40007972
            Assembly: GCF_049278935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2432485)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2432485)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAPNC000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAPNC000000000.  This version of the project
            (01) has the accession number NZ_JBAPNC010000000, and consists of
            sequences JBAPNC010000001-JBAPNC010000273.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 30-NOV-2023
            Assembly Method           :: MegaHit v. (v1.2.9)
            Assembly Name             :: MFD01207_ilm_asm_bin1
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NA
            Genome Coverage           :: 30x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049278935.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:18:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,600
            CDSs (total)                      :: 2,546
            Genes (coding)                    :: 2,488
            CDSs (with protein)               :: 2,488
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 3 of 58
            Pseudo Genes (incomplete)         :: 49 of 58
            Pseudo Genes (internal stop)      :: 6 of 58
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432485
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD01207_ilm_asm_bin1"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.13997 N 10.27084 E"
                     /collection_date="2020-05-20"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAPNC010000001-JBAPNC010000273
WGS_SCAFLD  NZ_JBAPNC010000001-NZ_JBAPNC010000273
//
LOCUS       NZ_JBAPQY010000000   2060844 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD00971_ilm_asm_bin5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAPQY000000000
VERSION     NZ_JBAPQY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40007872
            Assembly: GCF_049280855.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2060844)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2060844)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAPQY000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAPQY000000000.  This version of the project
            (01) has the accession number NZ_JBAPQY010000000, and consists of
            sequences JBAPQY010000001-JBAPQY010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 30-NOV-2023
            Assembly Method           :: MegaHit v. (v1.2.9)
            Assembly Name             :: MFD00971_ilm_asm_bin5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NA
            Genome Coverage           :: 30x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049280855.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:16:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,148
            CDSs (total)                      :: 2,097
            Genes (coding)                    :: 2,078
            CDSs (with protein)               :: 2,078
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 0 of 19
            Pseudo Genes (incomplete)         :: 19 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2060844
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD00971_ilm_asm_bin5"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.01602 N 9.1474 E"
                     /collection_date="2020-05-12"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAPQY010000001-JBAPQY010000059
WGS_SCAFLD  NZ_JBAPQY010000001-NZ_JBAPQY010000059
//
LOCUS       NZ_JBAPYN010000000   2283821 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD00306_ilm_asm_bin20, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAPYN000000000
VERSION     NZ_JBAPYN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40007675
            Assembly: GCF_049284755.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2283821)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2283821)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAPYN000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAPYN000000000.  This version of the project
            (01) has the accession number NZ_JBAPYN010000000, and consists of
            sequences JBAPYN010000001-JBAPYN010000154.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 30-NOV-2023
            Assembly Method           :: MegaHit v. (v1.2.9)
            Assembly Name             :: MFD00306_ilm_asm_bin20
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NA
            Genome Coverage           :: 30x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049284755.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:22:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,423
            CDSs (total)                      :: 2,372
            Genes (coding)                    :: 2,337
            CDSs (with protein)               :: 2,337
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 2 of 35
            Pseudo Genes (incomplete)         :: 33 of 35
            Pseudo Genes (internal stop)      :: 0 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283821
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD00306_ilm_asm_bin20"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.2243 N 10.5626 E"
                     /collection_date="2014-11-13"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAPYN010000001-JBAPYN010000154
WGS_SCAFLD  NZ_JBAPYN010000001-NZ_JBAPYN010000154
//
LOCUS       NZ_JBAPYM010000000   2070585 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD00306_ilm_asm_bin6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAPYM000000000
VERSION     NZ_JBAPYM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40007676
            Assembly: GCF_049284735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2070585)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2070585)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAPYM000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAPYM000000000.  This version of the project
            (01) has the accession number NZ_JBAPYM010000000, and consists of
            sequences JBAPYM010000001-JBAPYM010000206.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 30-NOV-2023
            Assembly Method           :: MegaHit v. (v1.2.9)
            Assembly Name             :: MFD00306_ilm_asm_bin6
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NA
            Genome Coverage           :: 30x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049284735.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:21:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,221
            CDSs (total)                      :: 2,169
            Genes (coding)                    :: 2,109
            CDSs (with protein)               :: 2,109
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 0 of 60
            Pseudo Genes (incomplete)         :: 60 of 60
            Pseudo Genes (internal stop)      :: 0 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070585
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD00306_ilm_asm_bin6"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.2243 N 10.5626 E"
                     /collection_date="2014-11-13"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAPYM010000001-JBAPYM010000206
WGS_SCAFLD  NZ_JBAPYM010000001-NZ_JBAPYM010000206
//
LOCUS       NZ_JBAQHI010000000   2293071 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD01112_ilm_asm_bin14, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQHI000000000
VERSION     NZ_JBAQHI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010239
            Assembly: GCF_049288235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2293071)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2293071)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQHI000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQHI000000000.  This version of the project
            (01) has the accession number NZ_JBAQHI010000000, and consists of
            sequences JBAQHI010000001-JBAQHI010000130.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049288235.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:26:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,418
            CDSs (total)                      :: 2,365
            Genes (coding)                    :: 2,325
            CDSs (with protein)               :: 2,325
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 1 of 40
            Pseudo Genes (incomplete)         :: 38 of 40
            Pseudo Genes (internal stop)      :: 2 of 40
            Pseudo Genes (multiple problems)  :: 1 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293071
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD01112_ilm_asm_bin14"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.89679 N 8.39621 E"
                     /collection_date="2020-10-14"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAQHI010000001-JBAQHI010000130
WGS_SCAFLD  NZ_JBAQHI010000001-NZ_JBAQHI010000130
//
LOCUS       NZ_JBAQHN010000000   2145071 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD09592_ilm_asm_bin42, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQHN000000000
VERSION     NZ_JBAQHN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010234
            Assembly: GCF_049288335.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2145071)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2145071)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQHN000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQHN000000000.  This version of the project
            (01) has the accession number NZ_JBAQHN010000000, and consists of
            sequences JBAQHN010000001-JBAQHN010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049288335.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:25:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,239
            CDSs (total)                      :: 2,183
            Genes (coding)                    :: 2,161
            CDSs (with protein)               :: 2,161
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 22 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145071
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD09592_ilm_asm_bin42"
                     /isolation_source="Soil from Natural Temperate heath and
                     scrub"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.98712 N 12.32161 E"
                     /collection_date="2021-10-11"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAQHN010000001-JBAQHN010000078
WGS_SCAFLD  NZ_JBAQHN010000001-NZ_JBAQHN010000078
//
LOCUS       NZ_JBAQHH010000000   2042840 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD01112_ilm_asm_bin15, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQHH000000000
VERSION     NZ_JBAQHH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010240
            Assembly: GCF_049288215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2042840)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2042840)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQHH000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQHH000000000.  This version of the project
            (01) has the accession number NZ_JBAQHH010000000, and consists of
            sequences JBAQHH010000001-JBAQHH010000100.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049288215.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:30:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,140
            CDSs (total)                      :: 2,090
            Genes (coding)                    :: 2,058
            CDSs (with protein)               :: 2,058
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 1 of 32
            Pseudo Genes (incomplete)         :: 31 of 32
            Pseudo Genes (internal stop)      :: 0 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042840
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD01112_ilm_asm_bin15"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.89679 N 8.39621 E"
                     /collection_date="2020-10-14"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAQHH010000001-JBAQHH010000100
WGS_SCAFLD  NZ_JBAQHH010000001-NZ_JBAQHH010000100
//
LOCUS       NZ_JBAQGZ010000000   2133663 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD09594_ilm_asm_bin17, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQGZ000000000
VERSION     NZ_JBAQGZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010248
            Assembly: GCF_049288055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2133663)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2133663)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQGZ000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQGZ000000000.  This version of the project
            (01) has the accession number NZ_JBAQGZ010000000, and consists of
            sequences JBAQGZ010000001-JBAQGZ010000177.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049288055.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:27:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,275
            CDSs (total)                      :: 2,227
            Genes (coding)                    :: 2,179
            CDSs (with protein)               :: 2,179
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 2 of 48
            Pseudo Genes (incomplete)         :: 46 of 48
            Pseudo Genes (internal stop)      :: 1 of 48
            Pseudo Genes (multiple problems)  :: 1 of 48
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133663
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD09594_ilm_asm_bin17"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="57.1923 N 10.2611 E"
                     /collection_date="2021-10-16"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAQGZ010000001-JBAQGZ010000177
WGS_SCAFLD  NZ_JBAQGZ010000001-NZ_JBAQGZ010000177
//
LOCUS       NZ_JBAQEK010000000   2252183 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD10555_ilm_asm_bin20, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQEK000000000
VERSION     NZ_JBAQEK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010315
            Assembly: GCF_049286685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2252183)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2252183)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQEK000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQEK000000000.  This version of the project
            (01) has the accession number NZ_JBAQEK010000000, and consists of
            sequences JBAQEK010000001-JBAQEK010000165.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049286685.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:47:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,367
            CDSs (total)                      :: 2,315
            Genes (coding)                    :: 2,230
            CDSs (with protein)               :: 2,230
            Genes (RNA)                       :: 52
            rRNAs                             :: 3, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 17 of 85
            Pseudo Genes (incomplete)         :: 78 of 85
            Pseudo Genes (internal stop)      :: 11 of 85
            Pseudo Genes (multiple problems)  :: 17 of 85
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252183
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD10555_ilm_asm_bin20"
                     /isolation_source="Water from Urban Wastewater"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.7675 N 8.8598 E"
                     /collection_date="2019-10-09"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBAQEK010000001-JBAQEK010000165
WGS_SCAFLD  NZ_JBAQEK010000001-NZ_JBAQEK010000165
//
LOCUS       NZ_JBATRR010000000   2157880 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD10484_ilm_asm_bin37, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBATRR000000000
VERSION     NZ_JBATRR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010025
            Assembly: GCF_049292715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2157880)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2157880)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBATRR000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBATRR000000000.  This version of the project
            (01) has the accession number NZ_JBATRR010000000, and consists of
            sequences JBATRR010000001-JBATRR010000203.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049292715.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:51:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,255
            CDSs (total)                      :: 2,208
            Genes (coding)                    :: 2,142
            CDSs (with protein)               :: 2,142
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 5 of 66
            Pseudo Genes (incomplete)         :: 62 of 66
            Pseudo Genes (internal stop)      :: 5 of 66
            Pseudo Genes (multiple problems)  :: 5 of 66
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2157880
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD10484_ilm_asm_bin37"
                     /isolation_source="Water from Urban Wastewater"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.4584 N 8.49 E"
                     /collection_date="2019-11-07"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBATRR010000001-JBATRR010000203
WGS_SCAFLD  NZ_JBATRR010000001-NZ_JBATRR010000203
//
LOCUS       NZ_JBAQCE010000000   2122397 bp    DNA     linear   ENV 05-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD10570_ilm_asm_bin18, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQCE000000000
VERSION     NZ_JBAQCE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010373
            Assembly: GCF_049293935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2122397)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2122397)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQCE000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQCE000000000.  This version of the project
            (01) has the accession number NZ_JBAQCE010000000, and consists of
            sequences JBAQCE010000001-JBAQCE010000202.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049293935.1-RS_2025_04_05
            Annotation Date                   :: 04/05/2025 03:57:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,223
            CDSs (total)                      :: 2,179
            Genes (coding)                    :: 2,120
            CDSs (with protein)               :: 2,120
            Genes (RNA)                       :: 44
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 7 of 59
            Pseudo Genes (incomplete)         :: 57 of 59
            Pseudo Genes (internal stop)      :: 4 of 59
            Pseudo Genes (multiple problems)  :: 8 of 59
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122397
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD10570_ilm_asm_bin18"
                     /isolation_source="Water from Urban Wastewater"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.9702 N 9.2701 E"
                     /collection_date="2019-10-30"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBAQCE010000001-JBAQCE010000202
WGS_SCAFLD  NZ_JBAQCE010000001-NZ_JBAQCE010000202
//
LOCUS       NZ_JBAQWE010000000   3774663 bp    DNA     linear   ENV 06-APR-2025
DEFINITION  MAG: Methanosarcina sp. isolate MFD12012_ilm_asm_bin7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQWE000000000
VERSION     NZ_JBAQWE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010452
            Assembly: GCF_049298735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosarcina sp. (Water metagenome)
  ORGANISM  Methanosarcina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3774663)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3774663)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQWE000000000.1.
            The Methanosarcina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQWE000000000.  This version of the project
            (01) has the accession number NZ_JBAQWE010000000, and consists of
            sequences JBAQWE010000001-JBAQWE010000087.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049298735.1-RS_2025_04_06
            Annotation Date                   :: 04/06/2025 12:44:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,281
            CDSs (total)                      :: 3,222
            Genes (coding)                    :: 3,169
            CDSs (with protein)               :: 3,169
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1 (5S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 22 of 53
            Pseudo Genes (incomplete)         :: 43 of 53
            Pseudo Genes (internal stop)      :: 15 of 53
            Pseudo Genes (multiple problems)  :: 22 of 53
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774663
                     /organism="Methanosarcina sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD12012_ilm_asm_bin7"
                     /isolation_source="Water from Subterranean Freshwater"
                     /db_xref="taxon:2213"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.3546 N 11.687 E"
                     /collection_date="2019-01-01"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBAQWE010000001-JBAQWE010000087
WGS_SCAFLD  NZ_JBAQWE010000001-NZ_JBAQWE010000087
//
LOCUS       NZ_JBAQRE010000000   2110078 bp    DNA     linear   ENV 06-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD10553_ilm_asm_bin50, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQRE000000000
VERSION     NZ_JBAQRE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010582
            Assembly: GCF_049295855.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2110078)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2110078)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQRE000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQRE000000000.  This version of the project
            (01) has the accession number NZ_JBAQRE010000000, and consists of
            sequences JBAQRE010000001-JBAQRE010000206.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049295855.1-RS_2025_04_06
            Annotation Date                   :: 04/06/2025 12:50:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,197
            CDSs (total)                      :: 2,148
            Genes (coding)                    :: 2,083
            CDSs (with protein)               :: 2,083
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 6 of 65
            Pseudo Genes (incomplete)         :: 62 of 65
            Pseudo Genes (internal stop)      :: 6 of 65
            Pseudo Genes (multiple problems)  :: 8 of 65
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110078
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD10553_ilm_asm_bin50"
                     /isolation_source="Water from Urban Wastewater"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.4584 N 8.49 E"
                     /collection_date="2019-11-07"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBAQRE010000001-JBAQRE010000206
WGS_SCAFLD  NZ_JBAQRE010000001-NZ_JBAQRE010000206
//
LOCUS       NZ_JBAQLL010000000   2733090 bp    DNA     linear   ENV 06-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD12031_ilm_asm_bin15, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQLL000000000
VERSION     NZ_JBAQLL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010732
            Assembly: GCF_049301795.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Soil metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2733090)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2733090)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQLL000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQLL000000000.  This version of the project
            (01) has the accession number NZ_JBAQLL010000000, and consists of
            sequences JBAQLL010000001-JBAQLL010000055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049301795.1-RS_2025_04_06
            Annotation Date                   :: 04/06/2025 12:54:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,859
            CDSs (total)                      :: 2,806
            Genes (coding)                    :: 2,766
            CDSs (with protein)               :: 2,766
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 9 of 40
            Pseudo Genes (incomplete)         :: 35 of 40
            Pseudo Genes (internal stop)      :: 7 of 40
            Pseudo Genes (multiple problems)  :: 7 of 40
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733090
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD12031_ilm_asm_bin15"
                     /isolation_source="Soil from Subterranean Urban"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /collection_date="2020-12-01"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAQLL010000001-JBAQLL010000055
WGS_SCAFLD  NZ_JBAQLL010000001-NZ_JBAQLL010000055
//
LOCUS       NZ_JBAQVU010000000   2521778 bp    DNA     linear   ENV 06-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD10572_ilm_asm_bin22, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQVU000000000
VERSION     NZ_JBAQVU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010462
            Assembly: GCF_049298515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2521778)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2521778)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQVU000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQVU000000000.  This version of the project
            (01) has the accession number NZ_JBAQVU010000000, and consists of
            sequences JBAQVU010000001-JBAQVU010000359.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049298515.1-RS_2025_04_06
            Annotation Date                   :: 04/06/2025 12:51:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,805
            CDSs (total)                      :: 2,757
            Genes (coding)                    :: 2,630
            CDSs (with protein)               :: 2,630
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 9 of 127
            Pseudo Genes (incomplete)         :: 123 of 127
            Pseudo Genes (internal stop)      :: 2 of 127
            Pseudo Genes (multiple problems)  :: 6 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2521778
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD10572_ilm_asm_bin22"
                     /isolation_source="Water from Urban Wastewater"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.7412 N 10.1158 E"
                     /collection_date="2019-10-09"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBAQVU010000001-JBAQVU010000359
WGS_SCAFLD  NZ_JBAQVU010000001-NZ_JBAQVU010000359
//
LOCUS       NZ_JBAQLZ010000000   2756167 bp    DNA     linear   ENV 06-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD12106_ilm_asm_bin3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQLZ000000000
VERSION     NZ_JBAQLZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010718
            Assembly: GCF_049302295.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2756167)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2756167)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQLZ000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQLZ000000000.  This version of the project
            (01) has the accession number NZ_JBAQLZ010000000, and consists of
            sequences JBAQLZ010000001-JBAQLZ010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049302295.1-RS_2025_04_06
            Annotation Date                   :: 04/06/2025 12:53:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,833
            CDSs (total)                      :: 2,783
            Genes (coding)                    :: 2,733
            CDSs (with protein)               :: 2,733
            Genes (RNA)                       :: 50
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 8 of 50
            Pseudo Genes (incomplete)         :: 47 of 50
            Pseudo Genes (internal stop)      :: 4 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2756167
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD12106_ilm_asm_bin3"
                     /isolation_source="Water from Subterranean Freshwater"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /collection_date="2021-09-01"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBAQLZ010000001-JBAQLZ010000059
WGS_SCAFLD  NZ_JBAQLZ010000001-NZ_JBAQLZ010000059
//
LOCUS       NZ_JBAQLG010000000   2604160 bp    DNA     linear   ENV 06-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD12032_ilm_asm_bin7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAQLG000000000
VERSION     NZ_JBAQLG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40010737
            Assembly: GCF_049301695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Soil metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2604160)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2604160)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAQLG000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAQLG000000000.  This version of the project
            (01) has the accession number NZ_JBAQLG010000000, and consists of
            sequences JBAQLG010000001-JBAQLG010000119.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049301695.1-RS_2025_04_06
            Annotation Date                   :: 04/06/2025 12:54:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,747
            CDSs (total)                      :: 2,702
            Genes (coding)                    :: 2,644
            CDSs (with protein)               :: 2,644
            Genes (RNA)                       :: 45
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 6 of 58
            Pseudo Genes (incomplete)         :: 53 of 58
            Pseudo Genes (internal stop)      :: 6 of 58
            Pseudo Genes (multiple problems)  :: 4 of 58
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604160
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD12032_ilm_asm_bin7"
                     /isolation_source="Soil from Subterranean Urban"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /collection_date="2020-12-01"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAQLG010000001-JBAQLG010000119
WGS_SCAFLD  NZ_JBAQLG010000001-NZ_JBAQLG010000119
//
LOCUS       NZ_MTNA01000000      2279225 bp    DNA     linear   ENV 07-APR-2025
DEFINITION  MAG: Archaeoglobus sp. JdFR-39, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MTNA00000000
VERSION     NZ_MTNA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06226356
            Assembly: GCF_002010295.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Archaeoglobus sp. JdFR-39 (subsurface metagenome)
  ORGANISM  Archaeoglobus sp. JdFR-39
            Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi;
            Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
REFERENCE   1  (bases 1 to 2279225)
  AUTHORS   Jungbluth,S.P., Amend,J.P. and Rappe,M.S.
  TITLE     Metagenome sequencing and 98 microbial genomes from Juan de Fuca
            Ridge flank subsurface fluids
  JOURNAL   Sci Data 4, 170037 (2017)
   PUBMED   28350381
  REMARK    Erratum:[Sci Data. 2017 Jul 04;4:170080. doi:
            10.1038/sdata.2017.80. PMID: 28675380]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279225)
  AUTHORS   Jungbluth,S.P. and Rappe,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JAN-2017) Center for Dark Energy Biosphere
            Investigations, University of Southern California, 3651 Trousdale
            Parkway ZHS, Los Angeles, CA 90089, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MTNA00000000.1.
            The Archaeoglobus sp. JdFR-39 whole genome shotgun (WGS) project
            has the project accession NZ_MTNA00000000.  This version of the
            project (01) has the accession number NZ_MTNA01000000, and consists
            of sequences MTNA01000001-MTNA01000093.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 1.05; Newbler v. 2.7;
                                      minimus2 (AMOS) v. 3.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 2660.1x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002010295.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 06:37:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,650
            CDSs (total)                      :: 2,599
            Genes (coding)                    :: 2,565
            CDSs (with protein)               :: 2,565
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 17 of 34
            Pseudo Genes (incomplete)         :: 28 of 34
            Pseudo Genes (internal stop)      :: 4 of 34
            Pseudo Genes (multiple problems)  :: 13 of 34
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279225
                     /organism="Archaeoglobus sp. JdFR-39"
                     /mol_type="genomic DNA"
                     /isolate="JdFR-39"
                     /isolation_source="basaltic crustal fluids"
                     /db_xref="taxon:1934996"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="47.76 N 127.76 W"
                     /collection_date="2011-07-12"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         MTNA01000001-MTNA01000093
WGS_SCAFLD  NZ_MTNA01000001-NZ_MTNA01000093
//
LOCUS       NZ_DAZM01000000      2176051 bp    DNA     linear   ENV 07-APR-2025
DEFINITION  MAG: Archaeoglobus sp. UBA231, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAZM00000000
VERSION     NZ_DAZM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027498
            Sequence Read Archive: SRR5037069
            Assembly: GCF_002507315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Archaeoglobus sp. UBA231 (marine sediment metagenome)
  ORGANISM  Archaeoglobus sp. UBA231
            Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi;
            Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
REFERENCE   1  (bases 1 to 2176051)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2176051)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAZM00000000.1.
            The Archaeoglobus sp. UBA231 whole genome shotgun (WGS) project has
            the project accession NZ_DAZM00000000.  This version of the project
            (01) has the accession number NZ_DAZM01000000, and consists of
            sequences DAZM01000001-DAZM01000045.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 1231.74x
            Sequencing Technology :: Illumina HiSeq 1000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002507315.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:31:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,565
            CDSs (total)                      :: 2,516
            Genes (coding)                    :: 2,493
            CDSs (with protein)               :: 2,493
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 14 of 23
            Pseudo Genes (incomplete)         :: 19 of 23
            Pseudo Genes (internal stop)      :: 3 of 23
            Pseudo Genes (multiple problems)  :: 11 of 23
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176051
                     /organism="Archaeoglobus sp. UBA231"
                     /mol_type="genomic DNA"
                     /isolate="UBA231"
                     /isolation_source="sediment"
                     /db_xref="taxon:1915566"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /metagenome_source="marine sediment metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX742693"
WGS         DAZM01000001-DAZM01000045
WGS_SCAFLD  NZ_DAZM01000001-NZ_DAZM01000045
//
LOCUS       NZ_DAXS01000000      1848818 bp    DNA     linear   ENV 07-APR-2025
DEFINITION  MAG: Caldivirga sp. UBA161, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAXS00000000
VERSION     NZ_DAXS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027409
            Sequence Read Archive: SRR5036904
            Assembly: GCF_002506515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Caldivirga sp. UBA161 (hot springs metagenome)
  ORGANISM  Caldivirga sp. UBA161
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Caldivirga.
REFERENCE   1  (bases 1 to 1848818)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 1848818)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAXS00000000.1.
            The Caldivirga sp. UBA161 whole genome shotgun (WGS) project has
            the project accession NZ_DAXS00000000.  This version of the project
            (01) has the accession number NZ_DAXS01000000, and consists of
            sequences DAXS01000001-DAXS01000087.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 43.87x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002506515.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:22:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,964
            CDSs (total)                      :: 1,929
            Genes (coding)                    :: 1,860
            CDSs (with protein)               :: 1,860
            Genes (RNA)                       :: 35
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 32
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 17 of 69
            Pseudo Genes (incomplete)         :: 59 of 69
            Pseudo Genes (internal stop)      :: 8 of 69
            Pseudo Genes (multiple problems)  :: 10 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848818
                     /organism="Caldivirga sp. UBA161"
                     /mol_type="genomic DNA"
                     /isolate="UBA161"
                     /isolation_source="water"
                     /db_xref="taxon:1915569"
                     /environmental_sample
                     /geo_loc_name="Taiwan: Shi-Huang-Ping hot spring"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX532417"
WGS         DAXS01000001-DAXS01000087
WGS_SCAFLD  NZ_DAXS01000001-NZ_DAXS01000087
//
LOCUS       NZ_MTLX02000000      1742258 bp    DNA     linear   ENV 07-APR-2025
DEFINITION  MAG: Candidatus Hecatella orcuttiae isolate JdFR-10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_MTLX00000000
VERSION     NZ_MTLX00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06226327
            Assembly: GCF_002009985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Hecatella orcuttiae (subsurface metagenome)
  ORGANISM  Candidatus Hecatella orcuttiae
            Archaea; Candidatus Bathyarchaeota; Candidatus Bathyarchaeia;
            Candidatus Hecatellales; Candidatus Hecatellaceae; Candidatus
            Hecatella.
REFERENCE   1  (bases 1 to 1742258)
  AUTHORS   Adam,P.S., Kolyfetis,G.E., Bornemann,T.L.V., Vorgias,C.E. and
            Probst,A.J.
  TITLE     Genomic remnants of ancestral methanogenesis and hydrogenotrophy in
            Archaea drive anaerobic carbon cycling
  JOURNAL   Sci Adv (2022) In press
REFERENCE   2  (bases 1 to 1742258)
  AUTHORS   Jungbluth,S.P., Amend,J.P. and Rappe,M.S.
  TITLE     Metagenome sequencing and 98 microbial genomes from Juan de Fuca
            Ridge flank subsurface fluids
  JOURNAL   Sci Data 4, 170037 (2017)
   PUBMED   28350381
  REMARK    Erratum:[Sci Data. 2017 Jul 04;4:170080. doi:
            10.1038/sdata.2017.80. PMID: 28675380]
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1742258)
  AUTHORS   Adam,P.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2022) Environmental Microbiology & Biotechnology,
            University of Duisburg-Essen, Universitaetsstrasse 5, Essen 45141,
            Germany
REFERENCE   4  (bases 1 to 1742258)
  AUTHORS   Jungbluth,S.P. and Rappe,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2017) Center for Dark Energy Biosphere
            Investigations, University of Southern California, 3651 Trousdale
            Parkway ZHS, Los Angeles, CA 90089, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MTLX00000000.2.
            The Candidatus Hecatella orcuttiae whole genome shotgun (WGS)
            project has the project accession NZ_MTLX00000000.  This version of
            the project (02) has the accession number NZ_MTLX02000000, and
            consists of sequences MTLX02000001-MTLX02000009.
            The version 01 assembly was binned from the reads in SAMN03166137
            and SAMN03166138, while the version 02 assembly used only the reads
            from SAMN03166138 (SRX1888493).
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-OCT-2022
            Assembly Method        :: metaSPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 51x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002009985.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 11:51:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,930
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,858
            CDSs (with protein)               :: 1,858
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 3 of 20
            Pseudo Genes (incomplete)         :: 11 of 20
            Pseudo Genes (internal stop)      :: 6 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742258
                     /organism="Candidatus Hecatella orcuttiae"
                     /mol_type="genomic DNA"
                     /isolate="JdFR-10"
                     /isolation_source="basaltic crustal fluids"
                     /db_xref="taxon:1935119"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="47.76 N 127.76 W"
                     /metagenome_source="subsurface metagenome"
                     /metagenomic
WGS         MTLX02000001-MTLX02000009
WGS_SCAFLD  NZ_MTLX02000001-NZ_MTLX02000009
//
LOCUS       NZ_DSFH01000000      1050234 bp    DNA     linear   ENV 07-APR-2025
DEFINITION  MAG: Fervidicoccus fontis isolate SpSt-1261, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DSFH00000000
VERSION     NZ_DSFH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09639186
            Assembly: GCF_011057105.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Fervidicoccus fontis (hot springs metagenome)
  ORGANISM  Fervidicoccus fontis
            Archaea; Thermoproteota; Thermoprotei; Fervidicoccales;
            Fervidicoccaceae; Fervidicoccus.
REFERENCE   1  (bases 1 to 1050234)
  AUTHORS   Zhou,Z., Liu,Y., Xu,W., Pan,J., Luo,Z.H. and Li,M.
  TITLE     Genome- and Community-Level Interaction Insights into Carbon
            Utilization and Element Cycling Functions of Hydrothermarchaeota in
            Hydrothermal Sediment
  JOURNAL   mSystems 5 (1), e00795-19 (2020)
   PUBMED   31911466
  REMARK    Erratum:[mSystems. 2022 Oct 26;7(5):e0075022. doi:
            10.1128/msystems.00750-22. PMID: 35993865]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1050234)
  AUTHORS   Zhou,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2018) School of Biological Sciences, The
            University of Hong Kong, Kadoorie Biological Sciences Building,
            Hong Kong, Hong Kong
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DSFH00000000.1.
            The Fervidicoccus fontis whole genome shotgun (WGS) project has the
            project accession NZ_DSFH00000000.  This version of the project
            (01) has the accession number NZ_DSFH01000000, and consists of
            sequences DSFH01000001-DSFH01000068.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.61x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011057105.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 10:57:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,143
            CDSs (total)                      :: 1,109
            Genes (coding)                    :: 1,094
            CDSs (with protein)               :: 1,094
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 2 of 15
            Pseudo Genes (incomplete)         :: 14 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050234
                     /organism="Fervidicoccus fontis"
                     /mol_type="genomic DNA"
                     /isolate="SpSt-1261"
                     /isolation_source="hot spring"
                     /db_xref="taxon:683846"
                     /environmental_sample
                     /geo_loc_name="Russia: Uzon Caldera, Kamchatka, Arkashin
                     hot spring"
                     /lat_lon="54.300 N 160.02 E"
                     /collection_date="2004-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
                     /note="Metagenome-assembled genome binned from sequencing
                     reads available in SRR6344961"
WGS         DSFH01000001-DSFH01000068
WGS_SCAFLD  NZ_DSFH01000001-NZ_DSFH01000068
//
LOCUS       NZ_JAQCNJ010000000   2309319 bp    DNA     linear   ENV 07-APR-2025
DEFINITION  MAG: Haloplanus sp. isolate LUM.53, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAQCNJ000000000
VERSION     NZ_JAQCNJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32192796
            Assembly: GCF_028275055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Haloplanus sp. (hypersaline lake metagenome)
  ORGANISM  Haloplanus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 2309319)
  AUTHORS   Kheiri,R., Mehrshad,M., Pourbabaee,A.A., Ventosa,A. and
            Amoozegar,M.A.
  TITLE     Hypersaline Lake Urmia: a potential hotspot for microbial genomic
            variation
  JOURNAL   Sci Rep 13 (1), 374 (2023)
   PUBMED   36611086
  REMARK    Erratum:[Sci Rep. 2023 Feb 10;13(1):2424. doi:
            10.1038/s41598-023-29691-w. PMID: 36765130]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309319)
  AUTHORS   Kheiri,R., Mehrshad,M., Pourbabaee,A.A., Ventosa,A. and
            Amoozegar,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2022) Microbiology, Tehran University, Enqelab,
            Tehran, Tehran 3136648673, Iran
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQCNJ000000000.1.
            The Haloplanus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQCNJ000000000.  This version of the project
            (01) has the accession number NZ_JAQCNJ010000000, and consists of
            sequences JAQCNJ010000001-JAQCNJ010000102.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-MAY-2021
            Assembly Method        :: MetaBAT v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028275055.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 11:42:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,476
            CDSs (total)                      :: 2,429
            Genes (coding)                    :: 2,354
            CDSs (with protein)               :: 2,354
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 13 of 75
            Pseudo Genes (incomplete)         :: 62 of 75
            Pseudo Genes (internal stop)      :: 4 of 75
            Pseudo Genes (multiple problems)  :: 4 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309319
                     /organism="Haloplanus sp."
                     /mol_type="genomic DNA"
                     /isolate="LUM.53"
                     /isolation_source="hyper saline lake"
                     /db_xref="taxon:1961696"
                     /environmental_sample
                     /geo_loc_name="Iran: West Azarbayejan, Lake Urmia"
                     /lat_lon="37.78243195 N 45.30924322 E"
                     /collection_date="2020-10-01"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JAQCNJ010000001-JAQCNJ010000102
WGS_SCAFLD  NZ_JAQCNJ010000001-NZ_JAQCNJ010000102
//
LOCUS       NZ_JAQCNH010000000   3531334 bp    DNA     linear   ENV 07-APR-2025
DEFINITION  MAG: Halorientalis sp. isolate LUM.68, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQCNH000000000
VERSION     NZ_JAQCNH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32192799
            Assembly: GCF_028275115.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halorientalis sp. (hypersaline lake metagenome)
  ORGANISM  Halorientalis sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1  (bases 1 to 3531334)
  AUTHORS   Kheiri,R., Mehrshad,M., Pourbabaee,A.A., Ventosa,A. and
            Amoozegar,M.A.
  TITLE     Hypersaline Lake Urmia: a potential hotspot for microbial genomic
            variation
  JOURNAL   Sci Rep 13 (1), 374 (2023)
   PUBMED   36611086
  REMARK    Erratum:[Sci Rep. 2023 Feb 10;13(1):2424. doi:
            10.1038/s41598-023-29691-w. PMID: 36765130]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3531334)
  AUTHORS   Kheiri,R., Mehrshad,M., Pourbabaee,A.A., Ventosa,A. and
            Amoozegar,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2022) Microbiology, Tehran University, Enqelab,
            Tehran, Tehran 3136648673, Iran
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQCNH000000000.1.
            The Halorientalis sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQCNH000000000.  This version of the project
            (01) has the accession number NZ_JAQCNH010000000, and consists of
            sequences JAQCNH010000001-JAQCNH010000150.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-MAY-2021
            Assembly Method        :: MetaBAT v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028275115.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 11:48:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,673
            CDSs (total)                      :: 3,624
            Genes (coding)                    :: 3,490
            CDSs (with protein)               :: 3,490
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 44
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 43 of 134
            Pseudo Genes (incomplete)         :: 101 of 134
            Pseudo Genes (internal stop)      :: 24 of 134
            Pseudo Genes (multiple problems)  :: 27 of 134
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531334
                     /organism="Halorientalis sp."
                     /mol_type="genomic DNA"
                     /isolate="LUM.68"
                     /isolation_source="hyper saline lake"
                     /db_xref="taxon:1931229"
                     /environmental_sample
                     /geo_loc_name="Iran: West Azarbayejan, Lake Urmia"
                     /lat_lon="37.78243195 N 45.30924322 E"
                     /collection_date="2020-10-01"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JAQCNH010000001-JAQCNH010000150
WGS_SCAFLD  NZ_JAQCNH010000001-NZ_JAQCNH010000150
//
LOCUS       NZ_JAXCMF010000000   4000899 bp    DNA     linear   BCT 07-APR-2025
DEFINITION  Halogeometricum borinquense strain E3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXCMF000000000
VERSION     NZ_JAXCMF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37881090
            Assembly: GCF_040679015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum borinquense
  ORGANISM  Halogeometricum borinquense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1  (bases 1 to 4000899)
  AUTHORS   Nagar,D.N., Mani,K. and Braganca,J.M.
  TITLE     Genomic insights on carotenoid synthesis by extremely halophilic
            archaea Haloarcula rubripromontorii BS2, Haloferax lucentense BBK2
            and Halogeometricum borinquense E3 isolated from the solar salterns
            of India
  JOURNAL   Sci Rep 14 (1), 20214 (2024)
   PUBMED   39215047
  REMARK    Erratum:[Sci Rep. 2024 Oct 10;14(1):23750. doi:
            10.1038/s41598-024-74079-z. PMID: 39390113]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4000899)
  AUTHORS   Braganca,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2023) Biological Science, BITS Goa campus, BITS
            Pilani K K Birla Goa Campus, Zuarinagar, Goa, Goa 403726, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXCMF000000000.1.
            The Halogeometricum borinquense whole genome shotgun (WGS) project
            has the project accession NZ_JAXCMF000000000.  This version of the
            project (01) has the accession number NZ_JAXCMF010000000, and
            consists of sequences JAXCMF010000001-JAXCMF010000028.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SKESA v. 2.4.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 572.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040679015.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 14:54:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,051
            CDSs (total)                      :: 3,994
            Genes (coding)                    :: 3,914
            CDSs (with protein)               :: 3,914
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 32 of 80
            Pseudo Genes (incomplete)         :: 57 of 80
            Pseudo Genes (internal stop)      :: 8 of 80
            Pseudo Genes (multiple problems)  :: 17 of 80
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4000899
                     /organism="Halogeometricum borinquense"
                     /mol_type="genomic DNA"
                     /strain="E3"
                     /isolation_source="Sediment"
                     /db_xref="taxon:60847"
                     /geo_loc_name="India: Marakkanam, Tamil Nadu"
                     /lat_lon="12.14 N 79.55 E"
                     /collection_date="2011-03"
WGS         JAXCMF010000001-JAXCMF010000028
WGS_SCAFLD  NZ_JAXCMF010000001-NZ_JAXCMF010000028
//
LOCUS       NZ_JAWJXX010000000   4125613 bp    DNA     linear   BCT 07-APR-2025
DEFINITION  Haloarcula rubripromontorii strain BS2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWJXX000000000
VERSION     NZ_JAWJXX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37855089
            Assembly: GCF_040743285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula rubripromontorii
  ORGANISM  Haloarcula rubripromontorii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4125613)
  AUTHORS   Nagar,D.N., Mani,K. and Braganca,J.M.
  TITLE     Genomic insights on carotenoid synthesis by extremely halophilic
            archaea Haloarcula rubripromontorii BS2, Haloferax lucentense BBK2
            and Halogeometricum borinquense E3 isolated from the solar salterns
            of India
  JOURNAL   Sci Rep 14 (1), 20214 (2024)
   PUBMED   39215047
  REMARK    Erratum:[Sci Rep. 2024 Oct 10;14(1):23750. doi:
            10.1038/s41598-024-74079-z. PMID: 39390113]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4125613)
  AUTHORS   Braganca,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2023) Biological Science, BITS Goa campus, BITS
            Pilani K K Birla Goa Campus, Zuarinagar, Goa, Goa 403726, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWJXX000000000.1.
            The Haloarcula rubripromontorii whole genome shotgun (WGS) project
            has the project accession NZ_JAWJXX000000000.  This version of the
            project (01) has the accession number NZ_JAWJXX010000000, and
            consists of sequences JAWJXX010000001-JAWJXX010000022.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SKESA v. 2.4.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 547.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040743285.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 14:58:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,271
            CDSs (total)                      :: 4,211
            Genes (coding)                    :: 4,152
            CDSs (with protein)               :: 4,152
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 2, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2 (5S, 16S)
            partial rRNAs                     :: 6 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 24 of 59
            Pseudo Genes (incomplete)         :: 45 of 59
            Pseudo Genes (internal stop)      :: 16 of 59
            Pseudo Genes (multiple problems)  :: 21 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125613
                     /organism="Haloarcula rubripromontorii"
                     /mol_type="genomic DNA"
                     /strain="BS2"
                     /isolation_source="Sediment"
                     /db_xref="taxon:1705562"
                     /geo_loc_name="India: Ribandar, Goa"
                     /lat_lon="15.30 N 73.51 E"
                     /collection_date="2011-03"
WGS         JAWJXX010000001-JAWJXX010000022
WGS_SCAFLD  NZ_JAWJXX010000001-NZ_JAWJXX010000022
//
LOCUS       NZ_JAWLKZ010000000   3825065 bp    DNA     linear   BCT 07-APR-2025
DEFINITION  Haloferax volcanii strain BBK2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAWLKZ000000000
VERSION     NZ_JAWLKZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37800915
            Assembly: GCF_040869255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3825065)
  AUTHORS   Nagar,D.N., Mani,K. and Braganca,J.M.
  TITLE     Genomic insights on carotenoid synthesis by extremely halophilic
            archaea Haloarcula rubripromontorii BS2, Haloferax lucentense BBK2
            and Halogeometricum borinquense E3 isolated from the solar salterns
            of India
  JOURNAL   Sci Rep 14 (1), 20214 (2024)
   PUBMED   39215047
  REMARK    Erratum:[Sci Rep. 2024 Oct 10;14(1):23750. doi:
            10.1038/s41598-024-74079-z. PMID: 39390113]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3825065)
  AUTHORS   Braganca,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2023) Biological Science, BITS Goa campus, BITS
            Pilani K K Birla Goa Campus, Zuarinagar, Goa, Goa 403726, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWLKZ000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JAWLKZ000000000.  This version of the project
            (01) has the accession number NZ_JAWLKZ010000000, and consists of
            sequences JAWLKZ010000001-JAWLKZ010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SKESA v. 2.4.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 571.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040869255.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 15:00:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,880
            CDSs (total)                      :: 3,818
            Genes (coding)                    :: 3,747
            CDSs (with protein)               :: 3,747
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 30 of 71
            Pseudo Genes (incomplete)         :: 43 of 71
            Pseudo Genes (internal stop)      :: 15 of 71
            Pseudo Genes (multiple problems)  :: 15 of 71
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825065
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="BBK2"
                     /isolation_source="Sediment"
                     /db_xref="taxon:2246"
                     /geo_loc_name="India: Ribandar, Goa"
                     /lat_lon="15.30 N 73.51 E"
                     /collection_date="2011-03"
WGS         JAWLKZ010000001-JAWLKZ010000037
WGS_SCAFLD  NZ_JAWLKZ010000001-NZ_JAWLKZ010000037
//
LOCUS       NZ_DAGJ01000000      1677215 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanobrevibacter sp. UBA412, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAGJ00000000
VERSION     NZ_DAGJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027510
            Sequence Read Archive: SRR5036749
            Assembly: GCF_002495685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter sp. UBA412 (fermentation metagenome)
  ORGANISM  Methanobrevibacter sp. UBA412
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1677215)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 1677215)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAGJ00000000.1.
            The Methanobrevibacter sp. UBA412 whole genome shotgun (WGS)
            project has the project accession NZ_DAGJ00000000.  This version of
            the project (01) has the accession number NZ_DAGJ01000000, and
            consists of sequences DAGJ01000001-DAGJ01000026.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 90.11x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002495685.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:07:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,661
            CDSs (total)                      :: 1,627
            Genes (coding)                    :: 1,609
            CDSs (with protein)               :: 1,609
            Genes (RNA)                       :: 34
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 2 of 18
            Pseudo Genes (incomplete)         :: 16 of 18
            Pseudo Genes (internal stop)      :: 0 of 18
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677215
                     /organism="Methanobrevibacter sp. UBA412"
                     /mol_type="genomic DNA"
                     /isolate="UBA412"
                     /isolation_source="mud"
                     /db_xref="taxon:1915486"
                     /environmental_sample
                     /geo_loc_name="China: Mianyang"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691286"
WGS         DAGJ01000001-DAGJ01000026
WGS_SCAFLD  NZ_DAGJ01000001-NZ_DAGJ01000026
//
LOCUS       NZ_DAJF01000000      1693261 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanobrevibacter sp. UBA337, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAJF00000000
VERSION     NZ_DAJF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027485
            Sequence Read Archive: SRR5036649
            Assembly: GCF_002496295.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter sp. UBA337 (fermentation metagenome)
  ORGANISM  Methanobrevibacter sp. UBA337
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1693261)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 1693261)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAJF00000000.1.
            The Methanobrevibacter sp. UBA337 whole genome shotgun (WGS)
            project has the project accession NZ_DAJF00000000.  This version of
            the project (01) has the accession number NZ_DAJF01000000, and
            consists of sequences DAJF01000001-DAJF01000044.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 22.02x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002496295.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:06:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,696
            CDSs (total)                      :: 1,662
            Genes (coding)                    :: 1,640
            CDSs (with protein)               :: 1,640
            Genes (RNA)                       :: 34
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 1 of 22
            Pseudo Genes (incomplete)         :: 21 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693261
                     /organism="Methanobrevibacter sp. UBA337"
                     /mol_type="genomic DNA"
                     /isolate="UBA337"
                     /isolation_source="mud"
                     /db_xref="taxon:1915480"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691279"
WGS         DAJF01000001-DAJF01000044
WGS_SCAFLD  NZ_DAJF01000001-NZ_DAJF01000044
//
LOCUS       NZ_DAWJ01000000      1616184 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanobrevibacter sp. UBA46, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAWJ00000000
VERSION     NZ_DAWJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027021
            Sequence Read Archive: SRR5036688
            Assembly: GCF_002508825.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter sp. UBA46 (fermentation metagenome)
  ORGANISM  Methanobrevibacter sp. UBA46
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1616184)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 1616184)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAWJ00000000.1.
            The Methanobrevibacter sp. UBA46 whole genome shotgun (WGS) project
            has the project accession NZ_DAWJ00000000.  This version of the
            project (01) has the accession number NZ_DAWJ01000000, and consists
            of sequences DAWJ01000001-DAWJ01000075.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 29.95x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508825.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:11:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,647
            CDSs (total)                      :: 1,620
            Genes (coding)                    :: 1,568
            CDSs (with protein)               :: 1,568
            Genes (RNA)                       :: 27
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 24
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 3 of 52
            Pseudo Genes (incomplete)         :: 51 of 52
            Pseudo Genes (internal stop)      :: 0 of 52
            Pseudo Genes (multiple problems)  :: 2 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616184
                     /organism="Methanobrevibacter sp. UBA46"
                     /mol_type="genomic DNA"
                     /isolate="UBA46"
                     /isolation_source="mud"
                     /db_xref="taxon:1915488"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691269"
WGS         DAWJ01000001-DAWJ01000075
WGS_SCAFLD  NZ_DAWJ01000001-NZ_DAWJ01000075
//
LOCUS       NZ_DAZC01000000      1694158 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanobrevibacter sp. UBA417, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAZC00000000
VERSION     NZ_DAZC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027282
            Sequence Read Archive: SRR5036747
            Assembly: GCF_002508845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter sp. UBA417 (fermentation metagenome)
  ORGANISM  Methanobrevibacter sp. UBA417
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1694158)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 1694158)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAZC00000000.1.
            The Methanobrevibacter sp. UBA417 whole genome shotgun (WGS)
            project has the project accession NZ_DAZC00000000.  This version of
            the project (01) has the accession number NZ_DAZC01000000, and
            consists of sequences DAZC01000001-DAZC01000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 85.16x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508845.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:12:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,705
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,639
            CDSs (with protein)               :: 1,639
            Genes (RNA)                       :: 33
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 5 of 33
            Pseudo Genes (incomplete)         :: 29 of 33
            Pseudo Genes (internal stop)      :: 0 of 33
            Pseudo Genes (multiple problems)  :: 1 of 33
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694158
                     /organism="Methanobrevibacter sp. UBA417"
                     /mol_type="genomic DNA"
                     /isolate="UBA417"
                     /isolation_source="mud"
                     /db_xref="taxon:1915487"
                     /environmental_sample
                     /geo_loc_name="China: Mianyang"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691284"
WGS         DAZC01000001-DAZC01000037
WGS_SCAFLD  NZ_DAZC01000001-NZ_DAZC01000037
//
LOCUS       NZ_DAHN01000000      2337248 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanobrevibacter sp. UBA212, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAHN00000000
VERSION     NZ_DAHN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027108
            Sequence Read Archive: SRR5036802
            Assembly: GCF_002498445.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter sp. UBA212 (gut metagenome)
  ORGANISM  Methanobrevibacter sp. UBA212
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2337248)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2337248)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAHN00000000.1.
            The Methanobrevibacter sp. UBA212 whole genome shotgun (WGS)
            project has the project accession NZ_DAHN00000000.  This version of
            the project (01) has the accession number NZ_DAHN01000000, and
            consists of sequences DAHN01000001-DAHN01000051.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 42.85x
            Sequencing Technology :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002498445.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:09:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,215
            CDSs (total)                      :: 2,183
            Genes (coding)                    :: 2,108
            CDSs (with protein)               :: 2,108
            Genes (RNA)                       :: 32
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 6 of 75
            Pseudo Genes (incomplete)         :: 71 of 75
            Pseudo Genes (internal stop)      :: 2 of 75
            Pseudo Genes (multiple problems)  :: 2 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337248
                     /organism="Methanobrevibacter sp. UBA212"
                     /mol_type="genomic DNA"
                     /isolate="UBA212"
                     /isolation_source="Rumen fluid"
                     /db_xref="taxon:1915476"
                     /environmental_sample
                     /metagenome_source="gut metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     ERX1064490"
WGS         DAHN01000001-DAHN01000051
WGS_SCAFLD  NZ_DAHN01000001-NZ_DAHN01000051
//
LOCUS       NZ_DAXC01000000      1646101 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanobrevibacter sp. UBA313, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAXC00000000
VERSION     NZ_DAXC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027163
            Sequence Read Archive: SRR5036897
            Assembly: GCF_002509655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter sp. UBA313 (fermentation metagenome)
  ORGANISM  Methanobrevibacter sp. UBA313
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1646101)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 1646101)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAXC00000000.1.
            The Methanobrevibacter sp. UBA313 whole genome shotgun (WGS)
            project has the project accession NZ_DAXC00000000.  This version of
            the project (01) has the accession number NZ_DAXC01000000, and
            consists of sequences DAXC01000001-DAXC01000048.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 32.26x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002509655.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:10:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,648
            CDSs (total)                      :: 1,614
            Genes (coding)                    :: 1,588
            CDSs (with protein)               :: 1,588
            Genes (RNA)                       :: 34
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 3 of 26
            Pseudo Genes (incomplete)         :: 23 of 26
            Pseudo Genes (internal stop)      :: 0 of 26
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646101
                     /organism="Methanobrevibacter sp. UBA313"
                     /mol_type="genomic DNA"
                     /isolate="UBA313"
                     /isolation_source="mud"
                     /db_xref="taxon:1915477"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691277"
WGS         DAXC01000001-DAXC01000048
WGS_SCAFLD  NZ_DAXC01000001-NZ_DAXC01000048
//
LOCUS       NZ_DAQC01000000      2381305 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoregula sp. UBA64, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAQC00000000
VERSION     NZ_DAQC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027271
            Sequence Read Archive: SRR5037149
            Assembly: GCF_002502735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoregula sp. UBA64 (soil metagenome)
  ORGANISM  Methanoregula sp. UBA64
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2381305)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2381305)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAQC00000000.1.
            The Methanoregula sp. UBA64 whole genome shotgun (WGS) project has
            the project accession NZ_DAQC00000000.  This version of the project
            (01) has the accession number NZ_DAQC01000000, and consists of
            sequences DAQC01000001-DAQC01000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 166.46x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002502735.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:11:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,468
            CDSs (total)                      :: 2,412
            Genes (coding)                    :: 2,401
            CDSs (with protein)               :: 2,401
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 0 of 11
            Pseudo Genes (incomplete)         :: 11 of 11
            Pseudo Genes (internal stop)      :: 0 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381305
                     /organism="Methanoregula sp. UBA64"
                     /mol_type="genomic DNA"
                     /isolate="UBA64"
                     /isolation_source="soil"
                     /db_xref="taxon:1915554"
                     /environmental_sample
                     /metagenome_source="soil metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX118448"
WGS         DAQC01000001-DAQC01000012
WGS_SCAFLD  NZ_DAQC01000001-NZ_DAQC01000012
//
LOCUS       NZ_DAVC01000000      2288087 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanobrevibacter sp. UBA188, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAVC00000000
VERSION     NZ_DAVC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027456
            Sequence Read Archive: SRR5037087
            Assembly: GCF_002509015.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter sp. UBA188 (gut metagenome)
  ORGANISM  Methanobrevibacter sp. UBA188
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2288087)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2288087)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAVC00000000.1.
            The Methanobrevibacter sp. UBA188 whole genome shotgun (WGS)
            project has the project accession NZ_DAVC00000000.  This version of
            the project (01) has the accession number NZ_DAVC01000000, and
            consists of sequences DAVC01000001-DAVC01000089.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 11.89x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002509015.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:12:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,247
            CDSs (total)                      :: 2,212
            Genes (coding)                    :: 2,145
            CDSs (with protein)               :: 2,145
            Genes (RNA)                       :: 35
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 15 of 67
            Pseudo Genes (incomplete)         :: 48 of 67
            Pseudo Genes (internal stop)      :: 5 of 67
            Pseudo Genes (multiple problems)  :: 1 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2288087
                     /organism="Methanobrevibacter sp. UBA188"
                     /mol_type="genomic DNA"
                     /isolate="UBA188"
                     /isolation_source="Rumen fluid"
                     /db_xref="taxon:1915473"
                     /environmental_sample
                     /metagenome_source="gut metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     ERX1064483"
WGS         DAVC01000001-DAVC01000089
WGS_SCAFLD  NZ_DAVC01000001-NZ_DAVC01000089
//
LOCUS       NZ_DAWF01000000      2562724 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA340, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAWF00000000
VERSION     NZ_DAWF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027440
            Sequence Read Archive: SRR5037101
            Assembly: GCF_002508725.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA340 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA340
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2562724)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2562724)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAWF00000000.1.
            The Methanoculleus sp. UBA340 whole genome shotgun (WGS) project
            has the project accession NZ_DAWF00000000.  This version of the
            project (01) has the accession number NZ_DAWF01000000, and consists
            of sequences DAWF01000001-DAWF01000082.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 296.8x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508725.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:13:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,770
            CDSs (total)                      :: 2,713
            Genes (coding)                    :: 2,618
            CDSs (with protein)               :: 2,618
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 6 of 95
            Pseudo Genes (incomplete)         :: 88 of 95
            Pseudo Genes (internal stop)      :: 3 of 95
            Pseudo Genes (multiple problems)  :: 2 of 95
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562724
                     /organism="Methanoculleus sp. UBA340"
                     /mol_type="genomic DNA"
                     /isolate="UBA340"
                     /isolation_source="mud"
                     /db_xref="taxon:1915504"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691278"
WGS         DAWF01000001-DAWF01000082
WGS_SCAFLD  NZ_DAWF01000001-NZ_DAWF01000082
//
LOCUS       NZ_DATR01000000      2531132 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA389, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DATR00000000
VERSION     NZ_DATR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027529
            Sequence Read Archive: SRR5037068
            Assembly: GCF_002508675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA389 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA389
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2531132)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2531132)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DATR00000000.1.
            The Methanoculleus sp. UBA389 whole genome shotgun (WGS) project
            has the project accession NZ_DATR00000000.  This version of the
            project (01) has the accession number NZ_DATR01000000, and consists
            of sequences DATR01000001-DATR01000098.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 476.54x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508675.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:15:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,746
            CDSs (total)                      :: 2,693
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 5 of 89
            Pseudo Genes (incomplete)         :: 84 of 89
            Pseudo Genes (internal stop)      :: 2 of 89
            Pseudo Genes (multiple problems)  :: 2 of 89
            CRISPR Arrays                     :: 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531132
                     /organism="Methanoculleus sp. UBA389"
                     /mol_type="genomic DNA"
                     /isolate="UBA389"
                     /isolation_source="mud"
                     /db_xref="taxon:1915507"
                     /environmental_sample
                     /geo_loc_name="China: Chengdu"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691282"
WGS         DATR01000001-DATR01000098
WGS_SCAFLD  NZ_DATR01000001-NZ_DATR01000098
//
LOCUS       NZ_DAVF01000000      2537737 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA45, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAVF00000000
VERSION     NZ_DAVF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027022
            Sequence Read Archive: SRR5036975
            Assembly: GCF_002509545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA45 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA45
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2537737)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2537737)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAVF00000000.1.
            The Methanoculleus sp. UBA45 whole genome shotgun (WGS) project has
            the project accession NZ_DAVF00000000.  This version of the project
            (01) has the accession number NZ_DAVF01000000, and consists of
            sequences DAVF01000001-DAVF01000101.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 75.5x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002509545.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:16:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,733
            CDSs (total)                      :: 2,682
            Genes (coding)                    :: 2,605
            CDSs (with protein)               :: 2,605
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 6 of 77
            Pseudo Genes (incomplete)         :: 71 of 77
            Pseudo Genes (internal stop)      :: 1 of 77
            Pseudo Genes (multiple problems)  :: 1 of 77
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537737
                     /organism="Methanoculleus sp. UBA45"
                     /mol_type="genomic DNA"
                     /isolate="UBA45"
                     /isolation_source="mud"
                     /db_xref="taxon:1915512"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691269"
WGS         DAVF01000001-DAVF01000101
WGS_SCAFLD  NZ_DAVF01000001-NZ_DAVF01000101
//
LOCUS       NZ_DAKJ01000000      3633235 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanosarcina sp. UBA289, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAKJ00000000
VERSION     NZ_DAKJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027062
            Sequence Read Archive: SRR5036980
            Assembly: GCF_002496565.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosarcina sp. UBA289 (fermentation metagenome)
  ORGANISM  Methanosarcina sp. UBA289
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3633235)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 3633235)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAKJ00000000.1.
            The Methanosarcina sp. UBA289 whole genome shotgun (WGS) project
            has the project accession NZ_DAKJ00000000.  This version of the
            project (01) has the accession number NZ_DAKJ01000000, and consists
            of sequences DAKJ01000001-DAKJ01000031.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 248.39x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002496565.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:12:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,167
            CDSs (total)                      :: 3,112
            Genes (coding)                    :: 3,059
            CDSs (with protein)               :: 3,059
            Genes (RNA)                       :: 55
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 22 of 53
            Pseudo Genes (incomplete)         :: 41 of 53
            Pseudo Genes (internal stop)      :: 7 of 53
            Pseudo Genes (multiple problems)  :: 16 of 53
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3633235
                     /organism="Methanosarcina sp. UBA289"
                     /mol_type="genomic DNA"
                     /isolate="UBA289"
                     /isolation_source="mud"
                     /db_xref="taxon:1915574"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691273"
WGS         DAKJ01000001-DAKJ01000031
WGS_SCAFLD  NZ_DAKJ01000001-NZ_DAKJ01000031
//
LOCUS       NZ_DAXW01000000      2715796 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA430, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAXW00000000
VERSION     NZ_DAXW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027562
            Sequence Read Archive: SRR5036914
            Assembly: GCF_002506585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA430 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA430
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2715796)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2715796)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAXW00000000.1.
            The Methanoculleus sp. UBA430 whole genome shotgun (WGS) project
            has the project accession NZ_DAXW00000000.  This version of the
            project (01) has the accession number NZ_DAXW01000000, and consists
            of sequences DAXW01000001-DAXW01000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 134.63x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002506585.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:15:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,721
            CDSs (total)                      :: 2,674
            Genes (coding)                    :: 2,643
            CDSs (with protein)               :: 2,643
            Genes (RNA)                       :: 47
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 3 of 31
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2715796
                     /organism="Methanoculleus sp. UBA430"
                     /mol_type="genomic DNA"
                     /isolate="UBA430"
                     /isolation_source="mud"
                     /db_xref="taxon:1915511"
                     /environmental_sample
                     /geo_loc_name="China: Mianyang"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691285"
WGS         DAXW01000001-DAXW01000016
WGS_SCAFLD  NZ_DAXW01000001-NZ_DAXW01000016
//
LOCUS       NZ_DAIY01000000      2677071 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA416, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAIY00000000
VERSION     NZ_DAIY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027283
            Sequence Read Archive: SRR5037178
            Assembly: GCF_002508665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA416 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA416
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2677071)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2677071)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIY00000000.1.
            The Methanoculleus sp. UBA416 whole genome shotgun (WGS) project
            has the project accession NZ_DAIY00000000.  This version of the
            project (01) has the accession number NZ_DAIY01000000, and consists
            of sequences DAIY01000001-DAIY01000041.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 118.11x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508665.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:13:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,795
            CDSs (total)                      :: 2,740
            Genes (coding)                    :: 2,684
            CDSs (with protein)               :: 2,684
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 8 of 56
            Pseudo Genes (incomplete)         :: 49 of 56
            Pseudo Genes (internal stop)      :: 3 of 56
            Pseudo Genes (multiple problems)  :: 4 of 56
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2677071
                     /organism="Methanoculleus sp. UBA416"
                     /mol_type="genomic DNA"
                     /isolate="UBA416"
                     /isolation_source="mud"
                     /db_xref="taxon:1915510"
                     /environmental_sample
                     /geo_loc_name="China: Mianyang"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691286"
WGS         DAIY01000001-DAIY01000041
WGS_SCAFLD  NZ_DAIY01000001-NZ_DAIY01000041
//
LOCUS       NZ_DANY01000000      2661957 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA303, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DANY00000000
VERSION     NZ_DANY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027359
            Sequence Read Archive: SRR5036886
            Assembly: GCF_002501655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA303 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA303
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2661957)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2661957)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DANY00000000.1.
            The Methanoculleus sp. UBA303 whole genome shotgun (WGS) project
            has the project accession NZ_DANY00000000.  This version of the
            project (01) has the accession number NZ_DANY01000000, and consists
            of sequences DANY01000001-DANY01000055.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 144.15x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002501655.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:15:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,616
            CDSs (total)                      :: 2,571
            Genes (coding)                    :: 2,539
            CDSs (with protein)               :: 2,539
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 2 of 32
            Pseudo Genes (incomplete)         :: 26 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661957
                     /organism="Methanoculleus sp. UBA303"
                     /mol_type="genomic DNA"
                     /isolate="UBA303"
                     /isolation_source="mud"
                     /db_xref="taxon:1915497"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691270"
WGS         DANY01000001-DANY01000055
WGS_SCAFLD  NZ_DANY01000001-NZ_DANY01000055
//
LOCUS       NZ_DAGX01000000      2338920 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanofollis sp. UBA420, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAGX00000000
VERSION     NZ_DAGX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027382
            Sequence Read Archive: SRR5036734
            Assembly: GCF_002498315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanofollis sp. UBA420 (fermentation metagenome)
  ORGANISM  Methanofollis sp. UBA420
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanofollis.
REFERENCE   1  (bases 1 to 2338920)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2338920)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAGX00000000.1.
            The Methanofollis sp. UBA420 whole genome shotgun (WGS) project has
            the project accession NZ_DAGX00000000.  This version of the project
            (01) has the accession number NZ_DAGX01000000, and consists of
            sequences DAGX01000001-DAGX01000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 51.97x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002498315.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:12:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,361
            CDSs (total)                      :: 2,307
            Genes (coding)                    :: 2,289
            CDSs (with protein)               :: 2,289
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 0 of 18
            Pseudo Genes (incomplete)         :: 17 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            Pseudo Genes (multiple problems)  :: 1 of 18
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338920
                     /organism="Methanofollis sp. UBA420"
                     /mol_type="genomic DNA"
                     /isolate="UBA420"
                     /isolation_source="mud"
                     /db_xref="taxon:1915514"
                     /environmental_sample
                     /geo_loc_name="China: Mianyang"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691284"
WGS         DAGX01000001-DAGX01000007
WGS_SCAFLD  NZ_DAGX01000001-NZ_DAGX01000007
//
LOCUS       NZ_DANC01000000      2812478 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA291, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DANC00000000
VERSION     NZ_DANC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027250
            Sequence Read Archive: SRR5036797
            Assembly: GCF_002499755.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA291 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA291
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2812478)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2812478)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DANC00000000.1.
            The Methanoculleus sp. UBA291 whole genome shotgun (WGS) project
            has the project accession NZ_DANC00000000.  This version of the
            project (01) has the accession number NZ_DANC01000000, and consists
            of sequences DANC01000001-DANC01000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 28.73x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002499755.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:14:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,964
            CDSs (total)                      :: 2,907
            Genes (coding)                    :: 2,846
            CDSs (with protein)               :: 2,846
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 7 of 61
            Pseudo Genes (incomplete)         :: 53 of 61
            Pseudo Genes (internal stop)      :: 4 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2812478
                     /organism="Methanoculleus sp. UBA291"
                     /mol_type="genomic DNA"
                     /isolate="UBA291"
                     /isolation_source="mud"
                     /db_xref="taxon:1915495"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691273"
WGS         DANC01000001-DANC01000063
WGS_SCAFLD  NZ_DANC01000001-NZ_DANC01000063
//
LOCUS       NZ_DAFZ01000000      2389425 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA208, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAFZ00000000
VERSION     NZ_DAFZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027575
            Sequence Read Archive: SRR5036745
            Assembly: GCF_002498065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA208 (marine sediment metagenome)
  ORGANISM  Methanoculleus sp. UBA208
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2389425)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2389425)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAFZ00000000.1.
            The Methanoculleus sp. UBA208 whole genome shotgun (WGS) project
            has the project accession NZ_DAFZ00000000.  This version of the
            project (01) has the accession number NZ_DAFZ01000000, and consists
            of sequences DAFZ01000001-DAFZ01000121.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 21.56x
            Sequencing Technology :: Illumina HiSeq 1000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002498065.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:15:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,555
            CDSs (total)                      :: 2,505
            Genes (coding)                    :: 2,447
            CDSs (with protein)               :: 2,447
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 3 of 58
            Pseudo Genes (incomplete)         :: 53 of 58
            Pseudo Genes (internal stop)      :: 2 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389425
                     /organism="Methanoculleus sp. UBA208"
                     /mol_type="genomic DNA"
                     /isolate="UBA208"
                     /isolation_source="sediment"
                     /db_xref="taxon:1915494"
                     /environmental_sample
                     /geo_loc_name="Arctic Ocean: Arctic deep sea, Hakon Mosby
                     Mud Volcano"
                     /metagenome_source="marine sediment metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX993394"
WGS         DAFZ01000001-DAFZ01000121
WGS_SCAFLD  NZ_DAFZ01000001-NZ_DAFZ01000121
//
LOCUS       NZ_DAUJ01000000      2636515 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA331, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAUJ00000000
VERSION     NZ_DAUJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027491
            Sequence Read Archive: SRR5036896
            Assembly: GCF_002508765.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA331 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA331
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2636515)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2636515)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAUJ00000000.1.
            The Methanoculleus sp. UBA331 whole genome shotgun (WGS) project
            has the project accession NZ_DAUJ00000000.  This version of the
            project (01) has the accession number NZ_DAUJ01000000, and consists
            of sequences DAUJ01000001-DAUJ01000090.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 231.34x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508765.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:19:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,848
            CDSs (total)                      :: 2,794
            Genes (coding)                    :: 2,707
            CDSs (with protein)               :: 2,707
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 7 of 87
            Pseudo Genes (incomplete)         :: 79 of 87
            Pseudo Genes (internal stop)      :: 3 of 87
            Pseudo Genes (multiple problems)  :: 2 of 87
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2636515
                     /organism="Methanoculleus sp. UBA331"
                     /mol_type="genomic DNA"
                     /isolate="UBA331"
                     /isolation_source="mud"
                     /db_xref="taxon:1915502"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691274"
WGS         DAUJ01000001-DAUJ01000090
WGS_SCAFLD  NZ_DAUJ01000001-NZ_DAUJ01000090
//
LOCUS       NZ_DAFF01000000      2592690 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA312, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAFF00000000
VERSION     NZ_DAFF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027162
            Sequence Read Archive: SRR5036685
            Assembly: GCF_002508775.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA312 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA312
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2592690)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2592690)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAFF00000000.1.
            The Methanoculleus sp. UBA312 whole genome shotgun (WGS) project
            has the project accession NZ_DAFF00000000.  This version of the
            project (01) has the accession number NZ_DAFF01000000, and consists
            of sequences DAFF01000001-DAFF01000113.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 60.28x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508775.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:16:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,867
            CDSs (total)                      :: 2,818
            Genes (coding)                    :: 2,715
            CDSs (with protein)               :: 2,715
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 5 of 103
            Pseudo Genes (incomplete)         :: 97 of 103
            Pseudo Genes (internal stop)      :: 2 of 103
            Pseudo Genes (multiple problems)  :: 1 of 103
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2592690
                     /organism="Methanoculleus sp. UBA312"
                     /mol_type="genomic DNA"
                     /isolate="UBA312"
                     /isolation_source="mud"
                     /db_xref="taxon:1915499"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691277"
WGS         DAFF01000001-DAFF01000113
WGS_SCAFLD  NZ_DAFF01000001-NZ_DAFF01000113
//
LOCUS       NZ_DAKC01000000      2543712 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanosaeta sp. UBA356, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAKC00000000
VERSION     NZ_DAKC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027240
            Sequence Read Archive: SRR5036994
            Assembly: GCF_002496465.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosaeta sp. UBA356 (fermentation metagenome)
  ORGANISM  Methanosaeta sp. UBA356
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2543712)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2543712)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAKC00000000.1.
            The Methanosaeta sp. UBA356 whole genome shotgun (WGS) project has
            the project accession NZ_DAKC00000000.  This version of the project
            (01) has the accession number NZ_DAKC01000000, and consists of
            sequences DAKC01000001-DAKC01000142.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 108.40x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002496465.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:33:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,715
            CDSs (total)                      :: 2,671
            Genes (coding)                    :: 2,604
            CDSs (with protein)               :: 2,604
            Genes (RNA)                       :: 44
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 7 of 67
            Pseudo Genes (incomplete)         :: 62 of 67
            Pseudo Genes (internal stop)      :: 1 of 67
            Pseudo Genes (multiple problems)  :: 3 of 67
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543712
                     /organism="Methanosaeta sp. UBA356"
                     /mol_type="genomic DNA"
                     /isolate="UBA356"
                     /isolation_source="mud"
                     /db_xref="taxon:1915559"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691265"
WGS         DAKC01000001-DAKC01000142
WGS_SCAFLD  NZ_DAKC01000001-NZ_DAKC01000142
//
LOCUS       NZ_DAIK01000000      2403919 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanosaeta sp. UBA458, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAIK00000000
VERSION     NZ_DAIK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027335
            Sequence Read Archive: SRR5037000
            Assembly: GCF_002496085.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosaeta sp. UBA458 (bioreactor metagenome)
  ORGANISM  Methanosaeta sp. UBA458
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2403919)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2403919)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIK00000000.1.
            The Methanosaeta sp. UBA458 whole genome shotgun (WGS) project has
            the project accession NZ_DAIK00000000.  This version of the project
            (01) has the accession number NZ_DAIK01000000, and consists of
            sequences DAIK01000001-DAIK01000173.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 22.68x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002496085.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:40:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,580
            CDSs (total)                      :: 2,533
            Genes (coding)                    :: 2,447
            CDSs (with protein)               :: 2,447
            Genes (RNA)                       :: 47
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 12 of 86
            Pseudo Genes (incomplete)         :: 78 of 86
            Pseudo Genes (internal stop)      :: 4 of 86
            Pseudo Genes (multiple problems)  :: 6 of 86
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403919
                     /organism="Methanosaeta sp. UBA458"
                     /mol_type="genomic DNA"
                     /isolate="UBA458"
                     /isolation_source="bioreactor"
                     /db_xref="taxon:1915561"
                     /environmental_sample
                     /metagenome_source="bioreactor metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX392467"
WGS         DAIK01000001-DAIK01000173
WGS_SCAFLD  NZ_DAIK01000001-NZ_DAIK01000173
//
LOCUS       NZ_DASA01000000      2596710 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA334, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DASA00000000
VERSION     NZ_DASA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027486
            Sequence Read Archive: SRR5037084
            Assembly: GCF_002508745.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA334 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA334
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2596710)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2596710)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DASA00000000.1.
            The Methanoculleus sp. UBA334 whole genome shotgun (WGS) project
            has the project accession NZ_DASA00000000.  This version of the
            project (01) has the accession number NZ_DASA01000000, and consists
            of sequences DASA01000001-DASA01000073.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1651.01x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508745.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:49:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,807
            CDSs (total)                      :: 2,753
            Genes (coding)                    :: 2,644
            CDSs (with protein)               :: 2,644
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 7 of 109
            Pseudo Genes (incomplete)         :: 103 of 109
            Pseudo Genes (internal stop)      :: 1 of 109
            Pseudo Genes (multiple problems)  :: 2 of 109
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2596710
                     /organism="Methanoculleus sp. UBA334"
                     /mol_type="genomic DNA"
                     /isolate="UBA334"
                     /isolation_source="mud"
                     /db_xref="taxon:1915503"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691279"
WGS         DASA01000001-DASA01000073
WGS_SCAFLD  NZ_DASA01000001-NZ_DASA01000073
//
LOCUS       NZ_DATMYY010000000   2575201 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanospirillum sp. isolate SMAG_U13160, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DATMYY000000000
VERSION     NZ_DATMYY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37943755
            Sequence Read Archive: SRR7629282
            Assembly: GCF_035560735.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanospirillum sp. (soil metagenome)
  ORGANISM  Methanospirillum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanospirillaceae;
            Methanospirillum.
REFERENCE   1  (bases 1 to 2575201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. doi:
            10.1038/s41467-023-44072-7. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2575201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DATMYY000000000.1.
            The Methanospirillum sp. whole genome shotgun (WGS) project has the
            project accession NZ_DATMYY000000000.  This version of the project
            (01) has the accession number NZ_DATMYY010000000, and consists of
            sequences DATMYY010000001-DATMYY010000417.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035560735.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 12:32:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,514
            CDSs (total)                      :: 2,485
            Genes (coding)                    :: 2,456
            CDSs (with protein)               :: 2,456
            Genes (RNA)                       :: 29
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 0 of 29
            Pseudo Genes (incomplete)         :: 28 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575201
                     /organism="Methanospirillum sp."
                     /mol_type="genomic DNA"
                     /isolate="SMAG_U13160"
                     /isolation_source="soil"
                     /db_xref="taxon:45200"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="46.61 N 94.16 W"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         DATMYY010000001-DATMYY010000417
WGS_SCAFLD  NZ_DATMYY010000001-NZ_DATMYY010000417
//
LOCUS       NZ_DATJPM010000000   2596109 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanocella sp. isolate SMAG_U14913, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DATJPM000000000
VERSION     NZ_DATJPM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37942267
            Sequence Read Archive: SRR8879134
            Assembly: GCF_035506375.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanocella sp. (soil metagenome)
  ORGANISM  Methanocella sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.
REFERENCE   1  (bases 1 to 2596109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. doi:
            10.1038/s41467-023-44072-7. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2596109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DATJPM000000000.1.
            The Methanocella sp. whole genome shotgun (WGS) project has the
            project accession NZ_DATJPM000000000.  This version of the project
            (01) has the accession number NZ_DATJPM010000000, and consists of
            sequences DATJPM010000001-DATJPM010000099.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035506375.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 12:39:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,757
            CDSs (total)                      :: 2,708
            Genes (coding)                    :: 2,681
            CDSs (with protein)               :: 2,681
            Genes (RNA)                       :: 49
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 3 of 27
            Pseudo Genes (incomplete)         :: 25 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2596109
                     /organism="Methanocella sp."
                     /mol_type="genomic DNA"
                     /isolate="SMAG_U14913"
                     /isolation_source="soil"
                     /db_xref="taxon:2052833"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="26.5008 N 80.2398 W"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         DATJPM010000001-DATJPM010000099
WGS_SCAFLD  NZ_DATJPM010000001-NZ_DATJPM010000099
//
LOCUS       NZ_JBDOIA010000000   1833271 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate TC202112_Ori_Bins023, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBDOIA000000000
VERSION     NZ_JBDOIA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40965363
            Sequence Read Archive: SRR28530377
            Assembly: GCF_041082135.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (hot springs metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 1833271)
  AUTHORS   Yu,T., Fu,L., Wang,Y., Dong,Y., Chen,Y., Wegener,G., Cheng,L. and
            Wang,F.
  TITLE     Thermophilic Hadarchaeota grow on long-chain alkanes in syntrophy
            with methanogens
  JOURNAL   Nat Commun 15 (1), 6560 (2024)
   PUBMED   39095478
  REMARK    Erratum:[Nat Commun. 2025 Jan 6;16(1):412. doi:
            10.1038/s41467-024-55708-7. PMID: 39762228]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1833271)
  AUTHORS   Yu,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2024) State Key Laboratory of Ocean Engineering,
            Shanghai Jiao Tong University, Shanghai, 200240, China, Shanghai
            Jiao Tong University, Dongchuan Road, Shanghai 201100, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDOIA000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBDOIA000000000.  This version of the project
            (01) has the accession number NZ_JBDOIA010000000, and consists of
            sequences JBDOIA010000001-JBDOIA010000316.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 87.5x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041082135.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 15:13:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,009
            CDSs (total)                      :: 1,958
            Genes (coding)                    :: 1,870
            CDSs (with protein)               :: 1,870
            Genes (RNA)                       :: 51
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 0 of 88
            Pseudo Genes (incomplete)         :: 88 of 88
            Pseudo Genes (internal stop)      :: 1 of 88
            Pseudo Genes (multiple problems)  :: 1 of 88
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833271
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="TC202112_Ori_Bins023"
                     /isolation_source="sediment"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="China: hot spring in Tengchong"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBDOIA010000001-JBDOIA010000316
WGS_SCAFLD  NZ_JBDOIA010000001-NZ_JBDOIA010000316
//
LOCUS       NZ_JAQCNO010000000   2276379 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Natronomonas sp. isolate LUM.42, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQCNO000000000
VERSION     NZ_JAQCNO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32192790
            Assembly: GCF_028274965.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronomonas sp. (hypersaline lake metagenome)
  ORGANISM  Natronomonas sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2276379)
  AUTHORS   Kheiri,R., Mehrshad,M., Pourbabaee,A.A., Ventosa,A. and
            Amoozegar,M.A.
  TITLE     Hypersaline Lake Urmia: a potential hotspot for microbial genomic
            variation
  JOURNAL   Sci Rep 13 (1), 374 (2023)
   PUBMED   36611086
  REMARK    Erratum:[Sci Rep. 2023 Feb 10;13(1):2424. doi:
            10.1038/s41598-023-29691-w. PMID: 36765130]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276379)
  AUTHORS   Kheiri,R., Mehrshad,M., Pourbabaee,A.A., Ventosa,A. and
            Amoozegar,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2022) Microbiology, Tehran University, Enqelab,
            Tehran, Tehran 3136648673, Iran
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQCNO000000000.1.
            The Natronomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAQCNO000000000.  This version of the project
            (01) has the accession number NZ_JAQCNO010000000, and consists of
            sequences JAQCNO010000001-JAQCNO010000073.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-MAY-2021
            Assembly Method        :: MetaBAT v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028274965.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 11:46:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,432
            CDSs (total)                      :: 2,386
            Genes (coding)                    :: 2,349
            CDSs (with protein)               :: 2,349
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 3 of 37
            Pseudo Genes (incomplete)         :: 36 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 3 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276379
                     /organism="Natronomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="LUM.42"
                     /isolation_source="hyper saline lake"
                     /db_xref="taxon:2184060"
                     /environmental_sample
                     /geo_loc_name="Iran: West Azarbayejan, Lake Urmia"
                     /lat_lon="37.78243195 N 45.30924322 E"
                     /collection_date="2020-10-01"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JAQCNO010000001-JAQCNO010000073
WGS_SCAFLD  NZ_JAQCNO010000001-NZ_JAQCNO010000073
//
LOCUS       NZ_DASWIL010000000   1540364 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Nitrososphaera sp. isolate SMAG_U2868, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DASWIL000000000
VERSION     NZ_DASWIL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37960514
            Sequence Read Archive: SRR10376087
            Assembly: GCF_036397675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Nitrososphaera sp. (soil metagenome)
  ORGANISM  Nitrososphaera sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Nitrososphaera.
REFERENCE   1  (bases 1 to 1540364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. doi:
            10.1038/s41467-023-44072-7. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DASWIL000000000.1.
            The Nitrososphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_DASWIL000000000.  This version of the project
            (01) has the accession number NZ_DASWIL010000000, and consists of
            sequences DASWIL010000001-DASWIL010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036397675.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 13:39:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,925
            CDSs (total)                      :: 1,878
            Genes (coding)                    :: 1,866
            CDSs (with protein)               :: 1,866
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 42
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 11 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540364
                     /organism="Nitrososphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="SMAG_U2868"
                     /isolation_source="soil"
                     /db_xref="taxon:1971748"
                     /environmental_sample
                     /geo_loc_name="USA: Oregon"
                     /lat_lon="42.99 N 123.63 W"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         DASWIL010000001-DASWIL010000042
WGS_SCAFLD  NZ_DASWIL010000001-NZ_DASWIL010000042
//
LOCUS       NZ_DAYL01000000      2791596 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA374, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAYL00000000
VERSION     NZ_DAYL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027555
            Sequence Read Archive: SRR5036981
            Assembly: GCF_002508705.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA374 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA374
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2791596)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2791596)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAYL00000000.1.
            The Methanoculleus sp. UBA374 whole genome shotgun (WGS) project
            has the project accession NZ_DAYL00000000.  This version of the
            project (01) has the accession number NZ_DAYL01000000, and consists
            of sequences DAYL01000001-DAYL01000036.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 201.52x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508705.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:16:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,907
            CDSs (total)                      :: 2,847
            Genes (coding)                    :: 2,787
            CDSs (with protein)               :: 2,787
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 8 of 60
            Pseudo Genes (incomplete)         :: 52 of 60
            Pseudo Genes (internal stop)      :: 3 of 60
            Pseudo Genes (multiple problems)  :: 3 of 60
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791596
                     /organism="Methanoculleus sp. UBA374"
                     /mol_type="genomic DNA"
                     /isolate="UBA374"
                     /isolation_source="mud"
                     /db_xref="taxon:1915505"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691267"
WGS         DAYL01000001-DAYL01000036
WGS_SCAFLD  NZ_DAYL01000001-NZ_DAYL01000036
//
LOCUS       NZ_DATKKA010000000   2136426 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate SMAG_U14645, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DATKKA000000000
VERSION     NZ_DATKKA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37938153
            Sequence Read Archive: SRR8879130
            Assembly: GCF_035543475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2136426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. doi:
            10.1038/s41467-023-44072-7. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2136426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DATKKA000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_DATKKA000000000.  This version of the project
            (01) has the accession number NZ_DATKKA010000000, and consists of
            sequences DATKKA010000001-DATKKA010000034.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035543475.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 12:24:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,191
            CDSs (total)                      :: 2,145
            Genes (coding)                    :: 2,127
            CDSs (with protein)               :: 2,127
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 2 of 18
            Pseudo Genes (incomplete)         :: 16 of 18
            Pseudo Genes (internal stop)      :: 0 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136426
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SMAG_U14645"
                     /isolation_source="soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="26.5008 N 80.2398 W"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         DATKKA010000001-DATKKA010000034
WGS_SCAFLD  NZ_DATKKA010000001-NZ_DATKKA010000034
//
LOCUS       NZ_DAVG01000000      3813744 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanosarcina sp. UBA5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAVG00000000
VERSION     NZ_DAVG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027134
            Sequence Read Archive: SRR5036870
            Assembly: GCF_002505485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosarcina sp. UBA5 (biofilm metagenome)
  ORGANISM  Methanosarcina sp. UBA5
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3813744)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 3813744)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAVG00000000.1.
            The Methanosarcina sp. UBA5 whole genome shotgun (WGS) project has
            the project accession NZ_DAVG00000000.  This version of the project
            (01) has the accession number NZ_DAVG01000000, and consists of
            sequences DAVG01000001-DAVG01000137.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 25.27x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002505485.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:20:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,423
            CDSs (total)                      :: 3,361
            Genes (coding)                    :: 3,254
            CDSs (with protein)               :: 3,254
            Genes (RNA)                       :: 62
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 49 of 107
            Pseudo Genes (incomplete)         :: 68 of 107
            Pseudo Genes (internal stop)      :: 27 of 107
            Pseudo Genes (multiple problems)  :: 30 of 107
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813744
                     /organism="Methanosarcina sp. UBA5"
                     /mol_type="genomic DNA"
                     /isolate="UBA5"
                     /isolation_source="AM-anode biofilm"
                     /db_xref="taxon:1915593"
                     /environmental_sample
                     /metagenome_source="biofilm metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     DRX011531"
WGS         DAVG01000001-DAVG01000137
WGS_SCAFLD  NZ_DAVG01000001-NZ_DAVG01000137
//
LOCUS       NZ_DAQR01000000      2296509 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA413, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAQR00000000
VERSION     NZ_DAQR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027371
            Sequence Read Archive: SRR5037176
            Assembly: GCF_002502935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA413 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA413
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2296509)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2296509)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAQR00000000.1.
            The Methanoculleus sp. UBA413 whole genome shotgun (WGS) project
            has the project accession NZ_DAQR00000000.  This version of the
            project (01) has the accession number NZ_DAQR01000000, and consists
            of sequences DAQR01000001-DAQR01000141.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 26.70x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002502935.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:17:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,465
            CDSs (total)                      :: 2,422
            Genes (coding)                    :: 2,322
            CDSs (with protein)               :: 2,322
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 3 of 100
            Pseudo Genes (incomplete)         :: 97 of 100
            Pseudo Genes (internal stop)      :: 1 of 100
            Pseudo Genes (multiple problems)  :: 1 of 100
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296509
                     /organism="Methanoculleus sp. UBA413"
                     /mol_type="genomic DNA"
                     /isolate="UBA413"
                     /isolation_source="mud"
                     /db_xref="taxon:1915509"
                     /environmental_sample
                     /geo_loc_name="China: Mianyang"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691286"
WGS         DAQR01000001-DAQR01000141
WGS_SCAFLD  NZ_DAQR01000001-NZ_DAQR01000141
//
LOCUS       NZ_DAGK01000000      3681830 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanosarcina sp. UBA411, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAGK00000000
VERSION     NZ_DAGK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027374
            Sequence Read Archive: SRR5037212
            Assembly: GCF_002495725.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosarcina sp. UBA411 (fermentation metagenome)
  ORGANISM  Methanosarcina sp. UBA411
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3681830)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 3681830)
  AUTHORS   Parks,D.H., Hugenholtz,P. and Tyson,G.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2016) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAGK00000000.1.
            The Methanosarcina sp. UBA411 whole genome shotgun (WGS) project
            has the project accession NZ_DAGK00000000.  This version of the
            project (01) has the accession number NZ_DAGK01000000, and consists
            of sequences DAGK01000001-DAGK01000035.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC de novo assembler v. 4.4.1
            Genome Coverage       :: 93.94x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002495725.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:16:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,206
            CDSs (total)                      :: 3,149
            Genes (coding)                    :: 3,078
            CDSs (with protein)               :: 3,078
            Genes (RNA)                       :: 57
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 15 of 71
            Pseudo Genes (incomplete)         :: 54 of 71
            Pseudo Genes (internal stop)      :: 16 of 71
            Pseudo Genes (multiple problems)  :: 13 of 71
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681830
                     /organism="Methanosarcina sp. UBA411"
                     /mol_type="genomic DNA"
                     /isolate="UBA411"
                     /isolation_source="mud"
                     /db_xref="taxon:1915589"
                     /environmental_sample
                     /geo_loc_name="China: Mianyang"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691286"
WGS         DAGK01000001-DAGK01000035
WGS_SCAFLD  NZ_DAGK01000001-NZ_DAGK01000035
//
LOCUS       NZ_DAFM01000000      2624373 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA377, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DAFM00000000
VERSION     NZ_DAFM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027554
            Sequence Read Archive: SRR5036979
            Assembly: GCF_002509565.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA377 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA377
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2624373)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2624373)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAFM00000000.1.
            The Methanoculleus sp. UBA377 whole genome shotgun (WGS) project
            has the project accession NZ_DAFM00000000.  This version of the
            project (01) has the accession number NZ_DAFM01000000, and consists
            of sequences DAFM01000001-DAFM01000084.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 154.23x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002509565.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:18:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,821
            CDSs (total)                      :: 2,768
            Genes (coding)                    :: 2,689
            CDSs (with protein)               :: 2,689
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 6 of 79
            Pseudo Genes (incomplete)         :: 73 of 79
            Pseudo Genes (internal stop)      :: 2 of 79
            Pseudo Genes (multiple problems)  :: 2 of 79
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624373
                     /organism="Methanoculleus sp. UBA377"
                     /mol_type="genomic DNA"
                     /isolate="UBA377"
                     /isolation_source="mud"
                     /db_xref="taxon:1915506"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691263"
WGS         DAFM01000001-DAFM01000084
WGS_SCAFLD  NZ_DAFM01000001-NZ_DAFM01000084
//
LOCUS       NZ_DATG01000000      2554218 bp    DNA     linear   ENV 08-APR-2025
DEFINITION  MAG: Methanoculleus sp. UBA300, whole genome shotgun sequencing
            project.
ACCESSION   NZ_DATG00000000
VERSION     NZ_DATG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06027362
            Sequence Read Archive: SRR5036887
            Assembly: GCF_002508805.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. UBA300 (fermentation metagenome)
  ORGANISM  Methanoculleus sp. UBA300
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2554218)
  AUTHORS   Parks,D.H., Rinke,C., Chuvochina,M., Chaumeil,P.A., Woodcroft,B.J.,
            Evans,P.N., Hugenholtz,P. and Tyson,G.W.
  TITLE     Recovery of nearly 8,000 metagenome-assembled genomes substantially
            expands the tree of life
  JOURNAL   Nat Microbiol 2 (11), 1533-1542 (2017)
   PUBMED   28894102
  REMARK    Erratum:[Nat Microbiol. 2018 Feb;3(2):253. doi:
            10.1038/s41564-017-0083-5. PMID: 29234139]
REFERENCE   2  (bases 1 to 2554218)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2017) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DATG00000000.1.
            The Methanoculleus sp. UBA300 whole genome shotgun (WGS) project
            has the project accession NZ_DATG00000000.  This version of the
            project (01) has the accession number NZ_DATG01000000, and consists
            of sequences DATG01000001-DATG01000081.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 61.24x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002508805.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 09:46:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,764
            CDSs (total)                      :: 2,709
            Genes (coding)                    :: 2,611
            CDSs (with protein)               :: 2,611
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 10 of 98
            Pseudo Genes (incomplete)         :: 88 of 98
            Pseudo Genes (internal stop)      :: 4 of 98
            Pseudo Genes (multiple problems)  :: 4 of 98
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554218
                     /organism="Methanoculleus sp. UBA300"
                     /mol_type="genomic DNA"
                     /isolate="UBA300"
                     /isolation_source="mud"
                     /db_xref="taxon:1915496"
                     /environmental_sample
                     /geo_loc_name="China: Luzhou"
                     /metagenome_source="fermentation metagenome"
                     /metagenomic
                     /note="Genome binned from sequencing reads available in
                     SRX691271"
WGS         DATG01000001-DATG01000081
WGS_SCAFLD  NZ_DATG01000001-NZ_DATG01000081
//
LOCUS       NZ_JAXUHJ010000000   1662603 bp    DNA     linear   BCT 09-APR-2025
DEFINITION  Methanothermobacter wolfeii strain BSEL-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXUHJ000000000
VERSION     NZ_JAXUHJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38790893
            Assembly: GCF_037786815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanothermobacter wolfeii
  ORGANISM  Methanothermobacter wolfeii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1662603)
  AUTHORS   Ale Enriquez,F. and Ahring,B.K.
  TITLE     Phenotypic and Genomic Characterization of Methanothermobacter
            wolfeii Strain BSEL, a CO2-Capturing Archaeon with Minimal Nutrient
            Requirements
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1662603)
  AUTHORS   Ale Enriquez,F. and Ahring,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2023) Bioproducts, Sciences, and Engineering
            Laboratory, Washington State University, 2710 Crimson Way,
            Richland, WA 99354-1655, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXUHJ000000000.1.
            The Methanothermobacter wolfeii whole genome shotgun (WGS) project
            has the project accession NZ_JAXUHJ000000000.  This version of the
            project (01) has the accession number NZ_JAXUHJ010000000, and
            consists of sequences JAXUHJ010000001-JAXUHJ010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Bioproducts, Sciences, and
            Engineering Laboratory (BSEL). Crimson Way, Richland, WA 99354,
            United States.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-SEP-2023
            Assembly Method        :: SKESA v. 2.4.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 95.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037786815.1-RS_2025_04_07
            Annotation Date                   :: 04/07/2025 18:21:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,837
            CDSs (total)                      :: 1,792
            Genes (coding)                    :: 1,760
            CDSs (with protein)               :: 1,760
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 17 of 32
            Pseudo Genes (incomplete)         :: 16 of 32
            Pseudo Genes (internal stop)      :: 1 of 32
            Pseudo Genes (multiple problems)  :: 2 of 32
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662603
                     /organism="Methanothermobacter wolfeii"
                     /mol_type="genomic DNA"
                     /strain="BSEL-1"
                     /isolation_source="Anaerobic digester"
                     /db_xref="taxon:145261"
                     /geo_loc_name="USA: Richland"
                     /collection_date="2021-02-15"
                     /collected_by="Fuad Ale Enriquez, Birgitte K. Ahring"
WGS         JAXUHJ010000001-JAXUHJ010000014
WGS_SCAFLD  NZ_JAXUHJ010000001-NZ_JAXUHJ010000014
//
LOCUS       NZ_JAFKAA010000000   3572369 bp    DNA     linear   BCT 15-APR-2025
DEFINITION  Haloarcula hispanica strain 1.8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAFKAA000000000
VERSION     NZ_JAFKAA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18082610
            Assembly: GCF_022807515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula hispanica
  ORGANISM  Haloarcula hispanica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3572369)
  AUTHORS   Najjari,A.
  TITLE     Complete genome sequence of Halostagnicola sp 1.74 provides
            insights into metabolic potential
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3572369)
  AUTHORS   Najjari,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2021) Biology, LMBA, University of El Manar,
            Tunis, Tunis 2092, Tunisia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFKAA000000000.1.
            The Haloarcula hispanica whole genome shotgun (WGS) project has the
            project accession NZ_JAFKAA000000000.  This version of the project
            (01) has the accession number NZ_JAFKAA010000000, and consists of
            sequences JAFKAA010000001-JAFKAA010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.0x
            Sequencing Technology  :: Miseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807515.1-RS_2025_04_15
            Annotation Date                   :: 04/15/2025 11:34:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,817
            CDSs (total)                      :: 3,766
            Genes (coding)                    :: 3,570
            CDSs (with protein)               :: 3,570
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 196
            CDSs (without protein)            :: 196
            Pseudo Genes (ambiguous residues) :: 0 of 196
            Pseudo Genes (frameshifted)       :: 43 of 196
            Pseudo Genes (incomplete)         :: 159 of 196
            Pseudo Genes (internal stop)      :: 8 of 196
            Pseudo Genes (multiple problems)  :: 14 of 196
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572369
                     /organism="Haloarcula hispanica"
                     /mol_type="genomic DNA"
                     /strain="1.8"
                     /isolation_source="water"
                     /db_xref="taxon:51589"
                     /geo_loc_name="Tunisia: Douz, Ksar Ghilane"
                     /collection_date="2012"
WGS         JAFKAA010000001-JAFKAA010000007
WGS_SCAFLD  NZ_JAFKAA010000001-NZ_JAFKAA010000007
//
LOCUS       NZ_JAGDWL010000000   1267118 bp    DNA     linear   ENV 16-APR-2025
DEFINITION  MAG: Desulfurococcus amylolyticus isolate KUA_Bin10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAGDWL000000000
VERSION     NZ_JAGDWL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17914465
            Assembly: GCF_023256035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Desulfurococcus amylolyticus (hot springs metagenome)
  ORGANISM  Desulfurococcus amylolyticus
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1267118)
  AUTHORS   Wemheuer,B.
  TITLE     Collection of 70 Metagenome-assembled genomes reconstructed from
            two hot spring metagenomes derived from Kamchatka, Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1267118)
  AUTHORS   Wemheuer,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2021) Institute of Microbiology and Genetics (AG
            Daniel), University of Goettingen, Grisebachstr. 8, Goettingen
            37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGDWL000000000.1.
            The Desulfurococcus amylolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAGDWL000000000.  This version of the
            project (01) has the accession number NZ_JAGDWL010000000, and
            consists of sequences JAGDWL010000001-JAGDWL010000062.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24.42008x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023256035.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 17:22:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,389
            CDSs (total)                      :: 1,348
            Genes (coding)                    :: 1,333
            CDSs (with protein)               :: 1,333
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 2 of 15
            Pseudo Genes (incomplete)         :: 13 of 15
            Pseudo Genes (internal stop)      :: 0 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267118
                     /organism="Desulfurococcus amylolyticus"
                     /mol_type="genomic DNA"
                     /isolate="KUA_Bin10"
                     /isolation_source="thermophilic sediment from neutral hot
                     spring"
                     /db_xref="taxon:94694"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, Uzon Caldera"
                     /lat_lon="54.5 N 159.97 E"
                     /collection_date="2001-07-27"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAGDWL010000001-JAGDWL010000062
WGS_SCAFLD  NZ_JAGDWL010000001-NZ_JAGDWL010000062
//
LOCUS       NZ_DAIEUE010000000   1452192 bp    DNA     linear   ENV 17-APR-2025
DEFINITION  MAG: Ferroplasma acidiphilum isolate clean2916, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIEUE000000000
VERSION     NZ_DAIEUE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28407123
            Sequence Read Archive: SRR13213329
            Assembly: GCF_027375655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ferroplasma acidiphilum (mine drainage metagenome)
  ORGANISM  Ferroplasma acidiphilum
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma.
REFERENCE   1  (bases 1 to 1452192)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1452192)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIEUE000000000.1.
            The Ferroplasma acidiphilum whole genome shotgun (WGS) project has
            the project accession NZ_DAIEUE000000000.  This version of the
            project (01) has the accession number NZ_DAIEUE010000000, and
            consists of sequences DAIEUE010000001-DAIEUE010000078.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027375655.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 19:20:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,562
            CDSs (total)                      :: 1,513
            Genes (coding)                    :: 1,491
            CDSs (with protein)               :: 1,491
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 1 of 22
            Pseudo Genes (incomplete)         :: 22 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452192
                     /organism="Ferroplasma acidiphilum"
                     /mol_type="genomic DNA"
                     /isolate="clean2916"
                     /isolation_source="sediment"
                     /db_xref="taxon:74969"
                     /environmental_sample
                     /geo_loc_name="China: Guangdong, Yunfu"
                     /lat_lon="22.96400 N 112.01499 E"
                     /collection_date="2016-12-08"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAIEUE010000001-DAIEUE010000078
WGS_SCAFLD  NZ_DAIEUE010000001-NZ_DAIEUE010000078
//
LOCUS       NZ_DAIEUD010000000   1638265 bp    DNA     linear   ENV 17-APR-2025
DEFINITION  MAG: Ferroplasma acidiphilum isolate clean2915, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIEUD000000000
VERSION     NZ_DAIEUD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28407122
            Sequence Read Archive: SRR13206894
            Assembly: GCF_027375625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ferroplasma acidiphilum (mine drainage metagenome)
  ORGANISM  Ferroplasma acidiphilum
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma.
REFERENCE   1  (bases 1 to 1638265)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638265)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIEUD000000000.1.
            The Ferroplasma acidiphilum whole genome shotgun (WGS) project has
            the project accession NZ_DAIEUD000000000.  This version of the
            project (01) has the accession number NZ_DAIEUD010000000, and
            consists of sequences DAIEUD010000001-DAIEUD010000096.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027375625.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 19:18:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,711
            CDSs (total)                      :: 1,663
            Genes (coding)                    :: 1,633
            CDSs (with protein)               :: 1,633
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 3 of 30
            Pseudo Genes (incomplete)         :: 30 of 30
            Pseudo Genes (internal stop)      :: 3 of 30
            Pseudo Genes (multiple problems)  :: 3 of 30
            CRISPR Arrays                     :: 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638265
                     /organism="Ferroplasma acidiphilum"
                     /mol_type="genomic DNA"
                     /isolate="clean2915"
                     /isolation_source="sediment"
                     /db_xref="taxon:74969"
                     /environmental_sample
                     /geo_loc_name="China: Guangdong, Yunfu"
                     /lat_lon="22.96413 N 112.01483 E"
                     /collection_date="2016-12-08"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAIEUD010000001-DAIEUD010000096
WGS_SCAFLD  NZ_DAIEUD010000001-NZ_DAIEUD010000096
//
LOCUS       NZ_DAIDCF010000000   1560642 bp    DNA     linear   ENV 17-APR-2025
DEFINITION  MAG: Ferroplasma acidiphilum isolate clean2917, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIDCF000000000
VERSION     NZ_DAIDCF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28081236
            Sequence Read Archive: SRR9320198
            Assembly: GCF_027309725.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ferroplasma acidiphilum (mine drainage metagenome)
  ORGANISM  Ferroplasma acidiphilum
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma.
REFERENCE   1  (bases 1 to 1560642)
  AUTHORS   Wang,L., Liu,W., Liang,J., Zhao,L., Li,Q., Zhou,C., Cen,H., Weng,Q.
            and Zhang,G.
  TITLE     Mining of novel secondary metabolite biosynthetic gene clusters
            from acid mine drainage
  JOURNAL   Sci Data 9 (1), 760 (2022)
   PUBMED   36494363
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560642)
  AUTHORS   Zhang,G., Liu,W. and Wang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2022) an eLibrary of Microbial Systematics and
            Genomics, 320 Yueyang Road, Shanghai 201203, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIDCF000000000.1.
            The Ferroplasma acidiphilum whole genome shotgun (WGS) project has
            the project accession NZ_DAIDCF000000000.  This version of the
            project (01) has the accession number NZ_DAIDCF010000000, and
            consists of sequences DAIDCF010000001-DAIDCF010000132.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. V1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027309725.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 19:20:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,682
            CDSs (total)                      :: 1,630
            Genes (coding)                    :: 1,588
            CDSs (with protein)               :: 1,588
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 4 of 42
            Pseudo Genes (incomplete)         :: 39 of 42
            Pseudo Genes (internal stop)      :: 1 of 42
            Pseudo Genes (multiple problems)  :: 1 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560642
                     /organism="Ferroplasma acidiphilum"
                     /mol_type="genomic DNA"
                     /isolate="clean2917"
                     /isolation_source="water"
                     /db_xref="taxon:74969"
                     /environmental_sample
                     /geo_loc_name="China: Guangdong, Guangzhou"
                     /lat_lon="23.09000 N 113.30000 E"
                     /collection_date="2015-11-30"
                     /metagenome_source="mine drainage metagenome"
                     /metagenomic
WGS         DAIDCF010000001-DAIDCF010000132
WGS_SCAFLD  NZ_DAIDCF010000001-NZ_DAIDCF010000132
//
LOCUS       NZ_JAJSOI010000000   3037489 bp    DNA     linear   BCT 17-APR-2025
DEFINITION  Halobacterium noricense strain NRS2HaP9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJSOI000000000
VERSION     NZ_JAJSOI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23457130
            Assembly: GCF_021963785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium noricense
  ORGANISM  Halobacterium noricense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 3037489)
  AUTHORS   Mukhtar,S., Mehnaz,S. and Malik,K.A.
  TITLE     Identification and characterization of haloarchaea from the
            rhizosphere of halophytes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3037489)
  AUTHORS   Mukhtar,S., Mehnaz,S. and Malik,K.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2021) School of Life Sciences, Forman Christian
            College, Ferozpur Road, Lahore, Punjab 54600, Pakistan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJSOI000000000.1.
            The Halobacterium noricense whole genome shotgun (WGS) project has
            the project accession NZ_JAJSOI000000000.  This version of the
            project (01) has the accession number NZ_JAJSOI010000000, and
            consists of sequences JAJSOI010000001-JAJSOI010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Salma Mukhtar, School of
            Biological Sciences, University of the Punjab, Lahore 54590,
            Pakistan.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2021
            Assembly Method        :: SPAdes v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021963785.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 13:46:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,308
            CDSs (total)                      :: 3,257
            Genes (coding)                    :: 3,182
            CDSs (with protein)               :: 3,182
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 29 of 75
            Pseudo Genes (incomplete)         :: 49 of 75
            Pseudo Genes (internal stop)      :: 9 of 75
            Pseudo Genes (multiple problems)  :: 11 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3037489
                     /organism="Halobacterium noricense"
                     /mol_type="genomic DNA"
                     /strain="NRS2HaP9"
                     /isolation_source="rhizosphere"
                     /host="Atriplex amnicola"
                     /db_xref="taxon:223182"
                     /geo_loc_name="Pakistan: Punjab"
                     /collection_date="2015-02-22"
WGS         JAJSOI010000001-JAJSOI010000009
WGS_SCAFLD  NZ_JAJSOI010000001-NZ_JAJSOI010000009
//
LOCUS       NZ_JACCQJ010000000   1701787 bp    DNA     linear   ENV 17-APR-2025
DEFINITION  MAG: Methanococcus maripaludis isolate MIC098Bin5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JACCQJ000000000
VERSION     NZ_JACCQJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15518723
            Assembly: GCF_015709365.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanococcus maripaludis (biofilm metagenome)
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1701787)
  AUTHORS   Lahme,S., Mand,J., Longwell,J., Smith,R. and Enning,D.
  TITLE     Severe corrosion of carbon steel in oil field produced water can be
            linked to methanogenic archaea containing a special type of NiFe
            hydrogenase
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1701787)
  AUTHORS   Lahme,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2020) Research and Technology Development,
            ExxonMobil Upstream Research Company, 22777 Springwoods Village
            Pkwy, Spring, TX 77389, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACCQJ000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JACCQJ000000000.  This version of the
            project (01) has the accession number NZ_JACCQJ010000000, and
            consists of sequences JACCQJ010000001-JACCQJ010000005.
            Annotation modified by submitter.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-APR-2020
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4000x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015709365.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 10:51:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,857
            CDSs (total)                      :: 1,818
            Genes (coding)                    :: 1,798
            CDSs (with protein)               :: 1,798
            Genes (RNA)                       :: 39
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 11 of 20
            Pseudo Genes (incomplete)         :: 8 of 20
            Pseudo Genes (internal stop)      :: 2 of 20
            Pseudo Genes (multiple problems)  :: 1 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1701787
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /isolate="MIC098Bin5"
                     /isolation_source="biofilm from carbon steel corrosion
                     coupon exposed to oil field production water"
                     /db_xref="taxon:39152"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="29.5997600 N 95.1805300 W"
                     /collection_date="2017-01-30"
                     /metagenome_source="biofilm metagenome"
                     /metagenomic
WGS         JACCQJ010000001-JACCQJ010000005
WGS_SCAFLD  NZ_JACCQJ010000001-NZ_JACCQJ010000005
//
LOCUS       NZ_JALEWY010000000   1615251 bp    DNA     linear   ENV 17-APR-2025
DEFINITION  MAG: Methanobrevibacter woesei isolate SUG411, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALEWY000000000
VERSION     NZ_JALEWY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26525635
            Assembly: GCF_022780185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter woesei (pig gut metagenome)
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1615251)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Metagenome-assembled genomes from swine fecal metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1615251)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2022) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALEWY000000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_JALEWY000000000.  This version of the
            project (01) has the accession number NZ_JALEWY010000000, and
            consists of sequences JALEWY010000001-JALEWY010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2021
            Assembly Method        :: MEGAHIT v. v. 1.29.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.8x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022780185.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 17:10:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,712
            CDSs (total)                      :: 1,673
            Genes (coding)                    :: 1,668
            CDSs (with protein)               :: 1,668
            Genes (RNA)                       :: 39
            rRNAs                             :: 2, 2 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 3 of 5
            Pseudo Genes (incomplete)         :: 3 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615251
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /isolate="SUG411"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:190976"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2019"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JALEWY010000001-JALEWY010000016
WGS_SCAFLD  NZ_JALEWY010000001-NZ_JALEWY010000016
//
LOCUS       NZ_JAPNVB010000000   2318063 bp    DNA     linear   ENV 17-APR-2025
DEFINITION  MAG: Metallosphaera prunae isolate CF.Pisc.bin.23, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAPNVB000000000
VERSION     NZ_JAPNVB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31719906
            Assembly: GCF_026627265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Metallosphaera prunae (hot springs metagenome)
  ORGANISM  Metallosphaera prunae
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2318063)
  AUTHORS   Ugwuanyi,I.R., Fogel,M.L., Bowden,R., Steele,A., De Natale,G.,
            Troise,C., Somma,R., Piochi,M., Mormone,A. and Glamoclija,M.
  TITLE     Comparative Metagenomics at Solfatara and Pisciarelli Hydrothermal
            Systems in Italy Reveal that Ecological Differences Across
            Substrates are not Ubiquitous
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2318063)
  AUTHORS   Ugwuanyi,I.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2022) Earth and Environmental Sciences, Rutgers
            University, 101 Warren Street, Newark, NJ 07102, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPNVB000000000.1.
            The Metallosphaera prunae whole genome shotgun (WGS) project has
            the project accession NZ_JAPNVB000000000.  This version of the
            project (01) has the accession number NZ_JAPNVB010000000, and
            consists of sequences JAPNVB010000001-JAPNVB010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 773x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026627265.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 18:59:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,589
            CDSs (total)                      :: 2,537
            Genes (coding)                    :: 2,499
            CDSs (with protein)               :: 2,499
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 7 of 38
            Pseudo Genes (incomplete)         :: 30 of 38
            Pseudo Genes (internal stop)      :: 7 of 38
            Pseudo Genes (multiple problems)  :: 6 of 38
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318063
                     /organism="Metallosphaera prunae"
                     /mol_type="genomic DNA"
                     /isolate="CF.Pisc.bin.23"
                     /isolation_source="acidic hydrothermal system"
                     /db_xref="taxon:47304"
                     /environmental_sample
                     /geo_loc_name="Italy: Naples, Campi Flegrei, Pisciarelli
                     hydrothermal system"
                     /lat_lon="40.82949 N 14.14728 E"
                     /collection_date="2012-11-16"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAPNVB010000001-JAPNVB010000074
WGS_SCAFLD  NZ_JAPNVB010000001-NZ_JAPNVB010000074
//
LOCUS       NZ_JAQXHQ010000000   1969840 bp    DNA     linear   ENV 17-APR-2025
DEFINITION  MAG: Methanobrevibacter boviskoreani isolate SUG2185, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAQXHQ000000000
VERSION     NZ_JAQXHQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32899611
            Assembly: GCF_029007355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter boviskoreani (pig gut metagenome)
  ORGANISM  Methanobrevibacter boviskoreani
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1969840)
  AUTHORS   Holman,D.B. and Gzyl,K.E.
  TITLE     Metagenome-assembled genomes from pasture and conventional
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1969840)
  AUTHORS   Holman,D.B. and Gzyl,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2023) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQXHQ000000000.1.
            The Methanobrevibacter boviskoreani whole genome shotgun (WGS)
            project has the project accession NZ_JAQXHQ000000000.  This version
            of the project (01) has the accession number NZ_JAQXHQ010000000,
            and consists of sequences JAQXHQ010000001-JAQXHQ010000034.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 21-APR-2022
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.730362x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029007355.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 20:21:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,748
            CDSs (total)                      :: 1,709
            Genes (coding)                    :: 1,696
            CDSs (with protein)               :: 1,696
            Genes (RNA)                       :: 39
            rRNAs                             :: 3 (16S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 3 of 13
            Pseudo Genes (incomplete)         :: 9 of 13
            Pseudo Genes (internal stop)      :: 1 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1969840
                     /organism="Methanobrevibacter boviskoreani"
                     /mol_type="genomic DNA"
                     /isolate="SUG2185"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1348249"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2018"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JAQXHQ010000001-JAQXHQ010000034
WGS_SCAFLD  NZ_JAQXHQ010000001-NZ_JAQXHQ010000034
//
LOCUS       NZ_JAOAJA010000000   2246683 bp    DNA     linear   ENV 18-APR-2025
DEFINITION  MAG: Pyrobaculum aerophilum isolate SKW143, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOAJA000000000
VERSION     NZ_JAOAJA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30305237
            Assembly: GCF_026414425.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum aerophilum (hot springs metagenome)
  ORGANISM  Pyrobaculum aerophilum
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2246683)
  AUTHORS   Liew,K.J., Liang,C.H., Shahar,S., Shamsir,M.S., Goh,K.M. and
            Sani,R.K.
  TITLE     Compendium of high- and medium-quality prokaryotic
            metagenome-assembled genomes from hot spring water and biofilms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2246683)
  AUTHORS   Liew,K.J. and Goh,K.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2022) Faculty of Science, Universiti Teknologi
            Malaysia, T02 Builing, Science Clusters, Skudai, Johor 81310,
            Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOAJA000000000.1.
            The Pyrobaculum aerophilum whole genome shotgun (WGS) project has
            the project accession NZ_JAOAJA000000000.  This version of the
            project (01) has the accession number NZ_JAOAJA010000000, and
            consists of sequences JAOAJA010000001-JAOAJA010000107.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 11.7407x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026414425.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 19:20:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,738
            CDSs (total)                      :: 2,686
            Genes (coding)                    :: 2,590
            CDSs (with protein)               :: 2,590
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 23 of 96
            Pseudo Genes (incomplete)         :: 66 of 96
            Pseudo Genes (internal stop)      :: 18 of 96
            Pseudo Genes (multiple problems)  :: 10 of 96
            CRISPR Arrays                     :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246683
                     /organism="Pyrobaculum aerophilum"
                     /mol_type="genomic DNA"
                     /isolate="SKW143"
                     /isolation_source="alkaline hot spring water"
                     /db_xref="taxon:13773"
                     /environmental_sample
                     /geo_loc_name="Malaysia: Sungkai, Perak"
                     /lat_lon="3.9966 N 101.3931 E"
                     /collection_date="2013-03"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAOAJA010000001-JAOAJA010000107
WGS_SCAFLD  NZ_JAOAJA010000001-NZ_JAOAJA010000107
//
LOCUS       NZ_JAPNVC010000000   1855889 bp    DNA     linear   ENV 19-APR-2025
DEFINITION  MAG: Sulfuracidifex metallicus isolate CF.Pisc.bin.24, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAPNVC000000000
VERSION     NZ_JAPNVC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31719907
            Assembly: GCF_026627365.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Sulfuracidifex metallicus (hot springs metagenome)
  ORGANISM  Sulfuracidifex metallicus
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfuracidifex.
REFERENCE   1  (bases 1 to 1855889)
  AUTHORS   Ugwuanyi,I.R., Fogel,M.L., Bowden,R., Steele,A., De Natale,G.,
            Troise,C., Somma,R., Piochi,M., Mormone,A. and Glamoclija,M.
  TITLE     Comparative Metagenomics at Solfatara and Pisciarelli Hydrothermal
            Systems in Italy Reveal that Ecological Differences Across
            Substrates are not Ubiquitous
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1855889)
  AUTHORS   Ugwuanyi,I.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2022) Earth and Environmental Sciences, Rutgers
            University, 101 Warren Street, Newark, NJ 07102, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPNVC000000000.1.
            The Sulfuracidifex metallicus whole genome shotgun (WGS) project
            has the project accession NZ_JAPNVC000000000.  This version of the
            project (01) has the accession number NZ_JAPNVC010000000, and
            consists of sequences JAPNVC010000001-JAPNVC010000117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 961x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026627365.1-RS_2025_04_16
            Annotation Date                   :: 04/16/2025 19:05:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,063
            CDSs (total)                      :: 2,011
            Genes (coding)                    :: 1,958
            CDSs (with protein)               :: 1,958
            Genes (RNA)                       :: 52
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 18 of 53
            Pseudo Genes (incomplete)         :: 43 of 53
            Pseudo Genes (internal stop)      :: 5 of 53
            Pseudo Genes (multiple problems)  :: 12 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1855889
                     /organism="Sulfuracidifex metallicus"
                     /mol_type="genomic DNA"
                     /isolate="CF.Pisc.bin.24"
                     /isolation_source="acidic hydrothermal system"
                     /db_xref="taxon:47303"
                     /environmental_sample
                     /geo_loc_name="Italy: Naples, Campi Flegrei, Pisciarelli
                     hydrothermal system"
                     /lat_lon="40.82949 N 14.14728 E"
                     /collection_date="2012-11-16"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAPNVC010000001-JAPNVC010000117
WGS_SCAFLD  NZ_JAPNVC010000001-NZ_JAPNVC010000117
//
LOCUS       NZ_JBAVZW010000000   2052532 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD04926_ilm_asm_bin5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVZW000000000
VERSION     NZ_JBAVZW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008936
            Assembly: GCF_049588975.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2052532)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2052532)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVZW000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVZW000000000.  This version of the project
            (01) has the accession number NZ_JBAVZW010000000, and consists of
            sequences JBAVZW010000001-JBAVZW010000082.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049588975.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:49:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,149
            CDSs (total)                      :: 2,098
            Genes (coding)                    :: 2,077
            CDSs (with protein)               :: 2,077
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 0 of 21
            Pseudo Genes (incomplete)         :: 20 of 21
            Pseudo Genes (internal stop)      :: 1 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052532
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD04926_ilm_asm_bin5"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.29413 N 11.80308 E"
                     /collection_date="2021-10-14"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVZW010000001-JBAVZW010000082
WGS_SCAFLD  NZ_JBAVZW010000001-NZ_JBAVZW010000082
//
LOCUS       NZ_JBAWAC010000000   3796164 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Haladaptatus sp. isolate MFD05654_ilm_asm_bin7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAWAC000000000
VERSION     NZ_JBAWAC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008930
            Assembly: GCF_049589095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Haladaptatus sp. (Soil metagenome)
  ORGANISM  Haladaptatus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 3796164)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3796164)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAWAC000000000.1.
            The Haladaptatus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAWAC000000000.  This version of the project
            (01) has the accession number NZ_JBAWAC010000000, and consists of
            sequences JBAWAC010000001-JBAWAC010000683.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049589095.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 01:04:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,284
            CDSs (total)                      :: 4,240
            Genes (coding)                    :: 4,009
            CDSs (with protein)               :: 4,009
            Genes (RNA)                       :: 44
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 231
            CDSs (without protein)            :: 231
            Pseudo Genes (ambiguous residues) :: 0 of 231
            Pseudo Genes (frameshifted)       :: 9 of 231
            Pseudo Genes (incomplete)         :: 216 of 231
            Pseudo Genes (internal stop)      :: 10 of 231
            Pseudo Genes (multiple problems)  :: 4 of 231
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3796164
                     /organism="Haladaptatus sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD05654_ilm_asm_bin7"
                     /isolation_source="Soil from Natural Coastal"
                     /db_xref="taxon:1973141"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.19389 N 11.196 E"
                     /collection_date="2021-07-13"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAWAC010000001-JBAWAC010000683
WGS_SCAFLD  NZ_JBAWAC010000001-NZ_JBAWAC010000683
//
LOCUS       NZ_JBAVER010000000   2261106 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD04928_ilm_asm_bin15, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVER000000000
VERSION     NZ_JBAVER000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40009217
            Assembly: GCF_049587835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Sediment metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2261106)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2261106)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVER000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVER000000000.  This version of the project
            (01) has the accession number NZ_JBAVER010000000, and consists of
            sequences JBAVER010000001-JBAVER010000102.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049587835.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:53:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,357
            CDSs (total)                      :: 2,304
            Genes (coding)                    :: 2,276
            CDSs (with protein)               :: 2,276
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 0 of 28
            Pseudo Genes (incomplete)         :: 28 of 28
            Pseudo Genes (internal stop)      :: 0 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261106
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD04928_ilm_asm_bin15"
                     /isolation_source="Sediment from Natural Freshwater"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="57.19198064 N 10.26143610 E"
                     /collection_date="2021-10-16"
                     /metagenome_source="Sediment metagenome"
                     /metagenomic
WGS         JBAVER010000001-JBAVER010000102
WGS_SCAFLD  NZ_JBAVER010000001-NZ_JBAVER010000102
//
LOCUS       NZ_JBAUVO010000000   1954511 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD04752_ilm_asm_bin4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAUVO000000000
VERSION     NZ_JBAUVO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40009449
            Assembly: GCF_049583265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 1954511)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1954511)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAUVO000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAUVO000000000.  This version of the project
            (01) has the accession number NZ_JBAUVO010000000, and consists of
            sequences JBAUVO010000001-JBAUVO010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049583265.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:49:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,038
            CDSs (total)                      :: 1,984
            Genes (coding)                    :: 1,957
            CDSs (with protein)               :: 1,957
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 0 of 27
            Pseudo Genes (incomplete)         :: 27 of 27
            Pseudo Genes (internal stop)      :: 0 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954511
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD04752_ilm_asm_bin4"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.43229 N 9.42694 E"
                     /collection_date="2021-10-22"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAUVO010000001-JBAUVO010000052
WGS_SCAFLD  NZ_JBAUVO010000001-NZ_JBAUVO010000052
//
LOCUS       NZ_JBEKZF010000000   2340422 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate SPRUCE 692, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEKZF000000000
VERSION     NZ_JBEKZF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40288497
            Assembly: GCF_049510175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (peat metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2340422)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Microbial networks generally resilient to warming and demonstrate
            the ability to obtain electron acceptors from soil organic matter
            in temperate peatland soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2340422)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2024) School of Civil and Environmental
            Engineering, Georgia Institute of Technology, 790 Atlantic Dr NW,
            Atlanta, GA 30332, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEKZF000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBEKZF000000000.  This version of the project
            (01) has the accession number NZ_JBEKZF010000000, and consists of
            sequences JBEKZF010000001-JBEKZF010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049510175.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:17:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,454
            CDSs (total)                      :: 2,399
            Genes (coding)                    :: 2,386
            CDSs (with protein)               :: 2,386
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 9 of 13
            Pseudo Genes (internal stop)      :: 3 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340422
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SPRUCE 692"
                     /isolation_source="Peat samples collected from the inside
                     of the SPRUCE enclosures"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA: SPRUCE facilities, Balsam, Minnesota"
                     /lat_lon="47.50 N 93.45 W"
                     /collection_date="2018-08"
                     /metagenome_source="peat metagenome"
                     /metagenomic
WGS         JBEKZF010000001-JBEKZF010000041
WGS_SCAFLD  NZ_JBEKZF010000001-NZ_JBEKZF010000041
//
LOCUS       NZ_JBEKRH010000000   2582491 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate SPRUCE 506, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEKRH000000000
VERSION     NZ_JBEKRH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40288291
            Assembly: GCF_049518935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (peat metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2582491)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Microbial networks generally resilient to warming and demonstrate
            the ability to obtain electron acceptors from soil organic matter
            in temperate peatland soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2582491)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2024) School of Civil and Environmental
            Engineering, Georgia Institute of Technology, 790 Atlantic Dr NW,
            Atlanta, GA 30332, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEKRH000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBEKRH000000000.  This version of the project
            (01) has the accession number NZ_JBEKRH010000000, and consists of
            sequences JBEKRH010000001-JBEKRH010000045.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049518935.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:16:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,629
            CDSs (total)                      :: 2,575
            Genes (coding)                    :: 2,558
            CDSs (with protein)               :: 2,558
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 3 of 17
            Pseudo Genes (incomplete)         :: 14 of 17
            Pseudo Genes (internal stop)      :: 0 of 17
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582491
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SPRUCE 506"
                     /isolation_source="Peat samples collected from the inside
                     of the SPRUCE enclosures"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA: SPRUCE facilities, Balsam, Minnesota"
                     /lat_lon="47.50 N 93.45 W"
                     /collection_date="2018-08"
                     /metagenome_source="peat metagenome"
                     /metagenomic
WGS         JBEKRH010000001-JBEKRH010000045
WGS_SCAFLD  NZ_JBEKRH010000001-NZ_JBEKRH010000045
//
LOCUS       NZ_JBEKYN010000000   2329009 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate SPRUCE 676, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEKYN000000000
VERSION     NZ_JBEKYN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40288479
            Assembly: GCF_049510915.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (peat metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2329009)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Microbial networks generally resilient to warming and demonstrate
            the ability to obtain electron acceptors from soil organic matter
            in temperate peatland soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2329009)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2024) School of Civil and Environmental
            Engineering, Georgia Institute of Technology, 790 Atlantic Dr NW,
            Atlanta, GA 30332, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEKYN000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBEKYN000000000.  This version of the project
            (01) has the accession number NZ_JBEKYN010000000, and consists of
            sequences JBEKYN010000001-JBEKYN010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049510915.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:14:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,348
            CDSs (total)                      :: 2,294
            Genes (coding)                    :: 2,265
            CDSs (with protein)               :: 2,265
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 21 of 29
            Pseudo Genes (internal stop)      :: 6 of 29
            Pseudo Genes (multiple problems)  :: 2 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2329009
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SPRUCE 676"
                     /isolation_source="Peat samples collected from the inside
                     of the SPRUCE enclosures"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA: SPRUCE facilities, Balsam, Minnesota"
                     /lat_lon="47.50 N 93.45 W"
                     /collection_date="2018-08"
                     /metagenome_source="peat metagenome"
                     /metagenomic
WGS         JBEKYN010000001-JBEKYN010000074
WGS_SCAFLD  NZ_JBEKYN010000001-NZ_JBEKYN010000074
//
LOCUS       NZ_JBAVBN010000000   2177659 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD09567_ilm_asm_bin30, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVBN000000000
VERSION     NZ_JBAVBN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40009299
            Assembly: GCF_049586215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2177659)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2177659)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVBN000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVBN000000000.  This version of the project
            (01) has the accession number NZ_JBAVBN010000000, and consists of
            sequences JBAVBN010000001-JBAVBN010000063.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049586215.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:41:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,259
            CDSs (total)                      :: 2,204
            Genes (coding)                    :: 2,187
            CDSs (with protein)               :: 2,187
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 0 of 17
            Pseudo Genes (incomplete)         :: 16 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177659
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD09567_ilm_asm_bin30"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.25559 N 10.25652 E"
                     /collection_date="2021-10-20"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVBN010000001-JBAVBN010000063
WGS_SCAFLD  NZ_JBAVBN010000001-NZ_JBAVBN010000063
//
LOCUS       NZ_JBAUSM010000000   2129721 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD04899_ilm_asm_bin35, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAUSM000000000
VERSION     NZ_JBAUSM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40009529
            Assembly: GCF_049581685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2129721)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2129721)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAUSM000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAUSM000000000.  This version of the project
            (01) has the accession number NZ_JBAUSM010000000, and consists of
            sequences JBAUSM010000001-JBAUSM010000205.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049581685.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:43:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,239
            CDSs (total)                      :: 2,192
            Genes (coding)                    :: 2,145
            CDSs (with protein)               :: 2,145
            Genes (RNA)                       :: 47
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 0 of 47
            Pseudo Genes (incomplete)         :: 46 of 47
            Pseudo Genes (internal stop)      :: 1 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129721
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD04899_ilm_asm_bin35"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="57.19251 N 10.26111 E"
                     /collection_date="2021-10-16"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAUSM010000001-JBAUSM010000205
WGS_SCAFLD  NZ_JBAUSM010000001-NZ_JBAUSM010000205
//
LOCUS       NZ_JBAVEQ010000000   2324206 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD04928_ilm_asm_bin16, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVEQ000000000
VERSION     NZ_JBAVEQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40009218
            Assembly: GCF_049587815.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Sediment metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2324206)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2324206)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVEQ000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVEQ000000000.  This version of the project
            (01) has the accession number NZ_JBAVEQ010000000, and consists of
            sequences JBAVEQ010000001-JBAVEQ010000229.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049587815.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:54:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,462
            CDSs (total)                      :: 2,416
            Genes (coding)                    :: 2,355
            CDSs (with protein)               :: 2,355
            Genes (RNA)                       :: 46
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 3 of 61
            Pseudo Genes (incomplete)         :: 57 of 61
            Pseudo Genes (internal stop)      :: 1 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324206
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD04928_ilm_asm_bin16"
                     /isolation_source="Sediment from Natural Freshwater"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="57.19198064 N 10.26143610 E"
                     /collection_date="2021-10-16"
                     /metagenome_source="Sediment metagenome"
                     /metagenomic
WGS         JBAVEQ010000001-JBAVEQ010000229
WGS_SCAFLD  NZ_JBAVEQ010000001-NZ_JBAVEQ010000229
//
LOCUS       NZ_JBAWDG010000000   2292944 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD05379_ilm_asm_bin5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAWDG000000000
VERSION     NZ_JBAWDG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008848
            Assembly: GCF_049590635.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2292944)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2292944)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAWDG000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAWDG000000000.  This version of the project
            (01) has the accession number NZ_JBAWDG010000000, and consists of
            sequences JBAWDG010000001-JBAWDG010000166.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049590635.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 01:21:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,446
            CDSs (total)                      :: 2,400
            Genes (coding)                    :: 2,357
            CDSs (with protein)               :: 2,357
            Genes (RNA)                       :: 46
            tRNAs                             :: 45
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 2 of 43
            Pseudo Genes (incomplete)         :: 41 of 43
            Pseudo Genes (internal stop)      :: 1 of 43
            Pseudo Genes (multiple problems)  :: 1 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292944
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD05379_ilm_asm_bin5"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.50597 N 8.82587 E"
                     /collection_date="2021-07-26"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAWDG010000001-JBAWDG010000166
WGS_SCAFLD  NZ_JBAWDG010000001-NZ_JBAWDG010000166
//
LOCUS       NZ_JBMSAT010000000   1436481 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Thermosphaera aggregans isolate
            Thermosphaera_aggregans-CON-C-r01, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMSAT000000000
VERSION     NZ_JBMSAT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44752218
            Assembly: GCF_049414585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermosphaera aggregans (hot springs metagenome)
  ORGANISM  Thermosphaera aggregans
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Thermosphaera.
REFERENCE   1  (bases 1 to 1436481)
  AUTHORS   Inskeep,W.P., Jay,Z.J., Mckay,L.J. and Dlakic,M.
  TITLE     Respiratory processes of early-evolved hyperthermophiles in
            sulfidic and low-oxygen geothermal microbial communities
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1436481)
  AUTHORS   Inskeep,W.P., Jay,Z.J., Mckay,L.J. and Dlakic,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-NOV-2024) Microbiology & Cell Biology, Montana State
            University, 109 Lewis Hall, Bozeman, MT 59717-3520, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMSAT000000000.1.
            The Thermosphaera aggregans whole genome shotgun (WGS) project has
            the project accession NZ_JBMSAT000000000.  This version of the
            project (01) has the accession number NZ_JBMSAT010000000, and
            consists of sequences JBMSAT010000001-JBMSAT010000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 46.6x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049414585.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 00:06:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,680
            CDSs (total)                      :: 1,627
            Genes (coding)                    :: 1,586
            CDSs (with protein)               :: 1,586
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 11 of 41
            Pseudo Genes (incomplete)         :: 26 of 41
            Pseudo Genes (internal stop)      :: 14 of 41
            Pseudo Genes (multiple problems)  :: 10 of 41
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1436481
                     /organism="Thermosphaera aggregans"
                     /mol_type="genomic DNA"
                     /isolate="Thermosphaera_aggregans-CON-C-r01"
                     /isolation_source="Geothermal channel"
                     /db_xref="taxon:54254"
                     /environmental_sample
                     /geo_loc_name="USA: Yellowstone National Park"
                     /lat_lon="44.5564119 N 110.8321604 W"
                     /collection_date="2011-10-13"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMSAT010000001-JBMSAT010000047
WGS_SCAFLD  NZ_JBMSAT010000001-NZ_JBMSAT010000047
//
LOCUS       NZ_JBNAMU010000000   3985285 bp    DNA     linear   BCT 20-APR-2025
DEFINITION  Haloarcula amylolytica strain MBLA0133, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNAMU000000000
VERSION     NZ_JBNAMU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47739212
            Assembly: GCF_049705545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula amylolytica
  ORGANISM  Haloarcula amylolytica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3985285)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Haloarcula amylolytica MBLA0133 whole genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3985285)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2025) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAMU000000000.1.
            The Haloarcula amylolytica whole genome shotgun (WGS) project has
            the project accession NZ_JBNAMU000000000.  This version of the
            project (01) has the accession number NZ_JBNAMU010000000, and
            consists of sequences JBNAMU010000001-JBNAMU010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Prof. Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2024
            Assembly Method        :: Hifiasm v. 0.16.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 548.0x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049705545.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:48:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,090
            CDSs (total)                      :: 4,030
            Genes (coding)                    :: 3,987
            CDSs (with protein)               :: 3,987
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 25 of 43
            Pseudo Genes (incomplete)         :: 31 of 43
            Pseudo Genes (internal stop)      :: 6 of 43
            Pseudo Genes (multiple problems)  :: 15 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3985285
                     /organism="Haloarcula amylolytica"
                     /mol_type="genomic DNA"
                     /strain="MBLA0133"
                     /isolation_source="Solar saltern"
                     /db_xref="taxon:396317"
                     /geo_loc_name="South Korea"
                     /lat_lon="37.402389 N 126.756306 E"
                     /collection_date="2018-05"
WGS         JBNAMU010000001-JBNAMU010000004
WGS_SCAFLD  NZ_JBNAMU010000001-NZ_JBNAMU010000004
//
LOCUS       NZ_JBNAMS010000000   4274844 bp    DNA     linear   BCT 20-APR-2025
DEFINITION  Haloferax prahovense strain MBLA0129, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNAMS000000000
VERSION     NZ_JBNAMS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47738896
            Assembly: GCF_049705765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax prahovense
  ORGANISM  Haloferax prahovense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 4274844)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Haloferax prahovense MBLA0129 whole genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4274844)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2025) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAMS000000000.1.
            The Haloferax prahovense whole genome shotgun (WGS) project has the
            project accession NZ_JBNAMS000000000.  This version of the project
            (01) has the accession number NZ_JBNAMS010000000, and consists of
            sequences JBNAMS010000001-JBNAMS010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Prof. Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2024
            Assembly Method        :: Flye v. 2.9.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1061.0x
            Sequencing Technology  :: PacBio HiFi
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049705765.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:57:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,252
            CDSs (total)                      :: 4,189
            Genes (coding)                    :: 4,126
            CDSs (with protein)               :: 4,126
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 36 of 63
            Pseudo Genes (incomplete)         :: 40 of 63
            Pseudo Genes (internal stop)      :: 18 of 63
            Pseudo Genes (multiple problems)  :: 25 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4274844
                     /organism="Haloferax prahovense"
                     /mol_type="genomic DNA"
                     /strain="MBLA0129"
                     /isolation_source="Solar saltern"
                     /db_xref="taxon:381852"
                     /geo_loc_name="South Korea"
                     /lat_lon="37.402389 N 126.756306 E"
                     /collection_date="2018-05"
WGS         JBNAMS010000001-JBNAMS010000005
WGS_SCAFLD  NZ_JBNAMS010000001-NZ_JBNAMS010000005
//
LOCUS       NZ_JBNAMT010000000   3975064 bp    DNA     linear   BCT 20-APR-2025
DEFINITION  Haloarcula marismortui strain MBLA0131, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNAMT000000000
VERSION     NZ_JBNAMT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47739112
            Assembly: GCF_049705795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula marismortui
  ORGANISM  Haloarcula marismortui
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3975064)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Haloarcula marismortui MBLA0131 whole genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3975064)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2025) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAMT000000000.1.
            The Haloarcula marismortui whole genome shotgun (WGS) project has
            the project accession NZ_JBNAMT000000000.  This version of the
            project (01) has the accession number NZ_JBNAMT010000000, and
            consists of sequences JBNAMT010000001-JBNAMT010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Prof. Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2024
            Assembly Method        :: Flye v. 2.9.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1107.0x
            Sequencing Technology  :: PacBio HiFi
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049705795.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:59:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,094
            CDSs (total)                      :: 4,038
            Genes (coding)                    :: 3,983
            CDSs (with protein)               :: 3,983
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 22 of 55
            Pseudo Genes (incomplete)         :: 37 of 55
            Pseudo Genes (internal stop)      :: 15 of 55
            Pseudo Genes (multiple problems)  :: 16 of 55
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975064
                     /organism="Haloarcula marismortui"
                     /mol_type="genomic DNA"
                     /strain="MBLA0131"
                     /isolation_source="Solar saltern"
                     /db_xref="taxon:2238"
                     /geo_loc_name="South Korea"
                     /lat_lon="37.402389 N 126.756306 E"
                     /collection_date="2018-05"
WGS         JBNAMT010000001-JBNAMT010000006
WGS_SCAFLD  NZ_JBNAMT010000001-NZ_JBNAMT010000006
//
LOCUS       NZ_JBNAMQ010000000   2749774 bp    DNA     linear   BCT 20-APR-2025
DEFINITION  Halobacterium sp. MBLA0001, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBNAMQ000000000
VERSION     NZ_JBNAMQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47737807
            Assembly: GCF_049705385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium sp. MBLA0001
  ORGANISM  Halobacterium sp. MBLA0001
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2749774)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Halobacterium salinarum MBLA0001 whole genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2749774)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2025) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAMQ000000000.1.
            The Halobacterium sp. MBLA0001 whole genome shotgun (WGS) project
            has the project accession NZ_JBNAMQ000000000.  This version of the
            project (01) has the accession number NZ_JBNAMQ010000000, and
            consists of sequences JBNAMQ010000001-JBNAMQ010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Prof. Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2024
            Assembly Method        :: Flye v. 2.9.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1811.0x
            Sequencing Technology  :: PacBio HiFi
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049705385.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 14:00:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,875
            CDSs (total)                      :: 2,823
            Genes (coding)                    :: 2,746
            CDSs (with protein)               :: 2,746
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 17 of 77
            Pseudo Genes (incomplete)         :: 65 of 77
            Pseudo Genes (internal stop)      :: 8 of 77
            Pseudo Genes (multiple problems)  :: 13 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2749774
                     /organism="Halobacterium sp. MBLA0001"
                     /mol_type="genomic DNA"
                     /strain="MBLA0001"
                     /isolation_source="Solar saltern"
                     /db_xref="taxon:3413511"
                     /geo_loc_name="South Korea"
                     /lat_lon="37.402389 N 126.756306 E"
                     /collection_date="2018-05"
WGS         JBNAMQ010000001-JBNAMQ010000013
WGS_SCAFLD  NZ_JBNAMQ010000001-NZ_JBNAMQ010000013
//
LOCUS       NZ_JBNAMR010000000   2973861 bp    DNA     linear   BCT 20-APR-2025
DEFINITION  Halobacterium hubeiense strain MBLA0010, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNAMR000000000
VERSION     NZ_JBNAMR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47737820
            Assembly: GCF_049705405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium hubeiense
  ORGANISM  Halobacterium hubeiense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2973861)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Halobacterium hubeiense MBLA0010 whole genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2973861)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2025) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAMR000000000.1.
            The Halobacterium hubeiense whole genome shotgun (WGS) project has
            the project accession NZ_JBNAMR000000000.  This version of the
            project (01) has the accession number NZ_JBNAMR010000000, and
            consists of sequences JBNAMR010000001-JBNAMR010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Prof. Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2024
            Assembly Method        :: Flye v. 2.9.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1504.0x
            Sequencing Technology  :: PacBio HiFi
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049705405.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:50:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,217
            CDSs (total)                      :: 3,166
            Genes (coding)                    :: 3,105
            CDSs (with protein)               :: 3,105
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 19 of 61
            Pseudo Genes (incomplete)         :: 46 of 61
            Pseudo Genes (internal stop)      :: 11 of 61
            Pseudo Genes (multiple problems)  :: 13 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2973861
                     /organism="Halobacterium hubeiense"
                     /mol_type="genomic DNA"
                     /strain="MBLA0010"
                     /isolation_source="Solar saltern"
                     /db_xref="taxon:1407499"
                     /geo_loc_name="South Korea"
                     /lat_lon="37.402389 N 126.756306 E"
                     /collection_date="2018-05"
WGS         JBNAMR010000001-JBNAMR010000005
WGS_SCAFLD  NZ_JBNAMR010000001-NZ_JBNAMR010000005
//
LOCUS       NZ_JBAROC010000000   2065235 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD02397_ilm_asm_bin9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAROC000000000
VERSION     NZ_JBAROC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40011985
            Assembly: GCF_049641905.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2065235)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2065235)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAROC000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAROC000000000.  This version of the project
            (01) has the accession number NZ_JBAROC010000000, and consists of
            sequences JBAROC010000001-JBAROC010000212.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049641905.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 12:43:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,194
            CDSs (total)                      :: 2,148
            Genes (coding)                    :: 2,106
            CDSs (with protein)               :: 2,106
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 1 of 42
            Pseudo Genes (incomplete)         :: 41 of 42
            Pseudo Genes (internal stop)      :: 0 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065235
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD02397_ilm_asm_bin9"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.88476 N 9.45392 E"
                     /collection_date="2020-10-08"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAROC010000001-JBAROC010000212
WGS_SCAFLD  NZ_JBAROC010000001-NZ_JBAROC010000212
//
LOCUS       NZ_JBASCG010000000   2080946 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanomethylovorans sp. isolate MFD13487_ilm_asm_bin5, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBASCG000000000
VERSION     NZ_JBASCG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40012381
            Assembly: GCF_049651445.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanomethylovorans sp. (Water metagenome)
  ORGANISM  Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2080946)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2080946)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBASCG000000000.1.
            The Methanomethylovorans sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBASCG000000000.  This version of the
            project (01) has the accession number NZ_JBASCG010000000, and
            consists of sequences JBASCG010000001-JBASCG010000127.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049651445.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 12:45:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,102
            CDSs (total)                      :: 2,057
            Genes (coding)                    :: 2,029
            CDSs (with protein)               :: 2,029
            Genes (RNA)                       :: 45
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 4 of 28
            Pseudo Genes (incomplete)         :: 25 of 28
            Pseudo Genes (internal stop)      :: 6 of 28
            Pseudo Genes (multiple problems)  :: 4 of 28
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080946
                     /organism="Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD13487_ilm_asm_bin5"
                     /isolation_source="Water from Urban Biogas"
                     /db_xref="taxon:2758717"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.398 N 10.415 E"
                     /collection_date="2022-11-09"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBASCG010000001-JBASCG010000127
WGS_SCAFLD  NZ_JBASCG010000001-NZ_JBASCG010000127
//
LOCUS       NZ_JBASCH010000000   2118701 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD13487_ilm_asm_bin2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBASCH000000000
VERSION     NZ_JBASCH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40012380
            Assembly: GCF_049651545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2118701)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2118701)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBASCH000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBASCH000000000.  This version of the project
            (01) has the accession number NZ_JBASCH010000000, and consists of
            sequences JBASCH010000001-JBASCH010000213.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049651545.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:06:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,229
            CDSs (total)                      :: 2,178
            Genes (coding)                    :: 2,119
            CDSs (with protein)               :: 2,119
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 10 of 59
            Pseudo Genes (incomplete)         :: 55 of 59
            Pseudo Genes (internal stop)      :: 4 of 59
            Pseudo Genes (multiple problems)  :: 9 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118701
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD13487_ilm_asm_bin2"
                     /isolation_source="Water from Urban Biogas"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.398 N 10.415 E"
                     /collection_date="2022-11-09"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBASCH010000001-JBASCH010000213
WGS_SCAFLD  NZ_JBASCH010000001-NZ_JBASCH010000213
//
LOCUS       NZ_JBASNY010000000   2202774 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD13467_ilm_asm_bin10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBASNY000000000
VERSION     NZ_JBASNY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40012075
            Assembly: GCF_049657745.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2202774)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2202774)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBASNY000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBASNY000000000.  This version of the project
            (01) has the accession number NZ_JBASNY010000000, and consists of
            sequences JBASNY010000001-JBASNY010000363.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049657745.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:15:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,410
            CDSs (total)                      :: 2,365
            Genes (coding)                    :: 2,242
            CDSs (with protein)               :: 2,242
            Genes (RNA)                       :: 45
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 9 of 123
            Pseudo Genes (incomplete)         :: 119 of 123
            Pseudo Genes (internal stop)      :: 2 of 123
            Pseudo Genes (multiple problems)  :: 6 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202774
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD13467_ilm_asm_bin10"
                     /isolation_source="Water from Urban Biogas"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.3983 N 8.6122 E"
                     /collection_date="2022-11-29"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBASNY010000001-JBASNY010000363
WGS_SCAFLD  NZ_JBASNY010000001-NZ_JBASNY010000363
//
LOCUS       NZ_JBASFD010000000   2113175 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD13488_ilm_asm_bin27, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBASFD000000000
VERSION     NZ_JBASFD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40012306
            Assembly: GCF_049652865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2113175)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2113175)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBASFD000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBASFD000000000.  This version of the project
            (01) has the accession number NZ_JBASFD010000000, and consists of
            sequences JBASFD010000001-JBASFD010000167.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049652865.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:15:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,217
            CDSs (total)                      :: 2,171
            Genes (coding)                    :: 2,127
            CDSs (with protein)               :: 2,127
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 7 of 44
            Pseudo Genes (incomplete)         :: 43 of 44
            Pseudo Genes (internal stop)      :: 3 of 44
            Pseudo Genes (multiple problems)  :: 7 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113175
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD13488_ilm_asm_bin27"
                     /isolation_source="Water from Urban Biogas"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.6407 N 12.5059 E"
                     /collection_date="2022-11-08"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBASFD010000001-JBASFD010000167
WGS_SCAFLD  NZ_JBASFD010000001-NZ_JBASFD010000167
//
LOCUS       NZ_JBASPA010000000   2282899 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD13484_ilm_asm_bin29, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBASPA000000000
VERSION     NZ_JBASPA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40012047
            Assembly: GCF_049658865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2282899)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2282899)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBASPA000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBASPA000000000.  This version of the project
            (01) has the accession number NZ_JBASPA010000000, and consists of
            sequences JBASPA010000001-JBASPA010000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049658865.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:22:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,296
            CDSs (total)                      :: 2,249
            Genes (coding)                    :: 2,220
            CDSs (with protein)               :: 2,220
            Genes (RNA)                       :: 47
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 10 of 29
            Pseudo Genes (incomplete)         :: 26 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 8 of 29
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282899
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD13484_ilm_asm_bin29"
                     /isolation_source="Water from Urban Biogas"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.3983 N 8.6122 E"
                     /collection_date="2022-11-12"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBASPA010000001-JBASPA010000066
WGS_SCAFLD  NZ_JBASPA010000001-NZ_JBASPA010000066
//
LOCUS       NZ_JBASRB010000000   2602673 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate MFD12107_ilm_asm_bin9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBASRB000000000
VERSION     NZ_JBASRB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40011994
            Assembly: GCF_049660765.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (Water metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2602673)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2602673)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBASRB000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBASRB000000000.  This version of the project
            (01) has the accession number NZ_JBASRB010000000, and consists of
            sequences JBASRB010000001-JBASRB010000182.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049660765.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:18:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,760
            CDSs (total)                      :: 2,714
            Genes (coding)                    :: 2,635
            CDSs (with protein)               :: 2,635
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 9 of 79
            Pseudo Genes (incomplete)         :: 72 of 79
            Pseudo Genes (internal stop)      :: 7 of 79
            Pseudo Genes (multiple problems)  :: 7 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2602673
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD12107_ilm_asm_bin9"
                     /isolation_source="Water from Subterranean Freshwater"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /collection_date="2021-09-01"
                     /metagenome_source="Water metagenome"
                     /metagenomic
WGS         JBASRB010000001-JBASRB010000182
WGS_SCAFLD  NZ_JBASRB010000001-NZ_JBASRB010000182
//
LOCUS       NZ_JBNAMV010000000   2505615 bp    DNA     linear   BCT 20-APR-2025
DEFINITION  Salarchaeum japonicum strain MBLA0217, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNAMV000000000
VERSION     NZ_JBNAMV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47739218
            Assembly: GCF_049705945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salarchaeum japonicum
  ORGANISM  Salarchaeum japonicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1  (bases 1 to 2505615)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Salarchaeum japonicum MBLA0217 whole genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2505615)
  AUTHORS   Hwang,C.Y., Lee,D. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2025) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAMV000000000.1.
            The Salarchaeum japonicum whole genome shotgun (WGS) project has
            the project accession NZ_JBNAMV000000000.  This version of the
            project (01) has the accession number NZ_JBNAMV010000000, and
            consists of sequences JBNAMV010000001-JBNAMV010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Prof. Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2024
            Assembly Method        :: Flye v. 2.9.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1972.0x
            Sequencing Technology  :: PacBio HiFi
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049705945.1-RS_2025_04_17
            Annotation Date                   :: 04/17/2025 13:43:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,718
            CDSs (total)                      :: 2,668
            Genes (coding)                    :: 2,649
            CDSs (with protein)               :: 2,649
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 5 of 19
            Pseudo Genes (incomplete)         :: 13 of 19
            Pseudo Genes (internal stop)      :: 5 of 19
            Pseudo Genes (multiple problems)  :: 3 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505615
                     /organism="Salarchaeum japonicum"
                     /mol_type="genomic DNA"
                     /strain="MBLA0217"
                     /isolation_source="Solar saltern"
                     /db_xref="taxon:555573"
                     /geo_loc_name="South Korea"
                     /lat_lon="37.402389 N 126.756306 E"
                     /collection_date="2018-05"
WGS         JBNAMV010000001-JBNAMV010000004
WGS_SCAFLD  NZ_JBNAMV010000001-NZ_JBNAMV010000004
//
LOCUS       NZ_JBAVVW010000000   2150560 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD01092_ilm_asm_bin7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVVW000000000
VERSION     NZ_JBAVVW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008406
            Assembly: GCF_049697435.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2150560)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2150560)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVVW000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVVW000000000.  This version of the project
            (01) has the accession number NZ_JBAVVW010000000, and consists of
            sequences JBAVVW010000001-JBAVVW010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049697435.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:43:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,243
            CDSs (total)                      :: 2,187
            Genes (coding)                    :: 2,165
            CDSs (with protein)               :: 2,165
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 21 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150560
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD01092_ilm_asm_bin7"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.12315 N 8.96476 E"
                     /collection_date="2020-06-01"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVVW010000001-JBAVVW010000088
WGS_SCAFLD  NZ_JBAVVW010000001-NZ_JBAVVW010000088
//
LOCUS       NZ_JBAVKK010000000   2403316 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanobacterium sp. isolate MFD05686_ilm_asm_bin15, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBAVKK000000000
VERSION     NZ_JBAVKK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008704
            Assembly: GCF_049688275.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (Soil metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2403316)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2403316)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVKK000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVKK000000000.  This version of the project
            (01) has the accession number NZ_JBAVKK010000000, and consists of
            sequences JBAVKK010000001-JBAVKK010000158.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049688275.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:35:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,447
            CDSs (total)                      :: 2,400
            Genes (coding)                    :: 2,372
            CDSs (with protein)               :: 2,372
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 1 of 28
            Pseudo Genes (incomplete)         :: 26 of 28
            Pseudo Genes (internal stop)      :: 1 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403316
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD05686_ilm_asm_bin15"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.38221 N 9.51679 E"
                     /collection_date="2021-07-26"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVKK010000001-JBAVKK010000158
WGS_SCAFLD  NZ_JBAVKK010000001-NZ_JBAVKK010000158
//
LOCUS       NZ_JBNAKP010000000   3919606 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanosarcina sp. isolate MSAR-AD2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNAKP000000000
VERSION     NZ_JBNAKP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47598130
            Sequence Read Archive: SRR32974618
            Assembly: GCF_049706645.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosarcina sp. (soil metagenome)
  ORGANISM  Methanosarcina sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1  (bases 1 to 3919606)
  AUTHORS   Tian,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Biology Centre CAS, Institute of Soil
            Biology and Biochemistry, Na Sadkach, Ceske Budejovice 37005, Czech
            Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAKP000000000.1.
            The Methanosarcina sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBNAKP000000000.  This version of the project
            (01) has the accession number NZ_JBNAKP010000000, and consists of
            sequences JBNAKP010000001-JBNAKP010000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.1.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1000x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049706645.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:52:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,382
            CDSs (total)                      :: 3,326
            Genes (coding)                    :: 3,256
            CDSs (with protein)               :: 3,256
            Genes (RNA)                       :: 56
            rRNAs                             :: 3 (5S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 19 of 70
            Pseudo Genes (incomplete)         :: 49 of 70
            Pseudo Genes (internal stop)      :: 18 of 70
            Pseudo Genes (multiple problems)  :: 12 of 70
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3919606
                     /organism="Methanosarcina sp."
                     /mol_type="genomic DNA"
                     /isolate="MSAR-AD2"
                     /isolation_source="arid desert soil biocrust"
                     /db_xref="taxon:2213"
                     /environmental_sample
                     /geo_loc_name="Israel: Midreshet Ben-Gurion, Negev Desert"
                     /lat_lon="30.7861 N 34.7672 E"
                     /collection_date="2017-06"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBNAKP010000001-JBNAKP010000073
WGS_SCAFLD  NZ_JBNAKP010000001-NZ_JBNAKP010000073
//
LOCUS       NZ_JBAVIF010000000   2314701 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD02961_ilm_asm_bin50, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVIF000000000
VERSION     NZ_JBAVIF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40009619
            Assembly: GCF_049686595.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2314701)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2314701)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVIF000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVIF000000000.  This version of the project
            (01) has the accession number NZ_JBAVIF010000000, and consists of
            sequences JBAVIF010000001-JBAVIF010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049686595.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:34:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,396
            CDSs (total)                      :: 2,343
            Genes (coding)                    :: 2,323
            CDSs (with protein)               :: 2,323
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 1 of 20
            Pseudo Genes (incomplete)         :: 19 of 20
            Pseudo Genes (internal stop)      :: 1 of 20
            Pseudo Genes (multiple problems)  :: 1 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314701
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD02961_ilm_asm_bin50"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.93496 N 8.59345 E"
                     /collection_date="2020-10-14"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVIF010000001-JBAVIF010000049
WGS_SCAFLD  NZ_JBAVIF010000001-NZ_JBAVIF010000049
//
LOCUS       NZ_JBAVIG010000000   2434931 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD02961_ilm_asm_bin34, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVIG000000000
VERSION     NZ_JBAVIG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40009618
            Assembly: GCF_049686655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2434931)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2434931)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVIG000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVIG000000000.  This version of the project
            (01) has the accession number NZ_JBAVIG010000000, and consists of
            sequences JBAVIG010000001-JBAVIG010000083.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049686655.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:41:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,502
            CDSs (total)                      :: 2,453
            Genes (coding)                    :: 2,427
            CDSs (with protein)               :: 2,427
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 6 of 26
            Pseudo Genes (incomplete)         :: 21 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434931
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD02961_ilm_asm_bin34"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.93496 N 8.59345 E"
                     /collection_date="2020-10-14"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVIG010000001-JBAVIG010000083
WGS_SCAFLD  NZ_JBAVIG010000001-NZ_JBAVIG010000083
//
LOCUS       NZ_JBNAKN010000000   3053500 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanobacterium sp. isolate MBAC-AD2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNAKN000000000
VERSION     NZ_JBNAKN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47598128
            Sequence Read Archive: SRR32974620
            Assembly: GCF_049723875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (soil metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 3053500)
  AUTHORS   Tian,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Biology Centre CAS, Institute of Soil
            Biology and Biochemistry, Na Sadkach, Ceske Budejovice 37005, Czech
            Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAKN000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBNAKN000000000.  This version of the project
            (01) has the accession number NZ_JBNAKN010000000, and consists of
            sequences JBNAKN010000001-JBNAKN010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. v1.1.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1260x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049723875.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:56:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,094
            CDSs (total)                      :: 3,050
            Genes (coding)                    :: 3,040
            CDSs (with protein)               :: 3,040
            Genes (RNA)                       :: 44
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 2 of 10
            Pseudo Genes (incomplete)         :: 7 of 10
            Pseudo Genes (internal stop)      :: 1 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3053500
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="MBAC-AD2"
                     /isolation_source="arid desert soil biocrust"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="Israel: Midreshet Ben-Gurion, Negev Desert"
                     /lat_lon="30.7861 N 34.7672 E"
                     /collection_date="2017-06"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBNAKN010000001-JBNAKN010000026
WGS_SCAFLD  NZ_JBNAKN010000001-NZ_JBNAKN010000026
//
LOCUS       NZ_JBAVWP010000000   2122266 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD01828_ilm_asm_bin3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVWP000000000
VERSION     NZ_JBAVWP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008387
            Assembly: GCF_049697855.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2122266)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2122266)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVWP000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVWP000000000.  This version of the project
            (01) has the accession number NZ_JBAVWP010000000, and consists of
            sequences JBAVWP010000001-JBAVWP010000084.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049697855.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:38:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,244
            CDSs (total)                      :: 2,188
            Genes (coding)                    :: 2,155
            CDSs (with protein)               :: 2,155
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 0 of 33
            Pseudo Genes (incomplete)         :: 33 of 33
            Pseudo Genes (internal stop)      :: 0 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122266
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD01828_ilm_asm_bin3"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.82764 N 9.92368 E"
                     /collection_date="2020-07-20"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVWP010000001-JBAVWP010000084
WGS_SCAFLD  NZ_JBAVWP010000001-NZ_JBAVWP010000084
//
LOCUS       NZ_JBAVVX010000000   2420475 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanobacterium sp. isolate MFD01092_ilm_asm_bin20, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBAVVX000000000
VERSION     NZ_JBAVVX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008405
            Assembly: GCF_049697495.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (Soil metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2420475)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2420475)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVVX000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVVX000000000.  This version of the project
            (01) has the accession number NZ_JBAVVX010000000, and consists of
            sequences JBAVVX010000001-JBAVVX010000312.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049697495.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:42:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,548
            CDSs (total)                      :: 2,506
            Genes (coding)                    :: 2,456
            CDSs (with protein)               :: 2,456
            Genes (RNA)                       :: 42
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 0 of 50
            Pseudo Genes (incomplete)         :: 43 of 50
            Pseudo Genes (internal stop)      :: 7 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420475
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD01092_ilm_asm_bin20"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.12315 N 8.96476 E"
                     /collection_date="2020-06-01"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVVX010000001-JBAVVX010000312
WGS_SCAFLD  NZ_JBAVVX010000001-NZ_JBAVVX010000312
//
LOCUS       NZ_JBAVWT010000000   1957735 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD01805_ilm_asm_bin14, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVWT000000000
VERSION     NZ_JBAVWT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008383
            Assembly: GCF_049697935.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 1957735)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1957735)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVWT000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVWT000000000.  This version of the project
            (01) has the accession number NZ_JBAVWT010000000, and consists of
            sequences JBAVWT010000001-JBAVWT010000204.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049697935.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:39:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,106
            CDSs (total)                      :: 2,053
            Genes (coding)                    :: 1,992
            CDSs (with protein)               :: 1,992
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 0 of 61
            Pseudo Genes (incomplete)         :: 56 of 61
            Pseudo Genes (internal stop)      :: 5 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957735
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD01805_ilm_asm_bin14"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.83058 N 9.91425 E"
                     /collection_date="2020-07-20"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVWT010000001-JBAVWT010000204
WGS_SCAFLD  NZ_JBAVWT010000001-NZ_JBAVWT010000204
//
LOCUS       NZ_JBAVKJ010000000   2210738 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD05686_ilm_asm_bin45, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVKJ000000000
VERSION     NZ_JBAVKJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008705
            Assembly: GCF_049688255.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2210738)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2210738)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVKJ000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVKJ000000000.  This version of the project
            (01) has the accession number NZ_JBAVKJ010000000, and consists of
            sequences JBAVKJ010000001-JBAVKJ010000216.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049688255.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:36:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,405
            CDSs (total)                      :: 2,353
            Genes (coding)                    :: 2,300
            CDSs (with protein)               :: 2,300
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 1 of 53
            Pseudo Genes (incomplete)         :: 49 of 53
            Pseudo Genes (internal stop)      :: 3 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210738
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD05686_ilm_asm_bin45"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="56.38221 N 9.51679 E"
                     /collection_date="2021-07-26"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVKJ010000001-JBAVKJ010000216
WGS_SCAFLD  NZ_JBAVKJ010000001-NZ_JBAVKJ010000216
//
LOCUS       NZ_JBNARH010000000   1582969 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothermobacter sp. isolate Kamch4316-2DMB-10, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBNARH000000000
VERSION     NZ_JBNARH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47539265
            Assembly: GCF_049719305.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothermobacter sp. (hot springs metagenome)
  ORGANISM  Methanothermobacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1582969)
  AUTHORS   Chernyshov,M.P., Merkel,A.Y. and Khomyakova,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2025) Department of Extremophliles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNARH000000000.1.
            The Methanothermobacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBNARH000000000.  This version of the
            project (01) has the accession number NZ_JBNARH010000000, and
            consists of sequences JBNARH010000001-JBNARH010000096.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MetaWRAP v. 1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 325x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049719305.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:49:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,768
            CDSs (total)                      :: 1,730
            Genes (coding)                    :: 1,710
            CDSs (with protein)               :: 1,710
            Genes (RNA)                       :: 38
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 2 of 20
            Pseudo Genes (incomplete)         :: 19 of 20
            Pseudo Genes (internal stop)      :: 0 of 20
            Pseudo Genes (multiple problems)  :: 1 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582969
                     /organism="Methanothermobacter sp."
                     /mol_type="genomic DNA"
                     /isolate="Kamch4316-2DMB-10"
                     /isolation_source="enrichment culture from terrestrial hot
                     spring sediment"
                     /db_xref="taxon:1884223"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.499 N 159.992 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBNARH010000001-JBNARH010000096
WGS_SCAFLD  NZ_JBNARH010000001-NZ_JBNARH010000096
//
LOCUS       NZ_JBAVMX010000000   2087845 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanoregula sp. isolate MFD01857_ilm_asm_bin9, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBAVMX000000000
VERSION     NZ_JBAVMX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40008639
            Assembly: GCF_049690535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (Soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2087845)
  AUTHORS   Kirkegaard,R.
  TITLE     MFD short read MAGs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2087845)
  AUTHORS   Kirkegaard,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) Chemistry and Bioscience, Aalborg
            University, Fredrik Bajers Vej 7H, Aalborg 9220, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAVMX000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBAVMX000000000.  This version of the project
            (01) has the accession number NZ_JBAVMX010000000, and consists of
            sequences JBAVMX010000001-JBAVMX010000141.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-NOV-2023
            Assembly Method        :: MegaHit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049690535.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:35:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,237
            CDSs (total)                      :: 2,187
            Genes (coding)                    :: 2,140
            CDSs (with protein)               :: 2,140
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 0 of 47
            Pseudo Genes (incomplete)         :: 46 of 47
            Pseudo Genes (internal stop)      :: 1 of 47
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087845
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MFD01857_ilm_asm_bin9"
                     /isolation_source="Soil from Natural Bogs, mires and fens"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="Denmark"
                     /lat_lon="55.58704 N 8.50031 E"
                     /collection_date="2021-05-31"
                     /metagenome_source="Soil metagenome"
                     /metagenomic
WGS         JBAVMX010000001-JBAVMX010000141
WGS_SCAFLD  NZ_JBAVMX010000001-NZ_JBAVMX010000141
//
LOCUS       NZ_JBNAVD010000000   1373403 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Infirmifilum uzonense isolate Kamch4342-D-MF-029, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBNAVD000000000
VERSION     NZ_JBNAVD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47539365
            Assembly: GCF_049700395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Infirmifilum uzonense (hot springs metagenome)
  ORGANISM  Infirmifilum uzonense
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Infirmifilum.
REFERENCE   1  (bases 1 to 1373403)
  AUTHORS   Chernyshov,M.P., Merkel,A.Y. and Khomyakova,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2025) Department of Extremophliles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAVD000000000.1.
            The Infirmifilum uzonense whole genome shotgun (WGS) project has
            the project accession NZ_JBNAVD000000000.  This version of the
            project (01) has the accession number NZ_JBNAVD010000000, and
            consists of sequences JBNAVD010000001-JBNAVD010000063.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MetaWRAP v. 1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 32x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049700395.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:54:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,548
            CDSs (total)                      :: 1,502
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 19 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1373403
                     /organism="Infirmifilum uzonense"
                     /mol_type="genomic DNA"
                     /isolate="Kamch4342-D-MF-029"
                     /isolation_source="enrichment culture from terrestrial hot
                     spring sediment"
                     /db_xref="taxon:1550241"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.499 N 160.011 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBNAVD010000001-JBNAVD010000063
WGS_SCAFLD  NZ_JBNAVD010000001-NZ_JBNAVD010000063
//
LOCUS       NZ_JBNATD010000000   1454713 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Infirmifilum uzonense isolate Kamch4342-2A-MF-05, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBNATD000000000
VERSION     NZ_JBNATD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47539313
            Assembly: GCF_049702605.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Infirmifilum uzonense (hot springs metagenome)
  ORGANISM  Infirmifilum uzonense
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Infirmifilum.
REFERENCE   1  (bases 1 to 1454713)
  AUTHORS   Chernyshov,M.P., Merkel,A.Y. and Khomyakova,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2025) Department of Extremophliles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNATD000000000.1.
            The Infirmifilum uzonense whole genome shotgun (WGS) project has
            the project accession NZ_JBNATD000000000.  This version of the
            project (01) has the accession number NZ_JBNATD010000000, and
            consists of sequences JBNATD010000001-JBNATD010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MetaWRAP v. 1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 213x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049702605.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 13:01:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,621
            CDSs (total)                      :: 1,566
            Genes (coding)                    :: 1,544
            CDSs (with protein)               :: 1,544
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 20 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1454713
                     /organism="Infirmifilum uzonense"
                     /mol_type="genomic DNA"
                     /isolate="Kamch4342-2A-MF-05"
                     /isolation_source="enrichment culture from terrestrial hot
                     spring sediment"
                     /db_xref="taxon:1550241"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.499 N 160.011 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBNATD010000001-JBNATD010000074
WGS_SCAFLD  NZ_JBNATD010000001-NZ_JBNATD010000074
//
LOCUS       NZ_JBNASF010000000   1640569 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothermobacter sp. isolate Kamch4336-1-MF-09, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBNASF000000000
VERSION     NZ_JBNASF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47539289
            Assembly: GCF_049720995.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothermobacter sp. (hot springs metagenome)
  ORGANISM  Methanothermobacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1640569)
  AUTHORS   Chernyshov,M.P., Merkel,A.Y. and Khomyakova,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2025) Department of Extremophliles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNASF000000000.1.
            The Methanothermobacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBNASF000000000.  This version of the
            project (01) has the accession number NZ_JBNASF010000000, and
            consists of sequences JBNASF010000001-JBNASF010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MetaWRAP v. 1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 240x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049720995.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 12:58:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,803
            CDSs (total)                      :: 1,764
            Genes (coding)                    :: 1,750
            CDSs (with protein)               :: 1,750
            Genes (RNA)                       :: 39
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 3 of 14
            Pseudo Genes (incomplete)         :: 12 of 14
            Pseudo Genes (internal stop)      :: 0 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640569
                     /organism="Methanothermobacter sp."
                     /mol_type="genomic DNA"
                     /isolate="Kamch4336-1-MF-09"
                     /isolation_source="enrichment culture from terrestrial hot
                     spring sediment"
                     /db_xref="taxon:1884223"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.498 N 160.015 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBNASF010000001-JBNASF010000050
WGS_SCAFLD  NZ_JBNASF010000001-NZ_JBNASF010000050
//
LOCUS       NZ_JBNARD010000000   1726575 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate Kamch4316-2DMB-06, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBNARD000000000
VERSION     NZ_JBNARD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47539261
            Assembly: GCF_049719835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (hot springs metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 1726575)
  AUTHORS   Chernyshov,M.P., Merkel,A.Y. and Khomyakova,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2025) Department of Extremophliles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNARD000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBNARD000000000.  This version of the project
            (01) has the accession number NZ_JBNARD010000000, and consists of
            sequences JBNARD010000001-JBNARD010000121.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MetaWRAP v. 1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 857x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049719835.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 13:09:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,731
            CDSs (total)                      :: 1,687
            Genes (coding)                    :: 1,671
            CDSs (with protein)               :: 1,671
            Genes (RNA)                       :: 44
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 1 of 16
            Pseudo Genes (incomplete)         :: 15 of 16
            Pseudo Genes (internal stop)      :: 0 of 16
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726575
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="Kamch4316-2DMB-06"
                     /isolation_source="enrichment culture from terrestrial hot
                     spring sediment"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.499 N 159.992 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBNARD010000001-JBNARD010000121
WGS_SCAFLD  NZ_JBNARD010000001-NZ_JBNARD010000121
//
LOCUS       NZ_JBNASC010000000   1696584 bp    DNA     linear   ENV 20-APR-2025
DEFINITION  MAG: Methanothrix sp. isolate Kamch4336-1-MF-06, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBNASC000000000
VERSION     NZ_JBNASC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47539286
            Assembly: GCF_049721055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (hot springs metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 1696584)
  AUTHORS   Chernyshov,M.P., Merkel,A.Y. and Khomyakova,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2025) Department of Extremophliles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNASC000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBNASC000000000.  This version of the project
            (01) has the accession number NZ_JBNASC010000000, and consists of
            sequences JBNASC010000001-JBNASC010000160.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MetaWRAP v. 1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 493x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049721055.1-RS_2025_04_18
            Annotation Date                   :: 04/18/2025 13:08:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,728
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,658
            CDSs (with protein)               :: 1,658
            Genes (RNA)                       :: 43
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 1 of 27
            Pseudo Genes (incomplete)         :: 26 of 27
            Pseudo Genes (internal stop)      :: 0 of 27
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696584
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="Kamch4336-1-MF-06"
                     /isolation_source="enrichment culture from terrestrial hot
                     spring sediment"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.498 N 160.015 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBNASC010000001-JBNASC010000160
WGS_SCAFLD  NZ_JBNASC010000001-NZ_JBNASC010000160
//
LOCUS       NZ_JARVXG010000000   2425823 bp    DNA     linear   BCT 21-APR-2025
DEFINITION  Methanobacterium formicicum strain MF, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARVXG000000000
VERSION     NZ_JARVXG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34164049
            Assembly: GCF_029848115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium formicicum
  ORGANISM  Methanobacterium formicicum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2425823)
  AUTHORS   Doloman,A., Besteman,M., Sanders,M. and Sousa,D.Z.
  TITLE     The role of quorum sensing and exopolysaccharides in the formation
            of macroaggregates of Syntrophobacter fumaroxidans and
            hydrogenotrophic methanogens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2425823)
  AUTHORS   Doloman,A. and Sousa,D.Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2023) Laboratory of Microbiology, Wageningen
            University, Stippeneng 4, P.O. Box 8033, Building Helix 124,
            Wageningen, Gelderland 6700 EH, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARVXG000000000.1.
            The Methanobacterium formicicum whole genome shotgun (WGS) project
            has the project accession NZ_JARVXG000000000.  This version of the
            project (01) has the accession number NZ_JARVXG010000000, and
            consists of sequences JARVXG010000001-JARVXG010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSM 1535.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 11-APR-2023
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 700.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029848115.1-RS_2025_04_19
            Annotation Date                   :: 04/19/2025 12:09:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,453
            CDSs (total)                      :: 2,400
            Genes (coding)                    :: 2,384
            CDSs (with protein)               :: 2,384
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 0 of 16
            Pseudo Genes (incomplete)         :: 15 of 16
            Pseudo Genes (internal stop)      :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425823
                     /organism="Methanobacterium formicicum"
                     /mol_type="genomic DNA"
                     /strain="MF"
                     /culture_collection="DSM:1535"
                     /type_material="type strain of Methanobacterium
                     formicicum"
                     /db_xref="taxon:2162"
                     /geo_loc_name="Netherlands: Wageningen"
                     /collection_date="2023-02-21"
WGS         JARVXG010000001-JARVXG010000059
WGS_SCAFLD  NZ_JARVXG010000001-NZ_JARVXG010000059
//
LOCUS       NZ_JARXOF010000000   3081052 bp    DNA     linear   BCT 26-APR-2025
DEFINITION  Halobacterium rubrum strain R9-3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JARXOF000000000
VERSION     NZ_JARXOF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34247965
            Assembly: GCF_029872365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium rubrum
  ORGANISM  Halobacterium rubrum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 3081052)
  AUTHORS   Wei,W.
  TITLE     Study on the nitrite self-degradation process in pickled radish
            under the synergistic regulation of prokaryotic microorganisms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3081052)
  AUTHORS   Wei,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2023) School of Food and Biological Engineering,
            Jiangsu University, No. 301 Xuefu Road, Jingkou District,
            Zhenjiang, Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARXOF000000000.1.
            The Halobacterium rubrum whole genome shotgun (WGS) project has the
            project accession NZ_JARXOF000000000.  This version of the project
            (01) has the accession number NZ_JARXOF010000000, and consists of
            sequences JARXOF010000001-JARXOF010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029872365.1-RS_2025_04_25
            Annotation Date                   :: 04/25/2025 11:13:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,307
            CDSs (total)                      :: 3,249
            Genes (coding)                    :: 3,221
            CDSs (with protein)               :: 3,221
            Genes (RNA)                       :: 58
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 4 of 28
            Pseudo Genes (incomplete)         :: 22 of 28
            Pseudo Genes (internal stop)      :: 6 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081052
                     /organism="Halobacterium rubrum"
                     /mol_type="genomic DNA"
                     /strain="R9-3"
                     /isolation_source="pickled radish"
                     /db_xref="taxon:1341552"
                     /geo_loc_name="China"
                     /collection_date="2018-09-25"
WGS         JARXOF010000001-JARXOF010000009
WGS_SCAFLD  NZ_JARXOF010000001-NZ_JARXOF010000009
//
LOCUS       NZ_VOAH01000000      2644479 bp    DNA     linear   BCT 26-APR-2025
DEFINITION  Candidatus Nitrosocosmicus arcticus strain Kfb, whole genome
            shotgun sequencing project.
ACCESSION   NZ_VOAH00000000
VERSION     NZ_VOAH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10440610
            Assembly: GCF_007826885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosocosmicus arcticus
  ORGANISM  Candidatus Nitrosocosmicus arcticus
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Candidatus Nitrosocosmicus.
REFERENCE   1  (bases 1 to 2644479)
  AUTHORS   Alves,R.J.E., Kerou,M., Zappe,A., Bittner,R., Abby,S.S.,
            Schmidt,H.A., Pfeifer,K. and Schleper,C.
  TITLE     Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote
            Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing
            Temperatures
  JOURNAL   Front Microbiol 10 (2019) In press
  REMARK    Publication Status: Available-Online prior to print
            DOI: 10.3389/fmicb.2019.01571
REFERENCE   2  (bases 1 to 2644479)
  AUTHORS   Schmidt,H.A. and Zappe,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2019) Center for Integrative Bioinformatics
            Vienna (CIBIV), University of Vienna, Campus Vienna Biocenter 5
            (VBC5), Vienna 1030, Austria
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VOAH00000000.1.
            The Candidatus Nitrosocosmicus arcticus whole genome shotgun (WGS)
            project has the project accession NZ_VOAH00000000.  This version of
            the project (01) has the accession number NZ_VOAH01000000, and
            consists of sequences VOAH01000001-VOAH01000027.
            Bacteria and source DNA available from Schleper, Archaea Biology
            and Ecogenomics, University of Vienna, Vienna, Austria.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.0
            Genome Coverage       :: 1500x
            Sequencing Technology :: Illumina HiSeq; IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007826885.1-RS_2025_04_26
            Annotation Date                   :: 04/26/2025 10:46:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,760
            CDSs (total)                      :: 2,711
            Genes (coding)                    :: 2,678
            CDSs (with protein)               :: 2,678
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 6 of 33
            Pseudo Genes (incomplete)         :: 25 of 33
            Pseudo Genes (internal stop)      :: 6 of 33
            Pseudo Genes (multiple problems)  :: 4 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644479
                     /organism="Candidatus Nitrosocosmicus arcticus"
                     /mol_type="genomic DNA"
                     /strain="Kfb"
                     /isolation_source="top mineral soil from frost boil in
                     Arctic tundra fen"
                     /db_xref="taxon:2035267"
                     /geo_loc_name="Norway: Knudsenheia, Svalbard"
                     /collection_date="2009-08"
                     /collected_by="Ricardo J. E. Alves"
WGS         VOAH01000001-VOAH01000027
WGS_SCAFLD  NZ_ML675578-NZ_ML675599
//
LOCUS       NZ_JBCEYR010000000   2450891 bp    DNA     linear   ENV 26-APR-2025
DEFINITION  MAG: Methanothrix soehngenii isolate MillC_msp_mb_bin.55, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBCEYR000000000
VERSION     NZ_JBCEYR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40975151
            Assembly: GCF_038448995.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix soehngenii (bioreactor metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2450891)
  AUTHORS   Nesbo,C.L., Yang,M.I., Sharan,A., Meyer,T. and Edwards,E.A.
  TITLE     Metagenomes and metagenome assembled genomes from anaerobic
            digesters at three Canadian pulp and paper mills
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2450891)
  AUTHORS   Nesbo,C.L. and Edwards,E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2024) Chemical Engineering and Applied Chemistry,
            University of Toronto, 200 College Street, Toronto, Ontario M5S3E5,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBCEYR000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_JBCEYR000000000.  This version of the
            project (01) has the accession number NZ_JBCEYR010000000, and
            consists of sequences JBCEYR010000001-JBCEYR010000111.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 120x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038448995.1-RS_2025_04_26
            Annotation Date                   :: 04/26/2025 12:34:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,542
            CDSs (total)                      :: 2,494
            Genes (coding)                    :: 2,459
            CDSs (with protein)               :: 2,459
            Genes (RNA)                       :: 48
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 9 of 35
            Pseudo Genes (incomplete)         :: 31 of 35
            Pseudo Genes (internal stop)      :: 3 of 35
            Pseudo Genes (multiple problems)  :: 8 of 35
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450891
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="MillC_msp_mb_bin.55"
                     /isolation_source="anaerobic bioreactor at pulpmill"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="Canada: Alberta"
                     /lat_lon="55.3025 N 114.7598 W"
                     /collection_date="2017"
                     /metagenome_source="bioreactor metagenome"
                     /metagenomic
WGS         JBCEYR010000001-JBCEYR010000111
WGS_SCAFLD  NZ_JBCEYR010000001-NZ_JBCEYR010000111
//
LOCUS       NZ_JBCEYQ010000000   2295832 bp    DNA     linear   ENV 26-APR-2025
DEFINITION  MAG: Methanothrix soehngenii isolate MillB_pbmsp_mb_MAG_00008,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JBCEYQ000000000
VERSION     NZ_JBCEYQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40975150
            Assembly: GCF_038448585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix soehngenii (bioreactor metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2295832)
  AUTHORS   Nesbo,C.L., Yang,M.I., Sharan,A., Meyer,T. and Edwards,E.A.
  TITLE     Metagenomes and metagenome assembled genomes from anaerobic
            digesters at three Canadian pulp and paper mills
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2295832)
  AUTHORS   Nesbo,C.L. and Edwards,E.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2024) Chemical Engineering and Applied Chemistry,
            University of Toronto, 200 College Street, Toronto, Ontario M5S3E5,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBCEYQ000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_JBCEYQ000000000.  This version of the
            project (01) has the accession number NZ_JBCEYQ010000000, and
            consists of sequences JBCEYQ010000001-JBCEYQ010000093.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-FEB-2021
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 54x
            Sequencing Technology  :: Illumina NextSeq; PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038448585.1-RS_2025_04_26
            Annotation Date                   :: 04/26/2025 12:34:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,413
            CDSs (total)                      :: 2,369
            Genes (coding)                    :: 2,331
            CDSs (with protein)               :: 2,331
            Genes (RNA)                       :: 44
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 12 of 38
            Pseudo Genes (incomplete)         :: 29 of 38
            Pseudo Genes (internal stop)      :: 3 of 38
            Pseudo Genes (multiple problems)  :: 6 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295832
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="MillB_pbmsp_mb_MAG_00008"
                     /isolation_source="anaerobic bioreactor at pulpmill"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="Canada: Alberta"
                     /lat_lon="54.1274 N 115.6516 W"
                     /collection_date="2017-07-26"
                     /metagenome_source="bioreactor metagenome"
                     /metagenomic
WGS         JBCEYQ010000001-JBCEYQ010000093
WGS_SCAFLD  NZ_JBCEYQ010000001-NZ_JBCEYQ010000093
//
LOCUS       NZ_LXWN01000000      1245544 bp    DNA     linear   BCT 27-APR-2025
DEFINITION  Candidatus Nitrosopelagicus brevis strain U25, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LXWN00000000
VERSION     NZ_LXWN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04990266
            Assembly: GCF_003045125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosopelagicus brevis
  ORGANISM  Candidatus Nitrosopelagicus brevis
            Archaea; Nitrososphaerota.
REFERENCE   1  (bases 1 to 1245544)
  AUTHORS   Carini,P.
  TITLE     Transcriptomics of ammonia oxidizing archaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1245544)
  AUTHORS   Dupont,C. and Santoro,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2016) Microbial and Environmental Genomics, J.
            Craig Venter Institute, 4120 Capricorn Lane, San Diego, CA 92037,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LXWN00000000.1.
            The Candidatus Nitrosopelagicus brevis whole genome shotgun (WGS)
            project has the project accession NZ_LXWN00000000.  This version of
            the project (01) has the accession number NZ_LXWN01000000, and
            consists of sequences LXWN01000001-LXWN01000003.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2015
            Assembly Method        :: SPAdes v. metaspades beta
            Assembly Name          :: CN25urea_metaspades
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003045125.1-RS_2025_04_27
            Annotation Date                   :: 04/27/2025 09:47:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,526
            CDSs (total)                      :: 1,479
            Genes (coding)                    :: 1,477
            CDSs (with protein)               :: 1,477
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 2 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1245544
                     /organism="Candidatus Nitrosopelagicus brevis"
                     /mol_type="genomic DNA"
                     /strain="U25"
                     /isolation_source="Coastal eastern subtropical pacific"
                     /db_xref="taxon:1410606"
                     /geo_loc_name="Pacific Ocean"
                     /lat_lon="35.46 N 124.91 W"
                     /collection_date="2007-07"
WGS         LXWN01000001-LXWN01000003
WGS_SCAFLD  NZ_LXWN01000001-NZ_LXWN01000003
//
LOCUS       NZ_CAJVUI010000000   1953936 bp    DNA     linear   BCT 28-APR-2025
DEFINITION  Methanobrevibacter oralis strain YH, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJVUI000000000
VERSION     NZ_CAJVUI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA9459756
            Assembly: GCF_912073625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter oralis
  ORGANISM  Methanobrevibacter oralis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1953936)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2021) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJVUI000000000.1.
            The Methanobrevibacter oralis whole genome shotgun (WGS) project
            has the project accession NZ_CAJVUI000000000.  This version of the
            project (01) has the accession number NZ_CAJVUI010000000, and
            consists of sequences CAJVUI010000001-CAJVUI010000014.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_912073625.1-RS_2025_04_28
            Annotation Date                   :: 04/28/2025 09:33:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,943
            CDSs (total)                      :: 1,903
            Genes (coding)                    :: 1,876
            CDSs (with protein)               :: 1,876
            Genes (RNA)                       :: 40
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 9 of 27
            Pseudo Genes (incomplete)         :: 20 of 27
            Pseudo Genes (internal stop)      :: 5 of 27
            Pseudo Genes (multiple problems)  :: 5 of 27
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953936
                     /organism="Methanobrevibacter oralis"
                     /mol_type="genomic DNA"
                     /strain="YH"
                     /db_xref="taxon:66851"
WGS         CAJVUI010000001-CAJVUI010000014
WGS_SCAFLD  NZ_CAJVUI010000001-NZ_CAJVUI010000014
//
LOCUS       NZ_JAGGKO010000000   2815940 bp    DNA     linear   BCT 29-APR-2025
DEFINITION  Halarchaeum rubridurum strain DSM 22443, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGKO000000000
VERSION     NZ_JAGGKO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18245742
            Assembly: GCF_017873775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum rubridurum
  ORGANISM  Halarchaeum rubridurum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1  (bases 1 to 2815940)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2815940)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGKO000000000.1.
            The Halarchaeum rubridurum whole genome shotgun (WGS) project has
            the project accession NZ_JAGGKO000000000.  This version of the
            project (01) has the accession number NZ_JAGGKO010000000, and
            consists of sequences JAGGKO010000001-JAGGKO010000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 359.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017873775.1-RS_2025_04_29
            Annotation Date                   :: 04/29/2025 10:04:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,936
            CDSs (total)                      :: 2,882
            Genes (coding)                    :: 2,826
            CDSs (with protein)               :: 2,826
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 21 of 56
            Pseudo Genes (incomplete)         :: 43 of 56
            Pseudo Genes (internal stop)      :: 8 of 56
            Pseudo Genes (multiple problems)  :: 11 of 56
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815940
                     /organism="Halarchaeum rubridurum"
                     /mol_type="genomic DNA"
                     /strain="DSM 22443"
                     /culture_collection="DSM:22443"
                     /type_material="type strain of Halarchaeum rubridurum"
                     /db_xref="taxon:489911"
WGS         JAGGKO010000001-JAGGKO010000017
WGS_SCAFLD  NZ_JAGGKO010000001-NZ_JAGGKO010000017
//
LOCUS       NZ_JAGGKD010000000   3122090 bp    DNA     linear   BCT 29-APR-2025
DEFINITION  Methanolobus bombayensis strain DSM 7082, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGKD000000000
VERSION     NZ_JAGGKD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18247048
            Assembly: GCF_017873415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolobus bombayensis
  ORGANISM  Methanolobus bombayensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 3122090)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3122090)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGKD000000000.1.
            The Methanolobus bombayensis whole genome shotgun (WGS) project has
            the project accession NZ_JAGGKD000000000.  This version of the
            project (01) has the accession number NZ_JAGGKD010000000, and
            consists of sequences JAGGKD010000001-JAGGKD010000035.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 292.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017873415.1-RS_2025_04_29
            Annotation Date                   :: 04/29/2025 09:56:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,941
            CDSs (total)                      :: 2,887
            Genes (coding)                    :: 2,867
            CDSs (with protein)               :: 2,867
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 5 of 20
            Pseudo Genes (incomplete)         :: 12 of 20
            Pseudo Genes (internal stop)      :: 6 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122090
                     /organism="Methanolobus bombayensis"
                     /mol_type="genomic DNA"
                     /strain="DSM 7082"
                     /culture_collection="DSM:7082"
                     /type_material="type strain of Methanolobus bombayensis"
                     /db_xref="taxon:38023"
WGS         JAGGKD010000001-JAGGKD010000035
WGS_SCAFLD  NZ_JAGGKD010000001-NZ_JAGGKD010000035
//
LOCUS       NZ_JAGGKL010000000   2468550 bp    DNA     linear   BCT 29-APR-2025
DEFINITION  Methanobacterium petrolearium strain DSM 22353, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAGGKL000000000
VERSION     NZ_JAGGKL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18250255
            Assembly: GCF_017873625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium petrolearium
  ORGANISM  Methanobacterium petrolearium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2468550)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2468550)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGKL000000000.1.
            The Methanobacterium petrolearium whole genome shotgun (WGS)
            project has the project accession NZ_JAGGKL000000000.  This version
            of the project (01) has the accession number NZ_JAGGKL010000000,
            and consists of sequences JAGGKL010000001-JAGGKL010000026.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 423.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017873625.1-RS_2025_04_29
            Annotation Date                   :: 04/29/2025 10:01:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,421
            CDSs (total)                      :: 2,374
            Genes (coding)                    :: 2,367
            CDSs (with protein)               :: 2,367
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 3 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 0 of 7
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468550
                     /organism="Methanobacterium petrolearium"
                     /mol_type="genomic DNA"
                     /strain="DSM 22353"
                     /culture_collection="DSM:22353"
                     /type_material="type strain of Methanobacterium
                     petrolearium"
                     /db_xref="taxon:710190"
                     /geo_loc_name="Japan: Kagoshima"
                     /lat_lon="31.59 N 130.56 E"
WGS         JAGGKL010000001-JAGGKL010000026
WGS_SCAFLD  NZ_JAGGKL010000001-NZ_JAGGKL010000026
//
LOCUS       NZ_JAGIKY010000000   3122714 bp    DNA     linear   BCT 30-APR-2025
DEFINITION  Halarchaeum nitratireducens strain DSM 26612, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGIKY000000000
VERSION     NZ_JAGIKY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18245933
            Assembly: GCF_017874695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum nitratireducens
  ORGANISM  Halarchaeum nitratireducens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1  (bases 1 to 3122714)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3122714)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGIKY000000000.1.
            The Halarchaeum nitratireducens whole genome shotgun (WGS) project
            has the project accession NZ_JAGIKY000000000.  This version of the
            project (01) has the accession number NZ_JAGIKY010000000, and
            consists of sequences JAGIKY010000001-JAGIKY010000031.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 201.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017874695.1-RS_2025_04_30
            Annotation Date                   :: 04/30/2025 09:42:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,238
            CDSs (total)                      :: 3,175
            Genes (coding)                    :: 3,106
            CDSs (with protein)               :: 3,106
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 18 of 69
            Pseudo Genes (incomplete)         :: 52 of 69
            Pseudo Genes (internal stop)      :: 13 of 69
            Pseudo Genes (multiple problems)  :: 11 of 69
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122714
                     /organism="Halarchaeum nitratireducens"
                     /mol_type="genomic DNA"
                     /strain="DSM 26612"
                     /culture_collection="DSM:26612"
                     /type_material="type strain of Halarchaeum solikamskense"
                     /db_xref="taxon:489913"
WGS         JAGIKY010000001-JAGIKY010000031
WGS_SCAFLD  NZ_JAGIKY010000001-NZ_JAGIKY010000031
//
LOCUS       NZ_JAGINF010000000   1752845 bp    DNA     linear   BCT 30-APR-2025
DEFINITION  Methanococcus maripaludis strain DSM 2771, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGINF000000000
VERSION     NZ_JAGINF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18247784
            Assembly: GCF_017875815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1752845)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1752845)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGINF000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_JAGINF000000000.  This version of the
            project (01) has the accession number NZ_JAGINF010000000, and
            consists of sequences JAGINF010000001-JAGINF010000013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 512.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017875815.1-RS_2025_04_30
            Annotation Date                   :: 04/30/2025 09:52:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,853
            Genes (coding)                    :: 1,842
            CDSs (with protein)               :: 1,842
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 4 of 11
            Pseudo Genes (incomplete)         :: 6 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752845
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="DSM 2771"
                     /culture_collection="DSM:2771"
                     /type_material="type strain of Methanococcus deltae Corder
                     et al. 1988"
                     /db_xref="taxon:39152"
                     /geo_loc_name="Mexico:Gulf of Mexico, Mississippi River
                     delta"
WGS         JAGINF010000001-JAGINF010000013
WGS_SCAFLD  NZ_JAGINF010000001-NZ_JAGINF010000013
//
LOCUS       NZ_JAGGMU010000000   1794899 bp    DNA     linear   BCT 30-APR-2025
DEFINITION  Methanococcus voltae strain A2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAGGMU000000000
VERSION     NZ_JAGGMU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18261343
            Assembly: GCF_017875625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus voltae
  ORGANISM  Methanococcus voltae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1794899)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1794899)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGMU000000000.1.
            The Methanococcus voltae whole genome shotgun (WGS) project has the
            project accession NZ_JAGGMU000000000.  This version of the project
            (01) has the accession number NZ_JAGGMU010000000, and consists of
            sequences JAGGMU010000001-JAGGMU010000013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 613.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017875625.1-RS_2025_04_30
            Annotation Date                   :: 04/30/2025 09:48:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,631
            CDSs (total)                      :: 1,587
            Genes (coding)                    :: 1,581
            CDSs (with protein)               :: 1,581
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 5 of 6
            Pseudo Genes (internal stop)      :: 1 of 6
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794899
                     /organism="Methanococcus voltae"
                     /mol_type="genomic DNA"
                     /strain="A2"
                     /db_xref="taxon:2188"
                     /geo_loc_name="USA: Florida, Tampa Bay"
WGS         JAGGMU010000001-JAGGMU010000013
WGS_SCAFLD  NZ_JAGGMU010000001-NZ_JAGGMU010000013
//
LOCUS       NZ_AHKJ01000000      2807552 bp    DNA     linear   BCT 01-MAY-2025
DEFINITION  Metallosphaera yellowstonensis MK1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AHKJ00000000
VERSION     NZ_AHKJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02261413
            Assembly: GCF_000243315.1
KEYWORDS    WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Metallosphaera yellowstonensis MK1
  ORGANISM  Metallosphaera yellowstonensis MK1
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2807552)
  AUTHORS   Lucas,S., Han,J., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L.,
            Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L.,
            Kyrpides,N., Kozubal,M., Macur,R.E., Jay,Z., Inskeep,W. and
            Woyke,T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Improved High-Quality Draft sequence of Metallosphaera
            yellowstonensis MK1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2807552)
  AUTHORS   Lucas,S., Han,J., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L.,
            Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L.,
            Kyrpides,N., Kozubal,M., Macur,R.E., Jay,Z., Inskeep,W. and
            Woyke,T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JAN-2012) US DOE Joint Genome Institute, 2800
            Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHKJ00000000.1.
            The Metallosphaera yellowstonensis MK1 whole genome shotgun (WGS)
            project has the project accession NZ_AHKJ00000000.  This version of
            the project (01) has the accession number NZ_AHKJ01000000, and
            consists of sequences AHKJ01000001-AHKJ01000120.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4089280
            Source DNA and Organism available from William Inskeep
            (binskeep@montana.edu)
            Contacts: William Inskeep (binskeep@montana.edu)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Whole genome sequencing and draft assembly at JGI-PGF
            Annotation by JGI-ORNL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Metallosphaera sp. MK1
            collection_date     :: Missing
            lat_lon             :: 44.76 -110.74
            depth               :: Missing
            alt_elev            :: Missing
            country             :: USA
            environment         :: Fresh water, Hot spring
            num_replicons       :: 1
            ref_biomaterial     :: Missing
            biotic_relationship :: Free living
            trophic_level       :: Chemolithoautotroph
            rel_to_oxygen       :: Facultative
            isol_growth_condt   :: Missing
            sequencing_meth     :: WGS
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Improved High-Quality Draft
            GOLD Stamp ID       :: Gi04920
            Funding Program     :: DOE-CSP 2008
            Gene Calling Method :: Prodigal
            Isolation Site      :: Yellowstone National Park, USA
            Cell Shape          :: Coccus-shaped
            Temperature Range   :: Thermophile
            Temperature Optimum :: 65C
            pH                  :: 2 - 3
            Gram Staining       :: Gram-
            Diseases            :: None
            Phenotypes          :: Acidophile
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Improved High-Quality Draft
            Current Finishing Status :: Improved High-Quality Draft
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: 454; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000243315.1-RS_2025_05_01
            Annotation Date                   :: 05/01/2025 09:11:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,292
            CDSs (total)                      :: 3,239
            Genes (coding)                    :: 2,831
            CDSs (with protein)               :: 2,831
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 408
            CDSs (without protein)            :: 408
            Pseudo Genes (ambiguous residues) :: 0 of 408
            Pseudo Genes (frameshifted)       :: 269 of 408
            Pseudo Genes (incomplete)         :: 234 of 408
            Pseudo Genes (internal stop)      :: 71 of 408
            Pseudo Genes (multiple problems)  :: 152 of 408
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2807552
                     /organism="Metallosphaera yellowstonensis MK1"
                     /mol_type="genomic DNA"
                     /strain="MK1"
                     /isolation_source="freshwater hot spring, Yellowstone
                     National Park, USA"
                     /db_xref="taxon:671065"
                     /geo_loc_name="USA"
                     /lat_lon="44.76 N 110.74 W"
WGS         AHKJ01000001-AHKJ01000120
WGS_SCAFLD  NZ_JH597752-NZ_JH597772
//
LOCUS       NZ_DUJN01000000      1724298 bp    DNA     linear   ENV 01-MAY-2025
DEFINITION  Pyrococcus horikoshii isolate UBA8834, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DUJN00000000
VERSION     NZ_DUJN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13193041
            Sequence Read Archive: SRR606249
            Assembly: GCF_013329775.1
KEYWORDS    WGS; ENV; RefSeq; TPA:assembly.
SOURCE      Pyrococcus horikoshii
  ORGANISM  Pyrococcus horikoshii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1724298)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 1724298)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DUJN00000000.1.
            The Pyrococcus horikoshii whole genome shotgun (WGS) project has
            the project accession NZ_DUJN00000000.  This version of the project
            (01) has the accession number NZ_DUJN01000000, and consists of
            sequences DUJN01000001-DUJN01000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013329775.1-RS_2025_05_01
            Annotation Date                   :: 05/01/2025 10:18:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,918
            CDSs (total)                      :: 1,860
            Genes (coding)                    :: 1,840
            CDSs (with protein)               :: 1,840
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 8 of 20
            Pseudo Genes (incomplete)         :: 11 of 20
            Pseudo Genes (internal stop)      :: 4 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724298
                     /organism="Pyrococcus horikoshii"
                     /mol_type="genomic DNA"
                     /isolate="UBA8834"
                     /db_xref="taxon:53953"
                     /environmental_sample
                     /metagenomic
WGS         DUJN01000001-DUJN01000008
WGS_SCAFLD  NZ_DUJN01000001-NZ_DUJN01000008
//
LOCUS       NZ_DUJP01000000      2152798 bp    DNA     linear   ENV 01-MAY-2025
DEFINITION  Pyrobaculum aerophilum isolate UBA8839, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DUJP00000000
VERSION     NZ_DUJP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13193043
            Sequence Read Archive: SRR606249
            Assembly: GCF_013329805.1
KEYWORDS    WGS; ENV; RefSeq; TPA:assembly.
SOURCE      Pyrobaculum aerophilum
  ORGANISM  Pyrobaculum aerophilum
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2152798)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2152798)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DUJP00000000.1.
            The Pyrobaculum aerophilum whole genome shotgun (WGS) project has
            the project accession NZ_DUJP00000000.  This version of the project
            (01) has the accession number NZ_DUJP01000000, and consists of
            sequences DUJP01000001-DUJP01000039.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013329805.1-RS_2025_05_01
            Annotation Date                   :: 05/01/2025 10:35:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,574
            CDSs (total)                      :: 2,527
            Genes (coding)                    :: 2,491
            CDSs (with protein)               :: 2,491
            Genes (RNA)                       :: 47
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 14 of 36
            Pseudo Genes (incomplete)         :: 21 of 36
            Pseudo Genes (internal stop)      :: 7 of 36
            Pseudo Genes (multiple problems)  :: 5 of 36
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152798
                     /organism="Pyrobaculum aerophilum"
                     /mol_type="genomic DNA"
                     /isolate="UBA8839"
                     /db_xref="taxon:13773"
                     /environmental_sample
                     /metagenomic
WGS         DUJP01000001-DUJP01000039
WGS_SCAFLD  NZ_DUJP01000001-NZ_DUJP01000039
//
LOCUS       NZ_DUJO01000000      2508291 bp    DNA     linear   ENV 01-MAY-2025
DEFINITION  Sulfurisphaera tokodaii isolate UBA8838, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DUJO00000000
VERSION     NZ_DUJO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13193042
            Sequence Read Archive: SRR606249
            Assembly: GCF_013329795.1
KEYWORDS    WGS; ENV; RefSeq; TPA:assembly.
SOURCE      Sulfurisphaera tokodaii
  ORGANISM  Sulfurisphaera tokodaii
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfurisphaera.
REFERENCE   1  (bases 1 to 2508291)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2508291)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DUJO00000000.1.
            The Sulfurisphaera tokodaii whole genome shotgun (WGS) project has
            the project accession NZ_DUJO00000000.  This version of the project
            (01) has the accession number NZ_DUJO01000000, and consists of
            sequences DUJO01000001-DUJO01000062.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013329795.1-RS_2025_05_01
            Annotation Date                   :: 05/01/2025 10:21:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,829
            CDSs (total)                      :: 2,780
            Genes (coding)                    :: 2,674
            CDSs (with protein)               :: 2,674
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 51 of 106
            Pseudo Genes (incomplete)         :: 74 of 106
            Pseudo Genes (internal stop)      :: 12 of 106
            Pseudo Genes (multiple problems)  :: 26 of 106
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508291
                     /organism="Sulfurisphaera tokodaii"
                     /mol_type="genomic DNA"
                     /isolate="UBA8838"
                     /db_xref="taxon:111955"
                     /environmental_sample
                     /metagenomic
WGS         DUJO01000001-DUJO01000062
WGS_SCAFLD  NZ_DUJO01000001-NZ_DUJO01000062
//
LOCUS       NZ_WHYS01000000      2326940 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Acidianus ambivalens strain DSM 3772, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WHYS00000000
VERSION     NZ_WHYS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13103967
            Assembly: GCF_009428885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidianus ambivalens
  ORGANISM  Acidianus ambivalens
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Acidianus.
REFERENCE   1  (bases 1 to 2326940)
  AUTHORS   Ward,L.M., Bertran,E. and Johnston,D.
  TITLE     Comparative genomics of sulfur disproportionating microorganisms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2326940)
  AUTHORS   Ward,L.M., Bertran,E. and Johnston,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2019) Earth and Planetary Sciences, Harvard
            University, 24 Oxford Street, Cambridge, MA 02138, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WHYS00000000.1.
            The Acidianus ambivalens whole genome shotgun (WGS) project has the
            project accession NZ_WHYS00000000.  This version of the project
            (01) has the accession number NZ_WHYS01000000, and consists of
            sequences WHYS01000001-WHYS01000065.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 07-APR-2019
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009428885.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:05:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,753
            CDSs (total)                      :: 2,701
            Genes (coding)                    :: 2,606
            CDSs (with protein)               :: 2,606
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 38 of 95
            Pseudo Genes (incomplete)         :: 63 of 95
            Pseudo Genes (internal stop)      :: 15 of 95
            Pseudo Genes (multiple problems)  :: 18 of 95
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326940
                     /organism="Acidianus ambivalens"
                     /mol_type="genomic DNA"
                     /strain="DSM 3772"
                     /isolation_source="continental solfataric fields"
                     /culture_collection="DSM:3772"
                     /type_material="type strain of Acidianus ambivalens"
                     /db_xref="taxon:2283"
                     /geo_loc_name="Iceland"
                     /collection_date="1986"
WGS         WHYS01000001-WHYS01000065
WGS_SCAFLD  NZ_WHYS01000001-NZ_WHYS01000065
//
LOCUS       NZ_CAJEJA010000000   3058149 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Haloquadratum walsbyi isolate D2T01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJEJA000000000
VERSION     NZ_CAJEJA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7074294
            Assembly: GCF_903989545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Haloquadratum walsbyi (hypersaline lake metagenome)
  ORGANISM  Haloquadratum walsbyi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloquadratum.
REFERENCE   1  (bases 1 to 3058149)
  AUTHORS   Viver TVP,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2020) IMEDEA, Marine microbiology group, 07190,
            07190, Balearic Islands, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJEJA000000000.1.
            The Haloquadratum walsbyi whole genome shotgun (WGS) project has
            the project accession NZ_CAJEJA000000000.  This version of the
            project (01) has the accession number NZ_CAJEJA010000000, and
            consists of sequences CAJEJA010000001-CAJEJA010000258.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903989545.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:16:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,883
            CDSs (total)                      :: 2,842
            Genes (coding)                    :: 2,655
            CDSs (with protein)               :: 2,655
            Genes (RNA)                       :: 41
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 187
            CDSs (without protein)            :: 187
            Pseudo Genes (ambiguous residues) :: 0 of 187
            Pseudo Genes (frameshifted)       :: 59 of 187
            Pseudo Genes (incomplete)         :: 146 of 187
            Pseudo Genes (internal stop)      :: 45 of 187
            Pseudo Genes (multiple problems)  :: 49 of 187
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058149
                     /organism="Haloquadratum walsbyi"
                     /mol_type="genomic DNA"
                     /isolate="D2T01"
                     /isolation_source="Hipersaline environment"
                     /db_xref="taxon:293091"
                     /environmental_sample
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         CAJEJA010000001-CAJEJA010000258
WGS_SCAFLD  NZ_CAJEJA010000001-NZ_CAJEJA010000258
//
LOCUS       NZ_CAJEJC010000000   2732916 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Haloquadratum walsbyi isolate D2T01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJEJC000000000
VERSION     NZ_CAJEJC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7074294
            Assembly: GCF_903989535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Haloquadratum walsbyi (hypersaline lake metagenome)
  ORGANISM  Haloquadratum walsbyi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloquadratum.
REFERENCE   1  (bases 1 to 2732916)
  AUTHORS   Viver TVP,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2020) IMEDEA, Marine microbiology group, 07190,
            07190, Balearic Islands, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJEJC000000000.1.
            The Haloquadratum walsbyi whole genome shotgun (WGS) project has
            the project accession NZ_CAJEJC000000000.  This version of the
            project (01) has the accession number NZ_CAJEJC010000000, and
            consists of sequences CAJEJC010000001-CAJEJC010000479.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903989535.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:15:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,637
            CDSs (total)                      :: 2,591
            Genes (coding)                    :: 2,386
            CDSs (with protein)               :: 2,386
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 205
            CDSs (without protein)            :: 205
            Pseudo Genes (ambiguous residues) :: 0 of 205
            Pseudo Genes (frameshifted)       :: 64 of 205
            Pseudo Genes (incomplete)         :: 163 of 205
            Pseudo Genes (internal stop)      :: 38 of 205
            Pseudo Genes (multiple problems)  :: 47 of 205
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2732916
                     /organism="Haloquadratum walsbyi"
                     /mol_type="genomic DNA"
                     /isolate="D2T01"
                     /isolation_source="Hipersaline environment"
                     /db_xref="taxon:293091"
                     /environmental_sample
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         CAJEJC010000001-CAJEJC010000479
WGS_SCAFLD  NZ_CAJEJC010000001-NZ_CAJEJC010000479
//
LOCUS       NZ_BMPF01000000      3024665 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Halarchaeum grantii strain JCM 19585, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMPF00000000
VERSION     NZ_BMPF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245279
            Assembly: GCF_014647455.2
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum grantii
  ORGANISM  Halarchaeum grantii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3024665)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMPF00000000.1.
            
            On Oct 31, 2020 this sequence version replaced gi:1906108953.
            The Halarchaeum grantii whole genome shotgun (WGS) project has the
            project accession NZ_BMPF00000000.  This version of the project
            (01) has the accession number NZ_BMPF01000000, and consists of
            sequence BMPF01000019.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009037
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 142X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014647455.2-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:16:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,165
            CDSs (total)                      :: 3,114
            Genes (coding)                    :: 3,058
            CDSs (with protein)               :: 3,058
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 26 of 56
            Pseudo Genes (incomplete)         :: 36 of 56
            Pseudo Genes (internal stop)      :: 14 of 56
            Pseudo Genes (multiple problems)  :: 17 of 56
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024665
                     /organism="Halarchaeum grantii"
                     /mol_type="genomic DNA"
                     /strain="JCM 19585"
                     /culture_collection="JCM:19585"
                     /type_material="type strain of Halarchaeum grantii"
                     /db_xref="taxon:1193105"
WGS         BMPF01000001-BMPF01000009
WGS         BMPF01000012
WGS         BMPF01000014
WGS         BMPF01000017
WGS         BMPF01000019
WGS_SCAFLD  NZ_BMPF01000001-NZ_BMPF01000009
WGS_SCAFLD  NZ_BMPF01000012
WGS_SCAFLD  NZ_BMPF01000014
WGS_SCAFLD  NZ_BMPF01000017
WGS_SCAFLD  NZ_BMPF01000019
//
LOCUS       NZ_BMOU01000000      3961411 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Haloarcula pellucida strain JCM 17820, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMOU00000000
VERSION     NZ_BMOU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245267
            Assembly: GCF_014647235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula pellucida
  ORGANISM  Haloarcula pellucida
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3961411)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMOU00000000.1.
            The Haloarcula pellucida whole genome shotgun (WGS) project has the
            project accession NZ_BMOU00000000.  This version of the project
            (01) has the accession number NZ_BMOU01000000, and consists of
            sequences BMOU01000001-BMOU01000044.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009030
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 142X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014647235.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:24:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,133
            CDSs (total)                      :: 4,072
            Genes (coding)                    :: 4,004
            CDSs (with protein)               :: 4,004
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 5, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 5, 6 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 32 of 68
            Pseudo Genes (incomplete)         :: 56 of 68
            Pseudo Genes (internal stop)      :: 5 of 68
            Pseudo Genes (multiple problems)  :: 24 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3961411
                     /organism="Haloarcula pellucida"
                     /mol_type="genomic DNA"
                     /strain="JCM 17820"
                     /culture_collection="JCM:17820"
                     /type_material="type strain of Halomicroarcula pellucida"
                     /db_xref="taxon:1427151"
WGS         BMOU01000001-BMOU01000044
WGS_SCAFLD  NZ_BMOU01000001-NZ_BMOU01000044
//
LOCUS       NZ_BMCI01000000      3878884 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Haloferax sulfurifontis strain CCM 7217, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMCI00000000
VERSION     NZ_BMCI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00244848
            Assembly: GCF_014635105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax sulfurifontis
  ORGANISM  Haloferax sulfurifontis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3878884)
  AUTHORS   Sun,Q. and Sedlacek,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMCI00000000.1.
            The Haloferax sulfurifontis whole genome shotgun (WGS) project has
            the project accession NZ_BMCI00000000.  This version of the project
            (01) has the accession number NZ_BMCI01000000, and consists of
            sequences BMCI01000001-BMCI01000021.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10007209
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: gcType assembly pipeline
            Genome Coverage       :: 140X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014635105.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:18:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,969
            CDSs (total)                      :: 3,906
            Genes (coding)                    :: 3,850
            CDSs (with protein)               :: 3,850
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 24 of 56
            Pseudo Genes (incomplete)         :: 35 of 56
            Pseudo Genes (internal stop)      :: 14 of 56
            Pseudo Genes (multiple problems)  :: 14 of 56
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3878884
                     /organism="Haloferax sulfurifontis"
                     /mol_type="genomic DNA"
                     /strain="CCM 7217"
                     /culture_collection="CCM:7217"
                     /type_material="type strain of Haloferax sulfurifontis"
                     /db_xref="taxon:255616"
WGS         BMCI01000001-BMCI01000021
WGS_SCAFLD  NZ_BMCI01000001-NZ_BMCI01000021
//
LOCUS       NZ_JAHTKV010000000   2466990 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Halobacterium salinarum strain AS2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAHTKV000000000
VERSION     NZ_JAHTKV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20014283
            Assembly: GCF_021503975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2466990)
  AUTHORS   Baati,H.
  TITLE     Genomic analysis of heavy metal resistant Halobacterium salinarum
            isolated from Sfax solar saltern sediment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2466990)
  AUTHORS   Baati,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2021) Biology, National Engineering School in
            Sfax, Research Unit: Coastal and Urban Environments, Sokra, Sfax
            3038, Tunisia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHTKV000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAHTKV000000000.  This version of the
            project (01) has the accession number NZ_JAHTKV010000000, and
            consists of sequences JAHTKV010000001-JAHTKV010000192.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JAN-2020
            Assembly Method        :: CLC Genomics Workbench v. 20.0 -
                                      2020-01-01
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 109.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021503975.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:21:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,740
            CDSs (total)                      :: 2,690
            Genes (coding)                    :: 2,552
            CDSs (with protein)               :: 2,552
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 24 of 138
            Pseudo Genes (incomplete)         :: 127 of 138
            Pseudo Genes (internal stop)      :: 10 of 138
            Pseudo Genes (multiple problems)  :: 20 of 138
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466990
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="AS2"
                     /isolation_source="solar saltern sediment"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Tunisia: Sfax"
                     /lat_lon="34.65 N 10.7 E"
                     /collection_date="2017-05"
WGS         JAHTKV010000001-JAHTKV010000192
WGS_SCAFLD  NZ_JAHTKV010000001-NZ_JAHTKV010000192
//
LOCUS       NZ_RKLT01000000      5195189 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Haloarcula nitratireducens strain F27, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RKLT00000000
VERSION     NZ_RKLT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10397890
            Assembly: GCF_019599505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula nitratireducens
  ORGANISM  Haloarcula nitratireducens
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 5195189)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halomicroarcula sp. a new haloarchaeum isolated from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5195189)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2021) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKLT00000000.1.
            The Haloarcula nitratireducens whole genome shotgun (WGS) project
            has the project accession NZ_RKLT00000000.  This version of the
            project (01) has the accession number NZ_RKLT01000000, and consists
            of sequences RKLT01000001-RKLT01000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 466.707x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019599505.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:30:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,322
            CDSs (total)                      :: 5,268
            Genes (coding)                    :: 5,129
            CDSs (with protein)               :: 5,129
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 3 (5S, 16S)
            partial rRNAs                     :: 3, 3 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 44 of 139
            Pseudo Genes (incomplete)         :: 110 of 139
            Pseudo Genes (internal stop)      :: 33 of 139
            Pseudo Genes (multiple problems)  :: 41 of 139
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5195189
                     /organism="Haloarcula nitratireducens"
                     /mol_type="genomic DNA"
                     /strain="F27"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halomicroarcula
                     nitratireducens"
                     /db_xref="taxon:2487749"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2014-09"
WGS         RKLT01000001-RKLT01000064
WGS_SCAFLD  NZ_RKLT01000001-NZ_RKLT01000064
//
LOCUS       NZ_RKLR01000000      4667063 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Haloarcula rubra strain F13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RKLR00000000
VERSION     NZ_RKLR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10397844
            Assembly: GCF_019599465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula rubra
  ORGANISM  Haloarcula rubra
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4667063)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halomicroarcula sp. a new haloarchaeum isolated from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4667063)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2021) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKLR00000000.1.
            The Haloarcula rubra whole genome shotgun (WGS) project has the
            project accession NZ_RKLR00000000.  This version of the project
            (01) has the accession number NZ_RKLR01000000, and consists of
            sequences RKLR01000001-RKLR01000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 398.975x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019599465.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:29:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,861
            CDSs (total)                      :: 4,805
            Genes (coding)                    :: 4,716
            CDSs (with protein)               :: 4,716
            Genes (RNA)                       :: 56
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3, 2 (5S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 28 of 89
            Pseudo Genes (incomplete)         :: 71 of 89
            Pseudo Genes (internal stop)      :: 11 of 89
            Pseudo Genes (multiple problems)  :: 18 of 89
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4667063
                     /organism="Haloarcula rubra"
                     /mol_type="genomic DNA"
                     /strain="F13"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halomicroarcula rubra"
                     /db_xref="taxon:2487747"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2014-09"
WGS         RKLR01000001-RKLR01000037
WGS_SCAFLD  NZ_RKLR01000001-NZ_RKLR01000037
//
LOCUS       NZ_RKLQ01000000      4026962 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Haloarcula salinisoli strain F24A, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RKLQ00000000
VERSION     NZ_RKLQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10397798
            Assembly: GCF_019599405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula salinisoli
  ORGANISM  Haloarcula salinisoli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4026962)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halomicroarcula sp. F24A a new haloarchaeum isolated from saline
            soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4026962)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2021) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKLQ00000000.1.
            The Haloarcula salinisoli whole genome shotgun (WGS) project has
            the project accession NZ_RKLQ00000000.  This version of the project
            (01) has the accession number NZ_RKLQ01000000, and consists of
            sequences RKLQ01000001-RKLQ01000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Dr. Antonio Ventosa.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 423.793x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019599405.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:24:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,176
            CDSs (total)                      :: 4,121
            Genes (coding)                    :: 4,071
            CDSs (with protein)               :: 4,071
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 17 of 50
            Pseudo Genes (incomplete)         :: 35 of 50
            Pseudo Genes (internal stop)      :: 8 of 50
            Pseudo Genes (multiple problems)  :: 9 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4026962
                     /organism="Haloarcula salinisoli"
                     /mol_type="genomic DNA"
                     /strain="F24A"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halomicroarcula salinisoli"
                     /db_xref="taxon:2487746"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2014-09"
WGS         RKLQ01000001-RKLQ01000010
WGS_SCAFLD  NZ_RKLQ01000001-NZ_RKLQ01000010
//
LOCUS       NZ_CAKZKF010000000   2924720 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Haloquadratum walsbyi isolate
            ERR2683643_bin.15_CONCOCT_v1.1_MAG, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAKZKF000000000
VERSION     NZ_CAKZKF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13959180
            Sequence Read Archive: ERR2683643
            Assembly: GCF_937121375.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Haloquadratum walsbyi (aquatic metagenome)
  ORGANISM  Haloquadratum walsbyi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloquadratum.
REFERENCE   1  (bases 1 to 2924720)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKZKF000000000.1.
            The Haloquadratum walsbyi whole genome shotgun (WGS) project has
            the project accession NZ_CAKZKF000000000.  This version of the
            project (01) has the accession number NZ_CAKZKF010000000, and
            consists of sequences CAKZKF010000001-CAKZKF010000474.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135664.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run ERR2683643.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937121375.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:37:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,728
            CDSs (total)                      :: 2,688
            Genes (coding)                    :: 2,541
            CDSs (with protein)               :: 2,541
            Genes (RNA)                       :: 40
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 35 of 147
            Pseudo Genes (incomplete)         :: 127 of 147
            Pseudo Genes (internal stop)      :: 30 of 147
            Pseudo Genes (multiple problems)  :: 34 of 147
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2924720
                     /organism="Haloquadratum walsbyi"
                     /mol_type="genomic DNA"
                     /isolate="ERR2683643_bin.15_CONCOCT_v1.1_MAG"
                     /isolation_source="aquatic metagenome"
                     /db_xref="taxon:293091"
                     /environmental_sample
                     /metagenome_source="aquatic metagenome"
                     /metagenomic
WGS         CAKZKF010000001-CAKZKF010000474
WGS_SCAFLD  NZ_CAKZKF010000001-NZ_CAKZKF010000474
//
LOCUS       NZ_JAQLUE010000000   3949706 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain AMM034, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUE000000000
VERSION     NZ_JAQLUE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798466
            Assembly: GCF_028211095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3949706)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3949706)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUE000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUE000000000.  This version of the
            project (01) has the accession number NZ_JAQLUE010000000, and
            consists of sequences JAQLUE010000001-JAQLUE010000375.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211095.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:40:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,178
            CDSs (total)                      :: 4,109
            Genes (coding)                    :: 3,808
            CDSs (with protein)               :: 3,808
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 301
            CDSs (without protein)            :: 301
            Pseudo Genes (ambiguous residues) :: 0 of 301
            Pseudo Genes (frameshifted)       :: 46 of 301
            Pseudo Genes (incomplete)         :: 258 of 301
            Pseudo Genes (internal stop)      :: 40 of 301
            Pseudo Genes (multiple problems)  :: 39 of 301
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3949706
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM034"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUE010000001-JAQLUE010000375
WGS_SCAFLD  NZ_JAQLUE010000001-NZ_JAQLUE010000375
//
LOCUS       NZ_JAQMRS010000000   3457554 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_39, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRS000000000
VERSION     NZ_JAQMRS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800015
            Assembly: GCF_028329905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3457554)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3457554)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRS000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRS000000000.  This version of the
            project (01) has the accession number NZ_JAQMRS010000000, and
            consists of sequences JAQMRS010000001-JAQMRS010000021.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028329905.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:43:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,482
            CDSs (total)                      :: 3,430
            Genes (coding)                    :: 3,334
            CDSs (with protein)               :: 3,334
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 39 of 96
            Pseudo Genes (incomplete)         :: 67 of 96
            Pseudo Genes (internal stop)      :: 25 of 96
            Pseudo Genes (multiple problems)  :: 29 of 96
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3457554
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_39"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRS010000001-JAQMRS010000021
WGS_SCAFLD  NZ_JAQMRS010000001-NZ_JAQMRS010000021
//
LOCUS       NZ_JAQLTW010000000   3695056 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain AMM088, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLTW000000000
VERSION     NZ_JAQLTW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798474
            Assembly: GCF_028211295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3695056)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3695056)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLTW000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLTW000000000.  This version of the
            project (01) has the accession number NZ_JAQLTW010000000, and
            consists of sequences JAQLTW010000001-JAQLTW010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211295.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:49:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,728
            CDSs (total)                      :: 3,660
            Genes (coding)                    :: 3,529
            CDSs (with protein)               :: 3,529
            Genes (RNA)                       :: 68
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 32 of 131
            Pseudo Genes (incomplete)         :: 104 of 131
            Pseudo Genes (internal stop)      :: 30 of 131
            Pseudo Genes (multiple problems)  :: 30 of 131
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695056
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM088"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLTW010000001-JAQLTW010000072
WGS_SCAFLD  NZ_JAQLTW010000001-NZ_JAQLTW010000072
//
LOCUS       NZ_JABBYL010000000   2372968 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Methanobacterium subterraneum isolate HO_2020, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABBYL000000000
VERSION     NZ_JABBYL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14610208
            Assembly: GCF_012933645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium subterraneum
  ORGANISM  Methanobacterium subterraneum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2372968)
  AUTHORS   Ouboter,H.T., Berger,S., Gungor,E., Jetten,M.S.M. and Welte,C.U.
  TITLE     Draft genome of Methanobacterium subterraneum isolated from animal
            feces
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2372968)
  AUTHORS   Ouboter,H.T., Berger,S., Gungor,E., Jetten,M.S.M. and Welte,C.U.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2020) Microbiology, Radboud University,
            Heyendaalseweg 135, Nijmegen 6525AJ, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABBYL000000000.1.
            The Methanobacterium subterraneum whole genome shotgun (WGS)
            project has the project accession NZ_JABBYL000000000.  This version
            of the project (01) has the accession number NZ_JABBYL010000000,
            and consists of sequences JABBYL010000001-JABBYL010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Cornelia Welte.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomics v. 20
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 41.36x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012933645.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:10:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,367
            CDSs (total)                      :: 2,319
            Genes (coding)                    :: 2,308
            CDSs (with protein)               :: 2,308
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 4 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 2 of 11
            Pseudo Genes (multiple problems)  :: 3 of 11
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372968
                     /organism="Methanobacterium subterraneum"
                     /mol_type="genomic DNA"
                     /isolate="HO_2020"
                     /isolation_source="enriched culture from deer feces"
                     /db_xref="taxon:59277"
                     /geo_loc_name="Netherlands"
                     /lat_lon="51.846842 N 5.857168 E"
                     /collection_date="2016-08-16"
WGS         JABBYL010000001-JABBYL010000040
WGS_SCAFLD  NZ_JABBYL010000001-NZ_JABBYL010000040
//
LOCUS       NZ_JALEXY010000000   1877946 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanobrevibacter boviskoreani isolate SUG437, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JALEXY000000000
VERSION     NZ_JALEXY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26525661
            Assembly: GCF_022779995.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter boviskoreani (pig gut metagenome)
  ORGANISM  Methanobrevibacter boviskoreani
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1877946)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Metagenome-assembled genomes from swine fecal metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1877946)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2022) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALEXY000000000.1.
            The Methanobrevibacter boviskoreani whole genome shotgun (WGS)
            project has the project accession NZ_JALEXY000000000.  This version
            of the project (01) has the accession number NZ_JALEXY010000000,
            and consists of sequences JALEXY010000001-JALEXY010000061.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2021
            Assembly Method        :: MEGAHIT v. v. 1.29.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.6x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022779995.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:27:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,682
            CDSs (total)                      :: 1,647
            Genes (coding)                    :: 1,627
            CDSs (with protein)               :: 1,627
            Genes (RNA)                       :: 35
            rRNAs                             :: 1 (16S)
            complete rRNAs                    :: 1 (16S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 3 of 20
            Pseudo Genes (incomplete)         :: 16 of 20
            Pseudo Genes (internal stop)      :: 1 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877946
                     /organism="Methanobrevibacter boviskoreani"
                     /mol_type="genomic DNA"
                     /isolate="SUG437"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1348249"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2019"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JALEXY010000001-JALEXY010000061
WGS_SCAFLD  NZ_JALEXY010000001-NZ_JALEXY010000061
//
LOCUS       NZ_JALFEN010000000   2043482 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanobrevibacter boviskoreani isolate SUG608, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JALFEN000000000
VERSION     NZ_JALFEN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26525832
            Assembly: GCF_022777885.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter boviskoreani (pig gut metagenome)
  ORGANISM  Methanobrevibacter boviskoreani
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2043482)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Metagenome-assembled genomes from swine fecal metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2043482)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2022) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALFEN000000000.1.
            The Methanobrevibacter boviskoreani whole genome shotgun (WGS)
            project has the project accession NZ_JALFEN000000000.  This version
            of the project (01) has the accession number NZ_JALFEN010000000,
            and consists of sequences JALFEN010000001-JALFEN010000162.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2021
            Assembly Method        :: MEGAHIT v. v. 1.29.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 8x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022777885.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:29:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,952
            CDSs (total)                      :: 1,908
            Genes (coding)                    :: 1,864
            CDSs (with protein)               :: 1,864
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 4 of 44
            Pseudo Genes (incomplete)         :: 37 of 44
            Pseudo Genes (internal stop)      :: 5 of 44
            Pseudo Genes (multiple problems)  :: 2 of 44
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043482
                     /organism="Methanobrevibacter boviskoreani"
                     /mol_type="genomic DNA"
                     /isolate="SUG608"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1348249"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2019"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JALFEN010000001-JALFEN010000162
WGS_SCAFLD  NZ_JALFEN010000001-NZ_JALFEN010000162
//
LOCUS       NZ_WUYX01000000      4556507 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Natronorubrum halalkaliphilum strain JWXQ-INN-674, whole genome
            shotgun sequencing project.
ACCESSION   NZ_WUYX00000000
VERSION     NZ_WUYX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13632791
            Assembly: GCF_009834785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum halalkaliphilum
  ORGANISM  Natronorubrum halalkaliphilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4556507)
  AUTHORS   Xue,Q.
  TITLE     Natronorubrum sp. JWXQ-INN 674 isolated from Inner Mongolia
            Autonomous Region of China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4556507)
  AUTHORS   Xue,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JAN-2020) The Institute of Microbiology, Chinese
            Academy of Science, Beichen Xilu, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WUYX00000000.1.
            The Natronorubrum halalkaliphilum whole genome shotgun (WGS)
            project has the project accession NZ_WUYX00000000.  This version of
            the project (01) has the accession number NZ_WUYX01000000, and
            consists of sequences WUYX01000001-WUYX01000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 310.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009834785.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:29:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,425
            CDSs (total)                      :: 4,371
            Genes (coding)                    :: 4,275
            CDSs (with protein)               :: 4,275
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 36 of 96
            Pseudo Genes (incomplete)         :: 72 of 96
            Pseudo Genes (internal stop)      :: 17 of 96
            Pseudo Genes (multiple problems)  :: 24 of 96
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4556507
                     /organism="Natronorubrum halalkaliphilum"
                     /mol_type="genomic DNA"
                     /strain="JWXQ-INN-674"
                     /isolation_source="soda lake"
                     /type_material="type strain of Natronorubrum
                     halalkaliphilum"
                     /db_xref="taxon:2691917"
                     /geo_loc_name="China: Inner mongolia"
                     /collection_date="2017-04-27"
WGS         WUYX01000001-WUYX01000073
WGS_SCAFLD  NZ_WUYX01000001-NZ_WUYX01000073
//
LOCUS       NZ_JAPTGC010000000   1942183 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Methanocorpusculum vombati strain CW153, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPTGC000000000
VERSION     NZ_JAPTGC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32012125
            Assembly: GCF_026891935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocorpusculum vombati
  ORGANISM  Methanocorpusculum vombati
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanocorpusculum.
REFERENCE   1  (bases 1 to 1942183)
  AUTHORS   Volmer,J.G., Soo,R.M., Evans,P.N., Hoedt,E.C., Astorga Alsina,A.L.,
            Woodcroft,B.J., Tyson,G.W., Hugenholtz,P. and Morrison,M.
  TITLE     Isolation and characterisation of novel Methanocorpusculum spp.
            from native Australian herbivores indicates the genus is
            ancestrally host-associated
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1942183)
  AUTHORS   Volmer,J.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2022) Diamantina Institute, University of
            Queensland, Kent Street, Brisbane, Queensland 4102, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPTGC000000000.1.
            The Methanocorpusculum vombati whole genome shotgun (WGS) project
            has the project accession NZ_JAPTGC000000000.  This version of the
            project (01) has the accession number NZ_JAPTGC010000000, and
            consists of sequences JAPTGC010000001-JAPTGC010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Morrison Lab, University of
            Queensland.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: SPAdes v. v3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 177.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026891935.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:30:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,002
            CDSs (total)                      :: 1,945
            Genes (coding)                    :: 1,935
            CDSs (with protein)               :: 1,935
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 3 of 10
            Pseudo Genes (incomplete)         :: 7 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942183
                     /organism="Methanocorpusculum vombati"
                     /mol_type="genomic DNA"
                     /strain="CW153"
                     /isolation_source="fecal sample"
                     /host="Vombatus ursinus"
                     /type_material="type strain of Methanocorpusculum vombati"
                     /db_xref="taxon:3002864"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JAPTGC010000001-JAPTGC010000044
WGS_SCAFLD  NZ_JAPTGC010000001-NZ_JAPTGC010000044
//
LOCUS       NZ_JALKIF010000000   2359936 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Methanobacterium alcaliphilum strain DSM 3459, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALKIF000000000
VERSION     NZ_JALKIF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27398541
            Assembly: GCF_023227715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium alcaliphilum
  ORGANISM  Methanobacterium alcaliphilum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2359936)
  AUTHORS   Postec,A. and Quemeneur,M.
  TITLE     Description of Methanobacterium strain CAN
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2359936)
  AUTHORS   Postec,A. and Quemeneur,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2022) Microbiologie Environnementale et
            Biotechnologie (MEB), Mediterranean Institute of Oceanography
            (MIO), UMR 7294, 163 avenue de Luminy, Marseille 13288, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKIF000000000.1.
            The Methanobacterium alcaliphilum whole genome shotgun (WGS)
            project has the project accession NZ_JALKIF000000000.  This version
            of the project (01) has the accession number NZ_JALKIF010000000,
            and consists of sequences JALKIF010000001-JALKIF010000065.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from MIO, Marseille, France.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. May-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023227715.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:29:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,367
            CDSs (total)                      :: 2,321
            Genes (coding)                    :: 2,309
            CDSs (with protein)               :: 2,309
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 3 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 2 of 12
            Pseudo Genes (incomplete)         :: 9 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359936
                     /organism="Methanobacterium alcaliphilum"
                     /mol_type="genomic DNA"
                     /strain="DSM 3459"
                     /isolation_source="high-pH lake sediment"
                     /culture_collection="DSM:3459"
                     /db_xref="taxon:392018"
                     /geo_loc_name="Egypt: Wadi el Natrun"
WGS         JALKIF010000001-JALKIF010000065
WGS_SCAFLD  NZ_JALKIF010000001-NZ_JALKIF010000065
//
LOCUS       NZ_JAPTGB010000000   2026067 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Methanocorpusculum petauri strain MG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPTGB000000000
VERSION     NZ_JAPTGB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32012124
            Assembly: GCF_026891975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocorpusculum petauri
  ORGANISM  Methanocorpusculum petauri
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae;
            Methanocorpusculum.
REFERENCE   1  (bases 1 to 2026067)
  AUTHORS   Volmer,J.G., Soo,R.M., Evans,P.N., Hoedt,E.C., Astorga Alsina,A.L.,
            Woodcroft,B.J., Tyson,G.W., Hugenholtz,P. and Morrison,M.
  TITLE     Isolation and characterisation of novel Methanocorpusculum spp.
            from native Australian herbivores indicates the genus is
            ancestrally host-associated
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2026067)
  AUTHORS   Volmer,J.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2022) Diamantina Institute, University of
            Queensland, Kent Street, Brisbane, Queensland 4102, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPTGB000000000.1.
            The Methanocorpusculum petauri whole genome shotgun (WGS) project
            has the project accession NZ_JAPTGB000000000.  This version of the
            project (01) has the accession number NZ_JAPTGB010000000, and
            consists of sequences JAPTGB010000001-JAPTGB010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Morrison Lab, University of
            Queensland.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. v3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 199.46x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026891975.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:29:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,103
            CDSs (total)                      :: 2,046
            Genes (coding)                    :: 2,041
            CDSs (with protein)               :: 2,041
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 5 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026067
                     /organism="Methanocorpusculum petauri"
                     /mol_type="genomic DNA"
                     /strain="MG"
                     /isolation_source="fecal sample"
                     /host="Petaurus gracilis"
                     /type_material="type strain of Methanocorpusculum petauri"
                     /db_xref="taxon:3002863"
                     /geo_loc_name="Australia"
                     /collection_date="2020"
WGS         JAPTGB010000001-JAPTGB010000059
WGS_SCAFLD  NZ_JAPTGB010000001-NZ_JAPTGB010000059
//
LOCUS       NZ_CALCVY010000000   2393109 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanobacterium formicicum isolate
            SRR1562007_bin.168_CONCOCT_v1.1_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CALCVY000000000
VERSION     NZ_CALCVY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14037491
            Sequence Read Archive: SRR1562007
            Assembly: GCF_937905965.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobacterium formicicum (food production metagenome)
  ORGANISM  Methanobacterium formicicum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2393109)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALCVY000000000.1.
            The Methanobacterium formicicum whole genome shotgun (WGS) project
            has the project accession NZ_CALCVY000000000.  This version of the
            project (01) has the accession number NZ_CALCVY010000000, and
            consists of sequences CALCVY010000001-CALCVY010000291.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135666.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR1562007.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_937905965.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:31:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,468
            CDSs (total)                      :: 2,442
            Genes (coding)                    :: 2,381
            CDSs (with protein)               :: 2,381
            Genes (RNA)                       :: 26
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 24
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 3 of 61
            Pseudo Genes (incomplete)         :: 57 of 61
            Pseudo Genes (internal stop)      :: 1 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393109
                     /organism="Methanobacterium formicicum"
                     /mol_type="genomic DNA"
                     /isolate="SRR1562007_bin.168_CONCOCT_v1.1_MAG"
                     /isolation_source="food production metagenome"
                     /db_xref="taxon:2162"
                     /environmental_sample
                     /metagenome_source="food production metagenome"
                     /metagenomic
WGS         CALCVY010000001-CALCVY010000291
WGS_SCAFLD  NZ_CALCVY010000001-NZ_CALCVY010000291
//
LOCUS       NZ_CAMLVV010000000   1556603 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanobrevibacter woesei isolate
            ERR4336989_bin.74_MetaWRAP_v1.1_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAMLVV000000000
VERSION     NZ_CAMLVV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA110702543
            Sequence Read Archive: ERR4336989
            Assembly: GCF_946488595.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter woesei (chicken gut metagenome)
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1556603)
  AUTHORS   Baldi,G., Alberdi,A., Li,S., Kale,V. and Richardson,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2022) UNIVERSITY OF COPENHAGEN, Oester
            Farimagsgade 5, Building 7, 1353 Copenhagen, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMLVV000000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_CAMLVV000000000.  This version of the
            project (01) has the accession number NZ_CAMLVV010000000, and
            consists of sequences CAMLVV010000001-CAMLVV010000017.
            This is an EMG-produced bin derived from the primary whole genome
            shotgun (WGS) data set ERP140263. This sample represents a
            Metagenome-Assembled Genome (MAG) from the metagenomic run
            ERR4336989.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_946488595.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:36:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,659
            CDSs (total)                      :: 1,623
            Genes (coding)                    :: 1,616
            CDSs (with protein)               :: 1,616
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 5 of 7
            Pseudo Genes (internal stop)      :: 0 of 7
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556603
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /isolate="ERR4336989_bin.74_MetaWRAP_v1.1_MAG"
                     /isolation_source="chicken gut metagenome"
                     /db_xref="taxon:190976"
                     /environmental_sample
                     /metagenome_source="chicken gut metagenome"
                     /metagenomic
WGS         CAMLVV010000001-CAMLVV010000017
WGS_SCAFLD  NZ_CAMLVV010000001-NZ_CAMLVV010000017
//
LOCUS       NZ_JTEO01000000      2593453 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Methanolobus chelungpuianus strain St545Mb, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JTEO00000000
VERSION     NZ_JTEO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03196696
            Assembly: GCF_024500045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanolobus chelungpuianus
  ORGANISM  Methanolobus chelungpuianus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanolobus.
REFERENCE   1  (bases 1 to 2593453)
  AUTHORS   Wu,S.Y. and Lai,M.C.
  TITLE     Methanogenic archaea isolated from Taiwan's Chelungpu fault
  JOURNAL   Appl Environ Microbiol 77 (3), 830-838 (2011)
   PUBMED   21148697
REFERENCE   2  (bases 1 to 2593453)
  AUTHORS   Chen,S.-C., Wu,S.-Y. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2014) Department of Life Sciences, National Chung
            Hsing University, 250 Kuo Kuang Rd, Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JTEO00000000.1.
            The Methanolobus chelungpuianus whole genome shotgun (WGS) project
            has the project accession NZ_JTEO00000000.  This version of the
            project (01) has the accession number NZ_JTEO01000000, and consists
            of sequences JTEO01000001-JTEO01000071.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLCbio v. Aug-2012
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024500045.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:33:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,580
            CDSs (total)                      :: 2,523
            Genes (coding)                    :: 2,503
            CDSs (with protein)               :: 2,503
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 5 of 20
            Pseudo Genes (incomplete)         :: 14 of 20
            Pseudo Genes (internal stop)      :: 7 of 20
            Pseudo Genes (multiple problems)  :: 5 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593453
                     /organism="Methanolobus chelungpuianus"
                     /mol_type="genomic DNA"
                     /strain="St545Mb"
                     /isolation_source="a sandstone sample at 545 m below land
                     surface"
                     /type_material="type strain of Methanolobus
                     chelungpuianus"
                     /db_xref="taxon:502115"
                     /geo_loc_name="Taiwan: Chelungpu fault"
                     /collection_date="2004-07"
                     /identified_by="Sue-Yao Wu and Mei-Chin Lai"
WGS         JTEO01000001-JTEO01000071
WGS_SCAFLD  NZ_JTEO01000001-NZ_JTEO01000071
//
LOCUS       NZ_CAUHHK010000000   1700147 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanosphaera stadtmanae isolate
            SRR16280027_bin.26_MetaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAUHHK000000000
VERSION     NZ_CAUHHK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114122356
            Sequence Read Archive: SRR16280027
            Assembly: GCF_959606055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosphaera stadtmanae (human feces metagenome)
  ORGANISM  Methanosphaera stadtmanae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1700147)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2023) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAUHHK000000000.1.
            The Methanosphaera stadtmanae whole genome shotgun (WGS) project
            has the project accession NZ_CAUHHK000000000.  This version of the
            project (01) has the accession number NZ_CAUHHK010000000, and
            consists of sequences CAUHHK010000001-CAUHHK010000048.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set SRP340671.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR16280027.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_959606055.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:31:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,616
            CDSs (total)                      :: 1,575
            Genes (coding)                    :: 1,566
            CDSs (with protein)               :: 1,566
            Genes (RNA)                       :: 41
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 1 of 9
            Pseudo Genes (incomplete)         :: 9 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            Pseudo Genes (multiple problems)  :: 1 of 9
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700147
                     /organism="Methanosphaera stadtmanae"
                     /mol_type="genomic DNA"
                     /isolate="SRR16280027_bin.26_MetaWRAP_v1.3_MAG"
                     /isolation_source="human feces metagenome"
                     /db_xref="taxon:2317"
                     /environmental_sample
                     /metagenome_source="human feces metagenome"
                     /metagenomic
WGS         CAUHHK010000001-CAUHHK010000048
WGS_SCAFLD  NZ_CAUHHK010000001-NZ_CAUHHK010000048
//
LOCUS       NZ_CAUHNE010000000   1478097 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanobrevibacter woesei isolate
            SRR16280071_bin.9_MetaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAUHNE000000000
VERSION     NZ_CAUHNE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114122598
            Sequence Read Archive: SRR16280071
            Assembly: GCF_959607655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter woesei (human feces metagenome)
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1478097)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2023) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAUHNE000000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_CAUHNE000000000.  This version of the
            project (01) has the accession number NZ_CAUHNE010000000, and
            consists of sequences CAUHNE010000001-CAUHNE010000078.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set SRP340671.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR16280071.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_959607655.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:37:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,595
            CDSs (total)                      :: 1,567
            Genes (coding)                    :: 1,528
            CDSs (with protein)               :: 1,528
            Genes (RNA)                       :: 28
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            tRNAs                             :: 24
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 9 of 39
            Pseudo Genes (incomplete)         :: 26 of 39
            Pseudo Genes (internal stop)      :: 5 of 39
            Pseudo Genes (multiple problems)  :: 1 of 39
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1478097
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /isolate="SRR16280071_bin.9_MetaWRAP_v1.3_MAG"
                     /isolation_source="human feces metagenome"
                     /db_xref="taxon:190976"
                     /environmental_sample
                     /metagenome_source="human feces metagenome"
                     /metagenomic
WGS         CAUHNE010000001-CAUHNE010000078
WGS_SCAFLD  NZ_CAUHNE010000001-NZ_CAUHNE010000078
//
LOCUS       NZ_CATZXA010000000   1560808 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanosphaera stadtmanae isolate
            ERR9762684_bin.23_MetaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CATZXA000000000
VERSION     NZ_CATZXA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114064200
            Sequence Read Archive: ERR9762684
            Assembly: GCF_958425675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosphaera stadtmanae (human feces metagenome)
  ORGANISM  Methanosphaera stadtmanae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1560808)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2023) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CATZXA000000000.1.
            The Methanosphaera stadtmanae whole genome shotgun (WGS) project
            has the project accession NZ_CATZXA000000000.  This version of the
            project (01) has the accession number NZ_CATZXA010000000, and
            consists of sequences CATZXA010000001-CATZXA010000203.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP137678.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run ERR9762684.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_958425675.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:34:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,552
            CDSs (total)                      :: 1,518
            Genes (coding)                    :: 1,476
            CDSs (with protein)               :: 1,476
            Genes (RNA)                       :: 34
            tRNAs                             :: 33
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 3 of 42
            Pseudo Genes (incomplete)         :: 36 of 42
            Pseudo Genes (internal stop)      :: 3 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560808
                     /organism="Methanosphaera stadtmanae"
                     /mol_type="genomic DNA"
                     /isolate="ERR9762684_bin.23_MetaWRAP_v1.3_MAG"
                     /isolation_source="human feces metagenome"
                     /db_xref="taxon:2317"
                     /environmental_sample
                     /metagenome_source="human feces metagenome"
                     /metagenomic
WGS         CATZXA010000001-CATZXA010000203
WGS_SCAFLD  NZ_CATZXA010000001-NZ_CATZXA010000203
//
LOCUS       NZ_CALIUN010000000   1624492 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanobrevibacter woesei isolate
            ERR1018268_bin.70_CONCOCT_v1.1_MAG, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CALIUN000000000
VERSION     NZ_CALIUN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14083312
            Sequence Read Archive: ERR1018268
            Assembly: GCF_938048705.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter woesei (human gut metagenome)
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1624492)
  AUTHORS   Saary,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) EBI, Finn, EMBL-EBI, Wellcome Genome
            Campus, Hinxton, Cambridgeshire, CB10 1SD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CALIUN000000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_CALIUN000000000.  This version of the
            project (01) has the accession number NZ_CALIUN010000000, and
            consists of sequences CALIUN010000001-CALIUN010000013.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP135668.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run ERR1018268.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_938048705.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:35:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,650
            CDSs (total)                      :: 1,613
            Genes (coding)                    :: 1,604
            CDSs (with protein)               :: 1,604
            Genes (RNA)                       :: 37
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 3 of 9
            Pseudo Genes (incomplete)         :: 6 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624492
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /isolate="ERR1018268_bin.70_CONCOCT_v1.1_MAG"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:190976"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CALIUN010000001-CALIUN010000013
WGS_SCAFLD  NZ_CALIUN010000001-NZ_CALIUN010000013
//
LOCUS       NZ_JAVEPU010000000   2446556 bp    DNA     linear   ENV 03-MAY-2025
DEFINITION  MAG: Methanothrix soehngenii isolate BF_dRep_10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAVEPU000000000
VERSION     NZ_JAVEPU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36910835
            Assembly: GCF_034007965.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix soehngenii (landfill metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2446556)
  AUTHORS   Johnson,L.A., George,N.A. and Hug,L.A.
  TITLE     Life in black goo: identification of functional targets to reduce
            landfill infrastructure biofouling
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2446556)
  AUTHORS   Johnson,L.A., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVEPU000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_JAVEPU000000000.  This version of the
            project (01) has the accession number NZ_JAVEPU010000000, and
            consists of sequences JAVEPU010000001-JAVEPU010000253.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 122.773852241477x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034007965.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 13:03:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,638
            CDSs (total)                      :: 2,594
            Genes (coding)                    :: 2,533
            CDSs (with protein)               :: 2,533
            Genes (RNA)                       :: 44
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 6 of 61
            Pseudo Genes (incomplete)         :: 58 of 61
            Pseudo Genes (internal stop)      :: 1 of 61
            Pseudo Genes (multiple problems)  :: 4 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446556
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="BF_dRep_10"
                     /isolation_source="Biofilm fouling a methane capture
                     system in an active sanitary landfill in Southern Ontario"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="Canada: Ontario"
                     /lat_lon="43.43 N 80.58 W"
                     /collection_date="2017-10"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JAVEPU010000001-JAVEPU010000253
WGS_SCAFLD  NZ_JAVEPU010000001-NZ_JAVEPU010000253
//
LOCUS       NZ_BMNL01000000      1935722 bp    DNA     linear   BCT 03-MAY-2025
DEFINITION  Thermocladium modestius strain JCM 10088, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BMNL00000000
VERSION     NZ_BMNL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245221
            Assembly: GCF_014646535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermocladium modestius
  ORGANISM  Thermocladium modestius
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Thermocladium.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 1935722)
  AUTHORS   Sun,Q. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BMNL00000000.1.
            The Thermocladium modestius whole genome shotgun (WGS) project has
            the project accession NZ_BMNL00000000.  This version of the project
            (01) has the accession number NZ_BMNL01000000, and consists of
            sequences BMNL01000001-BMNL01000058.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10007981
            
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: BGI assembly pipeline
            Genome Coverage       :: 999X
            Sequencing Technology :: Illumina HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014646535.1-RS_2025_05_03
            Annotation Date                   :: 05/03/2025 12:29:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,954
            CDSs (total)                      :: 1,907
            Genes (coding)                    :: 1,888
            CDSs (with protein)               :: 1,888
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 8 of 19
            Pseudo Genes (incomplete)         :: 15 of 19
            Pseudo Genes (internal stop)      :: 3 of 19
            Pseudo Genes (multiple problems)  :: 7 of 19
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935722
                     /organism="Thermocladium modestius"
                     /mol_type="genomic DNA"
                     /strain="JCM 10088"
                     /culture_collection="JCM:10088"
                     /type_material="type strain of Thermocladium modestius"
                     /db_xref="taxon:62609"
WGS         BMNL01000001-BMNL01000058
WGS_SCAFLD  NZ_BMNL01000001-NZ_BMNL01000058
//
LOCUS       NZ_JAOPJZ010000000   4541216 bp    DNA     linear   BCT 04-MAY-2025
DEFINITION  Natronosalvus hydrolyticus strain AArc-curdl1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOPJZ000000000
VERSION     NZ_JAOPJZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30921867
            Assembly: GCF_025517525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronosalvus hydrolyticus
  ORGANISM  Natronosalvus hydrolyticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronosalvus.
REFERENCE   1  (bases 1 to 4541216)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Khizhniak,T.V., Kolganova,T.V. and
            Kublanov,I.V.
  TITLE     Enrichment on poylsaccharides allowed isolation of novel metabolic
            and taxonomic groups of Haloarchaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4541216)
  AUTHORS   Elcheninov,A.G., Kublanov,I.V. and Sorokin,D.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2022) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOPJZ000000000.1.
            The Natronosalvus hydrolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAOPJZ000000000.  This version of the
            project (01) has the accession number NZ_JAOPJZ010000000, and
            consists of sequences JAOPJZ010000001-JAOPJZ010000067.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 265x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025517525.1-RS_2025_05_04
            Annotation Date                   :: 05/04/2025 11:16:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,341
            CDSs (total)                      :: 4,289
            Genes (coding)                    :: 4,188
            CDSs (with protein)               :: 4,188
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 31 of 101
            Pseudo Genes (incomplete)         :: 82 of 101
            Pseudo Genes (internal stop)      :: 28 of 101
            Pseudo Genes (multiple problems)  :: 32 of 101
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4541216
                     /organism="Natronosalvus hydrolyticus"
                     /mol_type="genomic DNA"
                     /strain="AArc-curdl1"
                     /isolation_source="sediment and brine samples obtained
                     from hypersaline lake"
                     /type_material="type strain of Natronosalvus hydrolyticus"
                     /db_xref="taxon:2979988"
                     /geo_loc_name="Russia: Altai Region"
                     /lat_lon="51.65001 N 79.8 E"
                     /collection_date="2017-07"
WGS         JAOPJZ010000001-JAOPJZ010000067
WGS_SCAFLD  NZ_JAOPJZ010000001-NZ_JAOPJZ010000067
//
LOCUS       NZ_JBCEXH010000000   2002724 bp    DNA     linear   BCT 04-MAY-2025
DEFINITION  Methanocalculus natronophilus strain Z-7105, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBCEXH000000000
VERSION     NZ_JBCEXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40528436
            Assembly: GCF_038751955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocalculus natronophilus
  ORGANISM  Methanocalculus natronophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 2002724)
  AUTHORS   Elkassas,S.M., Zhilina,T., Serres,M., Richardson,D. and Huber,J.A.
  TITLE     Draft Genome Sequence of Methanocalculus natronophilus sp. strain
            Z-7105T, an Alkaliphilic, Methanogenic Archaeon Isolated from a
            Soda Lake
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2002724)
  AUTHORS   Elkassas,S.M., Zhilina,T., Serres,M., Richardson,D. and Huber,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-APR-2024) Department of Marine Chemistry and
            Geochemistry, Huber Lab @ WHOI, 266 Woods Hole Road, Woods Hole, MA
            02543, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBCEXH000000000.1.
            The Methanocalculus natronophilus whole genome shotgun (WGS)
            project has the project accession NZ_JBCEXH000000000.  This version
            of the project (01) has the accession number NZ_JBCEXH010000000,
            and consists of sequences JBCEXH010000001-JBCEXH010000143.
            Bacteria and source DNA available from DSM 25006.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAR-2024
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038751955.1-RS_2025_05_04
            Annotation Date                   :: 05/04/2025 11:08:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,202
            CDSs (total)                      :: 2,149
            Genes (coding)                    :: 2,131
            CDSs (with protein)               :: 2,131
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 0 of 18
            Pseudo Genes (incomplete)         :: 16 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002724
                     /organism="Methanocalculus natronophilus"
                     /mol_type="genomic DNA"
                     /strain="Z-7105"
                     /isolation_source="Bottom sediments in the vicinity of
                     Lake Tanatar II"
                     /culture_collection="DSM:25006"
                     /type_material="type strain of Methanocalculus
                     natronophilus"
                     /db_xref="taxon:1262400"
                     /geo_loc_name="Russia: Altai"
                     /collection_date="2013"
                     /collected_by="Tatyana Zhilina, Winogradsky Institute Of
                     Microbiology"
WGS         JBCEXH010000001-JBCEXH010000143
WGS_SCAFLD  NZ_JBCEXH010000001-NZ_JBCEXH010000143
//
LOCUS       NZ_JAERQW010000000   3940152 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Haloferax volcanii strain ID77 - delta_ftsZ2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAERQW000000000
VERSION     NZ_JAERQW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16974887
            Assembly: GCF_018420015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3940152)
  AUTHORS   Liao,Y., Ithurbide,S., Evenhuis,C., Lowe,J. and Duggin,I.G.
  TITLE     Cell division in the archaeon Haloferax volcanii relies on two FtsZ
            proteins with distinct functions in division ring assembly and
            constriction
  JOURNAL   Nat Microbiol 6 (5), 594-605 (2021)
   PUBMED   33903747
REFERENCE   2  (bases 1 to 3940152)
  AUTHORS   Liao,Y., Ithurbide,S., Evenhuis,C., Lowe,J., Duggin,I.G., Liu,M.
            and Anantanawat,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2021) ithree Institute, University of Technology
            Sydney, PO Box 123, Ultimo, NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAERQW000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JAERQW000000000.  This version of the project
            (01) has the accession number NZ_JAERQW010000000, and consists of
            sequences JAERQW010000001-JAERQW010000120.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-JUN-2018
            Assembly Method        :: A5 Assembler v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018420015.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:27:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,048
            CDSs (total)                      :: 3,991
            Genes (coding)                    :: 3,832
            CDSs (with protein)               :: 3,832
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 54 of 159
            Pseudo Genes (incomplete)         :: 106 of 159
            Pseudo Genes (internal stop)      :: 24 of 159
            Pseudo Genes (multiple problems)  :: 20 of 159
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940152
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="ID77 - delta_ftsZ2"
                     /db_xref="taxon:2246"
                     /geo_loc_name="Australia: Sydney"
                     /collection_date="2018-06-04"
                     /collected_by="Yan Liao"
WGS         JAERQW010000001-JAERQW010000120
WGS_SCAFLD  NZ_JAERQW010000001-NZ_JAERQW010000120
//
LOCUS       NZ_JAMZIE010000000   3041226 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halohasta salina strain GSL13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAMZIE000000000
VERSION     NZ_JAMZIE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29428005
            Assembly: GCF_024178165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halohasta salina
  ORGANISM  Halohasta salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halohasta.
REFERENCE   1  (bases 1 to 3041226)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3041226)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMZIE000000000.1.
            The Halohasta salina whole genome shotgun (WGS) project has the
            project accession NZ_JAMZIE000000000.  This version of the project
            (01) has the accession number NZ_JAMZIE010000000, and consists of
            sequences JAMZIE010000001-JAMZIE010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 2013-10
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 310.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024178165.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:34:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,151
            CDSs (total)                      :: 3,095
            Genes (coding)                    :: 3,024
            CDSs (with protein)               :: 3,024
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 19 of 71
            Pseudo Genes (incomplete)         :: 56 of 71
            Pseudo Genes (internal stop)      :: 13 of 71
            Pseudo Genes (multiple problems)  :: 14 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3041226
                     /organism="Halohasta salina"
                     /mol_type="genomic DNA"
                     /strain="GSL13"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halohasta salina"
                     /db_xref="taxon:2961621"
                     /geo_loc_name="China: Xinjiang"
                     /collection_date="2013-10"
WGS         JAMZIE010000001-JAMZIE010000025
WGS_SCAFLD  NZ_JAMZIE010000001-NZ_JAMZIE010000025
//
LOCUS       NZ_JANHAV010000000   3408193 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halobellus inordinatus strain YC20, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHAV000000000
VERSION     NZ_JANHAV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29881933
            Assembly: GCF_024464655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus inordinatus
  ORGANISM  Halobellus inordinatus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3408193)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3408193)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHAV000000000.1.
            The Halobellus inordinatus whole genome shotgun (WGS) project has
            the project accession NZ_JANHAV000000000.  This version of the
            project (01) has the accession number NZ_JANHAV010000000, and
            consists of sequences JANHAV010000001-JANHAV010000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024464655.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:41:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,450
            CDSs (total)                      :: 3,382
            Genes (coding)                    :: 3,323
            CDSs (with protein)               :: 3,323
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 19 of 59
            Pseudo Genes (incomplete)         :: 44 of 59
            Pseudo Genes (internal stop)      :: 6 of 59
            Pseudo Genes (multiple problems)  :: 10 of 59
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3408193
                     /organism="Halobellus inordinatus"
                     /mol_type="genomic DNA"
                     /strain="YC20"
                     /isolation_source="Yuncheng salt lake"
                     /type_material="type strain of Halobellus inordinatus"
                     /db_xref="taxon:1126236"
                     /geo_loc_name="China: Shanxi"
                     /collection_date="2010-06"
WGS         JANHAV010000001-JANHAV010000023
WGS_SCAFLD  NZ_JANHAV010000001-NZ_JANHAV010000023
//
LOCUS       NZ_JANHDN010000000   3444704 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halorubrum rutilum strain YJ-18-S1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHDN000000000
VERSION     NZ_JANHDN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29911664
            Assembly: GCF_024494565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum rutilum
  ORGANISM  Halorubrum rutilum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3444704)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3444704)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDN000000000.1.
            The Halorubrum rutilum whole genome shotgun (WGS) project has the
            project accession NZ_JANHDN000000000.  This version of the project
            (01) has the accession number NZ_JANHDN010000000, and consists of
            sequences JANHDN010000001-JANHDN010000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 154.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024494565.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:40:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,495
            CDSs (total)                      :: 3,439
            Genes (coding)                    :: 3,394
            CDSs (with protein)               :: 3,394
            Genes (RNA)                       :: 56
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 11 of 45
            Pseudo Genes (incomplete)         :: 32 of 45
            Pseudo Genes (internal stop)      :: 8 of 45
            Pseudo Genes (multiple problems)  :: 6 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3444704
                     /organism="Halorubrum rutilum"
                     /mol_type="genomic DNA"
                     /strain="YJ-18-S1"
                     /isolation_source="marine solar saltern"
                     /type_material="type strain of Halorubrum rutilum"
                     /db_xref="taxon:1364933"
                     /geo_loc_name="China: Guangdong, Yangjiang"
                     /collection_date="2012-10"
WGS         JANHDN010000001-JANHDN010000012
WGS_SCAFLD  NZ_JANHDN010000001-NZ_JANHDN010000012
//
LOCUS       NZ_JALIQP010000000   4594540 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halosolutus amylolyticus strain WLHS5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALIQP000000000
VERSION     NZ_JALIQP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27281600
            Assembly: GCF_023566055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosolutus amylolyticus
  ORGANISM  Halosolutus amylolyticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Halosolutus.
REFERENCE   1  (bases 1 to 4594540)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4594540)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALIQP000000000.1.
            The Halosolutus amylolyticus whole genome shotgun (WGS) project has
            the project accession NZ_JALIQP000000000.  This version of the
            project (01) has the accession number NZ_JALIQP010000000, and
            consists of sequences JALIQP010000001-JALIQP010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 280.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023566055.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:36:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,536
            CDSs (total)                      :: 4,478
            Genes (coding)                    :: 4,418
            CDSs (with protein)               :: 4,418
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 26 of 60
            Pseudo Genes (incomplete)         :: 37 of 60
            Pseudo Genes (internal stop)      :: 13 of 60
            Pseudo Genes (multiple problems)  :: 14 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4594540
                     /organism="Halosolutus amylolyticus"
                     /mol_type="genomic DNA"
                     /strain="WLHS5"
                     /isolation_source="salt field sediment"
                     /type_material="type strain of Halosolutus amylolyticus"
                     /db_xref="taxon:2932267"
                     /geo_loc_name="China: Inner Mongolia"
                     /collection_date="2017-10"
WGS         JALIQP010000001-JALIQP010000009
WGS_SCAFLD  NZ_JALIQP010000001-NZ_JALIQP010000009
//
LOCUS       NZ_JANHDJ010000000   3810331 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halohasta litorea strain R30, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHDJ000000000
VERSION     NZ_JANHDJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29911641
            Assembly: GCF_024494645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halohasta litorea
  ORGANISM  Halohasta litorea
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halohasta.
REFERENCE   1  (bases 1 to 3810331)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3810331)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDJ000000000.1.
            The Halohasta litorea whole genome shotgun (WGS) project has the
            project accession NZ_JANHDJ000000000.  This version of the project
            (01) has the accession number NZ_JANHDJ010000000, and consists of
            sequences JANHDJ010000001-JANHDJ010000034.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024494645.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:43:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,954
            CDSs (total)                      :: 3,891
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 54
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 33 of 92
            Pseudo Genes (incomplete)         :: 78 of 92
            Pseudo Genes (internal stop)      :: 16 of 92
            Pseudo Genes (multiple problems)  :: 26 of 92
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3810331
                     /organism="Halohasta litorea"
                     /mol_type="genomic DNA"
                     /strain="R30"
                     /isolation_source="aquaculture farm"
                     /type_material="type strain of Halohasta litorea"
                     /db_xref="taxon:869891"
                     /geo_loc_name="China: Dalian, Liaoning"
                     /collection_date="2009-09"
WGS         JANHDJ010000001-JANHDJ010000034
WGS_SCAFLD  NZ_JANHDJ010000001-NZ_JANHDJ010000034
//
LOCUS       NZ_JAIWPJ010000000   4710114 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Natrinema amylolyticum strain LT61, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIWPJ000000000
VERSION     NZ_JAIWPJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21848853
            Assembly: GCF_020515625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema amylolyticum
  ORGANISM  Natrinema amylolyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4710114)
  AUTHORS   Cui,H.-L.
  TITLE     Natrinema sp. nov., isolated from a saline soil in
            Xinjiang(Cui,H.-L.)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4710114)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2021) School of Food and Biological Engineering,
            Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang,
            Zhenjiang, Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIWPJ000000000.1.
            The Natrinema amylolyticum whole genome shotgun (WGS) project has
            the project accession NZ_JAIWPJ000000000.  This version of the
            project (01) has the accession number NZ_JAIWPJ010000000, and
            consists of sequences JAIWPJ010000001-JAIWPJ010000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 4
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020515625.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:22:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,601
            CDSs (total)                      :: 4,540
            Genes (coding)                    :: 4,466
            CDSs (with protein)               :: 4,466
            Genes (RNA)                       :: 61
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 28 of 74
            Pseudo Genes (incomplete)         :: 57 of 74
            Pseudo Genes (internal stop)      :: 9 of 74
            Pseudo Genes (multiple problems)  :: 18 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4710114
                     /organism="Natrinema amylolyticum"
                     /mol_type="genomic DNA"
                     /strain="LT61"
                     /isolation_source="sediment"
                     /type_material="type strain of Natrinema amylolyticum"
                     /db_xref="taxon:2878679"
                     /geo_loc_name="China: Xinjiang"
                     /collection_date="2013"
WGS         JAIWPJ010000001-JAIWPJ010000011
WGS_SCAFLD  NZ_JAIWPJ010000001-NZ_JAIWPJ010000011
//
LOCUS       NZ_JAQMRN010000000   3499059 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_86, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRN000000000
VERSION     NZ_JAQMRN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800020
            Assembly: GCF_028329985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3499059)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3499059)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRN000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRN000000000.  This version of the
            project (01) has the accession number NZ_JAQMRN010000000, and
            consists of sequences JAQMRN010000001-JAQMRN010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028329985.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:45:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,632
            CDSs (total)                      :: 3,564
            Genes (coding)                    :: 3,452
            CDSs (with protein)               :: 3,452
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 34 of 112
            Pseudo Genes (incomplete)         :: 87 of 112
            Pseudo Genes (internal stop)      :: 14 of 112
            Pseudo Genes (multiple problems)  :: 21 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499059
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_86"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRN010000001-JAQMRN010000042
WGS_SCAFLD  NZ_JAQMRN010000001-NZ_JAQMRN010000042
//
LOCUS       NZ_JAQMRP010000000   3449684 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_68, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRP000000000
VERSION     NZ_JAQMRP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800018
            Assembly: GCF_028329665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3449684)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3449684)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRP000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRP000000000.  This version of the
            project (01) has the accession number NZ_JAQMRP010000000, and
            consists of sequences JAQMRP010000001-JAQMRP010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028329665.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:47:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,536
            CDSs (total)                      :: 3,468
            Genes (coding)                    :: 3,359
            CDSs (with protein)               :: 3,359
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 34 of 109
            Pseudo Genes (incomplete)         :: 84 of 109
            Pseudo Genes (internal stop)      :: 14 of 109
            Pseudo Genes (multiple problems)  :: 21 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449684
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_68"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRP010000001-JAQMRP010000044
WGS_SCAFLD  NZ_JAQMRP010000001-NZ_JAQMRP010000044
//
LOCUS       NZ_JAODIX010000000   3172689 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halorubrum yunnanense strain Q85, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAODIX000000000
VERSION     NZ_JAODIX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30884439
            Assembly: GCF_026586675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum yunnanense
  ORGANISM  Halorubrum yunnanense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3172689)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172689)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAODIX000000000.1.
            The Halorubrum yunnanense whole genome shotgun (WGS) project has
            the project accession NZ_JAODIX000000000.  This version of the
            project (01) has the accession number NZ_JAODIX010000000, and
            consists of sequences JAODIX010000001-JAODIX010000116.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026586675.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:43:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,262
            CDSs (total)                      :: 3,203
            Genes (coding)                    :: 3,065
            CDSs (with protein)               :: 3,065
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 4 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 27 of 138
            Pseudo Genes (incomplete)         :: 110 of 138
            Pseudo Genes (internal stop)      :: 24 of 138
            Pseudo Genes (multiple problems)  :: 22 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172689
                     /organism="Halorubrum yunnanense"
                     /mol_type="genomic DNA"
                     /strain="Q85"
                     /isolation_source="Salt rock"
                     /type_material="type strain of Halorubrum yunnanense"
                     /db_xref="taxon:1526162"
                     /geo_loc_name="China: Yunnan"
                     /collection_date="2013-09"
WGS         JAODIX010000001-JAODIX010000116
WGS_SCAFLD  NZ_JAODIX010000001-NZ_JAODIX010000116
//
LOCUS       NZ_JANHDK010000000   3275907 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Haloplanus ruber strain R35, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHDK000000000
VERSION     NZ_JANHDK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29911661
            Assembly: GCF_024494725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus ruber
  ORGANISM  Haloplanus ruber
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 3275907)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3275907)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDK000000000.1.
            The Haloplanus ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANHDK000000000.  This version of the project
            (01) has the accession number NZ_JANHDK010000000, and consists of
            sequences JANHDK010000001-JANHDK010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 155.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024494725.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:43:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,421
            CDSs (total)                      :: 3,362
            Genes (coding)                    :: 3,299
            CDSs (with protein)               :: 3,299
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 18 of 63
            Pseudo Genes (incomplete)         :: 45 of 63
            Pseudo Genes (internal stop)      :: 14 of 63
            Pseudo Genes (multiple problems)  :: 12 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275907
                     /organism="Haloplanus ruber"
                     /mol_type="genomic DNA"
                     /strain="R35"
                     /isolation_source="aquaculture farm"
                     /type_material="type strain of Haloplanus ruber"
                     /db_xref="taxon:869892"
                     /geo_loc_name="China: Dalian"
                     /collection_date="2009-09"
WGS         JANHDK010000001-JANHDK010000009
WGS_SCAFLD  NZ_JANHDK010000001-NZ_JANHDK010000009
//
LOCUS       NZ_JAKRVX010000000   3260636 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Natronocalculus amylovorans strain AArc-St2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKRVX000000000
VERSION     NZ_JAKRVX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25827067
            Assembly: GCF_023638035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronocalculus amylovorans
  ORGANISM  Natronocalculus amylovorans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Natronocalculus.
REFERENCE   1  (bases 1 to 3260636)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Khizhniak,T.V., Koenen,M.,
            Bale,N.J., Damste,J.S.S. and Kublanov,I.V.
  TITLE     Natronocalculus amylovorans gen. nov., sp. nov., and
            Natranaeroarchaeum aerophilus sp. nov., dominant culturable
            amylolytic natronoarchaea from hypersaline soda lakes in
            southwestern Siberia
  JOURNAL   Syst Appl Microbiol 45 (4), 126336 (2022)
   PUBMED   35644061
REFERENCE   2  (bases 1 to 3260636)
  AUTHORS   Elcheninov,A.G., Sorokin,D.Y. and Kublanov,I.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2022) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKRVX000000000.1.
            The Natronocalculus amylovorans whole genome shotgun (WGS) project
            has the project accession NZ_JAKRVX000000000.  This version of the
            project (01) has the accession number NZ_JAKRVX010000000, and
            consists of sequences JAKRVX010000001-JAKRVX010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Dr. D.Y. Sorokin
            (Laboratory of Ecology and Geochemical Activity of Microorganisms,
            Research Center of Biotechnology RAS).
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: SPAdes v. 3.15.2; Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 485.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023638035.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:43:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,355
            CDSs (total)                      :: 3,307
            Genes (coding)                    :: 3,257
            CDSs (with protein)               :: 3,257
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 13 of 50
            Pseudo Genes (incomplete)         :: 38 of 50
            Pseudo Genes (internal stop)      :: 11 of 50
            Pseudo Genes (multiple problems)  :: 12 of 50
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260636
                     /organism="Natronocalculus amylovorans"
                     /mol_type="genomic DNA"
                     /strain="AArc-St2"
                     /isolation_source="hypersaline soda lake"
                     /type_material="type strain of Natronocalculus
                     amylovorans"
                     /db_xref="taxon:2917812"
                     /geo_loc_name="Russia: Kulunda Steppe, Altai region"
                     /collection_date="2017-07"
WGS         JAKRVX010000001-JAKRVX010000020
WGS_SCAFLD  NZ_JAKRVX010000001-NZ_JAKRVX010000020
//
LOCUS       NZ_JAQMSA010000000   3500200 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_113, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMSA000000000
VERSION     NZ_JAQMSA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800007
            Assembly: GCF_028330545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3500200)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3500200)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMSA000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMSA000000000.  This version of the
            project (01) has the accession number NZ_JAQMSA010000000, and
            consists of sequences JAQMSA010000001-JAQMSA010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028330545.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:46:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,636
            CDSs (total)                      :: 3,567
            Genes (coding)                    :: 3,455
            CDSs (with protein)               :: 3,455
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 34 of 112
            Pseudo Genes (incomplete)         :: 87 of 112
            Pseudo Genes (internal stop)      :: 14 of 112
            Pseudo Genes (multiple problems)  :: 21 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3500200
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_113"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMSA010000001-JAQMSA010000054
WGS_SCAFLD  NZ_JAQMSA010000001-NZ_JAQMSA010000054
//
LOCUS       NZ_JAQMRT010000000   3498569 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_37, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRT000000000
VERSION     NZ_JAQMRT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800014
            Assembly: GCF_028329625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3498569)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3498569)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRT000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRT000000000.  This version of the
            project (01) has the accession number NZ_JAQMRT010000000, and
            consists of sequences JAQMRT010000001-JAQMRT010000039.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028329625.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:51:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,628
            CDSs (total)                      :: 3,560
            Genes (coding)                    :: 3,451
            CDSs (with protein)               :: 3,451
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 34 of 109
            Pseudo Genes (incomplete)         :: 84 of 109
            Pseudo Genes (internal stop)      :: 14 of 109
            Pseudo Genes (multiple problems)  :: 21 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3498569
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_37"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRT010000001-JAQMRT010000039
WGS_SCAFLD  NZ_JAQMRT010000001-NZ_JAQMRT010000039
//
LOCUS       NZ_JAQMSB010000000   3500503 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_110, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMSB000000000
VERSION     NZ_JAQMSB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800006
            Assembly: GCF_028330555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3500503)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3500503)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMSB000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMSB000000000.  This version of the
            project (01) has the accession number NZ_JAQMSB010000000, and
            consists of sequences JAQMSB010000001-JAQMSB010000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028330555.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:49:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,637
            CDSs (total)                      :: 3,566
            Genes (coding)                    :: 3,456
            CDSs (with protein)               :: 3,456
            Genes (RNA)                       :: 71
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 34 of 110
            Pseudo Genes (incomplete)         :: 85 of 110
            Pseudo Genes (internal stop)      :: 14 of 110
            Pseudo Genes (multiple problems)  :: 21 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3500503
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_110"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMSB010000001-JAQMSB010000051
WGS_SCAFLD  NZ_JAQMSB010000001-NZ_JAQMSB010000051
//
LOCUS       NZ_JANZXN010000000   3759489 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Natronobiforma cellulositropha strain JCM 31939, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JANZXN000000000
VERSION     NZ_JANZXN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30618640
            Assembly: GCF_025629245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronobiforma cellulositropha
  ORGANISM  Natronobiforma cellulositropha
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronobiforma.
REFERENCE   1  (bases 1 to 3759489)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3759489)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANZXN000000000.1.
            The Natronobiforma cellulositropha whole genome shotgun (WGS)
            project has the project accession NZ_JANZXN000000000.  This version
            of the project (01) has the accession number NZ_JANZXN010000000,
            and consists of sequences JANZXN010000001-JANZXN010000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025629245.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:42:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,646
            CDSs (total)                      :: 3,595
            Genes (coding)                    :: 3,533
            CDSs (with protein)               :: 3,533
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 14 of 62
            Pseudo Genes (incomplete)         :: 51 of 62
            Pseudo Genes (internal stop)      :: 12 of 62
            Pseudo Genes (multiple problems)  :: 12 of 62
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3759489
                     /organism="Natronobiforma cellulositropha"
                     /mol_type="genomic DNA"
                     /strain="JCM 31939"
                     /isolation_source="hypersaline alkaline lakes"
                     /type_material="type strain of Natronobiforma
                     cellulositropha"
                     /db_xref="taxon:1679076"
                     /geo_loc_name="Russia: Kulunda Steppe"
                     /collection_date="2013-07-07"
WGS         JANZXN010000001-JANZXN010000060
WGS_SCAFLD  NZ_JANZXN010000001-NZ_JANZXN010000060
//
LOCUS       NZ_JAOPKA010000000   5586668 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Natronoglomus mannanivorans strain AArc-xg1-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOPKA000000000
VERSION     NZ_JAOPKA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30921868
            Assembly: GCF_025517495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronoglomus mannanivorans
  ORGANISM  Natronoglomus mannanivorans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronoglomus.
REFERENCE   1  (bases 1 to 5586668)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Khizhniak,T.V., Kolganova,T.V. and
            Kublanov,I.V.
  TITLE     Enrichment on poylsaccharides allowed isolation of novel metabolic
            and taxonomic groups of Haloarchaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5586668)
  AUTHORS   Elcheninov,A.G., Kublanov,I.V. and Sorokin,D.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2022) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOPKA000000000.1.
            The Natronoglomus mannanivorans whole genome shotgun (WGS) project
            has the project accession NZ_JAOPKA000000000.  This version of the
            project (01) has the accession number NZ_JAOPKA010000000, and
            consists of sequences JAOPKA010000001-JAOPKA010000067.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 636x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025517495.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:46:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,232
            CDSs (total)                      :: 5,181
            Genes (coding)                    :: 5,067
            CDSs (with protein)               :: 5,067
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 32 of 114
            Pseudo Genes (incomplete)         :: 91 of 114
            Pseudo Genes (internal stop)      :: 20 of 114
            Pseudo Genes (multiple problems)  :: 25 of 114
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5586668
                     /organism="Natronoglomus mannanivorans"
                     /mol_type="genomic DNA"
                     /strain="AArc-xg1-1"
                     /isolation_source="sediment and brine samples obtained
                     from hypersaline lake"
                     /db_xref="taxon:2979990"
                     /geo_loc_name="Russia: Altai Region"
                     /lat_lon="51.65 N 79.8001 E"
                     /collection_date="2017-07"
WGS         JAOPKA010000001-JAOPKA010000067
WGS_SCAFLD  NZ_JAOPKA010000001-NZ_JAOPKA010000067
//
LOCUS       NZ_JAOPKB010000000   5506396 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Natronoglomus mannanivorans strain AArc-m2/3/4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAOPKB000000000
VERSION     NZ_JAOPKB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30921869
            Assembly: GCF_025517485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronoglomus mannanivorans
  ORGANISM  Natronoglomus mannanivorans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronoglomus.
REFERENCE   1  (bases 1 to 5506396)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Khizhniak,T.V., Kolganova,T.V. and
            Kublanov,I.V.
  TITLE     Enrichment on poylsaccharides allowed isolation of novel metabolic
            and taxonomic groups of Haloarchaea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5506396)
  AUTHORS   Elcheninov,A.G., Kublanov,I.V. and Sorokin,D.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2022) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOPKB000000000.1.
            The Natronoglomus mannanivorans whole genome shotgun (WGS) project
            has the project accession NZ_JAOPKB000000000.  This version of the
            project (01) has the accession number NZ_JAOPKB010000000, and
            consists of sequences JAOPKB010000001-JAOPKB010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 469x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025517485.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:49:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,145
            CDSs (total)                      :: 5,094
            Genes (coding)                    :: 4,955
            CDSs (with protein)               :: 4,955
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 47 of 139
            Pseudo Genes (incomplete)         :: 102 of 139
            Pseudo Genes (internal stop)      :: 28 of 139
            Pseudo Genes (multiple problems)  :: 32 of 139
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5506396
                     /organism="Natronoglomus mannanivorans"
                     /mol_type="genomic DNA"
                     /strain="AArc-m2/3/4"
                     /isolation_source="sediment and brine samples obtained
                     from hypersaline lake"
                     /type_material="type strain of Natronoglomus
                     mannanivorans"
                     /db_xref="taxon:2979990"
                     /geo_loc_name="Russia: Altai Region"
                     /lat_lon="51.65001 N 79.8001 E"
                     /collection_date="2017-07"
WGS         JAOPKB010000001-JAOPKB010000046
WGS_SCAFLD  NZ_JAOPKB010000001-NZ_JAOPKB010000046
//
LOCUS       NZ_JAWXXQ010000000   3907482 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Haloferax mediterranei ATCC 33500, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAWXXQ000000000
VERSION     NZ_JAWXXQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38186257
            Assembly: GCF_033843025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax mediterranei ATCC 33500
  ORGANISM  Haloferax mediterranei ATCC 33500
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3907482)
  AUTHORS   Crits-Christoph,A., Kang,S.C., Lee,H. and Ostrov,N.
  TITLE     MicrobeMod: A computational toolkit for identifying prokaryotic
            methylation and restriction-modification with nanopore sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3907482)
  AUTHORS   Crits-Christoph,A., Kang,S.C., Lee,H. and Ostrov,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-NOV-2023) Cultivarium, Cultivarium, 490 Arsenal Way,
            Watertown, MA 02472, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWXXQ000000000.1.
            The Haloferax mediterranei ATCC 33500 whole genome shotgun (WGS)
            project has the project accession NZ_JAWXXQ000000000.  This version
            of the project (01) has the accession number NZ_JAWXXQ010000000,
            and consists of sequences JAWXXQ010000001-JAWXXQ010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9-b1768
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 185x
            Sequencing Technology  :: Oxford Nanopore MinION; Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_033843025.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:52:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,949
            CDSs (total)                      :: 3,884
            Genes (coding)                    :: 3,813
            CDSs (with protein)               :: 3,813
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 33 of 71
            Pseudo Genes (incomplete)         :: 52 of 71
            Pseudo Genes (internal stop)      :: 22 of 71
            Pseudo Genes (multiple problems)  :: 26 of 71
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3907482
                     /organism="Haloferax mediterranei ATCC 33500"
                     /mol_type="genomic DNA"
                     /strain="ATCC 33500"
                     /isolation_source="Salt ponds"
                     /culture_collection="ATCC:33500"
                     /type_material="type strain of Halobacterium mediterranei"
                     /db_xref="taxon:523841"
                     /geo_loc_name="Spain: Alicante"
                     /collection_date="1980"
WGS         JAWXXQ010000001-JAWXXQ010000004
WGS_SCAFLD  NZ_JAWXXQ010000001-NZ_JAWXXQ010000004
//
LOCUS       NZ_JAMQOP010000000   4516345 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halogeometricum salsisoli strain S1BR25-6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMQOP000000000
VERSION     NZ_JAMQOP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28864576
            Assembly: GCF_031624495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum salsisoli
  ORGANISM  Halogeometricum salsisoli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1  (bases 1 to 4516345)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halogeometricum sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4516345)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOP000000000.1.
            The Halogeometricum salsisoli whole genome shotgun (WGS) project
            has the project accession NZ_JAMQOP000000000.  This version of the
            project (01) has the accession number NZ_JAMQOP010000000, and
            consists of sequences JAMQOP010000001-JAMQOP010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 384.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031624495.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:53:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,531
            CDSs (total)                      :: 4,474
            Genes (coding)                    :: 4,381
            CDSs (with protein)               :: 4,381
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 40 of 93
            Pseudo Genes (incomplete)         :: 57 of 93
            Pseudo Genes (internal stop)      :: 27 of 93
            Pseudo Genes (multiple problems)  :: 26 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4516345
                     /organism="Halogeometricum salsisoli"
                     /mol_type="genomic DNA"
                     /strain="S1BR25-6"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halogeometricum salsisoli"
                     /db_xref="taxon:2950536"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQOP010000001-JAMQOP010000009
WGS_SCAFLD  NZ_JAMQOP010000001-NZ_JAMQOP010000009
//
LOCUS       NZ_JAQIVI010000000   6023675 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Natrinema soli strain LMG 29247, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAQIVI000000000
VERSION     NZ_JAQIVI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32723775
            Assembly: GCF_028618695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema soli
  ORGANISM  Natrinema soli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 6023675)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6023675)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2023) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQIVI000000000.1.
            The Natrinema soli whole genome shotgun (WGS) project has the
            project accession NZ_JAQIVI000000000.  This version of the project
            (01) has the accession number NZ_JAQIVI010000000, and consists of
            sequences JAQIVI010000001-JAQIVI010000848.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 112.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028618695.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:56:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,896
            CDSs (total)                      :: 6,841
            Genes (coding)                    :: 5,956
            CDSs (with protein)               :: 5,956
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 885
            CDSs (without protein)            :: 885
            Pseudo Genes (ambiguous residues) :: 0 of 885
            Pseudo Genes (frameshifted)       :: 187 of 885
            Pseudo Genes (incomplete)         :: 765 of 885
            Pseudo Genes (internal stop)      :: 107 of 885
            Pseudo Genes (multiple problems)  :: 149 of 885
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6023675
                     /organism="Natrinema soli"
                     /mol_type="genomic DNA"
                     /strain="LMG 29247"
                     /isolation_source="soil"
                     /type_material="type strain of Natrinema soli"
                     /db_xref="taxon:1930624"
                     /geo_loc_name="Iran: Arak, Meighan Wetland"
                     /collection_date="2013-06"
WGS         JAQIVI010000001-JAQIVI010000848
WGS_SCAFLD  NZ_JAQIVI010000001-NZ_JAQIVI010000848
//
LOCUS       NZ_JANHDM010000000   3227153 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halorubrum rubrum strain YC87, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHDM000000000
VERSION     NZ_JANHDM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29911663
            Assembly: GCF_024494685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum rubrum
  ORGANISM  Halorubrum rubrum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3227153)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3227153)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDM000000000.1.
            The Halorubrum rubrum whole genome shotgun (WGS) project has the
            project accession NZ_JANHDM000000000.  This version of the project
            (01) has the accession number NZ_JANHDM010000000, and consists of
            sequences JANHDM010000001-JANHDM010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 166.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024494685.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:59:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,281
            CDSs (total)                      :: 3,224
            Genes (coding)                    :: 3,145
            CDSs (with protein)               :: 3,145
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 16 of 79
            Pseudo Genes (incomplete)         :: 66 of 79
            Pseudo Genes (internal stop)      :: 6 of 79
            Pseudo Genes (multiple problems)  :: 9 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227153
                     /organism="Halorubrum rubrum"
                     /mol_type="genomic DNA"
                     /strain="YC87"
                     /isolation_source="salt lake"
                     /type_material="type strain of Halorubrum rubrum"
                     /db_xref="taxon:1126240"
                     /geo_loc_name="China: Shanxi, Yuncheng"
                     /collection_date="2010-06"
WGS         JANHDM010000001-JANHDM010000025
WGS_SCAFLD  NZ_JANHDM010000001-NZ_JANHDM010000025
//
LOCUS       NZ_JAODIW010000000   4461505 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halobium salinum strain YJ-8-S, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAODIW000000000
VERSION     NZ_JAODIW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30883932
            Assembly: GCF_026586625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobium salinum
  ORGANISM  Halobium salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobium.
REFERENCE   1  (bases 1 to 4461505)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4461505)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAODIW000000000.1.
            The Halobium salinum whole genome shotgun (WGS) project has the
            project accession NZ_JAODIW000000000.  This version of the project
            (01) has the accession number NZ_JAODIW010000000, and consists of
            sequences JAODIW010000001-JAODIW010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 253.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026586625.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:59:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,449
            CDSs (total)                      :: 4,386
            Genes (coding)                    :: 4,335
            CDSs (with protein)               :: 4,335
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 16 of 51
            Pseudo Genes (incomplete)         :: 37 of 51
            Pseudo Genes (internal stop)      :: 10 of 51
            Pseudo Genes (multiple problems)  :: 10 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4461505
                     /organism="Halobium salinum"
                     /mol_type="genomic DNA"
                     /strain="YJ-8-S"
                     /isolation_source="Yangjiang marine solar saltern"
                     /type_material="type strain of Halobium salinum"
                     /db_xref="taxon:1364940"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2012-10"
WGS         JAODIW010000001-JAODIW010000014
WGS_SCAFLD  NZ_JAODIW010000001-NZ_JAODIW010000014
//
LOCUS       NZ_JAMQOQ010000000   4663999 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Halogeometricum luteum strain S3BR25-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMQOQ000000000
VERSION     NZ_JAMQOQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28864577
            Assembly: GCF_031624635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halogeometricum luteum
  ORGANISM  Halogeometricum luteum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halogeometricum.
REFERENCE   1  (bases 1 to 4663999)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Halogeometricum sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4663999)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOQ000000000.1.
            The Halogeometricum luteum whole genome shotgun (WGS) project has
            the project accession NZ_JAMQOQ000000000.  This version of the
            project (01) has the accession number NZ_JAMQOQ010000000, and
            consists of sequences JAMQOQ010000001-JAMQOQ010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 448.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031624635.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 13:15:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,734
            CDSs (total)                      :: 4,672
            Genes (coding)                    :: 4,604
            CDSs (with protein)               :: 4,604
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 16 of 68
            Pseudo Genes (incomplete)         :: 52 of 68
            Pseudo Genes (internal stop)      :: 8 of 68
            Pseudo Genes (multiple problems)  :: 7 of 68
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4663999
                     /organism="Halogeometricum luteum"
                     /mol_type="genomic DNA"
                     /strain="S3BR25-2"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halogeometricum luteum"
                     /db_xref="taxon:2950537"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQOQ010000001-JAMQOQ010000022
WGS_SCAFLD  NZ_JAMQOQ010000001-NZ_JAMQOQ010000022
//
LOCUS       NZ_JAIVEF010000000   4528910 bp    DNA     linear   BCT 05-MAY-2025
DEFINITION  Saliphagus infecundisoli strain YIM 93707, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAIVEF000000000
VERSION     NZ_JAIVEF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21561969
            Assembly: GCF_020177165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saliphagus infecundisoli
  ORGANISM  Saliphagus infecundisoli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Saliphagus.
REFERENCE   1  (bases 1 to 4528910)
  AUTHORS   Yin,X.Q., Liu,B.B., Chu,X., Salam,N., Li,X., Yang,Z.W., Zhang,Y.,
            Xiao,M. and Li,W.J.
  TITLE     Saliphagus infecundisoli gen. nov., sp. nov., an extremely
            halophilic archaeon isolated from a saline soil
  JOURNAL   Int J Syst Evol Microbiol 67 (10), 4154-4160 (2017)
   PUBMED   28905703
REFERENCE   2  (bases 1 to 4528910)
  AUTHORS   Liu,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2021) School of Biological and Chemical
            Engineering, Nanyang Institute of Technology, No. 80, Changjiang
            West Road, Nanyang 473004, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIVEF000000000.1.
            The Saliphagus infecundisoli whole genome shotgun (WGS) project has
            the project accession NZ_JAIVEF000000000.  This version of the
            project (01) has the accession number NZ_JAIVEF010000000, and
            consists of sequences JAIVEF010000001-JAIVEF010000078.
            Bacteria and source DNA available from culture collection
            identifier.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 10-AUG-2017
            Assembly Method        :: SPAdes v. Aug-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020177165.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 12:28:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,652
            CDSs (total)                      :: 4,586
            Genes (coding)                    :: 4,397
            CDSs (with protein)               :: 4,397
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 189
            CDSs (without protein)            :: 189
            Pseudo Genes (ambiguous residues) :: 0 of 189
            Pseudo Genes (frameshifted)       :: 70 of 189
            Pseudo Genes (incomplete)         :: 157 of 189
            Pseudo Genes (internal stop)      :: 32 of 189
            Pseudo Genes (multiple problems)  :: 57 of 189
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4528910
                     /organism="Saliphagus infecundisoli"
                     /mol_type="genomic DNA"
                     /strain="YIM 93707"
                     /isolation_source="soil"
                     /culture_collection="YIM:93707"
                     /db_xref="taxon:1849069"
                     /geo_loc_name="China: Loulan"
                     /collection_date="2017-05-30"
WGS         JAIVEF010000001-JAIVEF010000078
WGS_SCAFLD  NZ_JAIVEF010000001-NZ_JAIVEF010000078
//
LOCUS       NZ_JAQMRX010000000   3680827 bp    DNA     linear   BCT 06-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_123, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRX000000000
VERSION     NZ_JAQMRX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800010
            Assembly: GCF_028329965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3680827)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3680827)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRX000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRX000000000.  This version of the
            project (01) has the accession number NZ_JAQMRX010000000, and
            consists of sequences JAQMRX010000001-JAQMRX010000085.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028329965.1-RS_2025_05_06
            Annotation Date                   :: 05/06/2025 11:46:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,724
            CDSs (total)                      :: 3,655
            Genes (coding)                    :: 3,505
            CDSs (with protein)               :: 3,505
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 29 of 150
            Pseudo Genes (incomplete)         :: 128 of 150
            Pseudo Genes (internal stop)      :: 31 of 150
            Pseudo Genes (multiple problems)  :: 33 of 150
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3680827
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_123"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRX010000001-JAQMRX010000085
WGS_SCAFLD  NZ_JAQMRX010000001-NZ_JAQMRX010000085
//
LOCUS       NZ_JAQMRV010000000   3683464 bp    DNA     linear   BCT 06-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_126, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRV000000000
VERSION     NZ_JAQMRV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800012
            Assembly: GCF_028330585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3683464)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3683464)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRV000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRV000000000.  This version of the
            project (01) has the accession number NZ_JAQMRV010000000, and
            consists of sequences JAQMRV010000001-JAQMRV010000075.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028330585.1-RS_2025_05_06
            Annotation Date                   :: 05/06/2025 11:52:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,719
            CDSs (total)                      :: 3,650
            Genes (coding)                    :: 3,505
            CDSs (with protein)               :: 3,505
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 29 of 145
            Pseudo Genes (incomplete)         :: 122 of 145
            Pseudo Genes (internal stop)      :: 32 of 145
            Pseudo Genes (multiple problems)  :: 33 of 145
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3683464
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_126"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRV010000001-JAQMRV010000075
WGS_SCAFLD  NZ_JAQMRV010000001-NZ_JAQMRV010000075
//
LOCUS       NZ_JAQMRW010000000   3530409 bp    DNA     linear   BCT 06-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_125, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRW000000000
VERSION     NZ_JAQMRW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800011
            Assembly: GCF_028330445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3530409)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3530409)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRW000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRW000000000.  This version of the
            project (01) has the accession number NZ_JAQMRW010000000, and
            consists of sequences JAQMRW010000001-JAQMRW010000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028330445.1-RS_2025_05_06
            Annotation Date                   :: 05/06/2025 11:47:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,672
            CDSs (total)                      :: 3,603
            Genes (coding)                    :: 3,480
            CDSs (with protein)               :: 3,480
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 34 of 123
            Pseudo Genes (incomplete)         :: 98 of 123
            Pseudo Genes (internal stop)      :: 14 of 123
            Pseudo Genes (multiple problems)  :: 21 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3530409
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_125"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRW010000001-JAQMRW010000064
WGS_SCAFLD  NZ_JAQMRW010000001-NZ_JAQMRW010000064
//
LOCUS       NZ_CAJEIZ010000000   2972458 bp    DNA     linear   ENV 08-MAY-2025
DEFINITION  MAG: Haloquadratum walsbyi isolate D2T01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJEIZ000000000
VERSION     NZ_CAJEIZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7074294
            Assembly: GCF_903989505.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Haloquadratum walsbyi (hypersaline lake metagenome)
  ORGANISM  Haloquadratum walsbyi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloquadratum.
REFERENCE   1  (bases 1 to 2972458)
  AUTHORS   Viver TVP,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2020) IMEDEA, Marine microbiology group, 07190,
            07190, Balearic Islands, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJEIZ000000000.1.
            The Haloquadratum walsbyi whole genome shotgun (WGS) project has
            the project accession NZ_CAJEIZ000000000.  This version of the
            project (01) has the accession number NZ_CAJEIZ010000000, and
            consists of sequences CAJEIZ010000001-CAJEIZ010000176.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903989505.1-RS_2025_05_08
            Annotation Date                   :: 05/08/2025 09:38:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,796
            CDSs (total)                      :: 2,742
            Genes (coding)                    :: 2,573
            CDSs (with protein)               :: 2,573
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 169
            CDSs (without protein)            :: 169
            Pseudo Genes (ambiguous residues) :: 0 of 169
            Pseudo Genes (frameshifted)       :: 51 of 169
            Pseudo Genes (incomplete)         :: 137 of 169
            Pseudo Genes (internal stop)      :: 42 of 169
            Pseudo Genes (multiple problems)  :: 46 of 169
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2972458
                     /organism="Haloquadratum walsbyi"
                     /mol_type="genomic DNA"
                     /isolate="D2T01"
                     /isolation_source="Hipersaline environment"
                     /db_xref="taxon:293091"
                     /environmental_sample
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         CAJEIZ010000001-CAJEIZ010000176
WGS_SCAFLD  NZ_CAJEIZ010000001-NZ_CAJEIZ010000176
//
LOCUS       NZ_BAAADV010000000   3565135 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Natronoarchaeum mannanilyticum strain JCM 16328, whole genome
            shotgun sequencing project.
ACCESSION   NZ_BAAADV000000000
VERSION     NZ_BAAADV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00644969
            Assembly: GCF_039522665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronoarchaeum mannanilyticum
  ORGANISM  Natronoarchaeum mannanilyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3565135)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAAADV000000000.1.
            The Natronoarchaeum mannanilyticum whole genome shotgun (WGS)
            project has the project accession NZ_BAAADV000000000.  This version
            of the project (01) has the accession number NZ_BAAADV010000000,
            and consists of sequences BAAADV010000001-BAAADV010000010.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009020
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.45
            Genome Coverage       :: 789x
            Sequencing Technology :: MGISEQ-2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039522665.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 09:27:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,635
            CDSs (total)                      :: 3,577
            Genes (coding)                    :: 3,542
            CDSs (with protein)               :: 3,542
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 11 of 35
            Pseudo Genes (incomplete)         :: 23 of 35
            Pseudo Genes (internal stop)      :: 5 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3565135
                     /organism="Natronoarchaeum mannanilyticum"
                     /mol_type="genomic DNA"
                     /strain="JCM 16328"
                     /isolation_source="Commercial salt made from Japanese
                     seawater"
                     /culture_collection="JCM:16328"
                     /type_material="type strain of Natronoarchaeum
                     mannanilyticum"
                     /db_xref="taxon:926360"
                     /geo_loc_name="Japan"
                     /collection_date="2008-01-01"
WGS         BAAADV010000001-BAAADV010000010
WGS_SCAFLD  NZ_BAAADV010000001-NZ_BAAADV010000010
//
LOCUS       NZ_BAAADU010000000   2339560 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Salarchaeum japonicum strain JCM 16327, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAAADU000000000
VERSION     NZ_BAAADU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00644968
            Assembly: GCF_039522645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salarchaeum japonicum
  ORGANISM  Salarchaeum japonicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2339560)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAAADU000000000.1.
            The Salarchaeum japonicum whole genome shotgun (WGS) project has
            the project accession NZ_BAAADU000000000.  This version of the
            project (01) has the accession number NZ_BAAADU010000000, and
            consists of sequences BAAADU010000001-BAAADU010000002.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009019
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.44
            Genome Coverage       :: 400x
            Sequencing Technology :: MGISEQ-2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039522645.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 09:23:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,623
            CDSs (total)                      :: 2,571
            Genes (coding)                    :: 2,566
            CDSs (with protein)               :: 2,566
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 5 of 5
            Pseudo Genes (internal stop)      :: 0 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339560
                     /organism="Salarchaeum japonicum"
                     /mol_type="genomic DNA"
                     /strain="JCM 16327"
                     /isolation_source="Commercial salt made from seawater in
                     Yonaguni island"
                     /culture_collection="JCM:16327"
                     /type_material="type strain of Salarchaeum japonicum"
                     /db_xref="taxon:555573"
                     /geo_loc_name="Japan"
                     /collection_date="2008-01-01"
WGS         BAAADU010000001-BAAADU010000002
WGS_SCAFLD  NZ_BAAADU010000001-NZ_BAAADU010000002
//
LOCUS       NZ_BAAADQ010000000   3400603 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Halorubrum ejinorense strain JCM 14265, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAAADQ000000000
VERSION     NZ_BAAADQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00644964
            Assembly: GCF_039522565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ejinorense
  ORGANISM  Halorubrum ejinorense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3400603)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAAADQ000000000.1.
            The Halorubrum ejinorense whole genome shotgun (WGS) project has
            the project accession NZ_BAAADQ000000000.  This version of the
            project (01) has the accession number NZ_BAAADQ010000000, and
            consists of sequences BAAADQ010000001-BAAADQ010000021.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10008994
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.40
            Genome Coverage       :: 117x
            Sequencing Technology :: MGISEQ-2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039522565.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 09:24:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,419
            CDSs (total)                      :: 3,365
            Genes (coding)                    :: 3,322
            CDSs (with protein)               :: 3,322
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 15 of 43
            Pseudo Genes (incomplete)         :: 30 of 43
            Pseudo Genes (internal stop)      :: 10 of 43
            Pseudo Genes (multiple problems)  :: 10 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400603
                     /organism="Halorubrum ejinorense"
                     /mol_type="genomic DNA"
                     /strain="JCM 14265"
                     /isolation_source="Water from Lake Ejinor in Inner
                     Mongolia"
                     /culture_collection="JCM:14265"
                     /type_material="type strain of Halorubrum ejinorense"
                     /db_xref="taxon:425309"
                     /geo_loc_name="China"
WGS         BAAADQ010000001-BAAADQ010000021
WGS_SCAFLD  NZ_BAAADQ010000001-NZ_BAAADQ010000021
//
LOCUS       NZ_BAAADX010000000   3082184 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Halorubrum trapanicum strain JCM 10477, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAAADX000000000
VERSION     NZ_BAAADX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00644971
            Assembly: GCF_039522705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum trapanicum
  ORGANISM  Halorubrum trapanicum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3082184)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAAADX000000000.1.
            The Halorubrum trapanicum whole genome shotgun (WGS) project has
            the project accession NZ_BAAADX000000000.  This version of the
            project (01) has the accession number NZ_BAAADX010000000, and
            consists of sequences BAAADX010000001-BAAADX010000030.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009060
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.47
            Genome Coverage       :: 305x
            Sequencing Technology :: MGISEQ-2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039522705.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 09:27:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,096
            CDSs (total)                      :: 3,040
            Genes (coding)                    :: 2,972
            CDSs (with protein)               :: 2,972
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 21 of 68
            Pseudo Genes (incomplete)         :: 49 of 68
            Pseudo Genes (internal stop)      :: 13 of 68
            Pseudo Genes (multiple problems)  :: 12 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082184
                     /organism="Halorubrum trapanicum"
                     /mol_type="genomic DNA"
                     /strain="JCM 10477"
                     /isolation_source="Solar salt"
                     /culture_collection="JCM:10477"
                     /type_material="type strain of Halorubrum trapanicum"
                     /db_xref="taxon:29284"
                     /geo_loc_name="Italy"
                     /collection_date="1998-06-30"
WGS         BAAADX010000001-BAAADX010000030
WGS_SCAFLD  NZ_BAAADX010000001-NZ_BAAADX010000030
//
LOCUS       NZ_BAAADN010000000   3842862 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Halococcus dombrowskii strain JCM 12289, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAAADN000000000
VERSION     NZ_BAAADN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00644961
            Assembly: GCF_039522505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus dombrowskii
  ORGANISM  Halococcus dombrowskii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3842862)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAAADN000000000.1.
            The Halococcus dombrowskii whole genome shotgun (WGS) project has
            the project accession NZ_BAAADN000000000.  This version of the
            project (01) has the accession number NZ_BAAADN010000000, and
            consists of sequences BAAADN010000001-BAAADN010000115.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10008985
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.37
            Genome Coverage       :: 266x
            Sequencing Technology :: MGISEQ-2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039522505.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 09:26:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,007
            CDSs (total)                      :: 3,945
            Genes (coding)                    :: 3,788
            CDSs (with protein)               :: 3,788
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 157
            CDSs (without protein)            :: 157
            Pseudo Genes (ambiguous residues) :: 0 of 157
            Pseudo Genes (frameshifted)       :: 45 of 157
            Pseudo Genes (incomplete)         :: 128 of 157
            Pseudo Genes (internal stop)      :: 18 of 157
            Pseudo Genes (multiple problems)  :: 30 of 157
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3842862
                     /organism="Halococcus dombrowskii"
                     /mol_type="genomic DNA"
                     /strain="JCM 12289"
                     /isolation_source="Dry Permina rock salt from the salt
                     mine in Bad Ischl"
                     /culture_collection="JCM:12289"
                     /type_material="type strain of Halococcus dombrowskii"
                     /db_xref="taxon:179637"
                     /geo_loc_name="Austria"
                     /collection_date="2001-09-20"
WGS         BAAADN010000001-BAAADN010000115
WGS_SCAFLD  NZ_BAAADN010000001-NZ_BAAADN010000115
//
LOCUS       NZ_BAAADP010000000   3303094 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Halorubrum aquaticum strain JCM 14031, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAAADP000000000
VERSION     NZ_BAAADP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00644963
            Assembly: GCF_039522545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum aquaticum
  ORGANISM  Halorubrum aquaticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 3303094)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAAADP000000000.1.
            The Halorubrum aquaticum whole genome shotgun (WGS) project has the
            project accession NZ_BAAADP000000000.  This version of the project
            (01) has the accession number NZ_BAAADP010000000, and consists of
            sequences BAAADP010000001-BAAADP010000009.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10008992
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.39
            Genome Coverage       :: 257x
            Sequencing Technology :: MGISEQ-2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039522545.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 09:29:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,292
            CDSs (total)                      :: 3,238
            Genes (coding)                    :: 3,175
            CDSs (with protein)               :: 3,175
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 20 of 63
            Pseudo Genes (incomplete)         :: 45 of 63
            Pseudo Genes (internal stop)      :: 11 of 63
            Pseudo Genes (multiple problems)  :: 11 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303094
                     /organism="Halorubrum aquaticum"
                     /mol_type="genomic DNA"
                     /strain="JCM 14031"
                     /isolation_source="Saline lake Erliannor in Inner
                     Mongolia"
                     /culture_collection="JCM:14031"
                     /type_material="type strain of Halorubrum aquaticum"
                     /db_xref="taxon:387340"
                     /geo_loc_name="China"
                     /collection_date="2006-06-08"
WGS         BAAADP010000001-BAAADP010000009
WGS_SCAFLD  NZ_BAAADP010000001-NZ_BAAADP010000009
//
LOCUS       NZ_BAAABL010000000   2752016 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Halarchaeum salinum strain JCM 16330, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAAABL000000000
VERSION     NZ_BAAABL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00245261
            Assembly: GCF_039520965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum salinum
  ORGANISM  Halarchaeum salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 2752016)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAAABL000000000.1.
            The Halarchaeum salinum whole genome shotgun (WGS) project has the
            project accession NZ_BAAABL000000000.  This version of the project
            (01) has the accession number NZ_BAAABL010000000, and consists of
            sequences BAAABL010000001-BAAABL010000108.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10009066
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.0
            Genome Coverage       :: 142x
            Sequencing Technology :: Illumina Novaseq 6000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039520965.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 09:27:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,981
            CDSs (total)                      :: 2,930
            Genes (coding)                    :: 2,791
            CDSs (with protein)               :: 2,791
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 42 of 139
            Pseudo Genes (incomplete)         :: 119 of 139
            Pseudo Genes (internal stop)      :: 16 of 139
            Pseudo Genes (multiple problems)  :: 34 of 139
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752016
                     /organism="Halarchaeum salinum"
                     /mol_type="genomic DNA"
                     /strain="JCM 16330"
                     /culture_collection="JCM:16330"
                     /type_material="type strain of Halarchaeum salinum"
                     /db_xref="taxon:489912"
WGS         BAAABL010000001-BAAABL010000108
WGS_SCAFLD  NZ_BAAABL010000001-NZ_BAAABL010000108
//
LOCUS       NZ_BAABDY010000000   4030046 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Haloarcula argentinensis strain JCM 15760, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAABDY000000000
VERSION     NZ_BAABDY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00645661
            Assembly: GCF_039539865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula argentinensis
  ORGANISM  Haloarcula argentinensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 4030046)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAABDY000000000.1.
            The Haloarcula argentinensis whole genome shotgun (WGS) project has
            the project accession NZ_BAABDY000000000.  This version of the
            project (01) has the accession number NZ_BAABDY010000000, and
            consists of sequences BAABDY010000001-BAABDY010000009.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10022627
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.737
            Genome Coverage       :: 120x
            Sequencing Technology :: MGISEQ-2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039539865.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 11:33:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,140
            CDSs (total)                      :: 4,060
            Genes (coding)                    :: 4,005
            CDSs (with protein)               :: 4,005
            Genes (RNA)                       :: 80
            rRNAs                             :: 4, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 19 of 55
            Pseudo Genes (incomplete)         :: 39 of 55
            Pseudo Genes (internal stop)      :: 14 of 55
            Pseudo Genes (multiple problems)  :: 14 of 55
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4030046
                     /organism="Haloarcula argentinensis"
                     /mol_type="genomic DNA"
                     /strain="JCM 15760"
                     /isolation_source="Salt in a fish sauce sample"
                     /culture_collection="JCM:15760"
                     /type_material="type strain of Haloarcula tradensis"
                     /db_xref="taxon:43776"
                     /geo_loc_name="Thailand"
                     /collection_date="2010"
WGS         BAABDY010000001-BAABDY010000009
WGS_SCAFLD  NZ_BAABDY010000001-NZ_BAABDY010000009
//
LOCUS       NZ_BAABKX010000000   5693570 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Haladaptatus pallidirubidus strain JCM 17504, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAABKX000000000
VERSION     NZ_BAABKX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00645855
            Assembly: GCF_039544045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus pallidirubidus
  ORGANISM  Haladaptatus pallidirubidus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1
  AUTHORS   Wu,L. and Ma,J.
  TITLE     The Global Catalogue of Microorganisms (GCM) 10K type strain
            sequencing project: providing services to taxonomists for standard
            genome sequencing and annotation
  JOURNAL   Int J Syst Evol Microbiol 69 (4), 895-898 (2019)
   PUBMED   30832757
REFERENCE   2  (bases 1 to 5693570)
  AUTHORS   Sun,Q. and Inoue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2023) Contact:Qinglan Sun Institute of
            Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data
            Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao
            Yun Cun, Chaoyang, Beijing, Beijing 100101, China URL
            :http://www.wdcm.org/
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAABKX000000000.1.
            The Haladaptatus pallidirubidus whole genome shotgun (WGS) project
            has the project accession NZ_BAABKX000000000.  This version of the
            project (01) has the accession number NZ_BAABKX010000000, and
            consists of sequences BAABKX010000001-BAABKX010000030.
            Genome sequencing and analysis were conducted under the Global
            Catalogue of Microorganisms (GCM) 10K type strain sequencing
            project (http://gctype.wdcm.org). The genomic data are also
            available at http://gctype.wdcm.org/sequencing/GCM10025751
            
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04; SPAdes v. 3.13.0;
                                     Velvet v. 1.2.10; Platanus-b v. 1.2.931
            Genome Coverage       :: 60x
            Sequencing Technology :: MGISEQ-2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039544045.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 12:12:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,017
            CDSs (total)                      :: 5,948
            Genes (coding)                    :: 5,735
            CDSs (with protein)               :: 5,735
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 6, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 6, 3 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 213
            CDSs (without protein)            :: 213
            Pseudo Genes (ambiguous residues) :: 0 of 213
            Pseudo Genes (frameshifted)       :: 80 of 213
            Pseudo Genes (incomplete)         :: 147 of 213
            Pseudo Genes (internal stop)      :: 56 of 213
            Pseudo Genes (multiple problems)  :: 57 of 213
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5693570
                     /organism="Haladaptatus pallidirubidus"
                     /mol_type="genomic DNA"
                     /strain="JCM 17504"
                     /isolation_source="Saline soil in Lup Nur region"
                     /culture_collection="JCM:17504"
                     /type_material="type strain of Haladaptatus
                     pallidirubidus"
                     /db_xref="taxon:1008152"
                     /geo_loc_name="China"
WGS         BAABKX010000001-BAABKX010000030
WGS_SCAFLD  NZ_BAABKX010000001-NZ_BAABKX010000030
//
LOCUS       NZ_BAABQS010000000   4279145 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Haloarcula japonica strain NBRC 101032, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAABQS000000000
VERSION     NZ_BAABQS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00539702
            Assembly: GCF_039545195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula japonica
  ORGANISM  Haloarcula japonica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Ichikawa,N., Katano-Makiyama,Y. and Hidaka,K.
  TITLE     Haloarcula japonica NBRC 101032
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4279145)
  AUTHORS   Ichikawa,N., Katano-Makiyama,Y. and Uohara,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2024) Contact:Director-General Biological
            Resource Center National Institute of Technology and Evaluation;
            2-49-10 Nishihara, Shibuya-ku 151-0066, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAABQS000000000.1.
            The Haloarcula japonica whole genome shotgun (WGS) project has the
            project accession NZ_BAABQS000000000.  This version of the project
            (01) has the accession number NZ_BAABQS010000000, and consists of
            sequences BAABQS010000001-BAABQS010000028.
            Annotated by prokka v.1.14.5
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Spades v. 3.15.2
            Genome Coverage       :: 534x
            Sequencing Technology :: NextSeq2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039545195.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 12:18:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,289
            Genes (coding)                    :: 4,201
            CDSs (with protein)               :: 4,201
            Genes (RNA)                       :: 57
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 46 of 88
            Pseudo Genes (incomplete)         :: 60 of 88
            Pseudo Genes (internal stop)      :: 33 of 88
            Pseudo Genes (multiple problems)  :: 38 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4279145
                     /organism="Haloarcula japonica"
                     /mol_type="genomic DNA"
                     /strain="NBRC 101032"
                     /isolation_source="Saltern soil"
                     /culture_collection="NBRC:101032"
                     /type_material="type strain of Haloarcula japonica"
                     /db_xref="taxon:29282"
                     /geo_loc_name="Japan:Ishikawa, Noto Peninsula"
WGS         BAABQS010000001-BAABQS010000028
WGS_SCAFLD  NZ_BAABQS010000001-NZ_BAABQS010000028
//
LOCUS       NZ_BAABRG010000000   3890693 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Haloarcula hispanica strain NBRC 102182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAABRG000000000
VERSION     NZ_BAABRG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00540181
            Assembly: GCF_039545215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula hispanica
  ORGANISM  Haloarcula hispanica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1
  AUTHORS   Ichikawa,N., Katano-Makiyama,Y. and Hidaka,K.
  TITLE     Haloarcula hispanica NBRC 102182
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3890693)
  AUTHORS   Ichikawa,N., Katano-Makiyama,Y. and Uohara,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2024) Contact:Director-General Biological
            Resource Center National Institute of Technology and Evaluation;
            2-49-10 Nishihara, Shibuya-ku 151-0066, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAABRG000000000.1.
            The Haloarcula hispanica whole genome shotgun (WGS) project has the
            project accession NZ_BAABRG000000000.  This version of the project
            (01) has the accession number NZ_BAABRG010000000, and consists of
            sequences BAABRG010000001-BAABRG010000014.
            Annotated by prokka v.1.14.5
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Spades v. 3.15.2
            Genome Coverage       :: 428x
            Sequencing Technology :: NextSeq2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039545215.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 12:19:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,961
            CDSs (total)                      :: 3,901
            Genes (coding)                    :: 3,838
            CDSs (with protein)               :: 3,838
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 20 of 63
            Pseudo Genes (incomplete)         :: 47 of 63
            Pseudo Genes (internal stop)      :: 9 of 63
            Pseudo Genes (multiple problems)  :: 13 of 63
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3890693
                     /organism="Haloarcula hispanica"
                     /mol_type="genomic DNA"
                     /strain="NBRC 102182"
                     /isolation_source="marine saltern"
                     /culture_collection="NBRC:102182"
                     /type_material="type strain of Haloarcula hispanica"
                     /db_xref="taxon:51589"
                     /geo_loc_name="Spain:near Alicante"
WGS         BAABRG010000001-BAABRG010000014
WGS_SCAFLD  NZ_BAABRG010000001-NZ_BAABRG010000014
//
LOCUS       NZ_BAABQO010000000   2675466 bp    DNA     linear   BCT 10-MAY-2025
DEFINITION  Sulfurisphaera tokodaii strain NBRC 100140, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAABQO000000000
VERSION     NZ_BAABQO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00539374
            Assembly: GCF_039545175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfurisphaera tokodaii
  ORGANISM  Sulfurisphaera tokodaii
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfurisphaera.
REFERENCE   1
  AUTHORS   Ichikawa,N., Katano-Makiyama,Y. and Hidaka,K.
  TITLE     Sulfurisphaera tokodaii NBRC 100140
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2675466)
  AUTHORS   Ichikawa,N., Katano-Makiyama,Y. and Uohara,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2024) Contact:Director-General Biological
            Resource Center National Institute of Technology and Evaluation;
            2-49-10 Nishihara, Shibuya-ku 151-0066, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAABQO000000000.1.
            The Sulfurisphaera tokodaii whole genome shotgun (WGS) project has
            the project accession NZ_BAABQO000000000.  This version of the
            project (01) has the accession number NZ_BAABQO010000000, and
            consists of sequences BAABQO010000001-BAABQO010000042.
            Annotated by prokka v.1.14.5
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Spades v. 3.15.2
            Genome Coverage       :: 668x
            Sequencing Technology :: NextSeq2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039545175.1-RS_2025_05_10
            Annotation Date                   :: 05/10/2025 12:14:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,034
            CDSs (total)                      :: 2,983
            Genes (coding)                    :: 2,857
            CDSs (with protein)               :: 2,857
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 61 of 126
            Pseudo Genes (incomplete)         :: 84 of 126
            Pseudo Genes (internal stop)      :: 13 of 126
            Pseudo Genes (multiple problems)  :: 27 of 126
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675466
                     /organism="Sulfurisphaera tokodaii"
                     /mol_type="genomic DNA"
                     /strain="NBRC 100140"
                     /isolation_source="Beppu hot springs"
                     /culture_collection="NBRC:100140"
                     /type_material="type strain of Sulfolobus tokodaii"
                     /db_xref="taxon:111955"
                     /geo_loc_name="Japan:Oita, Beppu"
                     /collection_date="1983"
WGS         BAABQO010000001-BAABQO010000042
WGS_SCAFLD  NZ_BAABQO010000001-NZ_BAABQO010000042
//
LOCUS       NZ_AEXL02000000      1572957 bp    DNA     linear   BCT 11-MAY-2025
DEFINITION  Candidatus Nitrosopumilus salarius BD31, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AEXL00000000
VERSION     NZ_AEXL00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00016669
            Assembly: GCF_000242875.2
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosopumilus salarius BD31
  ORGANISM  Candidatus Nitrosopumilus salarius BD31
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1572957)
  AUTHORS   Mosier,A.C., Allen,E.E., Kim,M., Ferriera,S. and Francis,C.A.
  TITLE     Genome sequence of 'Candidatus Nitrosopumilus salaria' BD31, an
            ammonia-oxidizing archaeon from the San Francisco Bay estuary
  JOURNAL   J Bacteriol 194 (8), 2121-2122 (2012)
   PUBMED   22461555
REFERENCE   2  (bases 1 to 1572957)
  AUTHORS   Francis,C., Mosier,A.C., Ferriera,S., Johnson,J., Kim,M.,
            Montgomery,R., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H.,
            Friedman,R., Frazier,M. and Venter,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAY-2012) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
REFERENCE   3  (bases 1 to 1572957)
  AUTHORS   Francis,C., Mosier,A.C., Ferriera,S., Johnson,J., Kim,M.,
            Montgomery,R., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H.,
            Friedman,R., Frazier,M. and Venter,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2010) The J. Craig Venter Institute, 9704 Medical
            Center Dr., Rockville, MD 20850, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEXL00000000.2.
            
            On May 10, 2012 this sequence version replaced NZ_AEXL00000000.1.
            The Candidatus Nitrosopumilus salarius BD31 whole genome shotgun
            (WGS) project has the project accession NZ_AEXL00000000.  This
            version of the project (02) has the accession number
            NZ_AEXL02000000, and consists of sequences
            AEXL02000001-AEXL02000171.
            Source DNA available from JCVI.
            With funding from the Gordon and Betty Moore Foundation
            (www.moore.org), the J. Craig Venter Institute (www.jcvi.org) is
            sequencing, assembling, and auto-annotating the genomes of
            approximately 165 marine microbes. These microbes were contributed
            by collaborators worldwide, and embody an array of physiological
            diversity, including carbon fixers, photoautotrophs,
            photoheterotrophs, nitrifiers, and methanotrophs. This work was
            designed to complement other ongoing research at JCVI and elsewhere
            to characterize the microbial biodiversity of marine and
            terrestrial environments through metagenomics profiling of
            environmental samples.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.23
            Genome Coverage       :: 99x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000242875.2-RS_2025_05_11
            Annotation Date                   :: 05/11/2025 08:01:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,980
            CDSs (total)                      :: 1,936
            Genes (coding)                    :: 1,864
            CDSs (with protein)               :: 1,864
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 20 of 72
            Pseudo Genes (incomplete)         :: 55 of 72
            Pseudo Genes (internal stop)      :: 0 of 72
            Pseudo Genes (multiple problems)  :: 3 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572957
                     /organism="Candidatus Nitrosopumilus salarius BD31"
                     /mol_type="genomic DNA"
                     /strain="BD31"
                     /isolation_source="coastal/estuarine sediments"
                     /db_xref="taxon:859350"
                     /geo_loc_name="USA: CA"
WGS         AEXL02000001-AEXL02000171
WGS_SCAFLD  NZ_AEXL02000001-NZ_AEXL02000171
//
LOCUS       NZ_BSDU01000000      2742458 bp    DNA     linear   BCT 11-MAY-2025
DEFINITION  Methanoculleus bourgensis strain BZM, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BSDU00000000
VERSION     NZ_BSDU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00564996
            Assembly: GCF_027925405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus bourgensis
  ORGANISM  Methanoculleus bourgensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1
  AUTHORS   Sekiguchi,Y. and Tourlousse,D.M.
  TITLE     Reference genome sequencing for broad-spectrum identification of
            bacterial and archaeal isolates by mass spectrometry
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2742458)
  AUTHORS   Sekiguchi,Y. and Tourlousse,D.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2022) Contact:Yuji Sekiguchi National Institute
            of Advanced Industrial Science and Technology (AIST); Higashi
            1-1-1, Tsukuba, Ibaraki 305-8566, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BSDU00000000.1.
            The Methanoculleus bourgensis whole genome shotgun (WGS) project
            has the project accession NZ_BSDU00000000.  This version of the
            project (01) has the accession number NZ_BSDU01000000, and consists
            of sequences BSDU01000001-BSDU01000004.
            Annotated by DFAST v.1.2.14 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Flye v. 2.9
            Genome Coverage       :: 250x
            Sequencing Technology :: ONT MinION; Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027925405.1-RS_2025_05_11
            Annotation Date                   :: 05/11/2025 11:22:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,693
            CDSs (total)                      :: 2,641
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 2 of 15
            Pseudo Genes (incomplete)         :: 14 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            Pseudo Genes (multiple problems)  :: 1 of 15
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2742458
                     /organism="Methanoculleus bourgensis"
                     /mol_type="genomic DNA"
                     /strain="BZM"
                     /isolation_source="anaerobic sludge [ENVO:00002129]"
                     /db_xref="taxon:83986"
                     /collection_date="1990"
WGS         BSDU01000001-BSDU01000004
WGS_SCAFLD  NZ_BSDU01000001-NZ_BSDU01000004
//
LOCUS       NZ_BSDL01000000      3096391 bp    DNA     linear   BCT 11-MAY-2025
DEFINITION  Methanosarcina thermophila MST-A1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BSDL00000000
VERSION     NZ_BSDL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00564987
            Assembly: GCF_027925105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanosarcina thermophila MST-A1
  ORGANISM  Methanosarcina thermophila MST-A1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanosarcina.
REFERENCE   1
  AUTHORS   Sekiguchi,Y. and Tourlousse,D.M.
  TITLE     Reference genome sequencing for broad-spectrum identification of
            bacterial and archaeal isolates by mass spectrometry
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3096391)
  AUTHORS   Sekiguchi,Y. and Tourlousse,D.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2022) Contact:Yuji Sekiguchi National Institute
            of Advanced Industrial Science and Technology (AIST); Higashi
            1-1-1, Tsukuba, Ibaraki 305-8566, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BSDL00000000.1.
            The Methanosarcina thermophila MST-A1 whole genome shotgun (WGS)
            project has the project accession NZ_BSDL00000000.  This version of
            the project (01) has the accession number NZ_BSDL01000000, and
            consists of sequences BSDL01000001-BSDL01000033.
            Annotated by DFAST v.1.2.14 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.13.1
            Genome Coverage       :: 240x
            Sequencing Technology :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027925105.1-RS_2025_05_11
            Annotation Date                   :: 05/11/2025 11:29:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,786
            CDSs (total)                      :: 2,722
            Genes (coding)                    :: 2,681
            CDSs (with protein)               :: 2,681
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 8 of 41
            Pseudo Genes (incomplete)         :: 31 of 41
            Pseudo Genes (internal stop)      :: 10 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096391
                     /organism="Methanosarcina thermophila MST-A1"
                     /mol_type="genomic DNA"
                     /strain="MST-A1"
                     /isolation_source="anaerobic sludge [ENVO:00002129]"
                     /db_xref="taxon:1434122"
                     /collection_date="1984"
WGS         BSDL01000001-BSDL01000033
WGS_SCAFLD  NZ_BSDL01000001-NZ_BSDL01000033
//
LOCUS       NZ_JAIWHV010000000   4533468 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Saliphagus infecundisoli strain YIM 93745, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAIWHV000000000
VERSION     NZ_JAIWHV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21542746
            Assembly: GCF_020177375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Saliphagus infecundisoli
  ORGANISM  Saliphagus infecundisoli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Saliphagus.
REFERENCE   1  (bases 1 to 4533468)
  AUTHORS   Yin,X.Q., Liu,B.B., Chu,X., Salam,N., Li,X., Yang,Z.W., Zhang,Y.,
            Xiao,M. and Li,W.J.
  TITLE     Saliphagus infecundisoli gen. nov., sp. nov., an extremely
            halophilic archaeon isolated from a saline soil
  JOURNAL   Int J Syst Evol Microbiol 67 (10), 4154-4160 (2017)
   PUBMED   28905703
REFERENCE   2  (bases 1 to 4533468)
  AUTHORS   Liu,B. and Yin,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2021) School of Biological and Chemical
            Engineering, Nanyang Institute of Technology, No. 80, Changjiang
            West Road, Nanyang 473004, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIWHV000000000.1.
            The Saliphagus infecundisoli whole genome shotgun (WGS) project has
            the project accession NZ_JAIWHV000000000.  This version of the
            project (01) has the accession number NZ_JAIWHV010000000, and
            consists of sequences JAIWHV010000001-JAIWHV010000076.
            Bacteria and source DNA available from culture collection
            identifier.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 10-AUG-2017
            Assembly Method        :: SPAdes v. Aug-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020177375.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 09:42:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,655
            CDSs (total)                      :: 4,589
            Genes (coding)                    :: 4,401
            CDSs (with protein)               :: 4,401
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 188
            CDSs (without protein)            :: 188
            Pseudo Genes (ambiguous residues) :: 0 of 188
            Pseudo Genes (frameshifted)       :: 71 of 188
            Pseudo Genes (incomplete)         :: 156 of 188
            Pseudo Genes (internal stop)      :: 33 of 188
            Pseudo Genes (multiple problems)  :: 59 of 188
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4533468
                     /organism="Saliphagus infecundisoli"
                     /mol_type="genomic DNA"
                     /strain="YIM 93745"
                     /isolation_source="soil"
                     /culture_collection="YIM:93745"
                     /type_material="type strain of Saliphagus infecundisoli"
                     /db_xref="taxon:1849069"
                     /geo_loc_name="China: Loulan"
                     /lat_lon="40.14 N 90.16 E"
                     /altitude="776 m"
                     /collection_date="2017-05-30"
WGS         JAIWHV010000001-JAIWHV010000076
WGS_SCAFLD  NZ_JAIWHV010000001-NZ_JAIWHV010000076
//
LOCUS       NZ_JAHUQE010000000   4125289 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Natrinema longum strain JCM 13563, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAHUQE000000000
VERSION     NZ_JAHUQE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20093900
            Assembly: GCF_020105915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema longum
  ORGANISM  Natrinema longum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4125289)
  AUTHORS   De La Haba,R., Minegishi,H., Kamekura,M. and Ventosa,A.
  TITLE     Phylogenomics of haloarchaea: the controversy of the genera
            Natrinema and Haloterrigena
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4125289)
  AUTHORS   De La Haba,R., Minegishi,H., Kamekura,M. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2021) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHUQE000000000.1.
            The Natrinema longum whole genome shotgun (WGS) project has the
            project accession NZ_JAHUQE000000000.  This version of the project
            (01) has the accession number NZ_JAHUQE010000000, and consists of
            sequences JAHUQE010000001-JAHUQE010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 78.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020105915.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 09:44:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,112
            CDSs (total)                      :: 4,059
            Genes (coding)                    :: 3,968
            CDSs (with protein)               :: 3,968
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 48 of 91
            Pseudo Genes (incomplete)         :: 59 of 91
            Pseudo Genes (internal stop)      :: 20 of 91
            Pseudo Genes (multiple problems)  :: 31 of 91
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125289
                     /organism="Natrinema longum"
                     /mol_type="genomic DNA"
                     /strain="JCM 13563"
                     /culture_collection="JCM:13563"
                     /db_xref="taxon:370324"
                     /geo_loc_name="Japan"
                     /collection_date="2019"
WGS         JAHUQE010000001-JAHUQE010000006
WGS_SCAFLD  NZ_JAHUQE010000001-NZ_JAHUQE010000006
//
LOCUS       NZ_JAJNEG010000000   3550491 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum lacusprofundi strain HL1RP11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJNEG000000000
VERSION     NZ_JAJNEG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23457007
            Assembly: GCF_021965275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum lacusprofundi
  ORGANISM  Halorubrum lacusprofundi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3550491)
  AUTHORS   Mukhtar,S., Mehnaz,S. and Malik,K.A.
  TITLE     Identification and characterization of haloarchaea from the
            rhizosphere of halophytes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3550491)
  AUTHORS   Mukhtar,S., Mehnaz,S. and Malik,K.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2021) School of Life Sciences, Forman Christian
            College, Ferozpur Road, Lahore, Punjab 54600, Pakistan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJNEG000000000.1.
            The Halorubrum lacusprofundi whole genome shotgun (WGS) project has
            the project accession NZ_JAJNEG000000000.  This version of the
            project (01) has the accession number NZ_JAJNEG010000000, and
            consists of sequences JAJNEG010000001-JAJNEG010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Salma Mukhtar, School of
            Biological Sciences, University of the Punjab, Lahore 54590,
            Pakistan.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2021
            Assembly Method        :: SPAdes v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021965275.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 09:44:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,604
            CDSs (total)                      :: 3,549
            Genes (coding)                    :: 3,436
            CDSs (with protein)               :: 3,436
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 33 of 113
            Pseudo Genes (incomplete)         :: 89 of 113
            Pseudo Genes (internal stop)      :: 12 of 113
            Pseudo Genes (multiple problems)  :: 19 of 113
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3550491
                     /organism="Halorubrum lacusprofundi"
                     /mol_type="genomic DNA"
                     /strain="HL1RP11"
                     /host="Salsola stocksii"
                     /db_xref="taxon:2247"
                     /geo_loc_name="Pakistan: Punjab"
                     /collection_date="2015-02-22"
WGS         JAJNEG010000001-JAJNEG010000042
WGS_SCAFLD  NZ_JAJNEG010000001-NZ_JAJNEG010000042
//
LOCUS       NZ_JAJCVJ010000000   4055248 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Salinirubrum litoreum strain XD46, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAJCVJ000000000
VERSION     NZ_JAJCVJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22374875
            Assembly: GCF_020567425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinirubrum litoreum
  ORGANISM  Salinirubrum litoreum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Salinirubrum.
REFERENCE   1  (bases 1 to 4055248)
  AUTHORS   Cui,H.-L.
  TITLE     Halophilic archaea isolated from solar salterns and salt lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4055248)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2021) School of Food and Biological Engineering,
            Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJCVJ000000000.1.
            The Salinirubrum litoreum whole genome shotgun (WGS) project has
            the project accession NZ_JAJCVJ000000000.  This version of the
            project (01) has the accession number NZ_JAJCVJ010000000, and
            consists of sequences JAJCVJ010000001-JAJCVJ010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020567425.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 09:47:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,993
            CDSs (total)                      :: 3,941
            Genes (coding)                    :: 3,907
            CDSs (with protein)               :: 3,907
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 5 of 34
            Pseudo Genes (incomplete)         :: 30 of 34
            Pseudo Genes (internal stop)      :: 2 of 34
            Pseudo Genes (multiple problems)  :: 3 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4055248
                     /organism="Salinirubrum litoreum"
                     /mol_type="genomic DNA"
                     /strain="XD46"
                     /isolation_source="saline soil"
                     /type_material="type strain of Salinirubrum litoreum"
                     /db_xref="taxon:1126234"
                     /geo_loc_name="China: Fujian"
                     /collection_date="2010-06"
WGS         JAJCVJ010000001-JAJCVJ010000005
WGS_SCAFLD  NZ_JAJCVJ010000001-NZ_JAJCVJ010000005
//
LOCUS       NZ_JALLPL010000000   2941515 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Haloplanus halobius strain XH21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLPL000000000
VERSION     NZ_JALLPL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27554576
            Assembly: GCF_023276355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus halobius
  ORGANISM  Haloplanus halobius
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 2941515)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2941515)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-APR-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLPL000000000.1.
            The Haloplanus halobius whole genome shotgun (WGS) project has the
            project accession NZ_JALLPL000000000.  This version of the project
            (01) has the accession number NZ_JALLPL010000000, and consists of
            sequences JALLPL010000001-JALLPL010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 524.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023276355.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:20:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,145
            CDSs (total)                      :: 3,065
            Genes (coding)                    :: 2,977
            CDSs (with protein)               :: 2,977
            Genes (RNA)                       :: 80
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 33 of 88
            Pseudo Genes (incomplete)         :: 67 of 88
            Pseudo Genes (internal stop)      :: 12 of 88
            Pseudo Genes (multiple problems)  :: 20 of 88
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941515
                     /organism="Haloplanus halobius"
                     /mol_type="genomic DNA"
                     /strain="XH21"
                     /isolation_source="salt"
                     /type_material="type strain of Haloplanus halobius"
                     /db_xref="taxon:2934938"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2018-03"
WGS         JALLPL010000001-JALLPL010000003
WGS_SCAFLD  NZ_JALLPL010000001-NZ_JALLPL010000003
//
LOCUS       NZ_JANHAW010000000   3857234 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halobellus litoreus strain GX31, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHAW000000000
VERSION     NZ_JANHAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29883267
            Assembly: GCF_024464595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus litoreus
  ORGANISM  Halobellus litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3857234)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3857234)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHAW000000000.1.
            The Halobellus litoreus whole genome shotgun (WGS) project has the
            project accession NZ_JANHAW000000000.  This version of the project
            (01) has the accession number NZ_JANHAW010000000, and consists of
            sequences JANHAW010000001-JANHAW010000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 145.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024464595.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:25:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,781
            CDSs (total)                      :: 3,725
            Genes (coding)                    :: 3,655
            CDSs (with protein)               :: 3,655
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 25 of 70
            Pseudo Genes (incomplete)         :: 51 of 70
            Pseudo Genes (internal stop)      :: 17 of 70
            Pseudo Genes (multiple problems)  :: 20 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3857234
                     /organism="Halobellus litoreus"
                     /mol_type="genomic DNA"
                     /strain="GX31"
                     /isolation_source="Gangxi marine solar saltern"
                     /type_material="type strain of Halobellus litoreus"
                     /db_xref="taxon:755310"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2009-06-01"
WGS         JANHAW010000001-JANHAW010000010
WGS_SCAFLD  NZ_JANHAW010000001-NZ_JANHAW010000010
//
LOCUS       NZ_JANHDO010000000   2727534 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum salinum strain GX71, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHDO000000000
VERSION     NZ_JANHDO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29911665
            Assembly: GCF_024494575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum salinum
  ORGANISM  Halorubrum salinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 2727534)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2727534)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDO000000000.1.
            The Halorubrum salinum whole genome shotgun (WGS) project has the
            project accession NZ_JANHDO000000000.  This version of the project
            (01) has the accession number NZ_JANHDO010000000, and consists of
            sequences JANHDO010000001-JANHDO010000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 209.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024494575.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:22:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,813
            CDSs (total)                      :: 2,758
            Genes (coding)                    :: 2,733
            CDSs (with protein)               :: 2,733
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 20 of 25
            Pseudo Genes (internal stop)      :: 5 of 25
            Pseudo Genes (multiple problems)  :: 5 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2727534
                     /organism="Halorubrum salinum"
                     /mol_type="genomic DNA"
                     /strain="GX71"
                     /isolation_source="marine solar saltern"
                     /type_material="type strain of Halorubrum salinum"
                     /db_xref="taxon:767517"
                     /geo_loc_name="China: Shandong, Gangxi"
                     /collection_date="2009-02"
WGS         JANHDO010000001-JANHDO010000006
WGS_SCAFLD  NZ_JANHDO010000001-NZ_JANHDO010000006
//
LOCUS       NZ_JANHGR010000000   3024386 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halolamina litorea strain YJ-41, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHGR000000000
VERSION     NZ_JANHGR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29923289
            Assembly: GCF_026616205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina litorea
  ORGANISM  Halolamina litorea
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 3024386)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3024386)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHGR000000000.1.
            The Halolamina litorea whole genome shotgun (WGS) project has the
            project accession NZ_JANHGR000000000.  This version of the project
            (01) has the accession number NZ_JANHGR010000000, and consists of
            sequences JANHGR010000001-JANHGR010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 185.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026616205.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:26:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,147
            CDSs (total)                      :: 3,093
            Genes (coding)                    :: 3,078
            CDSs (with protein)               :: 3,078
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 14 of 15
            Pseudo Genes (internal stop)      :: 0 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024386
                     /organism="Halolamina litorea"
                     /mol_type="genomic DNA"
                     /strain="YJ-41"
                     /isolation_source="Yangjiang marine solar saltern"
                     /type_material="type strain of Halolamina litorea"
                     /db_xref="taxon:1515593"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2012-10"
WGS         JANHGR010000001-JANHGR010000004
WGS_SCAFLD  NZ_JANHGR010000001-NZ_JANHGR010000004
//
LOCUS       NZ_JANHDI010000000   3655138 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halobellus rarus strain YC21, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHDI000000000
VERSION     NZ_JANHDI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29911640
            Assembly: GCF_024494595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus rarus
  ORGANISM  Halobellus rarus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3655138)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3655138)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDI000000000.1.
            The Halobellus rarus whole genome shotgun (WGS) project has the
            project accession NZ_JANHDI000000000.  This version of the project
            (01) has the accession number NZ_JANHDI010000000, and consists of
            sequences JANHDI010000001-JANHDI010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 120.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024494595.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:31:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,597
            CDSs (total)                      :: 3,540
            Genes (coding)                    :: 3,468
            CDSs (with protein)               :: 3,468
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 23 of 72
            Pseudo Genes (incomplete)         :: 54 of 72
            Pseudo Genes (internal stop)      :: 14 of 72
            Pseudo Genes (multiple problems)  :: 16 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3655138
                     /organism="Halobellus rarus"
                     /mol_type="genomic DNA"
                     /strain="YC21"
                     /isolation_source="salt lake"
                     /type_material="type strain of Halobellus rarus"
                     /db_xref="taxon:1126237"
                     /geo_loc_name="China: Shanxi, Yuncheng"
                     /collection_date="2010-06"
WGS         JANHDI010000001-JANHDI010000025
WGS_SCAFLD  NZ_JANHDI010000001-NZ_JANHDI010000025
//
LOCUS       NZ_JANHDL010000000   3621885 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum laminariae strain R60, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANHDL000000000
VERSION     NZ_JANHDL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29911662
            Assembly: GCF_024494655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum laminariae
  ORGANISM  Halorubrum laminariae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3621885)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3621885)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDL000000000.1.
            The Halorubrum laminariae whole genome shotgun (WGS) project has
            the project accession NZ_JANHDL000000000.  This version of the
            project (01) has the accession number NZ_JANHDL010000000, and
            consists of sequences JANHDL010000001-JANHDL010000042.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 157.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024494655.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:27:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,713
            CDSs (total)                      :: 3,656
            Genes (coding)                    :: 3,544
            CDSs (with protein)               :: 3,544
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 31 of 112
            Pseudo Genes (incomplete)         :: 91 of 112
            Pseudo Genes (internal stop)      :: 18 of 112
            Pseudo Genes (multiple problems)  :: 27 of 112
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621885
                     /organism="Halorubrum laminariae"
                     /mol_type="genomic DNA"
                     /strain="R60"
                     /isolation_source="aquaculture farm"
                     /type_material="type strain of Halorubrum laminariae"
                     /db_xref="taxon:1433523"
                     /geo_loc_name="China: Dalian, Liaoning"
                     /collection_date="2009-09"
WGS         JANHDL010000001-JANHDL010000042
WGS_SCAFLD  NZ_JANHDL010000001-NZ_JANHDL010000042
//
LOCUS       NZ_JAQMRR010000000   3498569 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRR000000000
VERSION     NZ_JAQMRR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800016
            Assembly: GCF_028329925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3498569)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3498569)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRR000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRR000000000.  This version of the
            project (01) has the accession number NZ_JAQMRR010000000, and
            consists of sequences JAQMRR010000001-JAQMRR010000039.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028329925.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:33:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,628
            CDSs (total)                      :: 3,560
            Genes (coding)                    :: 3,451
            CDSs (with protein)               :: 3,451
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 34 of 109
            Pseudo Genes (incomplete)         :: 84 of 109
            Pseudo Genes (internal stop)      :: 14 of 109
            Pseudo Genes (multiple problems)  :: 21 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3498569
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_3"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRR010000001-JAQMRR010000039
WGS_SCAFLD  NZ_JAQMRR010000001-NZ_JAQMRR010000039
//
LOCUS       NZ_JAQMRY010000000   3504515 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_115, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRY000000000
VERSION     NZ_JAQMRY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800009
            Assembly: GCF_028330485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3504515)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3504515)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRY000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRY000000000.  This version of the
            project (01) has the accession number NZ_JAQMRY010000000, and
            consists of sequences JAQMRY010000001-JAQMRY010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028330485.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:33:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,639
            CDSs (total)                      :: 3,571
            Genes (coding)                    :: 3,456
            CDSs (with protein)               :: 3,456
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 34 of 115
            Pseudo Genes (incomplete)         :: 90 of 115
            Pseudo Genes (internal stop)      :: 14 of 115
            Pseudo Genes (multiple problems)  :: 21 of 115
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504515
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_115"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRY010000001-JAQMRY010000052
WGS_SCAFLD  NZ_JAQMRY010000001-NZ_JAQMRY010000052
//
LOCUS       NZ_JAQMRU010000000   3455477 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRU000000000
VERSION     NZ_JAQMRU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800013
            Assembly: GCF_028329825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3455477)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3455477)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRU000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRU000000000.  This version of the
            project (01) has the accession number NZ_JAQMRU010000000, and
            consists of sequences JAQMRU010000001-JAQMRU010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028329825.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:34:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,478
            CDSs (total)                      :: 3,426
            Genes (coding)                    :: 3,330
            CDSs (with protein)               :: 3,330
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 37 of 96
            Pseudo Genes (incomplete)         :: 68 of 96
            Pseudo Genes (internal stop)      :: 25 of 96
            Pseudo Genes (multiple problems)  :: 28 of 96
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3455477
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_23"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRU010000001-JAQMRU010000025
WGS_SCAFLD  NZ_JAQMRU010000001-NZ_JAQMRU010000025
//
LOCUS       NZ_JAQMRO010000000   3502197 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_82, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRO000000000
VERSION     NZ_JAQMRO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800019
            Assembly: GCF_028328625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3502197)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3502197)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRO000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRO000000000.  This version of the
            project (01) has the accession number NZ_JAQMRO010000000, and
            consists of sequences JAQMRO010000001-JAQMRO010000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028328625.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:35:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,631
            CDSs (total)                      :: 3,562
            Genes (coding)                    :: 3,453
            CDSs (with protein)               :: 3,453
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 34 of 109
            Pseudo Genes (incomplete)         :: 84 of 109
            Pseudo Genes (internal stop)      :: 14 of 109
            Pseudo Genes (multiple problems)  :: 21 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3502197
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_82"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRO010000001-JAQMRO010000043
WGS_SCAFLD  NZ_JAQMRO010000001-NZ_JAQMRO010000043
//
LOCUS       NZ_JAQMRQ010000000   3456084 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_66, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRQ000000000
VERSION     NZ_JAQMRQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800017
            Assembly: GCF_028328665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3456084)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3456084)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRQ000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRQ000000000.  This version of the
            project (01) has the accession number NZ_JAQMRQ010000000, and
            consists of sequences JAQMRQ010000001-JAQMRQ010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028328665.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:38:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,484
            CDSs (total)                      :: 3,432
            Genes (coding)                    :: 3,333
            CDSs (with protein)               :: 3,333
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 39 of 99
            Pseudo Genes (incomplete)         :: 70 of 99
            Pseudo Genes (internal stop)      :: 26 of 99
            Pseudo Genes (multiple problems)  :: 30 of 99
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3456084
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_66"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRQ010000001-JAQMRQ010000022
WGS_SCAFLD  NZ_JAQMRQ010000001-NZ_JAQMRQ010000022
//
LOCUS       NZ_JAQMRZ010000000   3515169 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_114, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRZ000000000
VERSION     NZ_JAQMRZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800008
            Assembly: GCF_028330605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3515169)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3515169)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRZ000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRZ000000000.  This version of the
            project (01) has the accession number NZ_JAQMRZ010000000, and
            consists of sequences JAQMRZ010000001-JAQMRZ010000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028330605.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:39:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,658
            CDSs (total)                      :: 3,590
            Genes (coding)                    :: 3,472
            CDSs (with protein)               :: 3,472
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 34 of 118
            Pseudo Genes (incomplete)         :: 93 of 118
            Pseudo Genes (internal stop)      :: 14 of 118
            Pseudo Genes (multiple problems)  :: 21 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3515169
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_114"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRZ010000001-JAQMRZ010000051
WGS_SCAFLD  NZ_JAQMRZ010000001-NZ_JAQMRZ010000051
//
LOCUS       NZ_JAQMRM010000000   3744503 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_96, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMRM000000000
VERSION     NZ_JAQMRM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800021
            Assembly: GCF_028329875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3744503)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3744503)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMRM000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMRM000000000.  This version of the
            project (01) has the accession number NZ_JAQMRM010000000, and
            consists of sequences JAQMRM010000001-JAQMRM010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028329875.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:39:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,819
            CDSs (total)                      :: 3,752
            Genes (coding)                    :: 3,626
            CDSs (with protein)               :: 3,626
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 32 of 126
            Pseudo Genes (incomplete)         :: 100 of 126
            Pseudo Genes (internal stop)      :: 22 of 126
            Pseudo Genes (multiple problems)  :: 23 of 126
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3744503
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_96"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMRM010000001-JAQMRM010000080
WGS_SCAFLD  NZ_JAQMRM010000001-NZ_JAQMRM010000080
//
LOCUS       NZ_JAQMSC010000000   3530821 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum ezzemoulense strain UG_101, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMSC000000000
VERSION     NZ_JAQMSC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32800005
            Assembly: GCF_028330625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3530821)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from the Dead Sea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3530821)
  AUTHORS   Feng,Y., Louyakis,A. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMSC000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQMSC000000000.  This version of the
            project (01) has the accession number NZ_JAQMSC010000000, and
            consists of sequences JAQMSC010000001-JAQMSC010000057.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028330625.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 10:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,613
            CDSs (total)                      :: 3,545
            Genes (coding)                    :: 3,430
            CDSs (with protein)               :: 3,430
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 21 of 115
            Pseudo Genes (incomplete)         :: 92 of 115
            Pseudo Genes (internal stop)      :: 23 of 115
            Pseudo Genes (multiple problems)  :: 20 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3530821
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="UG_101"
                     /isolation_source="from water in the Dead Sea"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Israel: Dead Sea"
                     /collection_date="2018-10"
WGS         JAQMSC010000001-JAQMSC010000057
WGS_SCAFLD  NZ_JAQMSC010000001-NZ_JAQMSC010000057
//
LOCUS       NZ_FXTR01000000      3067455 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halobellus salinus strain DSM 18730, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FXTR00000000
VERSION     NZ_FXTR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06265347
            Assembly: GCF_900182765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus salinus
  ORGANISM  Halobellus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3067455)
  AUTHORS   Varghese,N. and Submissions,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2017) DOE - JOINT GENOME INSTITUTE, LBNL, 2800
            Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FXTR00000000.1.
            The Halobellus salinus whole genome shotgun (WGS) project has the
            project accession NZ_FXTR00000000.  This version of the project
            (01) has the accession number NZ_FXTR01000000, and consists of
            sequences FXTR01000001-FXTR01000037.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900182765.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 11:10:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,043
            CDSs (total)                      :: 2,982
            Genes (coding)                    :: 2,886
            CDSs (with protein)               :: 2,886
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 22 of 96
            Pseudo Genes (incomplete)         :: 79 of 96
            Pseudo Genes (internal stop)      :: 21 of 96
            Pseudo Genes (multiple problems)  :: 22 of 96
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067455
                     /organism="Halobellus salinus"
                     /mol_type="genomic DNA"
                     /strain="DSM 18730"
                     /type_material="type strain of Halobellus salinus"
                     /db_xref="taxon:931585"
WGS         FXTR01000001-FXTR01000037
WGS_SCAFLD  NZ_FXTR01000001-NZ_FXTR01000037
//
LOCUS       NZ_JAYEZO010000000   3229908 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halobellus salinisoli strain LT62, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAYEZO000000000
VERSION     NZ_JAYEZO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38878163
            Assembly: GCF_037031285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus salinisoli
  ORGANISM  Halobellus salinisoli
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3229908)
  AUTHORS   Cui,H.-L.
  TITLE     Halobellus salinisoli sp. nov., isolated from an inland
            saline-alkali soli
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3229908)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2023) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYEZO000000000.1.
            The Halobellus salinisoli whole genome shotgun (WGS) project has
            the project accession NZ_JAYEZO000000000.  This version of the
            project (01) has the accession number NZ_JAYEZO010000000, and
            consists of sequences JAYEZO010000001-JAYEZO010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 164.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037031285.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 11:57:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,164
            CDSs (total)                      :: 3,108
            Genes (coding)                    :: 3,041
            CDSs (with protein)               :: 3,041
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 19 of 67
            Pseudo Genes (incomplete)         :: 53 of 67
            Pseudo Genes (internal stop)      :: 11 of 67
            Pseudo Genes (multiple problems)  :: 15 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229908
                     /organism="Halobellus salinisoli"
                     /mol_type="genomic DNA"
                     /strain="LT62"
                     /isolation_source="sediment"
                     /type_material="type strain of Halobellus salinisoli"
                     /db_xref="taxon:3108500"
                     /geo_loc_name="China: Xinjiang"
                     /collection_date="2013-10"
WGS         JAYEZO010000001-JAYEZO010000003
WGS_SCAFLD  NZ_JAYEZO010000001-NZ_JAYEZO010000003
//
LOCUS       NZ_JAVQKJ010000000   4200409 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halobellus ordinarius strain ZY16, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAVQKJ000000000
VERSION     NZ_JAVQKJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37368141
            Assembly: GCF_031823395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus ordinarius
  ORGANISM  Halobellus ordinarius
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 4200409)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4200409)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-SEP-2023) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVQKJ000000000.1.
            The Halobellus ordinarius whole genome shotgun (WGS) project has
            the project accession NZ_JAVQKJ000000000.  This version of the
            project (01) has the accession number NZ_JAVQKJ010000000, and
            consists of sequences JAVQKJ010000001-JAVQKJ010000028.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 220.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_031823395.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 11:29:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,147
            CDSs (total)                      :: 4,090
            Genes (coding)                    :: 3,994
            CDSs (with protein)               :: 3,994
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 36 of 96
            Pseudo Genes (incomplete)         :: 77 of 96
            Pseudo Genes (internal stop)      :: 17 of 96
            Pseudo Genes (multiple problems)  :: 27 of 96
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4200409
                     /organism="Halobellus ordinarius"
                     /mol_type="genomic DNA"
                     /strain="ZY16"
                     /isolation_source="sediment"
                     /type_material="type strain of Halobellus ordinarius"
                     /db_xref="taxon:3075120"
                     /geo_loc_name="China: Jangsu"
                     /collection_date="2023-03"
WGS         JAVQKJ010000001-JAVQKJ010000028
WGS_SCAFLD  NZ_JAVQKJ010000001-NZ_JAVQKJ010000028
//
LOCUS       NZ_JAXGGM010000000   3014512 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Halorubrum lacusprofundi strain R1S1B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXGGM000000000
VERSION     NZ_JAXGGM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38507334
            Assembly: GCF_037414695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum lacusprofundi
  ORGANISM  Halorubrum lacusprofundi
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3014512)
  AUTHORS   Hamm,J.N.
  TITLE     Selective lipid recruitment by an archaeal DPANN symbiont from its
            host
  JOURNAL   Nat Commun (2024) In press
REFERENCE   2  (bases 1 to 3014512)
  AUTHORS   Hamm,J.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2023) Marine Microbiology and Biogeochemistry,
            Royal Netherlands Institute for Sea Research, Landsdiep 4, 't
            Horntje 1797SZ, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXGGM000000000.1.
            The Halorubrum lacusprofundi whole genome shotgun (WGS) project has
            the project accession NZ_JAXGGM000000000.  This version of the
            project (01) has the accession number NZ_JAXGGM010000000, and
            consists of sequences JAXGGM010000001-JAXGGM010000067.
            Bacteria and source DNA available from Evosym Team, Anja Spang,
            Netherlands Institute for Sea Research.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2022
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 800.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037414695.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 11:55:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,111
            CDSs (total)                      :: 3,056
            Genes (coding)                    :: 2,985
            CDSs (with protein)               :: 2,985
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 23 of 71
            Pseudo Genes (incomplete)         :: 52 of 71
            Pseudo Genes (internal stop)      :: 9 of 71
            Pseudo Genes (multiple problems)  :: 11 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014512
                     /organism="Halorubrum lacusprofundi"
                     /mol_type="genomic DNA"
                     /strain="R1S1B"
                     /isolation_source="water column"
                     /db_xref="taxon:2247"
                     /geo_loc_name="Antarctica: Rauer Islands"
                     /lat_lon="68.4 S 78 E"
                     /collection_date="2014"
WGS         JAXGGM010000001-JAXGGM010000067
WGS_SCAFLD  NZ_JAXGGM010000001-NZ_JAXGGM010000067
//
LOCUS       NZ_JAWSTJ010000000   3959491 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Haloferax volcanii strain CSM52, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAWSTJ000000000
VERSION     NZ_JAWSTJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37657314
            Assembly: GCF_033550185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3959491)
  AUTHORS   Thompson,T.P., Megaw,J., Fakhoury,A., Kelly,S.A. and Gilmore,B.F.
  TITLE     Draft Genome of Halorubrum saccharovorum CSM52: A Halophilic
            Archaea from Triassic Salt in Northern Ireland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3959491)
  AUTHORS   Thompson,T.P., Megaw,J., Fakhoury,A., Kelly,S.A. and Gilmore,B.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2023) School of Pharmacy, Queens University
            Belfast, School of Pharmacy, Belfast, Antrim BT9 7BL, United
            Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWSTJ000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JAWSTJ000000000.  This version of the project
            (01) has the accession number NZ_JAWSTJ010000000, and consists of
            sequences JAWSTJ010000001-JAWSTJ010000211.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from School of Pharmacy, Queen's
            University Belfast.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 92.6x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_033550185.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 11:37:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,112
            CDSs (total)                      :: 4,054
            Genes (coding)                    :: 3,850
            CDSs (with protein)               :: 3,850
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 204
            CDSs (without protein)            :: 204
            Pseudo Genes (ambiguous residues) :: 0 of 204
            Pseudo Genes (frameshifted)       :: 51 of 204
            Pseudo Genes (incomplete)         :: 156 of 204
            Pseudo Genes (internal stop)      :: 23 of 204
            Pseudo Genes (multiple problems)  :: 20 of 204
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3959491
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="CSM52"
                     /isolation_source="Saturated brine-pool"
                     /db_xref="taxon:2246"
                     /geo_loc_name="United Kingdom: Kilroot Salt Mine,
                     Carrickfergus, Northern Ireland"
                     /lat_lon="54.7281 N 5.7491 W"
                     /collection_date="2012-04"
WGS         JAWSTJ010000001-JAWSTJ010000211
WGS_SCAFLD  NZ_JAWSTJ010000001-NZ_JAWSTJ010000211
//
LOCUS       NZ_JAMQOT010000000   4787139 bp    DNA     linear   BCT 12-MAY-2025
DEFINITION  Natrinema salsiterrestre strain S1CR25-10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMQOT000000000
VERSION     NZ_JAMQOT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28864587
            Assembly: GCF_029502005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema salsiterrestre
  ORGANISM  Natrinema salsiterrestre
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 4787139)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Natrinema sp. a new haloarchaeum isolate from saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4787139)
  AUTHORS   Strakova,D., Galisteo,C., Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2022) Microbiology and Parasitology, University
            of Sevilla, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMQOT000000000.1.
            The Natrinema salsiterrestre whole genome shotgun (WGS) project has
            the project accession NZ_JAMQOT000000000.  This version of the
            project (01) has the accession number NZ_JAMQOT010000000, and
            consists of sequences JAMQOT010000001-JAMQOT010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 344.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029502005.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 11:03:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,777
            CDSs (total)                      :: 4,718
            Genes (coding)                    :: 4,631
            CDSs (with protein)               :: 4,631
            Genes (RNA)                       :: 59
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 30 of 87
            Pseudo Genes (incomplete)         :: 55 of 87
            Pseudo Genes (internal stop)      :: 26 of 87
            Pseudo Genes (multiple problems)  :: 20 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4787139
                     /organism="Natrinema salsiterrestre"
                     /mol_type="genomic DNA"
                     /strain="S1CR25-10"
                     /isolation_source="saline soil"
                     /type_material="type strain of Natrinema salsiterrestre"
                     /db_xref="taxon:2950540"
                     /geo_loc_name="Spain: Marismas del Odiel, Huelva"
                     /collection_date="2020-07-15"
                     /collected_by="Dasa Strakova"
                     /identified_by="Dasa Strakova"
WGS         JAMQOT010000001-JAMQOT010000027
WGS_SCAFLD  NZ_JAMQOT010000001-NZ_JAMQOT010000027
//
LOCUS       NZ_JBNLIA010000000   3131948 bp    DNA     linear   BCT 13-MAY-2025
DEFINITION  Haloparvum alkalitolerans strain MK62-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNLIA000000000
VERSION     NZ_JBNLIA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48203069
            Assembly: GCF_050122995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloparvum alkalitolerans
  ORGANISM  Haloparvum alkalitolerans
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloparvum.
REFERENCE   1  (bases 1 to 3131948)
  AUTHORS   Kondo,Y., Minegishi,H., Echigo,A., Shimane,Y., Kamekura,M.,
            Itoh,T., Ohkuma,M., Tanaka,A., Takahashi-Ando,N., Fukushima,Y.,
            Yoshida,Y., Ihara,K. and Usami,R.
  TITLE     Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon
            isolated from commercial salt
  JOURNAL   Int J Syst Evol Microbiol 66 (12), 5314-5319 (2016)
   PUBMED   27666573
REFERENCE   2  (bases 1 to 3131948)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNLIA000000000.1.
            The Haloparvum alkalitolerans whole genome shotgun (WGS) project
            has the project accession NZ_JBNLIA000000000.  This version of the
            project (01) has the accession number NZ_JBNLIA010000000, and
            consists of sequences JBNLIA010000001-JBNLIA010000031.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 797.54x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050122995.1-RS_2025_05_05
            Annotation Date                   :: 05/05/2025 17:03:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,089
            CDSs (total)                      :: 3,029
            Genes (coding)                    :: 3,003
            CDSs (with protein)               :: 3,003
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 3 of 26
            Pseudo Genes (incomplete)         :: 22 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131948
                     /organism="Haloparvum alkalitolerans"
                     /mol_type="genomic DNA"
                     /strain="MK62-1"
                     /isolation_source="commercial salt made from seawater"
                     /type_material="type strain of Haloparvum alkalitolerans"
                     /db_xref="taxon:1042953"
                     /geo_loc_name="Philippines"
WGS         JBNLIA010000001-JBNLIA010000031
WGS_SCAFLD  NZ_JBNLIA010000001-NZ_JBNLIA010000031
//
LOCUS       NZ_JBNOXW010000000   1804513 bp    DNA     linear   BCT 14-MAY-2025
DEFINITION  Ferroplasma acidiphilum strain ZJ, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBNOXW000000000
VERSION     NZ_JBNOXW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46122044
            Assembly: GCF_050311795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ferroplasma acidiphilum
  ORGANISM  Ferroplasma acidiphilum
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Ferroplasmaceae; Ferroplasma.
REFERENCE   1  (bases 1 to 1804513)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2025) The School of Minerals Processing and
            Bioengineering, China university of geosciences, No. 388, Lumo
            Road, Wuhan, Hubei 430074, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNOXW000000000.1.
            The Ferroplasma acidiphilum whole genome shotgun (WGS) project has
            the project accession NZ_JBNOXW000000000.  This version of the
            project (01) has the accession number NZ_JBNOXW010000000, and
            consists of sequences JBNOXW010000001-JBNOXW010000413.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from China:Fujian.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. v3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050311795.1-RS_2025_05_12
            Annotation Date                   :: 05/12/2025 13:45:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,005
            CDSs (total)                      :: 1,955
            Genes (coding)                    :: 1,886
            CDSs (with protein)               :: 1,886
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 0 of 69
            Pseudo Genes (incomplete)         :: 69 of 69
            Pseudo Genes (internal stop)      :: 1 of 69
            Pseudo Genes (multiple problems)  :: 1 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804513
                     /organism="Ferroplasma acidiphilum"
                     /mol_type="genomic DNA"
                     /strain="ZJ"
                     /isolation_source="Acid mine drainage"
                     /db_xref="taxon:74969"
                     /geo_loc_name="China: Fujian"
                     /lat_lon="25.11 N 116.25 E"
                     /collection_date="2015-05-01"
WGS         JBNOXW010000001-JBNOXW010000413
WGS_SCAFLD  NZ_JBNOXW010000001-NZ_JBNOXW010000413
//
LOCUS       NZ_CBCPLY010000000   2066055 bp    DNA     linear   BCT 14-MAY-2025
DEFINITION  Methanobrevibacter intestini isolate
            ena-SAMPLE-TAB-29-01-2025-09:49:57:662-36391, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCPLY000000000
VERSION     NZ_CBCPLY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117637322
            Assembly: GCF_965119535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter intestini
  ORGANISM  Methanobrevibacter intestini
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2066055)
  AUTHORS   Marsh,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2025) MPI Biology, Department of Microbiome
            Science, Max-Planck-Ring 5, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCPLY000000000.1.
            The Methanobrevibacter intestini whole genome shotgun (WGS) project
            has the project accession NZ_CBCPLY000000000.  This version of the
            project (01) has the accession number NZ_CBCPLY010000000, and
            consists of sequences CBCPLY010000001-CBCPLY010000006.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965119535.1-RS_2025_02_02
            Annotation Date                   :: 02/02/2025 23:56:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,931
            CDSs (total)                      :: 1,887
            Genes (coding)                    :: 1,857
            CDSs (with protein)               :: 1,857
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 13 of 30
            Pseudo Genes (incomplete)         :: 18 of 30
            Pseudo Genes (internal stop)      :: 4 of 30
            Pseudo Genes (multiple problems)  :: 4 of 30
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066055
                     /organism="Methanobrevibacter intestini"
                     /mol_type="genomic DNA"
                     /isolate="ena-SAMPLE-TAB-29-01-2025-09:49:57:662-36391"
                     /db_xref="taxon:2911853"
                     /geo_loc_name="Gabon"
                     /collection_date="2021-12"
WGS         CBCPLY010000001-CBCPLY010000006
WGS_SCAFLD  NZ_CBCPLY010000001-NZ_CBCPLY010000006
//
LOCUS       NZ_JAKUCK010000000   2175192 bp    DNA     linear   BCT 14-MAY-2025
DEFINITION  Metallosphaera sedula strain Drty7_1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKUCK000000000
VERSION     NZ_JAKUCK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26144440
            Assembly: GCF_022427045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Metallosphaera sedula
  ORGANISM  Metallosphaera sedula
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2175192)
  AUTHORS   Liu,X.
  TITLE     The genome sequence of the metal-mobilizing, extremely
            thermoacidophilic archaeon Metallosphaera sedula provides insights
            into bioleaching-associated metabolism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2175192)
  AUTHORS   Liu,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2022) ZZR Lab, SUSTech Institude of Oceanography,
            No. 1088, Xueyuan Avenue, Nanshan District, Shenzhen, Guang Dong
            518055, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKUCK000000000.1.
            The Metallosphaera sedula whole genome shotgun (WGS) project has
            the project accession NZ_JAKUCK000000000.  This version of the
            project (01) has the accession number NZ_JAKUCK010000000, and
            consists of sequences JAKUCK010000001-JAKUCK010000015.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAP denovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 141.6x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022427045.1-RS_2025_05_13
            Annotation Date                   :: 05/13/2025 10:28:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,405
            CDSs (total)                      :: 2,355
            Genes (coding)                    :: 2,326
            CDSs (with protein)               :: 2,326
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 10 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175192
                     /organism="Metallosphaera sedula"
                     /mol_type="genomic DNA"
                     /strain="Drty7_1"
                     /isolation_source="hot spring sediment"
                     /db_xref="taxon:43687"
                     /geo_loc_name="China: Tengchong Rehai"
                     /lat_lon="25.3 N 98.7 E"
                     /collection_date="2020-07"
WGS         JAKUCK010000001-JAKUCK010000015
WGS_SCAFLD  NZ_JAKUCK010000001-NZ_JAKUCK010000015
//
LOCUS       NZ_JBMFJI010000000   1561481 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Acidilobus sp. isolate KM4331-13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFJI000000000
VERSION     NZ_JBMFJI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003087
            Assembly: GCF_049973875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Acidilobus sp. (hot springs metagenome)
  ORGANISM  Acidilobus sp.
            Archaea; Thermoproteota; Thermoprotei; Acidilobales; Acidilobaceae;
            Acidilobus.
REFERENCE   1  (bases 1 to 1561481)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1561481)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFJI000000000.1.
            The Acidilobus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFJI000000000.  This version of the project
            (01) has the accession number NZ_JBMFJI010000000, and consists of
            sequences JBMFJI010000001-JBMFJI010000123.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 51,219643x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049973875.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:04:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,676
            Genes (coding)                    :: 1,618
            CDSs (with protein)               :: 1,618
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 12 of 58
            Pseudo Genes (incomplete)         :: 48 of 58
            Pseudo Genes (internal stop)      :: 4 of 58
            Pseudo Genes (multiple problems)  :: 4 of 58
            CRISPR Arrays                     :: 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561481
                     /organism="Acidilobus sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4331-13"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:1872109"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49998310 N 160.00555202 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFJI010000001-JBMFJI010000123
WGS_SCAFLD  NZ_JBMFJI010000001-NZ_JBMFJI010000123
//
LOCUS       NZ_JBMFVF010000000   1452159 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Caldisphaera sp. isolate KM4348-22, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFVF000000000
VERSION     NZ_JBMFVF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003747
            Assembly: GCF_049966135.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldisphaera sp. (hot springs metagenome)
  ORGANISM  Caldisphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Acidilobales;
            Caldisphaeraceae; Caldisphaera.
REFERENCE   1  (bases 1 to 1452159)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1452159)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFVF000000000.1.
            The Caldisphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFVF000000000.  This version of the project
            (01) has the accession number NZ_JBMFVF010000000, and consists of
            sequences JBMFVF010000001-JBMFVF010000100.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25,499949x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049966135.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:36:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,585
            CDSs (total)                      :: 1,534
            Genes (coding)                    :: 1,492
            CDSs (with protein)               :: 1,492
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 6 of 42
            Pseudo Genes (incomplete)         :: 38 of 42
            Pseudo Genes (internal stop)      :: 3 of 42
            Pseudo Genes (multiple problems)  :: 5 of 42
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452159
                     /organism="Caldisphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4348-22"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2060322"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49857044 N 160.01507269 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFVF010000001-JBMFVF010000100
WGS_SCAFLD  NZ_JBMFVF010000001-NZ_JBMFVF010000100
//
LOCUS       NZ_JBMFVC010000000   1931760 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Caldivirga sp. isolate KM4348-19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFVC000000000
VERSION     NZ_JBMFVC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003744
            Assembly: GCF_049966195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldivirga sp. (hot springs metagenome)
  ORGANISM  Caldivirga sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Caldivirga.
REFERENCE   1  (bases 1 to 1931760)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1931760)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFVC000000000.1.
            The Caldivirga sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFVC000000000.  This version of the project
            (01) has the accession number NZ_JBMFVC010000000, and consists of
            sequences JBMFVC010000001-JBMFVC010000095.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34,615754x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049966195.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:47:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,030
            CDSs (total)                      :: 1,988
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 5 of 54
            Pseudo Genes (incomplete)         :: 48 of 54
            Pseudo Genes (internal stop)      :: 3 of 54
            Pseudo Genes (multiple problems)  :: 2 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931760
                     /organism="Caldivirga sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4348-19"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2080243"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49857044 N 160.01507269 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFVC010000001-JBMFVC010000095
WGS_SCAFLD  NZ_JBMFVC010000001-NZ_JBMFVC010000095
//
LOCUS       NZ_JBMFOX010000000   1465582 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Candidatus Hadarchaeum sp. isolate KM4338-48, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBMFOX000000000
VERSION     NZ_JBMFOX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003235
            Assembly: GCF_049969415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Candidatus Hadarchaeum sp. (hot springs metagenome)
  ORGANISM  Candidatus Hadarchaeum sp.
            Archaea; Methanobacteriati; Candidatus Hadarchaeota; Candidatus
            Hadarchaeia; Candidatus Hadarchaeales; Candidatus Hadarchaeaceae;
            Candidatus Hadarchaeum.
REFERENCE   1  (bases 1 to 1465582)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1465582)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFOX000000000.1.
            The Candidatus Hadarchaeum sp. whole genome shotgun (WGS) project
            has the project accession NZ_JBMFOX000000000.  This version of the
            project (01) has the accession number NZ_JBMFOX010000000, and
            consists of sequences JBMFOX010000001-JBMFOX010000138.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25,687532x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049969415.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:48:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,678
            CDSs (total)                      :: 1,601
            Genes (coding)                    :: 1,557
            CDSs (with protein)               :: 1,557
            Genes (RNA)                       :: 77
            rRNAs                             :: 2, 7, 11 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 9 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 8 of 44
            Pseudo Genes (incomplete)         :: 40 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 5 of 44
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465582
                     /organism="Candidatus Hadarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4338-48"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2883567"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49818447 N 160.01349767 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFOX010000001-JBMFOX010000138
WGS_SCAFLD  NZ_JBMFOX010000001-NZ_JBMFOX010000138
//
LOCUS       NZ_JBMFID010000000   1465723 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Caldisphaera sp. isolate KM4324-14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFID000000000
VERSION     NZ_JBMFID000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003055
            Assembly: GCF_049976485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldisphaera sp. (hot springs metagenome)
  ORGANISM  Caldisphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Acidilobales;
            Caldisphaeraceae; Caldisphaera.
REFERENCE   1  (bases 1 to 1465723)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1465723)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFID000000000.1.
            The Caldisphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFID000000000.  This version of the project
            (01) has the accession number NZ_JBMFID010000000, and consists of
            sequences JBMFID010000001-JBMFID010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80,798596x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049976485.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:58:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,560
            CDSs (total)                      :: 1,507
            Genes (coding)                    :: 1,470
            CDSs (with protein)               :: 1,470
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 5 of 37
            Pseudo Genes (incomplete)         :: 31 of 37
            Pseudo Genes (internal stop)      :: 4 of 37
            Pseudo Genes (multiple problems)  :: 3 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465723
                     /organism="Caldisphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4324-14"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2060322"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.50098826 N 160.00456060 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFID010000001-JBMFID010000054
WGS_SCAFLD  NZ_JBMFID010000001-NZ_JBMFID010000054
//
LOCUS       NZ_JBMFJM010000000   2014345 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Caldivirga sp. isolate KM4331-17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFJM000000000
VERSION     NZ_JBMFJM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003091
            Assembly: GCF_049973695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldivirga sp. (hot springs metagenome)
  ORGANISM  Caldivirga sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Caldivirga.
REFERENCE   1  (bases 1 to 2014345)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2014345)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFJM000000000.1.
            The Caldivirga sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFJM000000000.  This version of the project
            (01) has the accession number NZ_JBMFJM010000000, and consists of
            sequences JBMFJM010000001-JBMFJM010000244.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10,265631x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049973695.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:01:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,222
            CDSs (total)                      :: 2,185
            Genes (coding)                    :: 2,083
            CDSs (with protein)               :: 2,083
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 13 of 102
            Pseudo Genes (incomplete)         :: 89 of 102
            Pseudo Genes (internal stop)      :: 5 of 102
            Pseudo Genes (multiple problems)  :: 4 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014345
                     /organism="Caldivirga sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4331-17"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2080243"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49998310 N 160.00555202 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFJM010000001-JBMFJM010000244
WGS_SCAFLD  NZ_JBMFJM010000001-NZ_JBMFJM010000244
//
LOCUS       NZ_JBMFIW010000000   1514635 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Caldisphaera sp. isolate KM4331-01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFIW000000000
VERSION     NZ_JBMFIW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003075
            Assembly: GCF_049974385.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldisphaera sp. (hot springs metagenome)
  ORGANISM  Caldisphaera sp.
            Archaea; Thermoproteota; Thermoprotei; Acidilobales;
            Caldisphaeraceae; Caldisphaera.
REFERENCE   1  (bases 1 to 1514635)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1514635)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFIW000000000.1.
            The Caldisphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFIW000000000.  This version of the project
            (01) has the accession number NZ_JBMFIW010000000, and consists of
            sequences JBMFIW010000001-JBMFIW010000079.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1532,557242x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049974385.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:57:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,633
            CDSs (total)                      :: 1,580
            Genes (coding)                    :: 1,538
            CDSs (with protein)               :: 1,538
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 7 of 42
            Pseudo Genes (incomplete)         :: 36 of 42
            Pseudo Genes (internal stop)      :: 3 of 42
            Pseudo Genes (multiple problems)  :: 4 of 42
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514635
                     /organism="Caldisphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4331-01"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2060322"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49998310 N 160.00555202 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFIW010000001-JBMFIW010000079
WGS_SCAFLD  NZ_JBMFIW010000001-NZ_JBMFIW010000079
//
LOCUS       NZ_JBMFIN010000000   2050187 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Caldivirga sp. isolate KM4324-24, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFIN000000000
VERSION     NZ_JBMFIN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003065
            Assembly: GCF_049976265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Caldivirga sp. (hot springs metagenome)
  ORGANISM  Caldivirga sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Caldivirga.
REFERENCE   1  (bases 1 to 2050187)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2050187)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFIN000000000.1.
            The Caldivirga sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFIN000000000.  This version of the project
            (01) has the accession number NZ_JBMFIN010000000, and consists of
            sequences JBMFIN010000001-JBMFIN010000124.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26,79576x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049976265.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:08:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,177
            CDSs (total)                      :: 2,141
            Genes (coding)                    :: 2,080
            CDSs (with protein)               :: 2,080
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 7 of 61
            Pseudo Genes (incomplete)         :: 52 of 61
            Pseudo Genes (internal stop)      :: 5 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050187
                     /organism="Caldivirga sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4324-24"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2080243"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.50098826 N 160.00456060 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFIN010000001-JBMFIN010000124
WGS_SCAFLD  NZ_JBMFIN010000001-NZ_JBMFIN010000124
//
LOCUS       NZ_JBMFMW010000000   1225790 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Desulfurococcus sp. isolate KM4337-31, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFMW000000000
VERSION     NZ_JBMFMW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003181
            Assembly: GCF_049970475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Desulfurococcus sp. (hot springs metagenome)
  ORGANISM  Desulfurococcus sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Desulfurococcus.
REFERENCE   1  (bases 1 to 1225790)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1225790)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFMW000000000.1.
            The Desulfurococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFMW000000000.  This version of the project
            (01) has the accession number NZ_JBMFMW010000000, and consists of
            sequences JBMFMW010000001-JBMFMW010000164.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10,228812x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049970475.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:46:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,405
            CDSs (total)                      :: 1,366
            Genes (coding)                    :: 1,315
            CDSs (with protein)               :: 1,315
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 3 of 51
            Pseudo Genes (incomplete)         :: 49 of 51
            Pseudo Genes (internal stop)      :: 1 of 51
            Pseudo Genes (multiple problems)  :: 2 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225790
                     /organism="Desulfurococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4337-31"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:51678"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49802642 N 160.01433020 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFMW010000001-JBMFMW010000164
WGS_SCAFLD  NZ_JBMFMW010000001-NZ_JBMFMW010000164
//
LOCUS       NZ_JALLGV010000000   4598055 bp    DNA     linear   BCT 15-MAY-2025
DEFINITION  Halorientalis brevis strain YC89, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLGV000000000
VERSION     NZ_JALLGV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27400809
            Assembly: GCF_023077655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis brevis
  ORGANISM  Halorientalis brevis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1  (bases 1 to 4598055)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4598055)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLGV000000000.1.
            The Halorientalis brevis whole genome shotgun (WGS) project has the
            project accession NZ_JALLGV000000000.  This version of the project
            (01) has the accession number NZ_JALLGV010000000, and consists of
            sequences JALLGV010000001-JALLGV010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023077655.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 11:32:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,731
            CDSs (total)                      :: 4,664
            Genes (coding)                    :: 4,633
            CDSs (with protein)               :: 4,633
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 12 of 31
            Pseudo Genes (incomplete)         :: 21 of 31
            Pseudo Genes (internal stop)      :: 2 of 31
            Pseudo Genes (multiple problems)  :: 3 of 31
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4598055
                     /organism="Halorientalis brevis"
                     /mol_type="genomic DNA"
                     /strain="YC89"
                     /isolation_source="salt lake"
                     /type_material="type strain of Halorientalis brevis"
                     /db_xref="taxon:1126241"
                     /geo_loc_name="China: Yuncheng, Shanxi"
                     /collection_date="2010"
WGS         JALLGV010000001-JALLGV010000015
WGS_SCAFLD  NZ_JALLGV010000001-NZ_JALLGV010000015
//
LOCUS       NZ_JBMFSV010000000   1068240 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Fervidicoccus sp. isolate KM4345-34, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFSV000000000
VERSION     NZ_JBMFSV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003339
            Assembly: GCF_049967375.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Fervidicoccus sp. (hot springs metagenome)
  ORGANISM  Fervidicoccus sp.
            Archaea; Thermoproteota; Thermoprotei; Fervidicoccales;
            Fervidicoccaceae; Fervidicoccus.
REFERENCE   1  (bases 1 to 1068240)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1068240)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFSV000000000.1.
            The Fervidicoccus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFSV000000000.  This version of the project
            (01) has the accession number NZ_JBMFSV010000000, and consists of
            sequences JBMFSV010000001-JBMFSV010000045.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15,877278x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049967375.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:39:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,180
            CDSs (total)                      :: 1,137
            Genes (coding)                    :: 1,121
            CDSs (with protein)               :: 1,121
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 3 of 16
            Pseudo Genes (incomplete)         :: 14 of 16
            Pseudo Genes (internal stop)      :: 3 of 16
            Pseudo Genes (multiple problems)  :: 3 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068240
                     /organism="Fervidicoccus sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4345-34"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2060324"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49943570 N 160.01516536 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFSV010000001-JBMFSV010000045
WGS_SCAFLD  NZ_JBMFSV010000001-NZ_JBMFSV010000045
//
LOCUS       NZ_JBMFLX010000000   1959741 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Infirmifilum sp. isolate KM4337-06, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFLX000000000
VERSION     NZ_JBMFLX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003156
            Assembly: GCF_049970975.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Infirmifilum sp. (hot springs metagenome)
  ORGANISM  Infirmifilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Infirmifilum.
REFERENCE   1  (bases 1 to 1959741)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1959741)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFLX000000000.1.
            The Infirmifilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFLX000000000.  This version of the project
            (01) has the accession number NZ_JBMFLX010000000, and consists of
            sequences JBMFLX010000001-JBMFLX010000222.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 279,12297x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049970975.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:58:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,146
            CDSs (total)                      :: 2,097
            Genes (coding)                    :: 2,038
            CDSs (with protein)               :: 2,038
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 2 of 59
            Pseudo Genes (incomplete)         :: 56 of 59
            Pseudo Genes (internal stop)      :: 1 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959741
                     /organism="Infirmifilum sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4337-06"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2856575"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49802642 N 160.01433020 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFLX010000001-JBMFLX010000222
WGS_SCAFLD  NZ_JBMFLX010000001-NZ_JBMFLX010000222
//
LOCUS       NZ_JBMFKD010000000   1505373 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Infirmifilum sp. isolate KM4336-14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFKD000000000
VERSION     NZ_JBMFKD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003109
            Assembly: GCF_049972805.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Infirmifilum sp. (hot springs metagenome)
  ORGANISM  Infirmifilum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermofilales;
            Thermofilaceae; Infirmifilum.
REFERENCE   1  (bases 1 to 1505373)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1505373)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFKD000000000.1.
            The Infirmifilum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFKD000000000.  This version of the project
            (01) has the accession number NZ_JBMFKD010000000, and consists of
            sequences JBMFKD010000001-JBMFKD010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83,331008x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049972805.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:03:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,675
            CDSs (total)                      :: 1,606
            Genes (coding)                    :: 1,586
            CDSs (with protein)               :: 1,586
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 6, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 6, 8 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 2 of 20
            Pseudo Genes (incomplete)         :: 18 of 20
            Pseudo Genes (internal stop)      :: 0 of 20
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505373
                     /organism="Infirmifilum sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4336-14"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2856575"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49811739 N 160.01461120 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFKD010000001-JBMFKD010000052
WGS_SCAFLD  NZ_JBMFKD010000001-NZ_JBMFKD010000052
//
LOCUS       NZ_CBDHHI010000000   1723528 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Nitrosopumilus sp. isolate
            a7174fe6-efbc-48e7-936d-e4c6e82819a1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBDHHI000000000
VERSION     NZ_CBDHHI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117994254
            Sequence Read Archive: ERR14842668, ERR14857133
            Assembly: GCF_965263415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosopumilus sp. (jellyfish metagenome)
  ORGANISM  Nitrosopumilus sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1  (bases 1 to 1723528)
  CONSRTM   Wellcome Sanger Tree of Life Programme
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2025) WELLCOME SANGER INSTITUTE, Tree of Life,
            Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBDHHI000000000.1.
            The Nitrosopumilus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBDHHI000000000.  This version of the project
            (01) has the accession number NZ_CBDHHI010000000, and consists of
            sequences CBDHHI010000001-CBDHHI010000002.
            The metagenome-assembled genome assembly
            jsCotTube1.Nitrosopumilus_sp_2.1 is based on 44x PacBio data
            generated by the Aquatic Symbiosis Genomics Project
            (https://www.aquaticsymbiosisgenomics.org/). The assembly process
            included the following sequence of steps: initial PacBio assembly
            generation with metaMDBG and coverage-, graph-, and HiC-based
            contig binning.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965263415.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:32:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,099
            CDSs (total)                      :: 2,050
            Genes (coding)                    :: 2,044
            CDSs (with protein)               :: 2,044
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 6 of 6
            Pseudo Genes (internal stop)      :: 0 of 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723528
                     /organism="Nitrosopumilus sp."
                     /mol_type="genomic DNA"
                     /isolate="a7174fe6-efbc-48e7-936d-e4c6e82819a1"
                     /isolation_source="Jellyfish: Cotylorhiza tuberculata"
                     /db_xref="taxon:2024843"
                     /environmental_sample
                     /geo_loc_name="Spain"
                     /metagenome_source="jellyfish metagenome"
                     /metagenomic
WGS         CBDHHI010000001-CBDHHI010000002
WGS_SCAFLD  NZ_CBDHHI010000001-NZ_CBDHHI010000002
WGS_SCAFLD  NZ_OZ253671
WGS_SCAFLD  OZ253671
//
LOCUS       NZ_DUIH01000000      1365525 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Methermicoccus shengliensis isolate UBA12518, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DUIH00000000
VERSION     NZ_DUIH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13193009
            Sequence Read Archive: SRR1977304
            Assembly: GCF_013330515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methermicoccus shengliensis (oil reservoir metagenome)
  ORGANISM  Methermicoccus shengliensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methermicoccaceae;
            Methermicoccus.
REFERENCE   1  (bases 1 to 1365525)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 1365525)
  AUTHORS   Rinke,C., Parks,D.H. and Hugenholtz,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DUIH00000000.1.
            The Methermicoccus shengliensis whole genome shotgun (WGS) project
            has the project accession NZ_DUIH00000000.  This version of the
            project (01) has the accession number NZ_DUIH01000000, and consists
            of sequences DUIH01000001-DUIH01000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013330515.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 10:43:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,508
            CDSs (total)                      :: 1,458
            Genes (coding)                    :: 1,449
            CDSs (with protein)               :: 1,449
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 1 of 9
            Pseudo Genes (incomplete)         :: 6 of 9
            Pseudo Genes (internal stop)      :: 4 of 9
            Pseudo Genes (multiple problems)  :: 1 of 9
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1365525
                     /organism="Methermicoccus shengliensis"
                     /mol_type="genomic DNA"
                     /isolate="UBA12518"
                     /isolation_source="oil reservoir sample I2"
                     /db_xref="taxon:660064"
                     /environmental_sample
                     /geo_loc_name="USA: Alaska, North Slope, Ivishak
                     formation"
                     /collection_date="2013"
                     /metagenome_source="oil reservoir metagenome"
                     /metagenomic
WGS         DUIH01000001-DUIH01000024
WGS_SCAFLD  NZ_DUIH01000001-NZ_DUIH01000024
//
LOCUS       NZ_JBEKLH010000000   2577822 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Methanoregula sp. isolate SPRUCE 366, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEKLH000000000
VERSION     NZ_JBEKLH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40287867
            Assembly: GCF_050010295.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (peat metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2577822)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Microbial networks generally resilient to warming and demonstrate
            the ability to obtain electron acceptors from soil organic matter
            in temperate peatland soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2577822)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2024) School of Civil and Environmental
            Engineering, Georgia Institute of Technology, 790 Atlantic Dr NW,
            Atlanta, GA 30332, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEKLH000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBEKLH000000000.  This version of the project
            (01) has the accession number NZ_JBEKLH010000000, and consists of
            sequences JBEKLH010000001-JBEKLH010000017.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050010295.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:56:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,631
            CDSs (total)                      :: 2,576
            Genes (coding)                    :: 2,558
            CDSs (with protein)               :: 2,558
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 3 of 18
            Pseudo Genes (incomplete)         :: 18 of 18
            Pseudo Genes (internal stop)      :: 1 of 18
            Pseudo Genes (multiple problems)  :: 3 of 18
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577822
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SPRUCE 366"
                     /isolation_source="Peat samples collected from the inside
                     of the SPRUCE enclosures"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA: SPRUCE facilities, Balsam, Minnesota"
                     /lat_lon="47.50 N 93.45 W"
                     /collection_date="2018-08"
                     /metagenome_source="peat metagenome"
                     /metagenomic
WGS         JBEKLH010000001-JBEKLH010000017
WGS_SCAFLD  NZ_JBEKLH010000001-NZ_JBEKLH010000017
//
LOCUS       NZ_JBEKGB010000000   2156907 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Methanoregula sp. isolate SPRUCE 243, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEKGB000000000
VERSION     NZ_JBEKGB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40287731
            Assembly: GCF_050012995.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (peat metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2156907)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Microbial networks generally resilient to warming and demonstrate
            the ability to obtain electron acceptors from soil organic matter
            in temperate peatland soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2156907)
  AUTHORS   Duchesneau,K., Borja,A.-R., Petro,C., Green,M., Makke,G.,
            Tfaily,M., Wilson,R., Roth,S.W., Schadt,C.W., Chanton,J.P.,
            Hanson,P., Konstantinidis,K. and Kostka,J.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2024) School of Civil and Environmental
            Engineering, Georgia Institute of Technology, 790 Atlantic Dr NW,
            Atlanta, GA 30332, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEKGB000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBEKGB000000000.  This version of the project
            (01) has the accession number NZ_JBEKGB010000000, and consists of
            sequences JBEKGB010000001-JBEKGB010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050012995.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:54:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,264
            CDSs (total)                      :: 2,207
            Genes (coding)                    :: 2,196
            CDSs (with protein)               :: 2,196
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 10 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156907
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SPRUCE 243"
                     /isolation_source="Peat samples collected from the inside
                     of the SPRUCE enclosures"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="USA: SPRUCE facilities, Balsam, Minnesota"
                     /lat_lon="47.50 N 93.45 W"
                     /collection_date="2018-08"
                     /metagenome_source="peat metagenome"
                     /metagenomic
WGS         JBEKGB010000001-JBEKGB010000029
WGS_SCAFLD  NZ_JBEKGB010000001-NZ_JBEKGB010000029
//
LOCUS       NZ_JBFXHJ010000000   2272314 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Methanomethylovorans sp. isolate CA_2019_TPIn_184, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBFXHJ000000000
VERSION     NZ_JBFXHJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40405783
            Assembly: GCF_050177135.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanomethylovorans sp. (landfill metagenome)
  ORGANISM  Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2272314)
  AUTHORS   Ippolito,I. and Hug,L.A.
  TITLE     Antimicrobial resistance gene diversity, prevalence, and mobility
            within four landfills
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2272314)
  AUTHORS   Hug,L.A. and Ippolito,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2024) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBFXHJ000000000.1.
            The Methanomethylovorans sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBFXHJ000000000.  This version of the
            project (01) has the accession number NZ_JBFXHJ010000000, and
            consists of sequences JBFXHJ010000001-JBFXHJ010000229.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-SEP-2021
            Assembly Method        :: SPAdes v. 3.13.1_36
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.92656323x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050177135.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:03:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,372
            CDSs (total)                      :: 2,330
            Genes (coding)                    :: 2,257
            CDSs (with protein)               :: 2,257
            Genes (RNA)                       :: 42
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 3 of 73
            Pseudo Genes (incomplete)         :: 68 of 73
            Pseudo Genes (internal stop)      :: 3 of 73
            Pseudo Genes (multiple problems)  :: 1 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272314
                     /organism="Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="CA_2019_TPIn_184"
                     /isolation_source="composite leachate sample CLC1 from
                     landfill leachate entering a leachate treatment plant at
                     closed municipal landfill in Southern California"
                     /db_xref="taxon:2758717"
                     /environmental_sample
                     /geo_loc_name="USA: California"
                     /lat_lon="34.04 N 117.90 W"
                     /collection_date="2019-06"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JBFXHJ010000001-JBFXHJ010000229
WGS_SCAFLD  NZ_JBFXHJ010000001-NZ_JBFXHJ010000229
//
LOCUS       NZ_JBNGCU010000000   1935770 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Methanocrinis sp. isolate E05-008, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNGCU000000000
VERSION     NZ_JBNGCU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47943640
            Assembly: GCF_049974945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocrinis sp. (hot springs metagenome)
  ORGANISM  Methanocrinis sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae;
            Methanocrinis.
REFERENCE   1  (bases 1 to 1935770)
  AUTHORS   Merkel,A.Y. and Slobodkin,A.I.
  TITLE     Metagenomic analysis of hot spring on the Caspian Sea coast next to
            the Artusen River bed,
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1935770)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNGCU000000000.1.
            The Methanocrinis sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBNGCU000000000.  This version of the project
            (01) has the accession number NZ_JBNGCU010000000, and consists of
            sequences JBNGCU010000001-JBNGCU010000193.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 78x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049974945.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:13:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,096
            CDSs (total)                      :: 2,055
            Genes (coding)                    :: 2,001
            CDSs (with protein)               :: 2,001
            Genes (RNA)                       :: 41
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 2 of 54
            Pseudo Genes (incomplete)         :: 54 of 54
            Pseudo Genes (internal stop)      :: 1 of 54
            Pseudo Genes (multiple problems)  :: 3 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935770
                     /organism="Methanocrinis sp."
                     /mol_type="genomic DNA"
                     /isolate="E05-008"
                     /isolation_source="Sediment from the hot spring"
                     /db_xref="taxon:3101522"
                     /environmental_sample
                     /geo_loc_name="Russia: Dagestan"
                     /lat_lon="42.3338889 N 48.0961111 E"
                     /collection_date="2024-05-22"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBNGCU010000001-JBNGCU010000193
WGS_SCAFLD  NZ_JBNGCU010000001-NZ_JBNGCU010000193
//
LOCUS       NZ_JBFXGY010000000   1640851 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Methanothrix sp. isolate CA_2019_TPIn_174, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBFXGY000000000
VERSION     NZ_JBFXGY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40405772
            Assembly: GCF_050177545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (landfill metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 1640851)
  AUTHORS   Ippolito,I. and Hug,L.A.
  TITLE     Antimicrobial resistance gene diversity, prevalence, and mobility
            within four landfills
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1640851)
  AUTHORS   Hug,L.A. and Ippolito,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2024) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBFXGY000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBFXGY000000000.  This version of the project
            (01) has the accession number NZ_JBFXGY010000000, and consists of
            sequences JBFXGY010000001-JBFXGY010000134.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-SEP-2021
            Assembly Method        :: SPAdes v. 3.13.1_36
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.20745679x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050177545.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:19:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,673
            CDSs (total)                      :: 1,631
            Genes (coding)                    :: 1,587
            CDSs (with protein)               :: 1,587
            Genes (RNA)                       :: 42
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 3 of 44
            Pseudo Genes (incomplete)         :: 42 of 44
            Pseudo Genes (internal stop)      :: 0 of 44
            Pseudo Genes (multiple problems)  :: 1 of 44
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640851
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="CA_2019_TPIn_174"
                     /isolation_source="composite leachate sample CLC1 from
                     landfill leachate entering a leachate treatment plant at
                     closed municipal landfill in Southern California"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="USA: California"
                     /lat_lon="34.04 N 117.90 W"
                     /collection_date="2019-06"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JBFXGY010000001-JBFXGY010000134
WGS_SCAFLD  NZ_JBFXGY010000001-NZ_JBFXGY010000134
//
LOCUS       NZ_JAPNUU010000000   2226188 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Pyrobaculum arsenaticum isolate CF.Pisc.bin.6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAPNUU000000000
VERSION     NZ_JAPNUU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31719899
            Assembly: GCF_026627015.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum arsenaticum (hot springs metagenome)
  ORGANISM  Pyrobaculum arsenaticum
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2226188)
  AUTHORS   Ugwuanyi,I.R., Fogel,M.L., Bowden,R., Steele,A., De Natale,G.,
            Troise,C., Somma,R., Piochi,M., Mormone,A. and Glamoclija,M.
  TITLE     Comparative Metagenomics at Solfatara and Pisciarelli Hydrothermal
            Systems in Italy Reveal that Ecological Differences Across
            Substrates are not Ubiquitous
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2226188)
  AUTHORS   Ugwuanyi,I.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-NOV-2022) Earth and Environmental Sciences, Rutgers
            University, 101 Warren Street, Newark, NJ 07102, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPNUU000000000.1.
            The Pyrobaculum arsenaticum whole genome shotgun (WGS) project has
            the project accession NZ_JAPNUU000000000.  This version of the
            project (01) has the accession number NZ_JAPNUU010000000, and
            consists of sequences JAPNUU010000001-JAPNUU010000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 804x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026627015.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 11:50:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,643
            CDSs (total)                      :: 2,589
            Genes (coding)                    :: 2,525
            CDSs (with protein)               :: 2,525
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 17 of 64
            Pseudo Genes (incomplete)         :: 42 of 64
            Pseudo Genes (internal stop)      :: 11 of 64
            Pseudo Genes (multiple problems)  :: 5 of 64
            CRISPR Arrays                     :: 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226188
                     /organism="Pyrobaculum arsenaticum"
                     /mol_type="genomic DNA"
                     /isolate="CF.Pisc.bin.6"
                     /isolation_source="acidic hydrothermal system"
                     /db_xref="taxon:121277"
                     /environmental_sample
                     /geo_loc_name="Italy: Naples, Campi Flegrei, Pisciarelli
                     hydrothermal system"
                     /lat_lon="40.82949 N 14.14728 E"
                     /collection_date="2012-11-16"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAPNUU010000001-JAPNUU010000068
WGS_SCAFLD  NZ_JAPNUU010000001-NZ_JAPNUU010000068
//
LOCUS       NZ_JBMFKV010000000   2365809 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Pyrobaculum sp. isolate KM4336-32, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFKV000000000
VERSION     NZ_JBMFKV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003127
            Assembly: GCF_049971835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2365809)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2365809)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFKV000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFKV000000000.  This version of the project
            (01) has the accession number NZ_JBMFKV010000000, and consists of
            sequences JBMFKV010000001-JBMFKV010000427.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18,717626x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049971835.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:15:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,018
            CDSs (total)                      :: 2,984
            Genes (coding)                    :: 2,824
            CDSs (with protein)               :: 2,824
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 32
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 7 of 160
            Pseudo Genes (incomplete)         :: 151 of 160
            Pseudo Genes (internal stop)      :: 6 of 160
            Pseudo Genes (multiple problems)  :: 3 of 160
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365809
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4336-32"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49811739 N 160.01461120 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFKV010000001-JBMFKV010000427
WGS_SCAFLD  NZ_JBMFKV010000001-NZ_JBMFKV010000427
//
LOCUS       NZ_JBMFLY010000000   1291625 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Thermogladius sp. isolate KM4337-07, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFLY000000000
VERSION     NZ_JBMFLY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003157
            Assembly: GCF_049970955.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermogladius sp. (hot springs metagenome)
  ORGANISM  Thermogladius sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Thermogladius.
REFERENCE   1  (bases 1 to 1291625)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1291625)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFLY000000000.1.
            The Thermogladius sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFLY000000000.  This version of the project
            (01) has the accession number NZ_JBMFLY010000000, and consists of
            sequences JBMFLY010000001-JBMFLY010000130.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 271,653339x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049970955.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:52:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,413
            Genes (coding)                    :: 1,384
            CDSs (with protein)               :: 1,384
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 0 of 29
            Pseudo Genes (incomplete)         :: 29 of 29
            Pseudo Genes (internal stop)      :: 0 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1291625
                     /organism="Thermogladius sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4337-07"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2023064"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49802642 N 160.01433020 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFLY010000001-JBMFLY010000130
WGS_SCAFLD  NZ_JBMFLY010000001-NZ_JBMFLY010000130
//
LOCUS       NZ_JBMFII010000000   1289454 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Thermogladius sp. isolate KM4324-19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFII000000000
VERSION     NZ_JBMFII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003060
            Assembly: GCF_049976385.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Thermogladius sp. (hot springs metagenome)
  ORGANISM  Thermogladius sp.
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Thermogladius.
REFERENCE   1  (bases 1 to 1289454)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1289454)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFII000000000.1.
            The Thermogladius sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFII000000000.  This version of the project
            (01) has the accession number NZ_JBMFII010000000, and consists of
            sequences JBMFII010000001-JBMFII010000075.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 46,496241x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049976385.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:01:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,440
            CDSs (total)                      :: 1,392
            Genes (coding)                    :: 1,379
            CDSs (with protein)               :: 1,379
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 0 of 13
            Pseudo Genes (incomplete)         :: 13 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289454
                     /organism="Thermogladius sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4324-19"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2023064"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.50098826 N 160.00456060 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFII010000001-JBMFII010000075
WGS_SCAFLD  NZ_JBMFII010000001-NZ_JBMFII010000075
//
LOCUS       NZ_JBMFVA010000000   2133385 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Vulcanisaeta sp. isolate KM4348-17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFVA000000000
VERSION     NZ_JBMFVA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003742
            Assembly: GCF_049966235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Vulcanisaeta sp. (hot springs metagenome)
  ORGANISM  Vulcanisaeta sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1  (bases 1 to 2133385)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2133385)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFVA000000000.1.
            The Vulcanisaeta sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFVA000000000.  This version of the project
            (01) has the accession number NZ_JBMFVA010000000, and consists of
            sequences JBMFVA010000001-JBMFVA010000090.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39,905694x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049966235.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 13:47:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,373
            CDSs (total)                      :: 2,319
            Genes (coding)                    :: 2,273
            CDSs (with protein)               :: 2,273
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 6 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 1 of 46
            Pseudo Genes (incomplete)         :: 44 of 46
            Pseudo Genes (internal stop)      :: 2 of 46
            Pseudo Genes (multiple problems)  :: 1 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133385
                     /organism="Vulcanisaeta sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4348-17"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2020871"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.49857044 N 160.01507269 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFVA010000001-JBMFVA010000090
WGS_SCAFLD  NZ_JBMFVA010000001-NZ_JBMFVA010000090
//
LOCUS       NZ_JBMFHY010000000   2153840 bp    DNA     linear   ENV 15-MAY-2025
DEFINITION  MAG: Vulcanisaeta sp. isolate KM4324-09, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFHY000000000
VERSION     NZ_JBMFHY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47003050
            Assembly: GCF_049976585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Vulcanisaeta sp. (hot springs metagenome)
  ORGANISM  Vulcanisaeta sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1  (bases 1 to 2153840)
  AUTHORS   Elcheninov,A.G., Tulenkov,A.S., Karaseva,A.I., Zayulina,K.S.,
            Merkel,A.Y., Klyukina,A. and Kochetkova,T.V.
  TITLE     Insight into metabolic features of uncultivated archaea from ARK-15
            group via comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2153840)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2025) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFHY000000000.1.
            The Vulcanisaeta sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMFHY000000000.  This version of the project
            (01) has the accession number NZ_JBMFHY010000000, and consists of
            sequences JBMFHY010000001-JBMFHY010000076.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 123,67672x
            Sequencing Technology  :: DNBSEQ-G400
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049976585.1-RS_2025_05_14
            Annotation Date                   :: 05/14/2025 14:07:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,430
            CDSs (total)                      :: 2,382
            Genes (coding)                    :: 2,324
            CDSs (with protein)               :: 2,324
            Genes (RNA)                       :: 48
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 6 of 58
            Pseudo Genes (incomplete)         :: 47 of 58
            Pseudo Genes (internal stop)      :: 7 of 58
            Pseudo Genes (multiple problems)  :: 2 of 58
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153840
                     /organism="Vulcanisaeta sp."
                     /mol_type="genomic DNA"
                     /isolate="KM4324-09"
                     /isolation_source="terrestrial hot spring"
                     /db_xref="taxon:2020871"
                     /environmental_sample
                     /geo_loc_name="Russia: Kamchatka, caldera Uzon"
                     /lat_lon="54.50098826 N 160.00456060 E"
                     /collection_date="2023-08"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBMFHY010000001-JBMFHY010000076
WGS_SCAFLD  NZ_JBMFHY010000001-NZ_JBMFHY010000076
//
LOCUS       NZ_JAKNCW010000000   2239489 bp    DNA     linear   BCT 18-MAY-2025
DEFINITION  Metallosphaera javensis (ex Hofmann et al. 2022) strain J1, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAKNCW000000000
VERSION     NZ_JAKNCW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25174631
            Assembly: GCF_022064045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Metallosphaera javensis (ex Hofmann et al. 2022)
  ORGANISM  Metallosphaera javensis (ex Hofmann et al. 2022)
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Metallosphaera.
REFERENCE   1  (bases 1 to 2239489)
  AUTHORS   Hofmann,M., Norris,P.R., Malik,L., Schippers,A., Schmidt,G.,
            Wolf,J., Neumann-Schaal,M. and Hedrich,S.
  TITLE     Metallosphaera javensis sp. nov., a novel species of
            thermoacidophilic archaea, isolated from a volcanic area
  JOURNAL   Int J Syst Evol Microbiol 72 (10) (2022)
   PUBMED   36251741
REFERENCE   2  (bases 1 to 2239489)
  AUTHORS   Hofmann,M., Norris,P., Malik,L., Schippers,A. and Hedrich,S.
  TITLE     Metallosphaera sp. J1 genome
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2239489)
  AUTHORS   Hedrich,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JAN-2022) Institute of Biosciences, TU Bergakademie
            Freiberg, Leipziger Str. 29, Freiberg 09599, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNCW000000000.1.
            The Metallosphaera javensis (ex Hofmann et al. 2022) whole genome
            shotgun (WGS) project has the project accession NZ_JAKNCW000000000.
            This version of the project (01) has the accession number
            NZ_JAKNCW010000000, and consists of sequences
            JAKNCW010000001-JAKNCW010000087.
            Bacteria and source DNA available from DSMZ.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2021
            Assembly Method       :: SPAdes v. 21.03.2021
            Genome Coverage       :: 12.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022064045.1-RS_2025_05_18
            Annotation Date                   :: 05/18/2025 10:47:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,512
            CDSs (total)                      :: 2,461
            Genes (coding)                    :: 2,405
            CDSs (with protein)               :: 2,405
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 18 of 56
            Pseudo Genes (incomplete)         :: 45 of 56
            Pseudo Genes (internal stop)      :: 6 of 56
            Pseudo Genes (multiple problems)  :: 10 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239489
                     /organism="Metallosphaera javensis (ex Hofmann et al.
                     2022)"
                     /mol_type="genomic DNA"
                     /strain="J1"
                     /isolation_source="hot pool at volcano site"
                     /type_material="type strain of Metallosphaera javensis (ex
                     Hofmann et al. 2022)"
                     /db_xref="taxon:99938"
                     /geo_loc_name="Indonesia"
                     /collection_date="1998-06-12"
WGS         JAKNCW010000001-JAKNCW010000087
WGS_SCAFLD  NZ_JAKNCW010000001-NZ_JAKNCW010000087
//
LOCUS       NZ_JASEII010000000   1636539 bp    DNA     linear   ENV 19-MAY-2025
DEFINITION  MAG: Methanothermobacter wolfeii isolate Yes71-02, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JASEII000000000
VERSION     NZ_JASEII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34587970
            Assembly: GCF_030017545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothermobacter wolfeii (groundwater metagenome)
  ORGANISM  Methanothermobacter wolfeii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1636539)
  AUTHORS   Zavarzina,D.G., Maslov,A., Merkel,A.Y., Kharitonova,N.A.,
            Klyukina,A., Baranovskaya,E.I., Baydariko,E.A., Potapov,E.G.,
            Zaylina,K.S., Chernyh,N.A. and Gavrilov,S.N.
  TITLE     Shadow of the past - crucial junctions of the Earth's biosphere are
            still ongoing in layered subsurface aquifers
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1636539)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASEII000000000.1.
            The Methanothermobacter wolfeii whole genome shotgun (WGS) project
            has the project accession NZ_JASEII000000000.  This version of the
            project (01) has the accession number NZ_JASEII010000000, and
            consists of sequences JASEII010000001-JASEII010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. spades 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2358,4856x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030017545.1-RS_2025_05_19
            Annotation Date                   :: 05/19/2025 12:31:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,768
            CDSs (total)                      :: 1,725
            Genes (coding)                    :: 1,713
            CDSs (with protein)               :: 1,713
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 4 of 12
            Pseudo Genes (incomplete)         :: 9 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            Pseudo Genes (multiple problems)  :: 1 of 12
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636539
                     /organism="Methanothermobacter wolfeii"
                     /mol_type="genomic DNA"
                     /isolate="Yes71-02"
                     /isolation_source="groundwater"
                     /db_xref="taxon:145261"
                     /environmental_sample
                     /geo_loc_name="Russia: Yessentuki mineral water deposit"
                     /lat_lon="44.18908116 N 42.94168816 E"
                     /collection_date="2020-11"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JASEII010000001-JASEII010000014
WGS_SCAFLD  NZ_JASEII010000001-NZ_JASEII010000014
//
LOCUS       NZ_JASEFF010000000   2368454 bp    DNA     linear   ENV 19-MAY-2025
DEFINITION  MAG: Methanocella conradii isolate Yes49-01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JASEFF000000000
VERSION     NZ_JASEFF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34587887
            Assembly: GCF_030019315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanocella conradii (groundwater metagenome)
  ORGANISM  Methanocella conradii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.
REFERENCE   1  (bases 1 to 2368454)
  AUTHORS   Zavarzina,D.G., Maslov,A., Merkel,A.Y., Kharitonova,N.A.,
            Klyukina,A., Baranovskaya,E.I., Baydariko,E.A., Potapov,E.G.,
            Zaylina,K.S., Chernyh,N.A. and Gavrilov,S.N.
  TITLE     Shadow of the past - crucial junctions of the Earth's biosphere are
            still ongoing in layered subsurface aquifers
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2368454)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASEFF000000000.1.
            The Methanocella conradii whole genome shotgun (WGS) project has
            the project accession NZ_JASEFF000000000.  This version of the
            project (01) has the accession number NZ_JASEFF010000000, and
            consists of sequences JASEFF010000001-JASEFF010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. spades 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 42,119408x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030019315.1-RS_2025_05_19
            Annotation Date                   :: 05/19/2025 12:53:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,581
            CDSs (total)                      :: 2,529
            Genes (coding)                    :: 2,511
            CDSs (with protein)               :: 2,511
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 8 of 18
            Pseudo Genes (incomplete)         :: 11 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            Pseudo Genes (multiple problems)  :: 3 of 18
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368454
                     /organism="Methanocella conradii"
                     /mol_type="genomic DNA"
                     /isolate="Yes49-01"
                     /isolation_source="groundwater"
                     /db_xref="taxon:1175444"
                     /environmental_sample
                     /geo_loc_name="Russia: Yessentuki mineral water deposit"
                     /lat_lon="44.11401979 N 42.90694440 E"
                     /collection_date="2020-11"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
WGS         JASEFF010000001-JASEFF010000027
WGS_SCAFLD  NZ_JASEFF010000001-NZ_JASEFF010000027
//
LOCUS       NZ_CAWVJM010000000   1577234 bp    DNA     linear   ENV 20-MAY-2025
DEFINITION  MAG: Methanobrevibacter woesei isolate
            metabat2_6737_HOM_CTRL_hybrid.61 MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAWVJM000000000
VERSION     NZ_CAWVJM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115146155
            Assembly: GCF_963929655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter woesei (chicken gut metagenome)
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1577234)
  AUTHORS   Ahmad,A. and Glendinning,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2024) The Roslin Institute (University of
            Edinburgh), Glendinning group, Roslin institute, The University of
            Edinburgh, Easter Bush Campus, Midlothian EH25 9RG, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWVJM000000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_CAWVJM000000000.  This version of the
            project (01) has the accession number NZ_CAWVJM010000000, and
            consists of sequences CAWVJM010000001-CAWVJM010000002.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963929655.1-RS_2025_05_20
            Annotation Date                   :: 05/20/2025 11:45:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,673
            CDSs (total)                      :: 1,631
            Genes (coding)                    :: 1,625
            CDSs (with protein)               :: 1,625
            Genes (RNA)                       :: 42
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 1 of 6
            Pseudo Genes (incomplete)         :: 3 of 6
            Pseudo Genes (internal stop)      :: 2 of 6
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577234
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /isolate="metabat2_6737_HOM_CTRL_hybrid.61 MAG"
                     /isolation_source="Caecal contents from a chicken (Gallus
                     gallus)"
                     /db_xref="taxon:190976"
                     /environmental_sample
                     /metagenome_source="chicken gut metagenome"
                     /metagenomic
WGS         CAWVJM010000001-CAWVJM010000002
WGS_SCAFLD  NZ_CAWVJM010000001-NZ_CAWVJM010000002
//
LOCUS       NZ_JBNPXC010000000   2449774 bp    DNA     linear   BCT 21-MAY-2025
DEFINITION  Methanobacterium oryzae strain DSM 11106, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNPXC000000000
VERSION     NZ_JBNPXC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18250256
            Assembly: GCF_050433505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium oryzae
  ORGANISM  Methanobacterium oryzae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2449774)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2449774)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2025) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNPXC000000000.1.
            The Methanobacterium oryzae whole genome shotgun (WGS) project has
            the project accession NZ_JBNPXC000000000.  This version of the
            project (01) has the accession number NZ_JBNPXC010000000, and
            consists of sequences JBNPXC010000001-JBNPXC010000006.
            pi_orcid: https://orcid.org/0000-0002-5144-6200.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 555.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050433505.1-RS_2025_05_20
            Annotation Date                   :: 05/20/2025 04:20:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,606
            CDSs (total)                      :: 2,565
            Genes (coding)                    :: 2,558
            CDSs (with protein)               :: 2,558
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 0 of 7
            Pseudo Genes (incomplete)         :: 6 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2449774
                     /organism="Methanobacterium oryzae"
                     /mol_type="genomic DNA"
                     /strain="DSM 11106"
                     /culture_collection="DSM:11106"
                     /type_material="type strain of Methanobacterium oryzae"
                     /db_xref="taxon:69540"
                     /geo_loc_name="Philippines"
WGS         JBNPXC010000001-JBNPXC010000006
WGS_SCAFLD  NZ_JBNPXC010000001-NZ_JBNPXC010000006
//
LOCUS       NZ_JBNVBX010000000   1838021 bp    DNA     linear   ENV 22-MAY-2025
DEFINITION  MAG: Methanothrix sp. isolate A05DMB02, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNVBX000000000
VERSION     NZ_JBNVBX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48175370
            Assembly: GCF_050411015.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (mud metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 1838021)
  AUTHORS   Merkel,A.Y. and Chernyshov,M.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2025) Department of Extremophliles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNVBX000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBNVBX000000000.  This version of the project
            (01) has the accession number NZ_JBNVBX010000000, and consists of
            sequences JBNVBX010000001-JBNVBX010000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 248x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050411015.1-RS_2025_05_21
            Annotation Date                   :: 05/21/2025 14:18:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,794
            CDSs (total)                      :: 1,744
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 8 of 29
            Pseudo Genes (incomplete)         :: 23 of 29
            Pseudo Genes (internal stop)      :: 6 of 29
            Pseudo Genes (multiple problems)  :: 7 of 29
            CRISPR Arrays                     :: 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838021
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="A05DMB02"
                     /isolation_source="enrichment culture from terrestrial mud
                     volcano"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Russia: Sakhalin, Daginskiye Thermal
                     Springs"
                     /lat_lon="52.043 N 143.084 E"
                     /collection_date="2019-01-17"
                     /metagenome_source="mud metagenome"
                     /metagenomic
WGS         JBNVBX010000001-JBNVBX010000064
WGS_SCAFLD  NZ_JBNVBX010000001-NZ_JBNVBX010000064
//
LOCUS       NZ_JBDKRB010000000   1986551 bp    DNA     linear   ENV 22-MAY-2025
DEFINITION  MAG: Methanobacterium aggregans isolate 5_bin.148, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBDKRB000000000
VERSION     NZ_JBDKRB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39190160
            Assembly: GCF_039683635.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium aggregans (wastewater metagenome)
  ORGANISM  Methanobacterium aggregans
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 1986551)
  AUTHORS   Dang,H., Ewald,J.M. and Mattes,T.E.
  TITLE     Genome-Resolved Metagenomics and Metatranscriptomics Reveal
            Insights into the Ecology and Metabolism of Anaerobic Microbial
            Communities in PCB-Contaminated Sediments
  JOURNAL   Environ Sci Technol 57 (43), 16386-16398 (2023)
   PUBMED   37856784
REFERENCE   2  (bases 1 to 1986551)
  AUTHORS   Dang,H. and Mattes,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2024) Civil and Environmental Engineering,
            University of Iowa, 4258 Seamans Center, Iowa City, IA 52242, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDKRB000000000.1.
            The Methanobacterium aggregans whole genome shotgun (WGS) project
            has the project accession NZ_JBDKRB000000000.  This version of the
            project (01) has the accession number NZ_JBDKRB010000000, and
            consists of sequences JBDKRB010000001-JBDKRB010000119.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 21-MAR-2023
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 372.7928329048688x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_039683635.1-RS_2025_05_21
            Annotation Date                   :: 05/21/2025 14:55:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,034
            CDSs (total)                      :: 1,991
            Genes (coding)                    :: 1,969
            CDSs (with protein)               :: 1,969
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 40
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 20 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986551
                     /organism="Methanobacterium aggregans"
                     /mol_type="genomic DNA"
                     /isolate="5_bin.148"
                     /isolation_source="PCB contaminated wastewater treatment
                     lagoon sediment microcosms"
                     /db_xref="taxon:1615586"
                     /environmental_sample
                     /geo_loc_name="USA: Altavista Wastewater Treatment Plant,
                     Altavista, Virgina"
                     /lat_lon="37.113638 N 79.272834 W"
                     /collection_date="2017-07"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         JBDKRB010000001-JBDKRB010000119
WGS_SCAFLD  NZ_JBDKRB010000001-NZ_JBDKRB010000119
//
LOCUS       NZ_JBNLVO010000000   3405416 bp    DNA     linear   BCT 23-MAY-2025
DEFINITION  Haloparvum sp. PAK95, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNLVO000000000
VERSION     NZ_JBNLVO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48203070
            Assembly: GCF_050510935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloparvum sp. PAK95
  ORGANISM  Haloparvum sp. PAK95
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloparvum.
REFERENCE   1  (bases 1 to 3405416)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3405416)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNLVO000000000.1.
            The Haloparvum sp. PAK95 whole genome shotgun (WGS) project has the
            project accession NZ_JBNLVO000000000.  This version of the project
            (01) has the accession number NZ_JBNLVO010000000, and consists of
            sequences JBNLVO010000001-JBNLVO010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 700.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050510935.1-RS_2025_05_22
            Annotation Date                   :: 05/22/2025 14:04:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,271
            CDSs (total)                      :: 3,217
            Genes (coding)                    :: 3,175
            CDSs (with protein)               :: 3,175
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 12 of 42
            Pseudo Genes (incomplete)         :: 31 of 42
            Pseudo Genes (internal stop)      :: 5 of 42
            Pseudo Genes (multiple problems)  :: 6 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3405416
                     /organism="Haloparvum sp. PAK95"
                     /mol_type="genomic DNA"
                     /strain="PAK95"
                     /isolation_source="commercial salt"
                     /db_xref="taxon:3418962"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2021-12"
WGS         JBNLVO010000001-JBNLVO010000015
WGS_SCAFLD  NZ_JBNLVO010000001-NZ_JBNLVO010000015
//
LOCUS       NZ_JBDXXJ010000000   2213465 bp    DNA     linear   ENV 31-MAY-2025
DEFINITION  MAG: Methanobacterium sp. isolate NSW-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBDXXJ000000000
VERSION     NZ_JBDXXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41483005
            Sequence Read Archive: SRR7690237
            Assembly: GCF_040373355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (wetland metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2213465)
  AUTHORS   Fiore,N.A., Antony-Babu,S., Daly,R.A., Wrighton,K.C. and Weber,K.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2024) Biological Sciences, University of
            Nebraska-Lincoln, 232.1 Manter Hall 1104 T St, Lincoln, NE 68508,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDXXJ000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBDXXJ000000000.  This version of the project
            (01) has the accession number NZ_JBDXXJ010000000, and consists of
            sequences JBDXXJ010000001-JBDXXJ010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 03-OCT-2021
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 297x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040373355.1-RS_2025_05_31
            Annotation Date                   :: 05/31/2025 01:18:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,390
            CDSs (total)                      :: 2,353
            Genes (coding)                    :: 2,343
            CDSs (with protein)               :: 2,343
            Genes (RNA)                       :: 37
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 2 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213465
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="NSW-1"
                     /isolation_source="saline wetland"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="USA: Nebraska"
                     /lat_lon="40.8786 N 96.6766 W"
                     /collection_date="2017-02-06"
                     /metagenome_source="wetland metagenome"
                     /metagenomic
WGS         JBDXXJ010000001-JBDXXJ010000007
WGS_SCAFLD  NZ_JBDXXJ010000001-NZ_JBDXXJ010000007
//
LOCUS       NZ_JACRPY010000000   2260814 bp    DNA     linear   ENV 31-MAY-2025
DEFINITION  MAG: Methanobacterium sp. isolate
            NC_groundwater_1999_Pr3_S-0.65um_33_4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACRPY000000000
VERSION     NZ_JACRPY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15436799
            Assembly: GCF_016222945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (groundwater metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2260814)
  AUTHORS   He,C.Y., Keren,R., Whittaker,M., Farag,I.F., Doudna,J., Cate,J.H.D.
            and Banfield,J.F.
  TITLE     Huge and variable diversity of episymbiotic CPR bacteria and DPANN
            archaea in groundwater ecosystems
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2260814)
  AUTHORS   He,C.Y., Keren,R., Whittaker,M., Farag,I.F., Doudna,J., Cate,J.H.D.
            and Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2020) Earth and Planetary Science, Jill
            Banfield's Lab at Berkeley, University of California, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACRPY000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JACRPY000000000.  This version of the project
            (01) has the accession number NZ_JACRPY010000000, and consists of
            sequences JACRPY010000001-JACRPY010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 32.57x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016222945.1-RS_2025_05_31
            Annotation Date                   :: 05/31/2025 01:20:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,361
            CDSs (total)                      :: 2,322
            Genes (coding)                    :: 2,309
            CDSs (with protein)               :: 2,309
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 3 of 13
            Pseudo Genes (incomplete)         :: 5 of 13
            Pseudo Genes (internal stop)      :: 5 of 13
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2260814
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="NC_groundwater_1999_Pr3_S-0.65um_33_4"
                     /isolation_source="groundwater"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="USA: California, Middletown"
                     /lat_lon="38.70266 N 122.51889 W"
                     /collection_date="2018-09-10"
                     /metagenome_source="groundwater metagenome"
                     /metagenomic
                     /note="SR2-18-Sp65_coassembly_Methanobacterium_33_4"
WGS         JACRPY010000001-JACRPY010000011
WGS_SCAFLD  NZ_JACRPY010000001-NZ_JACRPY010000011
//
LOCUS       NZ_WOWA01000000      4012717 bp    DNA     linear   BCT 01-JUN-2025
DEFINITION  Haloarcula argentinensis strain pws5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WOWA00000000
VERSION     NZ_WOWA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13475465
            Assembly: GCF_012726115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula argentinensis
  ORGANISM  Haloarcula argentinensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4012717)
  AUTHORS   Verma,D.K., Gopal,K. and Prasad,E.S.
  TITLE     Whole genome sequencing of Haloarcula argentinensis strain pws5
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4012717)
  AUTHORS   Verma,D.K., Gopal,K. and Prasad,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2019) Advanced Protein Centre, CSIR-Institue of
            Microbial Technology, F9 Boys Hostel Imtech, IMTECH Sector 39A,
            Chandigarh, Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WOWA00000000.1.
            The Haloarcula argentinensis whole genome shotgun (WGS) project has
            the project accession NZ_WOWA00000000.  This version of the project
            (01) has the accession number NZ_WOWA01000000, and consists of
            sequences WOWA01000001-WOWA01000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9(CGWB)
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012726115.1-RS_2025_06_01
            Annotation Date                   :: 06/01/2025 10:03:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,153
            CDSs (total)                      :: 4,093
            Genes (coding)                    :: 4,020
            CDSs (with protein)               :: 4,020
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2 (5S, 16S)
            partial rRNAs                     :: 1, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 32 of 73
            Pseudo Genes (incomplete)         :: 53 of 73
            Pseudo Genes (internal stop)      :: 18 of 73
            Pseudo Genes (multiple problems)  :: 25 of 73
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4012717
                     /organism="Haloarcula argentinensis"
                     /mol_type="genomic DNA"
                     /strain="pws5"
                     /db_xref="taxon:43776"
                     /geo_loc_name="India"
                     /collection_date="2018-07-19"
WGS         WOWA01000001-WOWA01000011
WGS_SCAFLD  NZ_WOWA01000001-NZ_WOWA01000011
//
LOCUS       NZ_WOYG01000000      3394299 bp    DNA     linear   BCT 01-JUN-2025
DEFINITION  Halomicrobium mukohataei strain pws1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WOYG00000000
VERSION     NZ_WOYG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13475456
            Assembly: GCF_012726095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicrobium mukohataei
  ORGANISM  Halomicrobium mukohataei
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halomicrobium.
REFERENCE   1  (bases 1 to 3394299)
  AUTHORS   Verma,D.K., Gopal,K. and Prasad,E.S.
  TITLE     Whole-genome sequence of Halomicrobium mukohataei pws1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3394299)
  AUTHORS   Verma,D.K., Gopal,K. and Prasad,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2019) Advanced Protein Centre, CSIR-Institue of
            Microbial Technology, F9 Boys Hostel Imtech, IMTECH Sector 39A,
            Chandigarh, Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WOYG00000000.1.
            The Halomicrobium mukohataei whole genome shotgun (WGS) project has
            the project accession NZ_WOYG00000000.  This version of the project
            (01) has the accession number NZ_WOYG01000000, and consists of
            sequences WOYG01000001-WOYG01000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9(CGWB)
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012726095.1-RS_2025_06_01
            Annotation Date                   :: 06/01/2025 09:57:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,552
            CDSs (total)                      :: 3,496
            Genes (coding)                    :: 3,437
            CDSs (with protein)               :: 3,437
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 17 of 59
            Pseudo Genes (incomplete)         :: 48 of 59
            Pseudo Genes (internal stop)      :: 10 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3394299
                     /organism="Halomicrobium mukohataei"
                     /mol_type="genomic DNA"
                     /strain="pws1"
                     /db_xref="taxon:57705"
                     /geo_loc_name="India"
                     /collection_date="2018-07-19"
WGS         WOYG01000001-WOYG01000003
WGS_SCAFLD  NZ_WOYG01000001-NZ_WOYG01000003
//
LOCUS       NZ_JAMZFY010000000   3685742 bp    DNA     linear   BCT 03-JUN-2025
DEFINITION  Haloarcula laminariae strain LYG-108, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMZFY000000000
VERSION     NZ_JAMZFY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29406503
            Assembly: GCF_025457605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula laminariae
  ORGANISM  Haloarcula laminariae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3685742)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3685742)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMZFY000000000.1.
            The Haloarcula laminariae whole genome shotgun (WGS) project has
            the project accession NZ_JAMZFY000000000.  This version of the
            project (01) has the accession number NZ_JAMZFY010000000, and
            consists of sequences JAMZFY010000001-JAMZFY010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025457605.1-RS_2025_06_03
            Annotation Date                   :: 06/03/2025 10:46:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,811
            CDSs (total)                      :: 3,759
            Genes (coding)                    :: 3,735
            CDSs (with protein)               :: 3,735
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 9 of 24
            Pseudo Genes (incomplete)         :: 17 of 24
            Pseudo Genes (internal stop)      :: 9 of 24
            Pseudo Genes (multiple problems)  :: 9 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685742
                     /organism="Haloarcula laminariae"
                     /mol_type="genomic DNA"
                     /strain="LYG-108"
                     /isolation_source="sediment"
                     /type_material="type strain of Halomicroarcula laminariae"
                     /db_xref="taxon:2961577"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2017-10"
WGS         JAMZFY010000001-JAMZFY010000009
WGS_SCAFLD  NZ_JAMZFY010000001-NZ_JAMZFY010000009
//
LOCUS       NZ_JAMZFX010000000   3685742 bp    DNA     linear   BCT 03-JUN-2025
DEFINITION  Haloarcula laminariae strain LYG-24, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMZFX000000000
VERSION     NZ_JAMZFX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29406474
            Assembly: GCF_025457585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula laminariae
  ORGANISM  Haloarcula laminariae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3685742)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3685742)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMZFX000000000.1.
            The Haloarcula laminariae whole genome shotgun (WGS) project has
            the project accession NZ_JAMZFX000000000.  This version of the
            project (01) has the accession number NZ_JAMZFX010000000, and
            consists of sequences JAMZFX010000001-JAMZFX010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 220.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025457585.1-RS_2025_06_03
            Annotation Date                   :: 06/03/2025 10:44:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,811
            CDSs (total)                      :: 3,759
            Genes (coding)                    :: 3,735
            CDSs (with protein)               :: 3,735
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 9 of 24
            Pseudo Genes (incomplete)         :: 17 of 24
            Pseudo Genes (internal stop)      :: 9 of 24
            Pseudo Genes (multiple problems)  :: 9 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685742
                     /organism="Haloarcula laminariae"
                     /mol_type="genomic DNA"
                     /strain="LYG-24"
                     /isolation_source="sediment"
                     /db_xref="taxon:2961577"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2017-10"
WGS         JAMZFX010000001-JAMZFX010000009
WGS_SCAFLD  NZ_JAMZFX010000001-NZ_JAMZFX010000009
//
LOCUS       NZ_SAYS01000000      3757475 bp    DNA     linear   BCT 04-JUN-2025
DEFINITION  Halovenus amylolytica strain SHR40, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SAYS00000000
VERSION     NZ_SAYS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10691328
            Assembly: GCF_004015825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus amylolytica
  ORGANISM  Halovenus amylolytica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3757475)
  AUTHORS   Xu,Q., Cui,H.L. and Meng,F.
  TITLE     Haloprofundus halophilus sp. nov., isolated from the saline soil of
            Tarim Basin
  JOURNAL   Antonie Van Leeuwenhoek 112 (4), 553-559 (2019)
   PUBMED   30317453
REFERENCE   2  (bases 1 to 3757475)
  AUTHORS   Xu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2019) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SAYS00000000.1.
            The Halovenus amylolytica whole genome shotgun (WGS) project has
            the project accession NZ_SAYS00000000.  This version of the project
            (01) has the accession number NZ_SAYS01000000, and consists of
            sequences SAYS01000001-SAYS01000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. November-2018
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004015825.1-RS_2025_06_04
            Annotation Date                   :: 06/04/2025 01:26:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,749
            CDSs (total)                      :: 3,671
            Genes (coding)                    :: 3,584
            CDSs (with protein)               :: 3,584
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 68
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 28 of 87
            Pseudo Genes (incomplete)         :: 66 of 87
            Pseudo Genes (internal stop)      :: 13 of 87
            Pseudo Genes (multiple problems)  :: 16 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3757475
                     /organism="Halovenus amylolytica"
                     /mol_type="genomic DNA"
                     /strain="SHR40"
                     /isolation_source="salt lake"
                     /type_material="type strain of Halovenus amylolytica"
                     /db_xref="taxon:2500550"
                     /geo_loc_name="China: Xinjiang, Tarim Basin"
                     /collection_date="2013-04"
WGS         SAYS01000001-SAYS01000060
WGS_SCAFLD  NZ_ML137215-NZ_ML137217
WGS_SCAFLD  NZ_SAYS01000001
WGS_SCAFLD  NZ_SAYS01000004-NZ_SAYS01000010
WGS_SCAFLD  NZ_SAYS01000013-NZ_SAYS01000032
WGS_SCAFLD  NZ_SAYS01000035-NZ_SAYS01000060
//
LOCUS       NZ_JAHAVR010000000   2643145 bp    DNA     linear   BCT 04-JUN-2025
DEFINITION  Methanoculleus bourgensis strain E02.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHAVR000000000
VERSION     NZ_JAHAVR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19105232
            Assembly: GCF_018495055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus bourgensis
  ORGANISM  Methanoculleus bourgensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2643145)
  AUTHORS   Kupczok,A., Weidenbach,K., Wolf,S., Fischer,M.A., Kern,T.,
            Reetz,J., Urbanska,N., Kunzel,S., Schmitz,R.A. and Rother,M.
  TITLE     Characterization of Blf4, an archaeal lytic virus targeting a
            member of the Methanomicrobiales
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2643145)
  AUTHORS   Kupczok,A., Weidenbach,K., Wolf,S., Fischer,M.A., Kern,T.,
            Reetz,J., Urbanska,N., Kunzel,S., Schmitz,R.A. and Rother,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2021) Institute of Microbiology, Kiel University,
            Am Botanischen Garten 1-9, Kiel 24118, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHAVR000000000.1.
            The Methanoculleus bourgensis whole genome shotgun (WGS) project
            has the project accession NZ_JAHAVR000000000.  This version of the
            project (01) has the accession number NZ_JAHAVR010000000, and
            consists of sequences JAHAVR010000001-JAHAVR010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Michael Rother, Institut of
            Microbiology, TU Dresden, Germany.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2020
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 106.0x
            Sequencing Technology  :: Illumina; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018495055.1-RS_2025_06_04
            Annotation Date                   :: 06/04/2025 10:24:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,612
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,541
            CDSs (with protein)               :: 2,541
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 2 of 19
            Pseudo Genes (incomplete)         :: 12 of 19
            Pseudo Genes (internal stop)      :: 5 of 19
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2643145
                     /organism="Methanoculleus bourgensis"
                     /mol_type="genomic DNA"
                     /strain="E02.3"
                     /isolation_source="biogas sludge"
                     /db_xref="taxon:83986"
                     /geo_loc_name="Germany"
                     /collection_date="2013-06-13"
WGS         JAHAVR010000001-JAHAVR010000009
WGS_SCAFLD  NZ_JAHAVR010000001-NZ_JAHAVR010000009
//
LOCUS       NZ_JBOGQF010000000   1877609 bp    DNA     linear   ENV 06-JUN-2025
DEFINITION  MAG: Nitrososphaera sp. isolate SD8019_maxbin2.bin.14, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBOGQF000000000
VERSION     NZ_JBOGQF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48691622
            Assembly: GCF_050748925.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrososphaera sp. (cave metagenome)
  ORGANISM  Nitrososphaera sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Nitrososphaera.
REFERENCE   1  (bases 1 to 1877609)
  AUTHORS   Bay,S., Chown,S. and Greening,C.
  TITLE     Microbial aerotrophy enables continuous primary production in
            diverse cave ecosystems
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1877609)
  AUTHORS   Ni,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2025) Microbiology, Monash University, Innovation
            Walk, Melbourne, VIC 3800, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBOGQF000000000.1.
            The Nitrososphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBOGQF000000000.  This version of the project
            (01) has the accession number NZ_JBOGQF010000000, and consists of
            sequences JBOGQF010000001-JBOGQF010000266.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAR-2023
            Assembly Method        :: metaSPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31x
            Sequencing Technology  :: Illumina NovaSeq6000 (PE 2x150bp)
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050748925.1-RS_2025_06_06
            Annotation Date                   :: 06/06/2025 03:57:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,434
            CDSs (total)                      :: 2,395
            Genes (coding)                    :: 2,335
            CDSs (with protein)               :: 2,335
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 36
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 3 of 60
            Pseudo Genes (incomplete)         :: 57 of 60
            Pseudo Genes (internal stop)      :: 2 of 60
            Pseudo Genes (multiple problems)  :: 2 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877609
                     /organism="Nitrososphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="SD8019_maxbin2.bin.14"
                     /isolation_source="biofilm from cave"
                     /db_xref="taxon:1971748"
                     /environmental_sample
                     /geo_loc_name="Australia: Victoria"
                     /collection_date="2021-11"
                     /metagenome_source="cave metagenome"
                     /metagenomic
WGS         JBOGQF010000001-JBOGQF010000266
WGS_SCAFLD  NZ_JBOGQF010000001-NZ_JBOGQF010000266
//
LOCUS       NZ_JAQMIA010000000   2950402 bp    DNA     linear   BCT 09-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4243, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMIA000000000
VERSION     NZ_JAQMIA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788922
            Assembly: GCF_030250125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2950402)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2950402)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMIA000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMIA000000000.  This version of the
            project (01) has the accession number NZ_JAQMIA010000000, and
            consists of sequences JAQMIA010000001-JAQMIA010000120.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 110x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250125.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 12:35:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,085
            CDSs (total)                      :: 3,033
            Genes (coding)                    :: 2,923
            CDSs (with protein)               :: 2,923
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 18 of 110
            Pseudo Genes (incomplete)         :: 100 of 110
            Pseudo Genes (internal stop)      :: 12 of 110
            Pseudo Genes (multiple problems)  :: 16 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950402
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4243"
                     /isolation_source="sausage casings"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Italy"
                     /collection_date="2017"
WGS         JAQMIA010000001-JAQMIA010000120
WGS_SCAFLD  NZ_JAQMIA010000001-NZ_JAQMIA010000120
//
LOCUS       NZ_JAQMIJ010000000   2129986 bp    DNA     linear   BCT 09-JUN-2025
DEFINITION  Halobacterium salinarum strain CECT 395, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMIJ000000000
VERSION     NZ_JAQMIJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788913
            Assembly: GCF_030250285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2129986)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129986)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMIJ000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMIJ000000000.  This version of the
            project (01) has the accession number NZ_JAQMIJ010000000, and
            consists of sequences JAQMIJ010000001-JAQMIJ010000280.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 148x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250285.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 12:39:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,460
            CDSs (total)                      :: 2,408
            Genes (coding)                    :: 2,234
            CDSs (with protein)               :: 2,234
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 174
            CDSs (without protein)            :: 174
            Pseudo Genes (ambiguous residues) :: 0 of 174
            Pseudo Genes (frameshifted)       :: 14 of 174
            Pseudo Genes (incomplete)         :: 166 of 174
            Pseudo Genes (internal stop)      :: 8 of 174
            Pseudo Genes (multiple problems)  :: 12 of 174
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129986
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="CECT 395"
                     /isolation_source="salted codfish"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
WGS         JAQMIJ010000001-JAQMIJ010000280
WGS_SCAFLD  NZ_JAQMIJ010000001-NZ_JAQMIJ010000280
//
LOCUS       NZ_JAQMIE010000000   2574459 bp    DNA     linear   BCT 09-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4239, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMIE000000000
VERSION     NZ_JAQMIE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788918
            Assembly: GCF_030250225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2574459)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574459)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMIE000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMIE000000000.  This version of the
            project (01) has the accession number NZ_JAQMIE010000000, and
            consists of sequences JAQMIE010000001-JAQMIE010000143.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 123x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250225.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 12:40:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,811
            CDSs (total)                      :: 2,759
            Genes (coding)                    :: 2,645
            CDSs (with protein)               :: 2,645
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 15 of 114
            Pseudo Genes (incomplete)         :: 104 of 114
            Pseudo Genes (internal stop)      :: 11 of 114
            Pseudo Genes (multiple problems)  :: 12 of 114
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574459
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4239"
                     /isolation_source="bacon"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
WGS         JAQMIE010000001-JAQMIE010000143
WGS_SCAFLD  NZ_JAQMIE010000001-NZ_JAQMIE010000143
//
LOCUS       NZ_JAQMIC010000000   2566318 bp    DNA     linear   BCT 09-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4241, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMIC000000000
VERSION     NZ_JAQMIC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788920
            Assembly: GCF_030250165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2566318)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2566318)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMIC000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMIC000000000.  This version of the
            project (01) has the accession number NZ_JAQMIC010000000, and
            consists of sequences JAQMIC010000001-JAQMIC010000265.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 102x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250165.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 12:40:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,836
            CDSs (total)                      :: 2,786
            Genes (coding)                    :: 2,635
            CDSs (with protein)               :: 2,635
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 19 of 151
            Pseudo Genes (incomplete)         :: 142 of 151
            Pseudo Genes (internal stop)      :: 7 of 151
            Pseudo Genes (multiple problems)  :: 14 of 151
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566318
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4241"
                     /isolation_source="sausage casings"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Italy"
                     /collection_date="2017"
WGS         JAQMIC010000001-JAQMIC010000265
WGS_SCAFLD  NZ_JAQMIC010000001-NZ_JAQMIC010000265
//
LOCUS       NZ_JAQMII010000000   2474057 bp    DNA     linear   BCT 09-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4235, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMII000000000
VERSION     NZ_JAQMII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788914
            Assembly: GCF_030250295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2474057)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474057)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMII000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMII000000000.  This version of the
            project (01) has the accession number NZ_JAQMII010000000, and
            consists of sequences JAQMII010000001-JAQMII010000222.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 137x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250295.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 12:39:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,751
            CDSs (total)                      :: 2,699
            Genes (coding)                    :: 2,541
            CDSs (with protein)               :: 2,541
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 17 of 158
            Pseudo Genes (incomplete)         :: 153 of 158
            Pseudo Genes (internal stop)      :: 7 of 158
            Pseudo Genes (multiple problems)  :: 15 of 158
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474057
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4235"
                     /isolation_source="salted codfish"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
WGS         JAQMII010000001-JAQMII010000222
WGS_SCAFLD  NZ_JAQMII010000001-NZ_JAQMII010000222
//
LOCUS       NZ_JAQMID010000000   2658755 bp    DNA     linear   BCT 09-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4240, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMID000000000
VERSION     NZ_JAQMID000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788919
            Assembly: GCF_030250185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2658755)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2658755)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMID000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMID000000000.  This version of the
            project (01) has the accession number NZ_JAQMID010000000, and
            consists of sequences JAQMID010000001-JAQMID010000216.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 124x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250185.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 12:39:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,904
            CDSs (total)                      :: 2,852
            Genes (coding)                    :: 2,711
            CDSs (with protein)               :: 2,711
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 17 of 141
            Pseudo Genes (incomplete)         :: 130 of 141
            Pseudo Genes (internal stop)      :: 5 of 141
            Pseudo Genes (multiple problems)  :: 9 of 141
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2658755
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4240"
                     /isolation_source="bacon"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
WGS         JAQMID010000001-JAQMID010000216
WGS_SCAFLD  NZ_JAQMID010000001-NZ_JAQMID010000216
//
LOCUS       NZ_JAQMIG010000000   2522381 bp    DNA     linear   BCT 09-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4237, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMIG000000000
VERSION     NZ_JAQMIG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788916
            Assembly: GCF_030250325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2522381)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2522381)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMIG000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMIG000000000.  This version of the
            project (01) has the accession number NZ_JAQMIG010000000, and
            consists of sequences JAQMIG010000001-JAQMIG010000108.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 160x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250325.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 12:36:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,719
            CDSs (total)                      :: 2,666
            Genes (coding)                    :: 2,575
            CDSs (with protein)               :: 2,575
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 17 of 91
            Pseudo Genes (incomplete)         :: 84 of 91
            Pseudo Genes (internal stop)      :: 4 of 91
            Pseudo Genes (multiple problems)  :: 12 of 91
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522381
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4237"
                     /isolation_source="salted codfish"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
WGS         JAQMIG010000001-JAQMIG010000108
WGS_SCAFLD  NZ_JAQMIG010000001-NZ_JAQMIG010000108
//
LOCUS       NZ_JAQMIF010000000   2880592 bp    DNA     linear   BCT 09-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4238, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMIF000000000
VERSION     NZ_JAQMIF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788917
            Assembly: GCF_030250265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2880592)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880592)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMIF000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMIF000000000.  This version of the
            project (01) has the accession number NZ_JAQMIF010000000, and
            consists of sequences JAQMIF010000001-JAQMIF010000180.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 112x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250265.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 12:43:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,069
            CDSs (total)                      :: 3,017
            Genes (coding)                    :: 2,886
            CDSs (with protein)               :: 2,886
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 19 of 131
            Pseudo Genes (incomplete)         :: 120 of 131
            Pseudo Genes (internal stop)      :: 13 of 131
            Pseudo Genes (multiple problems)  :: 17 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880592
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4238"
                     /isolation_source="bacon"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
WGS         JAQMIF010000001-JAQMIF010000180
WGS_SCAFLD  NZ_JAQMIF010000001-NZ_JAQMIF010000180
//
LOCUS       NZ_DAOSEI010000000   2283684 bp    DNA     linear   ENV 09-JUN-2025
DEFINITION  MAG: Methanothrix soehngenii isolate AMR_MDS_1809, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAOSEI000000000
VERSION     NZ_DAOSEI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32863338
            Sequence Read Archive: SRR4236667
            Assembly: GCF_035363055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (wastewater metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2283684)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2283684)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOSEI000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAOSEI000000000.  This version of the
            project (01) has the accession number NZ_DAOSEI010000000, and
            consists of sequences DAOSEI010000001-DAOSEI010000155.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035363055.1-RS_2025_06_09
            Annotation Date                   :: 06/09/2025 13:02:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,378
            CDSs (total)                      :: 2,335
            Genes (coding)                    :: 2,285
            CDSs (with protein)               :: 2,285
            Genes (RNA)                       :: 43
            tRNAs                             :: 42
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 5 of 50
            Pseudo Genes (incomplete)         :: 46 of 50
            Pseudo Genes (internal stop)      :: 2 of 50
            Pseudo Genes (multiple problems)  :: 3 of 50
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283684
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_1809"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="China"
                     /lat_lon="30.66 N 104.06 E"
                     /collection_date="2015-12-16"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOSEI010000001-DAOSEI010000155
WGS_SCAFLD  NZ_DAOSEI010000001-NZ_DAOSEI010000155
//
LOCUS       NZ_JAGGMO010000000   1899827 bp    DNA     linear   BCT 11-JUN-2025
DEFINITION  Methanococcus voltae strain DSM 14649, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGGMO000000000
VERSION     NZ_JAGGMO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18243379
            Assembly: GCF_017875395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus voltae
  ORGANISM  Methanococcus voltae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1  (bases 1 to 1899827)
  AUTHORS   Whitman,W.
  TITLE     Genome Encyclopedia of Bacteria and Archaea VI: Functional Genomics
            of Type Strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1899827)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2021) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGGMO000000000.1.
            The Methanococcus voltae whole genome shotgun (WGS) project has the
            project accession NZ_JAGGMO000000000.  This version of the project
            (01) has the accession number NZ_JAGGMO010000000, and consists of
            sequences JAGGMO010000001-JAGGMO010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 788.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017875395.1-RS_2025_06_11
            Annotation Date                   :: 06/11/2025 10:34:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,697
            CDSs (total)                      :: 1,653
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899827
                     /organism="Methanococcus voltae"
                     /mol_type="genomic DNA"
                     /strain="DSM 14649"
                     /culture_collection="DSM:14649"
                     /db_xref="taxon:2188"
WGS         JAGGMO010000001-JAGGMO010000015
WGS_SCAFLD  NZ_JAGGMO010000001-NZ_JAGGMO010000015
//
LOCUS       NZ_BSDK01000000      2345320 bp    DNA     linear   BCT 12-JUN-2025
DEFINITION  Methanobrevibacter arboriphilus strain A2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BSDK00000000
VERSION     NZ_BSDK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00564986
            Assembly: GCF_027925065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter arboriphilus
  ORGANISM  Methanobrevibacter arboriphilus
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1
  AUTHORS   Sekiguchi,Y. and Tourlousse,D.M.
  TITLE     Reference genome sequencing for broad-spectrum identification of
            bacterial and archaeal isolates by mass spectrometry
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2345320)
  AUTHORS   Sekiguchi,Y. and Tourlousse,D.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2022) Contact:Yuji Sekiguchi National Institute
            of Advanced Industrial Science and Technology (AIST); Higashi
            1-1-1, Tsukuba, Ibaraki 305-8566, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BSDK00000000.1.
            The Methanobrevibacter arboriphilus whole genome shotgun (WGS)
            project has the project accession NZ_BSDK00000000.  This version of
            the project (01) has the accession number NZ_BSDK01000000, and
            consists of sequences BSDK01000001-BSDK01000024.
            Annotated by DFAST v.1.2.14 (https://dfast.nig.ac.jp).
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.13.1
            Genome Coverage       :: 400x
            Sequencing Technology :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027925065.1-RS_2025_06_12
            Annotation Date                   :: 06/12/2025 10:30:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,999
            CDSs (total)                      :: 1,958
            Genes (coding)                    :: 1,939
            CDSs (with protein)               :: 1,939
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 2 of 19
            Pseudo Genes (incomplete)         :: 17 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2345320
                     /organism="Methanobrevibacter arboriphilus"
                     /mol_type="genomic DNA"
                     /strain="A2"
                     /isolation_source="anaerobic sludge [ENVO:00002129]"
                     /db_xref="taxon:39441"
                     /geo_loc_name="Japan:Kitakyusyu, Anaerobic sewage
                     digester"
                     /collection_date="1983"
WGS         BSDK01000001-BSDK01000024
WGS_SCAFLD  NZ_BSDK01000001-NZ_BSDK01000024
//
LOCUS       NZ_JALJCL010000000   4031955 bp    DNA     linear   BCT 12-JUN-2025
DEFINITION  Halorientalis regularis strain TNN28, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALJCL000000000
VERSION     NZ_JALJCL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27395177
            Assembly: GCF_023698535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis regularis
  ORGANISM  Halorientalis regularis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1  (bases 1 to 4031955)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4031955)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALJCL000000000.1.
            The Halorientalis regularis whole genome shotgun (WGS) project has
            the project accession NZ_JALJCL000000000.  This version of the
            project (01) has the accession number NZ_JALJCL010000000, and
            consists of sequences JALJCL010000001-JALJCL010000045.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 130.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023698535.1-RS_2025_06_12
            Annotation Date                   :: 06/12/2025 10:18:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,290
            CDSs (total)                      :: 4,215
            Genes (coding)                    :: 4,082
            CDSs (with protein)               :: 4,082
            Genes (RNA)                       :: 75
            rRNAs                             :: 3, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2 (5S, 16S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 63
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 37 of 133
            Pseudo Genes (incomplete)         :: 93 of 133
            Pseudo Genes (internal stop)      :: 31 of 133
            Pseudo Genes (multiple problems)  :: 24 of 133
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4031955
                     /organism="Halorientalis regularis"
                     /mol_type="genomic DNA"
                     /strain="TNN28"
                     /isolation_source="marine solar saltern"
                     /type_material="type strain of Halorientalis regularis"
                     /db_xref="taxon:660518"
                     /geo_loc_name="China: Lianyungang, Jiangsu"
                     /collection_date="2008"
WGS         JALJCL010000001-JALJCL010000045
WGS_SCAFLD  NZ_JALJCL010000001-NZ_JALJCL010000045
//
LOCUS       NZ_JBNMGD010000000   1450137 bp    DNA     linear   ENV 12-JUN-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate CM_ArcMet834.157, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBNMGD000000000
VERSION     NZ_JBNMGD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45146799
            Sequence Read Archive: SRR30769957
            Assembly: GCF_050872065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1450137)
  AUTHORS   Purse,C., Parker,A., James,S.A., Baker,D.J., Moss,C.-J., Evans,R.,
            Durham,J., Funnell,S.G.P. and Carding,S.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2024) Core Bioinformatics, Quadram Institute
            Bioscience, Rosalind Franklin Rd, Norwich NR47UQ, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNMGD000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBNMGD000000000.  This version of the
            project (01) has the accession number NZ_JBNMGD010000000, and
            consists of sequences JBNMGD010000001-JBNMGD010000091.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: metawrap v. 1.2.1; megahit v. 1.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5.563934429x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050872065.1-RS_2025_06_12
            Annotation Date                   :: 06/12/2025 11:48:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,567
            CDSs (total)                      :: 1,528
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 39
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 1 (16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 6 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1450137
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="CM_ArcMet834.157"
                     /isolation_source="intestinal content"
                     /host="Macaca fascicularis"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: England"
                     /lat_lon="52.3555 N 1.1743 W"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JBNMGD010000001-JBNMGD010000091
WGS_SCAFLD  NZ_JBNMGD010000001-NZ_JBNMGD010000091
//
LOCUS       NZ_JAQMIB010000000   2932793 bp    DNA     linear   BCT 14-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4242, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMIB000000000
VERSION     NZ_JAQMIB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788921
            Assembly: GCF_030250195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2932793)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2932793)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMIB000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMIB000000000.  This version of the
            project (01) has the accession number NZ_JAQMIB010000000, and
            consists of sequences JAQMIB010000001-JAQMIB010000266.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 105x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250195.1-RS_2025_06_14
            Annotation Date                   :: 06/14/2025 11:26:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,110
            CDSs (total)                      :: 3,058
            Genes (coding)                    :: 2,887
            CDSs (with protein)               :: 2,887
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 171
            CDSs (without protein)            :: 171
            Pseudo Genes (ambiguous residues) :: 0 of 171
            Pseudo Genes (frameshifted)       :: 33 of 171
            Pseudo Genes (incomplete)         :: 158 of 171
            Pseudo Genes (internal stop)      :: 6 of 171
            Pseudo Genes (multiple problems)  :: 23 of 171
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2932793
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4242"
                     /isolation_source="sausage casings"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Italy"
                     /collection_date="2017"
WGS         JAQMIB010000001-JAQMIB010000266
WGS_SCAFLD  NZ_JAQMIB010000001-NZ_JAQMIB010000266
//
LOCUS       NZ_DAOSQJ010000000   2607792 bp    DNA     linear   ENV 16-JUN-2025
DEFINITION  MAG: Methanothrix soehngenii isolate AMR_MDS_2296, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAOSQJ000000000
VERSION     NZ_DAOSQJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32864363
            Sequence Read Archive: SRR4236674
            Assembly: GCF_035375645.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (wastewater metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2607792)
  AUTHORS   Abdulkadir,N., Saraiva,J.P., Zhang,J., Stolte,S., Gillor,O.,
            Harms,H. and Rocha,U.
  TITLE     Genome-centric analyses of 165 metagenomes show that mobile genetic
            elements are crucial for the transmission of antimicrobial
            resistance genes to pathogens in activated sludge and wastewater
  JOURNAL   Microbiol Spectr 12 (3), e0291823 (2024)
   PUBMED   38289113
REFERENCE   2  (bases 1 to 2607792)
  AUTHORS   Abdulkadir,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2023) Environmental Microbiology, Helmholtz
            Center for Environmental Research -UFZ, Permoserstr 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOSQJ000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAOSQJ000000000.  This version of the
            project (01) has the accession number NZ_DAOSQJ010000000, and
            consists of sequences DAOSQJ010000001-DAOSQJ010000079.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035375645.1-RS_2025_06_16
            Annotation Date                   :: 06/16/2025 11:40:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,652
            CDSs (total)                      :: 2,608
            Genes (coding)                    :: 2,576
            CDSs (with protein)               :: 2,576
            Genes (RNA)                       :: 44
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 9 of 32
            Pseudo Genes (incomplete)         :: 27 of 32
            Pseudo Genes (internal stop)      :: 2 of 32
            Pseudo Genes (multiple problems)  :: 6 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607792
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="AMR_MDS_2296"
                     /isolation_source="Activated sludge of municipal
                     wastewater treatment plants"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /lat_lon="43.77 N 142.37 E"
                     /collection_date="2015-04-20"
                     /metagenome_source="wastewater metagenome"
                     /metagenomic
WGS         DAOSQJ010000001-DAOSQJ010000079
WGS_SCAFLD  NZ_DAOSQJ010000001-NZ_DAOSQJ010000079
//
LOCUS       NZ_JBMNHV010000000   1884225 bp    DNA     linear   ENV 18-JUN-2025
DEFINITION  MAG: Methanosphaera sp. isolate SBF912LR0HQ0118, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBMNHV000000000
VERSION     NZ_JBMNHV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44462095
            Sequence Read Archive: SRR31065934, SRR31061296, SRR31061295
            Assembly: GCF_050950565.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera sp. (anaerobic digester metagenome)
  ORGANISM  Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1884225)
  AUTHORS   Friedline,S.E. and Ziels,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2024) Civil Engineering, University of British
            Columbia, 2002 - 6250 Applied Science Lane, Vancouver, BC V6T 1Z4,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMNHV000000000.1.
            The Methanosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMNHV000000000.  This version of the project
            (01) has the accession number NZ_JBMNHV010000000, and consists of
            sequences JBMNHV010000001-JBMNHV010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: metaFlye v. 2.9.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.605865x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050950565.1-RS_2025_06_18
            Annotation Date                   :: 06/18/2025 02:51:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,823
            CDSs (total)                      :: 1,768
            Genes (coding)                    :: 1,753
            CDSs (with protein)               :: 1,753
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 3 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884225
                     /organism="Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="SBF912LR0HQ0118"
                     /isolation_source="biomass from liquid digestate stored in
                     the CSTR at the Surrey Biofuel Facility"
                     /db_xref="taxon:2666342"
                     /environmental_sample
                     /geo_loc_name="Canada: British Columbia, Surrey"
                     /lat_lon="49.1798 N 122.6892 W"
                     /collection_date="2021-07-27/2022-05-02"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JBMNHV010000001-JBMNHV010000004
WGS_SCAFLD  NZ_JBMNHV010000001-NZ_JBMNHV010000004
//
LOCUS       NZ_JBMNHX010000000   2086048 bp    DNA     linear   ENV 18-JUN-2025
DEFINITION  MAG: Methanobacterium sp. isolate SBF912LR0HQ0213, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBMNHX000000000
VERSION     NZ_JBMNHX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44462190
            Sequence Read Archive: SRR31065934, SRR31061296, SRR31061295
            Assembly: GCF_050950605.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium sp. (anaerobic digester metagenome)
  ORGANISM  Methanobacterium sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2086048)
  AUTHORS   Friedline,S.E. and Ziels,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2024) Civil Engineering, University of British
            Columbia, 2002 - 6250 Applied Science Lane, Vancouver, BC V6T 1Z4,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMNHX000000000.1.
            The Methanobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMNHX000000000.  This version of the project
            (01) has the accession number NZ_JBMNHX010000000, and consists of
            sequences JBMNHX010000001-JBMNHX010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: metaFlye v. 2.9.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.50945x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050950605.1-RS_2025_06_18
            Annotation Date                   :: 06/18/2025 02:57:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,119
            CDSs (total)                      :: 2,066
            Genes (coding)                    :: 2,048
            CDSs (with protein)               :: 2,048
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 7 of 18
            Pseudo Genes (incomplete)         :: 13 of 18
            Pseudo Genes (internal stop)      :: 1 of 18
            Pseudo Genes (multiple problems)  :: 3 of 18
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086048
                     /organism="Methanobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="SBF912LR0HQ0213"
                     /isolation_source="biomass from liquid digestate stored in
                     the CSTR at the Surrey Biofuel Facility"
                     /db_xref="taxon:2164"
                     /environmental_sample
                     /geo_loc_name="Canada: British Columbia, Surrey"
                     /lat_lon="49.1798 N 122.6892 W"
                     /collection_date="2021-07-27/2022-05-02"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JBMNHX010000001-JBMNHX010000005
WGS_SCAFLD  NZ_JBMNHX010000001-NZ_JBMNHX010000005
//
LOCUS       NZ_JBMNHW010000000   2016828 bp    DNA     linear   ENV 18-JUN-2025
DEFINITION  MAG: Methanobrevibacter boviskoreani isolate SBF912LR0HQ0214, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBMNHW000000000
VERSION     NZ_JBMNHW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44462191
            Sequence Read Archive: SRR31065934, SRR31061296, SRR31061295
            Assembly: GCF_050950585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter boviskoreani (anaerobic digester metagenome)
  ORGANISM  Methanobrevibacter boviskoreani
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2016828)
  AUTHORS   Friedline,S.E. and Ziels,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2024) Civil Engineering, University of British
            Columbia, 2002 - 6250 Applied Science Lane, Vancouver, BC V6T 1Z4,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMNHW000000000.1.
            The Methanobrevibacter boviskoreani whole genome shotgun (WGS)
            project has the project accession NZ_JBMNHW000000000.  This version
            of the project (01) has the accession number NZ_JBMNHW010000000,
            and consists of sequences JBMNHW010000001-JBMNHW010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: metaFlye v. 2.9.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.738333x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050950585.1-RS_2025_06_18
            Annotation Date                   :: 06/18/2025 02:54:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,777
            CDSs (total)                      :: 1,730
            Genes (coding)                    :: 1,704
            CDSs (with protein)               :: 1,704
            Genes (RNA)                       :: 47
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 15 of 26
            Pseudo Genes (incomplete)         :: 11 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 4 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016828
                     /organism="Methanobrevibacter boviskoreani"
                     /mol_type="genomic DNA"
                     /isolate="SBF912LR0HQ0214"
                     /isolation_source="biomass from liquid digestate stored in
                     the CSTR at the Surrey Biofuel Facility"
                     /db_xref="taxon:1348249"
                     /environmental_sample
                     /geo_loc_name="Canada: British Columbia, Surrey"
                     /lat_lon="49.1798 N 122.6892 W"
                     /collection_date="2021-07-27/2022-05-02"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JBMNHW010000001-JBMNHW010000012
WGS_SCAFLD  NZ_JBMNHW010000001-NZ_JBMNHW010000012
//
LOCUS       NZ_JBMNQR010000000   1845316 bp    DNA     linear   ENV 18-JUN-2025
DEFINITION  MAG: Methanoculleus thermophilus isolate SBF912SR2HQ0079, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBMNQR000000000
VERSION     NZ_JBMNQR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44462334
            Sequence Read Archive: SRR31066337
            Assembly: GCF_050944235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus thermophilus (anaerobic digester metagenome)
  ORGANISM  Methanoculleus thermophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 1845316)
  AUTHORS   Friedline,S. and Ziels,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2024) Civil Engineering, University of British
            Columbia, 2002 - 6250 Applied Science Lane, Vancouver, BC V6T 1Z4,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMNQR000000000.1.
            The Methanoculleus thermophilus whole genome shotgun (WGS) project
            has the project accession NZ_JBMNQR000000000.  This version of the
            project (01) has the accession number NZ_JBMNQR010000000, and
            consists of sequences JBMNQR010000001-JBMNQR010000134.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 41.82087x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050944235.1-RS_2025_06_18
            Annotation Date                   :: 06/18/2025 02:54:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,001
            CDSs (total)                      :: 1,950
            Genes (coding)                    :: 1,912
            CDSs (with protein)               :: 1,912
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 1 of 38
            Pseudo Genes (incomplete)         :: 37 of 38
            Pseudo Genes (internal stop)      :: 0 of 38
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845316
                     /organism="Methanoculleus thermophilus"
                     /mol_type="genomic DNA"
                     /isolate="SBF912SR2HQ0079"
                     /isolation_source="biomass from liquid digestate stored in
                     the CSTR at the Surrey Biofuel Facility"
                     /db_xref="taxon:2200"
                     /environmental_sample
                     /geo_loc_name="Canada: British Columbia, Surrey"
                     /lat_lon="49.1798 N 122.6892 W"
                     /collection_date="2021-04-27"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JBMNQR010000001-JBMNQR010000134
WGS_SCAFLD  NZ_JBMNQR010000001-NZ_JBMNQR010000134
//
LOCUS       NZ_JBMNQJ010000000   2376604 bp    DNA     linear   ENV 18-JUN-2025
DEFINITION  MAG: Methanothrix sp. isolate SBF912SR7HQ0002, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMNQJ000000000
VERSION     NZ_JBMNQJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44462404
            Sequence Read Archive: SRR31066037
            Assembly: GCF_050944075.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix sp. (anaerobic digester metagenome)
  ORGANISM  Methanothrix sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2376604)
  AUTHORS   Friedline,S. and Ziels,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2024) Civil Engineering, University of British
            Columbia, 2002 - 6250 Applied Science Lane, Vancouver, BC V6T 1Z4,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMNQJ000000000.1.
            The Methanothrix sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBMNQJ000000000.  This version of the project
            (01) has the accession number NZ_JBMNQJ010000000, and consists of
            sequences JBMNQJ010000001-JBMNQJ010000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1162.6722x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050944075.1-RS_2025_06_18
            Annotation Date                   :: 06/18/2025 03:14:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,367
            CDSs (total)                      :: 2,320
            Genes (coding)                    :: 2,281
            CDSs (with protein)               :: 2,281
            Genes (RNA)                       :: 47
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 11 of 39
            Pseudo Genes (incomplete)         :: 34 of 39
            Pseudo Genes (internal stop)      :: 7 of 39
            Pseudo Genes (multiple problems)  :: 11 of 39
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376604
                     /organism="Methanothrix sp."
                     /mol_type="genomic DNA"
                     /isolate="SBF912SR7HQ0002"
                     /isolation_source="biomass from liquid digestate stored in
                     the CSTR at the Surrey Biofuel Facility"
                     /db_xref="taxon:90426"
                     /environmental_sample
                     /geo_loc_name="Canada: British Columbia, Surrey"
                     /lat_lon="49.1798 N 122.6892 W"
                     /collection_date="2022-04-28"
                     /metagenome_source="anaerobic digester metagenome"
                     /metagenomic
WGS         JBMNQJ010000001-JBMNQJ010000064
WGS_SCAFLD  NZ_JBMNQJ010000001-NZ_JBMNQJ010000064
//
LOCUS       NZ_JBPBWC010000000   5329884 bp    DNA     linear   BCT 19-JUN-2025
DEFINITION  Halomicrococcus sp. NG-SE-24, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPBWC000000000
VERSION     NZ_JBPBWC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48978117
            Assembly: GCF_050954125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicrococcus sp. NG-SE-24
  ORGANISM  Halomicrococcus sp. NG-SE-24
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halomicrococcus.
REFERENCE   1  (bases 1 to 5329884)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5329884)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPBWC000000000.1.
            The Halomicrococcus sp. NG-SE-24 whole genome shotgun (WGS) project
            has the project accession NZ_JBPBWC000000000.  This version of the
            project (01) has the accession number NZ_JBPBWC010000000, and
            consists of sequences JBPBWC010000001-JBPBWC010000055.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 450.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_050954125.1-RS_2025_06_18
            Annotation Date                   :: 06/18/2025 11:35:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,321
            CDSs (total)                      :: 5,262
            Genes (coding)                    :: 5,074
            CDSs (with protein)               :: 5,074
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 2 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 188
            CDSs (without protein)            :: 188
            Pseudo Genes (ambiguous residues) :: 0 of 188
            Pseudo Genes (frameshifted)       :: 71 of 188
            Pseudo Genes (incomplete)         :: 114 of 188
            Pseudo Genes (internal stop)      :: 43 of 188
            Pseudo Genes (multiple problems)  :: 32 of 188
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5329884
                     /organism="Halomicrococcus sp. NG-SE-24"
                     /mol_type="genomic DNA"
                     /strain="NG-SE-24"
                     /isolation_source="Tianjin Nangang mud water"
                     /db_xref="taxon:3436928"
                     /geo_loc_name="China"
                     /collection_date="2021-07"
WGS         JBPBWC010000001-JBPBWC010000055
WGS_SCAFLD  NZ_JBPBWC010000001-NZ_JBPBWC010000055
//
LOCUS       NZ_CASEFK010000000   1589417 bp    DNA     linear   ENV 20-JUN-2025
DEFINITION  Methanobrevibacter woesei isolate SI.B47.metabat-bins.32, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CASEFK000000000
VERSION     NZ_CASEFK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA112663211
            Assembly: GCF_949287205.1
KEYWORDS    WGS; ENV; RefSeq.
SOURCE      Methanobrevibacter woesei
  ORGANISM  Methanobrevibacter woesei
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1589417)
  AUTHORS   Glendinning,L. and Kebede,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2023) Addis Ababa University, Microbial, cellular
            and Molecular Biology, NBH1, 4killo King George VI St, Addis Ababa,
            Ethiopia, Ethiopia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CASEFK000000000.1.
            The Methanobrevibacter woesei whole genome shotgun (WGS) project
            has the project accession NZ_CASEFK000000000.  This version of the
            project (01) has the accession number NZ_CASEFK010000000, and
            consists of sequences CASEFK010000001-CASEFK010000020.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_949287205.1-RS_2025_06_19
            Annotation Date                   :: 06/19/2025 10:44:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,686
            CDSs (total)                      :: 1,646
            Genes (coding)                    :: 1,634
            CDSs (with protein)               :: 1,634
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 9 of 12
            Pseudo Genes (internal stop)      :: 2 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589417
                     /organism="Methanobrevibacter woesei"
                     /mol_type="genomic DNA"
                     /isolate="SI.B47.metabat-bins.32"
                     /isolation_source="metagenome"
                     /db_xref="taxon:190976"
                     /environmental_sample
WGS         CASEFK010000001-CASEFK010000020
WGS_SCAFLD  NZ_CASEFK010000001-NZ_CASEFK010000020
//
LOCUS       NZ_QFDM01000000      2455266 bp    DNA     linear   BCT 26-JUN-2025
DEFINITION  Methanoculleus oceani strain CWC-02, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QFDM00000000
VERSION     NZ_QFDM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09096969
            Assembly: GCF_023702065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus oceani
  ORGANISM  Methanoculleus oceani
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2455266)
  AUTHORS   Wei,W.-H., Chen,W.-C., Lai,M.-C. and Chen,S.-C.
  TITLE     Isolation and characterization of genus Methanoculleus species and
            their viruses from deep sea marine sediment offshore southwestern
            Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2455266)
  AUTHORS   Wei,W.-H., Chen,W.-C., Lai,M.-C. and Chen,S.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAY-2018) Department of Life Sciences, National Chung
            Hsing University, 145 Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QFDM00000000.1.
            The Methanoculleus oceani whole genome shotgun (WGS) project has
            the project accession NZ_QFDM00000000.  This version of the project
            (01) has the accession number NZ_QFDM01000000, and consists of
            sequences QFDM01000001-QFDM01000003.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Department of Life Sciences,
            National Chung Hsing University, Taichung, Taiwan. PI: Prof.
            Mei-Chin Lai.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2017
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 408.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023702065.1-RS_2025_06_26
            Annotation Date                   :: 06/26/2025 12:08:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,461
            CDSs (total)                      :: 2,408
            Genes (coding)                    :: 2,399
            CDSs (with protein)               :: 2,399
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 9 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455266
                     /organism="Methanoculleus oceani"
                     /mol_type="genomic DNA"
                     /strain="CWC-02"
                     /isolation_source="marine sediment"
                     /type_material="type strain of Methanoculleus oceani"
                     /db_xref="taxon:2184756"
                     /geo_loc_name="Taiwan: South China Sea"
                     /lat_lon="22.2142 N 119.9145 E"
                     /altitude="-1221 m"
                     /collection_date="2009-06"
                     /identified_by="Wen-Hsin Wei, Wen-Chieh Chen, Mei-Chin
                     Lai, Sheng-Chung Chen"
WGS         QFDM01000001-QFDM01000003
WGS_SCAFLD  NZ_QFDM01000001-NZ_QFDM01000003
//
LOCUS       NZ_JAQMIH010000000   2999848 bp    DNA     linear   BCT 30-JUN-2025
DEFINITION  Halobacterium salinarum strain UC4236, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQMIH000000000
VERSION     NZ_JAQMIH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32788915
            Assembly: GCF_030250245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium salinarum
  ORGANISM  Halobacterium salinarum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 2999848)
  AUTHORS   Fontana,A., Falasconi,I., Bellassi,P., Fanfoni,E., Puglisi,E. and
            Morelli,L.
  TITLE     Comparative Genomics of Halobacterium salinarum Strains Isolated
            from Salted Foods Reveals Protechnological Genes for Food
            Applications
  JOURNAL   Microorganisms 11 (3), 587 (2023)
   PUBMED   36985161
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2999848)
  AUTHORS   Fontana,A., Bellassi,P. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2023) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQMIH000000000.1.
            The Halobacterium salinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAQMIH000000000.  This version of the
            project (01) has the accession number NZ_JAQMIH010000000, and
            consists of sequences JAQMIH010000001-JAQMIH010000386.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030250245.1-RS_2025_06_30
            Annotation Date                   :: 06/30/2025 12:19:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,274
            CDSs (total)                      :: 3,229
            Genes (coding)                    :: 2,991
            CDSs (with protein)               :: 2,991
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 238
            CDSs (without protein)            :: 238
            Pseudo Genes (ambiguous residues) :: 0 of 238
            Pseudo Genes (frameshifted)       :: 32 of 238
            Pseudo Genes (incomplete)         :: 223 of 238
            Pseudo Genes (internal stop)      :: 17 of 238
            Pseudo Genes (multiple problems)  :: 29 of 238
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999848
                     /organism="Halobacterium salinarum"
                     /mol_type="genomic DNA"
                     /strain="UC4236"
                     /isolation_source="salted codfish"
                     /db_xref="taxon:2242"
                     /geo_loc_name="Spain"
                     /collection_date="2017"
WGS         JAQMIH010000001-JAQMIH010000386
WGS_SCAFLD  NZ_JAQMIH010000001-NZ_JAQMIH010000386
//
LOCUS       NZ_JARRCX010000000   2425208 bp    DNA     linear   BCT 30-JUN-2025
DEFINITION  Methanobacterium formicicum strain MCMA1521, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRCX000000000
VERSION     NZ_JARRCX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34002612
            Assembly: GCF_029601605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobacterium formicicum
  ORGANISM  Methanobacterium formicicum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2425208)
  AUTHORS   Yadav,K., Pore,S.D., Dagar,S. and Dhakephalkar,P.K.
  TITLE     Whole genome sequence of Methanobacterium formicium isolated from
            Krishna River sediment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2425208)
  AUTHORS   Yadav,K., Pore,S.D., Dagar,S. and Dhakephalkar,P.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2023) Bioenergy, Agharkar Research Institute, G.G
            Agarkar road, Pune, Maharastra 411004, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRCX000000000.1.
            The Methanobacterium formicicum whole genome shotgun (WGS) project
            has the project accession NZ_JARRCX000000000.  This version of the
            project (01) has the accession number NZ_JARRCX010000000, and
            consists of sequences JARRCX010000001-JARRCX010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029601605.1-RS_2025_06_30
            Annotation Date                   :: 06/30/2025 11:57:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,443
            CDSs (total)                      :: 2,390
            Genes (coding)                    :: 2,380
            CDSs (with protein)               :: 2,380
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 0 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425208
                     /organism="Methanobacterium formicicum"
                     /mol_type="genomic DNA"
                     /strain="MCMA1521"
                     /isolation_source="Sediment sample"
                     /db_xref="taxon:2162"
                     /geo_loc_name="India: Andaman Basin"
                     /collection_date="2016-10"
WGS         JARRCX010000001-JARRCX010000048
WGS_SCAFLD  NZ_JARRCX010000001-NZ_JARRCX010000048
//
LOCUS       NZ_BAAABJ010000000   1755431 bp    DNA     linear   BCT 30-JUN-2025
DEFINITION  Methanococcus maripaludis strain Mic1c10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BAAABJ000000000
VERSION     NZ_BAAABJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00656837
            Sequence Read Archive: DRR524101
            Assembly: GCF_040362185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcus maripaludis
  ORGANISM  Methanococcus maripaludis
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
REFERENCE   1
  AUTHORS   Kawaichi,S., Yee,M.O., Fiutowski,J., Kotoky,R. and Rotaru,A.-E.
  TITLE     Microbially induced iron corrosion by Methanococcus maripaludis
            Mic1c10
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1755431)
  AUTHORS   Kawaichi,S., Rotaru,A.-E. and Kotoky,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2024) Contact:Satoshi Kawaichi University of
            Southern Denmark, Department of Biology; Campusvej 55, Odense 5230,
            Denmark URL :http://www.sdu.dk/en/Om_SDU/Institutter_centre/
            I_Biologi.aspx
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BAAABJ000000000.1.
            The Methanococcus maripaludis whole genome shotgun (WGS) project
            has the project accession NZ_BAAABJ000000000.  This version of the
            project (01) has the accession number NZ_BAAABJ010000000, and
            consists of sequences BAAABJ010000001-BAAABJ010000038.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.15.3
            Genome Coverage       :: 1099x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040362185.1-RS_2025_06_30
            Annotation Date                   :: 06/30/2025 13:02:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,889
            CDSs (total)                      :: 1,841
            Genes (coding)                    :: 1,813
            CDSs (with protein)               :: 1,813
            Genes (RNA)                       :: 48
            rRNAs                             :: 4, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 13 of 28
            Pseudo Genes (incomplete)         :: 16 of 28
            Pseudo Genes (internal stop)      :: 2 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1755431
                     /organism="Methanococcus maripaludis"
                     /mol_type="genomic DNA"
                     /strain="Mic1c10"
                     /db_xref="taxon:39152"
                     /geo_loc_name="Japan"
                     /collection_date="2017-11-06"
WGS         BAAABJ010000001-BAAABJ010000038
WGS_SCAFLD  NZ_BAAABJ010000001-NZ_BAAABJ010000038
//
LOCUS       NZ_JAKRVY010000000   3289322 bp    DNA     linear   BCT 01-JUL-2025
DEFINITION  Natranaeroarchaeum aerophilus strain AArc-St1-1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAKRVY000000000
VERSION     NZ_JAKRVY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25827068
            Assembly: GCF_023638055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natranaeroarchaeum aerophilus
  ORGANISM  Natranaeroarchaeum aerophilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronoarchaeaceae;
            Natranaeroarchaeum.
REFERENCE   1  (bases 1 to 3289322)
  AUTHORS   Sorokin,D.Y., Elcheninov,A.G., Khizhniak,T.V., Koenen,M.,
            Bale,N.J., Damste,J.S.S. and Kublanov,I.V.
  TITLE     Natronocalculus amylovorans gen. nov., sp. nov., and
            Natranaeroarchaeum aerophilus sp. nov., dominant culturable
            amylolytic natronoarchaea from hypersaline soda lakes in
            southwestern Siberia
  JOURNAL   Syst Appl Microbiol 45 (4), 126336 (2022)
   PUBMED   35644061
REFERENCE   2  (bases 1 to 3289322)
  AUTHORS   Elcheninov,A.G., Sorokin,D.Y. and Kublanov,I.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2022) Winogradsky Institute of Microbiology,
            Research Center of Biotechnology RAS, 60 let Oktjabrja pr-t, 7,
            bld. 2, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKRVY000000000.1.
            The Natranaeroarchaeum aerophilus whole genome shotgun (WGS)
            project has the project accession NZ_JAKRVY000000000.  This version
            of the project (01) has the accession number NZ_JAKRVY010000000,
            and consists of sequences JAKRVY010000001-JAKRVY010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Dr. D.Y. Sorokin
            (Laboratory of Ecology and Geochemical Activity of Microorganisms,
            Research Center of Biotechnology RAS).
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: SPAdes v. 3.15.2; Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 473.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023638055.1-RS_2025_07_01
            Annotation Date                   :: 07/01/2025 11:18:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,397
            CDSs (total)                      :: 3,344
            Genes (coding)                    :: 3,297
            CDSs (with protein)               :: 3,297
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 14 of 47
            Pseudo Genes (incomplete)         :: 39 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 9 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3289322
                     /organism="Natranaeroarchaeum aerophilus"
                     /mol_type="genomic DNA"
                     /strain="AArc-St1-1"
                     /isolation_source="hypersaline soda lake"
                     /type_material="type strain of Natranaeroarchaeum
                     aerophilum"
                     /db_xref="taxon:2917711"
                     /geo_loc_name="Russia: Kulunda Steppe, Altai region"
                     /collection_date="2017-07"
WGS         JAKRVY010000001-JAKRVY010000032
WGS_SCAFLD  NZ_JAKRVY010000001-NZ_JAKRVY010000032
//
LOCUS       NZ_JBNTJX010000000   4404156 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halobaculum sp. EA56, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTJX000000000
VERSION     NZ_JBNTJX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48402978
            Assembly: GCF_051195075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum sp. EA56
  ORGANISM  Halobaculum sp. EA56
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 4404156)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4404156)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTJX000000000.1.
            The Halobaculum sp. EA56 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTJX000000000.  This version of the project
            (01) has the accession number NZ_JBNTJX010000000, and consists of
            sequences JBNTJX010000001-JBNTJX010000135.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195075.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:44:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,522
            CDSs (total)                      :: 4,464
            Genes (coding)                    :: 4,356
            CDSs (with protein)               :: 4,356
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 5, 2 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 11 of 108
            Pseudo Genes (incomplete)         :: 90 of 108
            Pseudo Genes (internal stop)      :: 12 of 108
            Pseudo Genes (multiple problems)  :: 5 of 108
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4404156
                     /organism="Halobaculum sp. EA56"
                     /mol_type="genomic DNA"
                     /strain="EA56"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421648"
                     /geo_loc_name="Ethiopia: Oromia"
                     /collection_date="2022-11"
WGS         JBNTJX010000001-JBNTJX010000135
WGS_SCAFLD  NZ_JBNTJX010000001-NZ_JBNTJX010000135
//
LOCUS       NZ_JBNTJZ010000000   2757854 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Haloplanus sp. C73, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTJZ000000000
VERSION     NZ_JBNTJZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48403381
            Assembly: GCF_051195115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloplanus sp. C73
  ORGANISM  Haloplanus sp. C73
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloplanus.
REFERENCE   1  (bases 1 to 2757854)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2757854)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTJZ000000000.1.
            The Haloplanus sp. C73 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTJZ000000000.  This version of the project
            (01) has the accession number NZ_JBNTJZ010000000, and consists of
            sequences JBNTJZ010000001-JBNTJZ010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195115.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:42:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,972
            CDSs (total)                      :: 2,919
            Genes (coding)                    :: 2,890
            CDSs (with protein)               :: 2,890
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 7 of 29
            Pseudo Genes (incomplete)         :: 24 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2757854
                     /organism="Haloplanus sp. C73"
                     /mol_type="genomic DNA"
                     /strain="C73"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421641"
                     /geo_loc_name="Nigeria: Lagos"
                     /collection_date="2022-11"
WGS         JBNTJZ010000001-JBNTJZ010000015
WGS_SCAFLD  NZ_JBNTJZ010000001-NZ_JBNTJZ010000015
//
LOCUS       NZ_JBLZNH010000000   3181646 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halorubrum sp. HHNYT27, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLZNH000000000
VERSION     NZ_JBLZNH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47119042
            Assembly: GCF_051194135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. HHNYT27
  ORGANISM  Halorubrum sp. HHNYT27
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3181646)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3181646)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLZNH000000000.1.
            The Halorubrum sp. HHNYT27 whole genome shotgun (WGS) project has
            the project accession NZ_JBLZNH000000000.  This version of the
            project (01) has the accession number NZ_JBLZNH010000000, and
            consists of sequences JBLZNH010000001-JBLZNH010000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 700.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051194135.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:30:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,216
            CDSs (total)                      :: 3,162
            Genes (coding)                    :: 3,116
            CDSs (with protein)               :: 3,116
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 14 of 46
            Pseudo Genes (incomplete)         :: 37 of 46
            Pseudo Genes (internal stop)      :: 6 of 46
            Pseudo Genes (multiple problems)  :: 10 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3181646
                     /organism="Halorubrum sp. HHNYT27"
                     /mol_type="genomic DNA"
                     /strain="HHNYT27"
                     /isolation_source="saline soil"
                     /db_xref="taxon:3402275"
                     /geo_loc_name="China"
                     /collection_date="2023-05"
WGS         JBLZNH010000001-JBLZNH010000011
WGS_SCAFLD  NZ_JBLZNH010000001-NZ_JBLZNH010000011
//
LOCUS       NZ_JBNTJU010000000   3519858 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halococcus sp. AFM35, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTJU000000000
VERSION     NZ_JBNTJU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48402341
            Assembly: GCF_051195015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus sp. AFM35
  ORGANISM  Halococcus sp. AFM35
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 3519858)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3519858)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTJU000000000.1.
            The Halococcus sp. AFM35 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTJU000000000.  This version of the project
            (01) has the accession number NZ_JBNTJU010000000, and consists of
            sequences JBNTJU010000001-JBNTJU010000111.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195015.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:38:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,659
            CDSs (total)                      :: 3,608
            Genes (coding)                    :: 3,509
            CDSs (with protein)               :: 3,509
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 25 of 99
            Pseudo Genes (incomplete)         :: 89 of 99
            Pseudo Genes (internal stop)      :: 3 of 99
            Pseudo Genes (multiple problems)  :: 17 of 99
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3519858
                     /organism="Halococcus sp. AFM35"
                     /mol_type="genomic DNA"
                     /strain="AFM35"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421653"
                     /geo_loc_name="Ethiopia: Oromia"
                     /collection_date="2022-11"
WGS         JBNTJU010000001-JBNTJU010000111
WGS_SCAFLD  NZ_JBNTJU010000001-NZ_JBNTJU010000111
//
LOCUS       NZ_JBLZNI010000000   3500319 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halorubrum sp. N11, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLZNI000000000
VERSION     NZ_JBLZNI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47119137
            Assembly: GCF_051194165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. N11
  ORGANISM  Halorubrum sp. N11
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3500319)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3500319)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLZNI000000000.1.
            The Halorubrum sp. N11 whole genome shotgun (WGS) project has the
            project accession NZ_JBLZNI000000000.  This version of the project
            (01) has the accession number NZ_JBLZNI010000000, and consists of
            sequences JBLZNI010000001-JBLZNI010000056.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 900.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051194165.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:33:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,526
            CDSs (total)                      :: 3,473
            Genes (coding)                    :: 3,371
            CDSs (with protein)               :: 3,371
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 22 of 102
            Pseudo Genes (incomplete)         :: 88 of 102
            Pseudo Genes (internal stop)      :: 16 of 102
            Pseudo Genes (multiple problems)  :: 21 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3500319
                     /organism="Halorubrum sp. N11"
                     /mol_type="genomic DNA"
                     /strain="N11"
                     /isolation_source="Brine of East Taigener Salt Lake"
                     /db_xref="taxon:3402276"
                     /geo_loc_name="China"
                     /collection_date="2020-08"
WGS         JBLZNI010000001-JBLZNI010000056
WGS_SCAFLD  NZ_JBLZNI010000001-NZ_JBLZNI010000056
//
LOCUS       NZ_JBNTKC010000000   3140575 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halarchaeum sp. P4, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTKC000000000
VERSION     NZ_JBNTKC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48404656
            Assembly: GCF_051195175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halarchaeum sp. P4
  ORGANISM  Halarchaeum sp. P4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1  (bases 1 to 3140575)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3140575)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTKC000000000.1.
            The Halarchaeum sp. P4 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTKC000000000.  This version of the project
            (01) has the accession number NZ_JBNTKC010000000, and consists of
            sequences JBNTKC010000001-JBNTKC010000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195175.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:39:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,214
            CDSs (total)                      :: 3,162
            Genes (coding)                    :: 3,141
            CDSs (with protein)               :: 3,141
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 4 of 21
            Pseudo Genes (incomplete)         :: 19 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 5 of 21
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3140575
                     /organism="Halarchaeum sp. P4"
                     /mol_type="genomic DNA"
                     /strain="P4"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421639"
                     /geo_loc_name="Nigeria: Port Harcourt"
                     /collection_date="2022-11"
WGS         JBNTKC010000001-JBNTKC010000010
WGS_SCAFLD  NZ_JBNTKC010000001-NZ_JBNTKC010000010
//
LOCUS       NZ_JBPEHK010000000   1697909 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Methanothermobacter sp. DSM 3267, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPEHK000000000
VERSION     NZ_JBPEHK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14908460
            Assembly: GCF_051201115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanothermobacter sp. DSM 3267
  ORGANISM  Methanothermobacter sp. DSM 3267
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanothermobacter.
REFERENCE   1  (bases 1 to 1697909)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1697909)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2025) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPEHK000000000.1.
            The Methanothermobacter sp. DSM 3267 whole genome shotgun (WGS)
            project has the project accession NZ_JBPEHK000000000.  This version
            of the project (01) has the accession number NZ_JBPEHK010000000,
            and consists of sequences JBPEHK010000001-JBPEHK010000005.
            pi_orcid: https://orcid.org/0000-0002-5144-6200.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 587.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051201115.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 23:36:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,884
            CDSs (total)                      :: 1,841
            Genes (coding)                    :: 1,814
            CDSs (with protein)               :: 1,814
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 14 of 27
            Pseudo Genes (incomplete)         :: 12 of 27
            Pseudo Genes (internal stop)      :: 2 of 27
            Pseudo Genes (multiple problems)  :: 1 of 27
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697909
                     /organism="Methanothermobacter sp. DSM 3267"
                     /mol_type="genomic DNA"
                     /strain="DSM 3267"
                     /culture_collection="DSM:3267"
                     /db_xref="taxon:3381696"
                     /geo_loc_name="Germany"
WGS         JBPEHK010000001-JBPEHK010000005
WGS_SCAFLD  NZ_JBPEHK010000001-NZ_JBPEHK010000005
//
LOCUS       NZ_JBNTJY010000000   2992984 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halolamina sp. C58, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTJY000000000
VERSION     NZ_JBNTJY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48403369
            Assembly: GCF_051195095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halolamina sp. C58
  ORGANISM  Halolamina sp. C58
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae.
REFERENCE   1  (bases 1 to 2992984)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2992984)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTJY000000000.1.
            The Halolamina sp. C58 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTJY000000000.  This version of the project
            (01) has the accession number NZ_JBNTJY010000000, and consists of
            sequences JBNTJY010000001-JBNTJY010000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195095.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:39:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,181
            CDSs (total)                      :: 3,131
            Genes (coding)                    :: 3,101
            CDSs (with protein)               :: 3,101
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 10 of 30
            Pseudo Genes (incomplete)         :: 22 of 30
            Pseudo Genes (internal stop)      :: 3 of 30
            Pseudo Genes (multiple problems)  :: 5 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2992984
                     /organism="Halolamina sp. C58"
                     /mol_type="genomic DNA"
                     /strain="C58"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421640"
                     /geo_loc_name="Nigeria: Lagos"
                     /collection_date="2022-11"
WGS         JBNTJY010000001-JBNTJY010000006
WGS_SCAFLD  NZ_JBNTJY010000001-NZ_JBNTJY010000006
//
LOCUS       NZ_JBNTKA010000000   2877133 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halobaculum sp. D14, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTKA000000000
VERSION     NZ_JBNTKA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48403482
            Assembly: GCF_051195135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum sp. D14
  ORGANISM  Halobaculum sp. D14
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 2877133)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2877133)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTKA000000000.1.
            The Halobaculum sp. D14 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTKA000000000.  This version of the project
            (01) has the accession number NZ_JBNTKA010000000, and consists of
            sequences JBNTKA010000001-JBNTKA010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195135.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:41:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,974
            CDSs (total)                      :: 2,923
            Genes (coding)                    :: 2,893
            CDSs (with protein)               :: 2,893
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 8 of 30
            Pseudo Genes (incomplete)         :: 22 of 30
            Pseudo Genes (internal stop)      :: 4 of 30
            Pseudo Genes (multiple problems)  :: 3 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2877133
                     /organism="Halobaculum sp. D14"
                     /mol_type="genomic DNA"
                     /strain="D14"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421642"
                     /geo_loc_name="Nigeria: Lagos"
                     /collection_date="2022-11"
WGS         JBNTKA010000001-JBNTKA010000009
WGS_SCAFLD  NZ_JBNTKA010000001-NZ_JBNTKA010000009
//
LOCUS       NZ_JBNTKB010000000   2828201 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halobaculum sp. P14, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTKB000000000
VERSION     NZ_JBNTKB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48404559
            Assembly: GCF_051195155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobaculum sp. P14
  ORGANISM  Halobaculum sp. P14
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobaculum.
REFERENCE   1  (bases 1 to 2828201)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2828201)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTKB000000000.1.
            The Halobaculum sp. P14 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTKB000000000.  This version of the project
            (01) has the accession number NZ_JBNTKB010000000, and consists of
            sequences JBNTKB010000001-JBNTKB010000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195155.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:42:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,910
            CDSs (total)                      :: 2,859
            Genes (coding)                    :: 2,834
            CDSs (with protein)               :: 2,834
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 4 of 25
            Pseudo Genes (incomplete)         :: 21 of 25
            Pseudo Genes (internal stop)      :: 3 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2828201
                     /organism="Halobaculum sp. P14"
                     /mol_type="genomic DNA"
                     /strain="P14"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421638"
                     /geo_loc_name="Nigeria: Port Harcourt"
                     /collection_date="2022-11"
WGS         JBNTKB010000001-JBNTKB010000011
WGS_SCAFLD  NZ_JBNTKB010000001-NZ_JBNTKB010000011
//
LOCUS       NZ_JBLZNK010000000   5067284 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Haladaptatus sp. DFWS20, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLZNK000000000
VERSION     NZ_JBLZNK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47216014
            Assembly: GCF_051194195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. DFWS20
  ORGANISM  Haladaptatus sp. DFWS20
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 5067284)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5067284)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLZNK000000000.1.
            The Haladaptatus sp. DFWS20 whole genome shotgun (WGS) project has
            the project accession NZ_JBLZNK000000000.  This version of the
            project (01) has the accession number NZ_JBLZNK010000000, and
            consists of sequences JBLZNK010000001-JBLZNK010000021.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 230.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051194195.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:41:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,384
            CDSs (total)                      :: 5,320
            Genes (coding)                    :: 5,164
            CDSs (with protein)               :: 5,164
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 6, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 6, 3 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 58 of 156
            Pseudo Genes (incomplete)         :: 94 of 156
            Pseudo Genes (internal stop)      :: 38 of 156
            Pseudo Genes (multiple problems)  :: 33 of 156
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5067284
                     /organism="Haladaptatus sp. DFWS20"
                     /mol_type="genomic DNA"
                     /strain="DFWS20"
                     /isolation_source="Jiangsu salt lake sediment"
                     /db_xref="taxon:3403467"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2021-04"
WGS         JBLZNK010000001-JBLZNK010000021
WGS_SCAFLD  NZ_JBLZNK010000001-NZ_JBLZNK010000021
//
LOCUS       NZ_JBLZNJ010000000   2468895 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halorubrum sp. SY-15, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLZNJ000000000
VERSION     NZ_JBLZNJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47119155
            Assembly: GCF_051194155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. SY-15
  ORGANISM  Halorubrum sp. SY-15
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 2468895)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2468895)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLZNJ000000000.1.
            The Halorubrum sp. SY-15 whole genome shotgun (WGS) project has the
            project accession NZ_JBLZNJ000000000.  This version of the project
            (01) has the accession number NZ_JBLZNJ010000000, and consists of
            sequences JBLZNJ010000001-JBLZNJ010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051194155.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:29:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,492
            CDSs (total)                      :: 2,436
            Genes (coding)                    :: 2,405
            CDSs (with protein)               :: 2,405
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 8 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 3 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468895
                     /organism="Halorubrum sp. SY-15"
                     /mol_type="genomic DNA"
                     /strain="SY-15"
                     /isolation_source="salt field soil sample"
                     /db_xref="taxon:3402277"
                     /geo_loc_name="China"
                     /collection_date="2012-10"
WGS         JBLZNJ010000001-JBLZNJ010000014
WGS_SCAFLD  NZ_JBLZNJ010000001-NZ_JBLZNJ010000014
//
LOCUS       NZ_JBNTJT010000000   5015934 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halorussus sp. AFM4, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTJT000000000
VERSION     NZ_JBNTJT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48401878
            Assembly: GCF_051194995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorussus sp. AFM4
  ORGANISM  Halorussus sp. AFM4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
REFERENCE   1  (bases 1 to 5015934)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5015934)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTJT000000000.1.
            The Halorussus sp. AFM4 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTJT000000000.  This version of the project
            (01) has the accession number NZ_JBNTJT010000000, and consists of
            sequences JBNTJT010000001-JBNTJT010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051194995.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:50:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,016
            CDSs (total)                      :: 4,965
            Genes (coding)                    :: 4,907
            CDSs (with protein)               :: 4,907
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 22 of 58
            Pseudo Genes (incomplete)         :: 41 of 58
            Pseudo Genes (internal stop)      :: 9 of 58
            Pseudo Genes (multiple problems)  :: 13 of 58
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5015934
                     /organism="Halorussus sp. AFM4"
                     /mol_type="genomic DNA"
                     /strain="AFM4"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421651"
                     /geo_loc_name="Ethiopia: Oromia"
                     /collection_date="2022-11"
WGS         JBNTJT010000001-JBNTJT010000009
WGS_SCAFLD  NZ_JBNTJT010000001-NZ_JBNTJT010000009
//
LOCUS       NZ_JBNTJW010000000   3412046 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Halobellus sp. EA9, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTJW000000000
VERSION     NZ_JBNTJW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48402896
            Assembly: GCF_051195055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus sp. EA9
  ORGANISM  Halobellus sp. EA9
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3412046)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3412046)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTJW000000000.1.
            The Halobellus sp. EA9 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTJW000000000.  This version of the project
            (01) has the accession number NZ_JBNTJW010000000, and consists of
            sequences JBNTJW010000001-JBNTJW010000050.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195055.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:49:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,518
            CDSs (total)                      :: 3,455
            Genes (coding)                    :: 3,345
            CDSs (with protein)               :: 3,345
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 31 of 110
            Pseudo Genes (incomplete)         :: 77 of 110
            Pseudo Genes (internal stop)      :: 24 of 110
            Pseudo Genes (multiple problems)  :: 21 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3412046
                     /organism="Halobellus sp. EA9"
                     /mol_type="genomic DNA"
                     /strain="EA9"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421647"
                     /geo_loc_name="Ethiopia: Oromia"
                     /collection_date="2022-11"
WGS         JBNTJW010000001-JBNTJW010000050
WGS_SCAFLD  NZ_JBNTJW010000001-NZ_JBNTJW010000050
//
LOCUS       NZ_JBNTJV010000000   3337156 bp    DNA     linear   BCT 04-JUL-2025
DEFINITION  Natronomonas sp. EA1, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNTJV000000000
VERSION     NZ_JBNTJV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN48402475
            Assembly: GCF_051195035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronomonas sp. EA1
  ORGANISM  Natronomonas sp. EA1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 3337156)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3337156)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNTJV000000000.1.
            The Natronomonas sp. EA1 whole genome shotgun (WGS) project has the
            project accession NZ_JBNTJV000000000.  This version of the project
            (01) has the accession number NZ_JBNTJV010000000, and consists of
            sequences JBNTJV010000001-JBNTJV010000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051195035.1-RS_2025_07_03
            Annotation Date                   :: 07/03/2025 13:48:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,568
            CDSs (total)                      :: 3,516
            Genes (coding)                    :: 3,471
            CDSs (with protein)               :: 3,471
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 12 of 45
            Pseudo Genes (incomplete)         :: 29 of 45
            Pseudo Genes (internal stop)      :: 12 of 45
            Pseudo Genes (multiple problems)  :: 7 of 45
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3337156
                     /organism="Natronomonas sp. EA1"
                     /mol_type="genomic DNA"
                     /strain="EA1"
                     /isolation_source="Edible salt"
                     /db_xref="taxon:3421655"
                     /geo_loc_name="Ethiopia: Oromia"
                     /collection_date="2022-11"
WGS         JBNTJV010000001-JBNTJV010000011
WGS_SCAFLD  NZ_JBNTJV010000001-NZ_JBNTJV010000011
//
LOCUS       NZ_JBPKGE010000000   4454101 bp    DNA     linear   BCT 05-JUL-2025
DEFINITION  Haloarchaeobius sp. TZWSO28, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPKGE000000000
VERSION     NZ_JBPKGE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49670468
            Assembly: GCF_051207995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius sp. TZWSO28
  ORGANISM  Haloarchaeobius sp. TZWSO28
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4454101)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4454101)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUN-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPKGE000000000.1.
            The Haloarchaeobius sp. TZWSO28 whole genome shotgun (WGS) project
            has the project accession NZ_JBPKGE000000000.  This version of the
            project (01) has the accession number NZ_JBPKGE010000000, and
            consists of sequences JBPKGE010000001-JBPKGE010000008.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051207995.1-RS_2025_07_04
            Annotation Date                   :: 07/04/2025 12:40:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,427
            CDSs (total)                      :: 4,366
            Genes (coding)                    :: 4,342
            CDSs (with protein)               :: 4,342
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 4 of 24
            Pseudo Genes (incomplete)         :: 22 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            Pseudo Genes (multiple problems)  :: 3 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4454101
                     /organism="Haloarchaeobius sp. TZWSO28"
                     /mol_type="genomic DNA"
                     /strain="TZWSO28"
                     /isolation_source="Salt soil"
                     /db_xref="taxon:3446119"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2021-06"
WGS         JBPKGE010000001-JBPKGE010000008
WGS_SCAFLD  NZ_JBPKGE010000001-NZ_JBPKGE010000008
//
LOCUS       NZ_JBPKGF010000000   3170032 bp    DNA     linear   BCT 05-JUL-2025
DEFINITION  Haloarchaeobius sp. TZWWS8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPKGF000000000
VERSION     NZ_JBPKGF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49671105
            Assembly: GCF_051208015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius sp. TZWWS8
  ORGANISM  Haloarchaeobius sp. TZWWS8
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 3170032)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3170032)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUN-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPKGF000000000.1.
            The Haloarchaeobius sp. TZWWS8 whole genome shotgun (WGS) project
            has the project accession NZ_JBPKGF000000000.  This version of the
            project (01) has the accession number NZ_JBPKGF010000000, and
            consists of sequences JBPKGF010000001-JBPKGF010000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 330.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051208015.1-RS_2025_07_04
            Annotation Date                   :: 07/04/2025 12:39:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,227
            CDSs (total)                      :: 3,166
            Genes (coding)                    :: 3,156
            CDSs (with protein)               :: 3,156
            Genes (RNA)                       :: 61
            rRNAs                             :: 4, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 10 of 10
            Pseudo Genes (internal stop)      :: 1 of 10
            Pseudo Genes (multiple problems)  :: 1 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170032
                     /organism="Haloarchaeobius sp. TZWWS8"
                     /mol_type="genomic DNA"
                     /strain="TZWWS8"
                     /isolation_source="Salt soil"
                     /db_xref="taxon:3446121"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2021-06"
WGS         JBPKGF010000001-JBPKGF010000010
WGS_SCAFLD  NZ_JBPKGF010000001-NZ_JBPKGF010000010
//
LOCUS       NZ_JBPKGD010000000   4091078 bp    DNA     linear   BCT 05-JUL-2025
DEFINITION  Haloarchaeobius sp. HRN-SO-5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPKGD000000000
VERSION     NZ_JBPKGD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49669678
            Assembly: GCF_051207415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius sp. HRN-SO-5
  ORGANISM  Haloarchaeobius sp. HRN-SO-5
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4091078)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4091078)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUN-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPKGD000000000.1.
            The Haloarchaeobius sp. HRN-SO-5 whole genome shotgun (WGS) project
            has the project accession NZ_JBPKGD000000000.  This version of the
            project (01) has the accession number NZ_JBPKGD010000000, and
            consists of sequences JBPKGD010000001-JBPKGD010000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 330.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051207415.1-RS_2025_07_04
            Annotation Date                   :: 07/04/2025 12:36:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,181
            CDSs (total)                      :: 4,112
            Genes (coding)                    :: 4,050
            CDSs (with protein)               :: 4,050
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 12 of 62
            Pseudo Genes (incomplete)         :: 53 of 62
            Pseudo Genes (internal stop)      :: 5 of 62
            Pseudo Genes (multiple problems)  :: 8 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4091078
                     /organism="Haloarchaeobius sp. HRN-SO-5"
                     /mol_type="genomic DNA"
                     /strain="HRN-SO-5"
                     /isolation_source="Salt soil"
                     /db_xref="taxon:3446118"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2021-07"
WGS         JBPKGD010000001-JBPKGD010000018
WGS_SCAFLD  NZ_JBPKGD010000001-NZ_JBPKGD010000018
//
LOCUS       NZ_JBPJZC010000000   4372088 bp    DNA     linear   BCT 05-JUL-2025
DEFINITION  Haloarchaeobius sp. DFWS5, whole genome shotgun sequencing project.
ACCESSION   NZ_JBPJZC000000000
VERSION     NZ_JBPJZC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49667194
            Assembly: GCF_051207395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius sp. DFWS5
  ORGANISM  Haloarchaeobius sp. DFWS5
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4372088)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4372088)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUN-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPJZC000000000.1.
            The Haloarchaeobius sp. DFWS5 whole genome shotgun (WGS) project
            has the project accession NZ_JBPJZC000000000.  This version of the
            project (01) has the accession number NZ_JBPJZC010000000, and
            consists of sequences JBPJZC010000001-JBPJZC010000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 330.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051207395.1-RS_2025_07_04
            Annotation Date                   :: 07/04/2025 12:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,421
            CDSs (total)                      :: 4,355
            Genes (coding)                    :: 4,323
            CDSs (with protein)               :: 4,323
            Genes (RNA)                       :: 66
            rRNAs                             :: 3, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 4, 3 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 6 of 32
            Pseudo Genes (incomplete)         :: 28 of 32
            Pseudo Genes (internal stop)      :: 5 of 32
            Pseudo Genes (multiple problems)  :: 7 of 32
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4372088
                     /organism="Haloarchaeobius sp. DFWS5"
                     /mol_type="genomic DNA"
                     /strain="DFWS5"
                     /isolation_source="Tidal flat"
                     /db_xref="taxon:3446114"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2021-04"
WGS         JBPJZC010000001-JBPJZC010000012
WGS_SCAFLD  NZ_JBPJZC010000001-NZ_JBPJZC010000012
//
LOCUS       NZ_JBPJZD010000000   4353942 bp    DNA     linear   BCT 05-JUL-2025
DEFINITION  Haloarchaeobius sp. DYHT-AS-18, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPJZD000000000
VERSION     NZ_JBPJZD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49667251
            Assembly: GCF_051207375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius sp. DYHT-AS-18
  ORGANISM  Haloarchaeobius sp. DYHT-AS-18
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4353942)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4353942)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUN-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPJZD000000000.1.
            The Haloarchaeobius sp. DYHT-AS-18 whole genome shotgun (WGS)
            project has the project accession NZ_JBPJZD000000000.  This version
            of the project (01) has the accession number NZ_JBPJZD010000000,
            and consists of sequences JBPJZD010000001-JBPJZD010000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051207375.1-RS_2025_07_04
            Annotation Date                   :: 07/04/2025 12:37:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,364
            CDSs (total)                      :: 4,301
            Genes (coding)                    :: 4,271
            CDSs (with protein)               :: 4,271
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 2 of 30
            Pseudo Genes (incomplete)         :: 28 of 30
            Pseudo Genes (internal stop)      :: 2 of 30
            Pseudo Genes (multiple problems)  :: 2 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4353942
                     /organism="Haloarchaeobius sp. DYHT-AS-18"
                     /mol_type="genomic DNA"
                     /strain="DYHT-AS-18"
                     /isolation_source="Tidal flat"
                     /db_xref="taxon:3446117"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2021-07"
WGS         JBPJZD010000001-JBPJZD010000010
WGS_SCAFLD  NZ_JBPJZD010000001-NZ_JBPJZD010000010
//
LOCUS       NZ_JAMXLV010000000   1890295 bp    DNA     linear   BCT 06-JUL-2025
DEFINITION  Thermococcus alcaliphilus strain AEDII12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMXLV000000000
VERSION     NZ_JAMXLV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29153076
            Assembly: GCF_024054535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermococcus alcaliphilus
  ORGANISM  Thermococcus alcaliphilus
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Thermococcus.
REFERENCE   1  (bases 1 to 1890295)
  AUTHORS   Park,Y.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2022) Marine Biotechnology, Korea Institute of
            Ocean Science and Technology, 385, Haeyang-Ro, Yeongdo-Gu, Busan
            49111, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMXLV000000000.1.
            The Thermococcus alcaliphilus whole genome shotgun (WGS) project
            has the project accession NZ_JAMXLV000000000.  This version of the
            project (01) has the accession number NZ_JAMXLV010000000, and
            consists of sequences JAMXLV010000001-JAMXLV010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.0x
            Sequencing Technology  :: Illumina iSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024054535.1-RS_2025_07_06
            Annotation Date                   :: 07/06/2025 11:24:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,127
            CDSs (total)                      :: 2,075
            Genes (coding)                    :: 2,042
            CDSs (with protein)               :: 2,042
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 6 of 33
            Pseudo Genes (incomplete)         :: 26 of 33
            Pseudo Genes (internal stop)      :: 2 of 33
            Pseudo Genes (multiple problems)  :: 1 of 33
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890295
                     /organism="Thermococcus alcaliphilus"
                     /mol_type="genomic DNA"
                     /strain="AEDII12"
                     /isolation_source="Water"
                     /type_material="type strain of Thermococcus alcaliphilus"
                     /db_xref="taxon:139207"
                     /geo_loc_name="Italy"
                     /lat_lon="38.21 N 14.59 E"
                     /collection_date="1995-11-06"
WGS         JAMXLV010000001-JAMXLV010000025
WGS_SCAFLD  NZ_JAMXLV010000001-NZ_JAMXLV010000025
//
LOCUS       NZ_JBPJSJ010000000   3833548 bp    DNA     linear   BCT 09-JUL-2025
DEFINITION  Natrinema sp. CGMCC1.2065, whole genome shotgun sequencing project.
ACCESSION   NZ_JBPJSJ000000000
VERSION     NZ_JBPJSJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49650278
            Assembly: GCF_051225675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrinema sp. CGMCC1.2065
  ORGANISM  Natrinema sp. CGMCC1.2065
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrinema.
REFERENCE   1  (bases 1 to 3833548)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3833548)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUN-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPJSJ000000000.1.
            The Natrinema sp. CGMCC1.2065 whole genome shotgun (WGS) project
            has the project accession NZ_JBPJSJ000000000.  This version of the
            project (01) has the accession number NZ_JBPJSJ010000000, and
            consists of sequences JBPJSJ010000001-JBPJSJ010000048.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 499.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051225675.1-RS_2025_07_08
            Annotation Date                   :: 07/08/2025 10:17:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,925
            CDSs (total)                      :: 3,864
            Genes (coding)                    :: 3,792
            CDSs (with protein)               :: 3,792
            Genes (RNA)                       :: 61
            rRNAs                             :: 4, 2, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2, 6 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 23 of 72
            Pseudo Genes (incomplete)         :: 51 of 72
            Pseudo Genes (internal stop)      :: 3 of 72
            Pseudo Genes (multiple problems)  :: 5 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3833548
                     /organism="Natrinema sp. CGMCC1.2065"
                     /mol_type="genomic DNA"
                     /strain="CGMCC1.2065"
                     /isolation_source="salt pond"
                     /culture_collection="CGMCC:1.2065"
                     /db_xref="taxon:3445767"
                     /geo_loc_name="China"
                     /collection_date="1983"
WGS         JBPJSJ010000001-JBPJSJ010000048
WGS_SCAFLD  NZ_JBPJSJ010000001-NZ_JBPJSJ010000048
//
LOCUS       NZ_JBEVAJ010000000   2059891 bp    DNA     linear   ENV 15-JUL-2025
DEFINITION  MAG: Pyrobaculum sp. isolate TW003P, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEVAJ000000000
VERSION     NZ_JBEVAJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40182034
            Assembly: GCF_051297095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pyrobaculum sp. (hot springs metagenome)
  ORGANISM  Pyrobaculum sp.
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2059891)
  AUTHORS   Dzhuraeva,M.
  TITLE     Metagenomic assembly and genome sequence reconstruction of a novel
            thermophilic Desulfurococaceae member from a high-altitude
            geothermal spring in Tajikistan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2059891)
  AUTHORS   Dzhuraeva,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Department of Biological Sciences,
            University of Bergen, Thormoehlensgt. 53 A/B, Bergen 5007, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEVAJ000000000.1.
            The Pyrobaculum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBEVAJ000000000.  This version of the project
            (01) has the accession number NZ_JBEVAJ010000000, and consists of
            sequences JBEVAJ010000001-JBEVAJ010000195.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Pyrobaculum aerophilum.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-MAY-2022
            Assembly Method        :: CLC Genomic Workbench v. 22
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2.5x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051297095.1-RS_2025_07_15
            Annotation Date                   :: 07/15/2025 04:01:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,565
            CDSs (total)                      :: 2,518
            Genes (coding)                    :: 2,396
            CDSs (with protein)               :: 2,396
            Genes (RNA)                       :: 47
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 29 of 122
            Pseudo Genes (incomplete)         :: 87 of 122
            Pseudo Genes (internal stop)      :: 14 of 122
            Pseudo Genes (multiple problems)  :: 7 of 122
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059891
                     /organism="Pyrobaculum sp."
                     /mol_type="genomic DNA"
                     /isolate="TW003P"
                     /isolation_source="hot spring"
                     /db_xref="taxon:2004705"
                     /environmental_sample
                     /geo_loc_name="Tajikistan: Tamdykul hot spring"
                     /lat_lon="39.42305 N 71.22188 E"
                     /collection_date="2014-05-17"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JBEVAJ010000001-JBEVAJ010000195
WGS_SCAFLD  NZ_JBEVAJ010000001-NZ_JBEVAJ010000195
//
LOCUS       NZ_JALJYG010000000   2087147 bp    DNA     linear   BCT 16-JUL-2025
DEFINITION  Methanocalculus alkaliphilus strain AMF2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALJYG000000000
VERSION     NZ_JALJYG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18243343
            Assembly: GCF_024170505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocalculus alkaliphilus
  ORGANISM  Methanocalculus alkaliphilus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 2087147)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the
            genomes of soil and plant-associated and newly described type
            strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2087147)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALJYG000000000.1.
            The Methanocalculus alkaliphilus whole genome shotgun (WGS) project
            has the project accession NZ_JALJYG000000000.  This version of the
            project (01) has the accession number NZ_JALJYG010000000, and
            consists of sequences JALJYG010000001-JALJYG010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 718.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024170505.1-RS_2025_07_15
            Annotation Date                   :: 07/15/2025 19:55:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,231
            CDSs (total)                      :: 2,177
            Genes (coding)                    :: 2,158
            CDSs (with protein)               :: 2,158
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 3, 2 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 2 of 19
            Pseudo Genes (incomplete)         :: 18 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087147
                     /organism="Methanocalculus alkaliphilus"
                     /mol_type="genomic DNA"
                     /strain="AMF2"
                     /type_material="type strain of Methanocalculus
                     alkaliphilus"
                     /db_xref="taxon:768730"
WGS         JALJYG010000001-JALJYG010000037
WGS_SCAFLD  NZ_JALJYG010000001-NZ_JALJYG010000037
//
LOCUS       NZ_JBLKOA010000000   3193723 bp    DNA     linear   BCT 20-JUL-2025
DEFINITION  Halovenus halobia strain ZY30, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLKOA000000000
VERSION     NZ_JBLKOA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46474249
            Assembly: GCF_051414135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus halobia
  ORGANISM  Halovenus halobia
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3193723)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3193723)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLKOA000000000.1.
            The Halovenus halobia whole genome shotgun (WGS) project has the
            project accession NZ_JBLKOA000000000.  This version of the project
            (01) has the accession number NZ_JBLKOA010000000, and consists of
            sequences JBLKOA010000001-JBLKOA010000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 323.17x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051414135.1-RS_2025_07_19
            Annotation Date                   :: 07/19/2025 13:17:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,326
            CDSs (total)                      :: 3,270
            Genes (coding)                    :: 3,231
            CDSs (with protein)               :: 3,231
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 11 of 39
            Pseudo Genes (incomplete)         :: 30 of 39
            Pseudo Genes (internal stop)      :: 4 of 39
            Pseudo Genes (multiple problems)  :: 5 of 39
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193723
                     /organism="Halovenus halobia"
                     /mol_type="genomic DNA"
                     /strain="ZY30"
                     /isolation_source="salt"
                     /db_xref="taxon:3396622"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2018-03"
WGS         JBLKOA010000001-JBLKOA010000018
WGS_SCAFLD  NZ_JBLKOA010000001-NZ_JBLKOA010000018
//
LOCUS       NZ_JBLKNY010000000   4244243 bp    DNA     linear   BCT 20-JUL-2025
DEFINITION  Halosimplex marinum strain XH63, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLKNY000000000
VERSION     NZ_JBLKNY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46473983
            Assembly: GCF_051414075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosimplex marinum
  ORGANISM  Halosimplex marinum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halosimplex.
REFERENCE   1  (bases 1 to 4244243)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4244243)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLKNY000000000.1.
            The Halosimplex marinum whole genome shotgun (WGS) project has the
            project accession NZ_JBLKNY000000000.  This version of the project
            (01) has the accession number NZ_JBLKNY010000000, and consists of
            sequences JBLKNY010000001-JBLKNY010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 219.63x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051414075.1-RS_2025_07_19
            Annotation Date                   :: 07/19/2025 13:21:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,241
            CDSs (total)                      :: 4,180
            Genes (coding)                    :: 4,146
            CDSs (with protein)               :: 4,146
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 7 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 9 of 34
            Pseudo Genes (incomplete)         :: 26 of 34
            Pseudo Genes (internal stop)      :: 4 of 34
            Pseudo Genes (multiple problems)  :: 5 of 34
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4244243
                     /organism="Halosimplex marinum"
                     /mol_type="genomic DNA"
                     /strain="XH63"
                     /isolation_source="salt"
                     /type_material="type strain of Halosimplex marinum"
                     /db_xref="taxon:3396620"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2018-03"
WGS         JBLKNY010000001-JBLKNY010000014
WGS_SCAFLD  NZ_JBLKNY010000001-NZ_JBLKNY010000014
//
LOCUS       NZ_JBLKNW010000000   5455721 bp    DNA     linear   BCT 20-JUL-2025
DEFINITION  Halosimplex amylolyticum strain DYHT-AS-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBLKNW000000000
VERSION     NZ_JBLKNW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46473778
            Assembly: GCF_051414035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosimplex amylolyticum
  ORGANISM  Halosimplex amylolyticum
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halosimplex.
REFERENCE   1  (bases 1 to 5455721)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5455721)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLKNW000000000.1.
            The Halosimplex amylolyticum whole genome shotgun (WGS) project has
            the project accession NZ_JBLKNW000000000.  This version of the
            project (01) has the accession number NZ_JBLKNW010000000, and
            consists of sequences JBLKNW010000001-JBLKNW010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 187.19x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051414035.1-RS_2025_07_19
            Annotation Date                   :: 07/19/2025 13:25:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,209
            CDSs (total)                      :: 5,150
            Genes (coding)                    :: 5,065
            CDSs (with protein)               :: 5,065
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 6, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 23S)
            partial rRNAs                     :: 6 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 25 of 85
            Pseudo Genes (incomplete)         :: 63 of 85
            Pseudo Genes (internal stop)      :: 16 of 85
            Pseudo Genes (multiple problems)  :: 15 of 85
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5455721
                     /organism="Halosimplex amylolyticum"
                     /mol_type="genomic DNA"
                     /strain="DYHT-AS-1"
                     /isolation_source="sediment"
                     /type_material="type strain of Halosimplex amylolyticum"
                     /db_xref="taxon:3396616"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2021-07"
WGS         JBLKNW010000001-JBLKNW010000025
WGS_SCAFLD  NZ_JBLKNW010000001-NZ_JBLKNW010000025
//
LOCUS       NZ_JBLKNX010000000   4851996 bp    DNA     linear   BCT 20-JUL-2025
DEFINITION  Halosimplex halobium strain GDY60, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLKNX000000000
VERSION     NZ_JBLKNX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46473856
            Assembly: GCF_051414055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosimplex halobium
  ORGANISM  Halosimplex halobium
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halosimplex.
REFERENCE   1  (bases 1 to 4851996)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from food-grade salt
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4851996)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLKNX000000000.1.
            The Halosimplex halobium whole genome shotgun (WGS) project has the
            project accession NZ_JBLKNX000000000.  This version of the project
            (01) has the accession number NZ_JBLKNX010000000, and consists of
            sequences JBLKNX010000001-JBLKNX010000056.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 223.91x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051414055.1-RS_2025_07_19
            Annotation Date                   :: 07/19/2025 13:20:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,850
            CDSs (total)                      :: 4,788
            Genes (coding)                    :: 4,709
            CDSs (with protein)               :: 4,709
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 2, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 8 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 17 of 79
            Pseudo Genes (incomplete)         :: 67 of 79
            Pseudo Genes (internal stop)      :: 9 of 79
            Pseudo Genes (multiple problems)  :: 11 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4851996
                     /organism="Halosimplex halobium"
                     /mol_type="genomic DNA"
                     /strain="GDY60"
                     /isolation_source="salt"
                     /type_material="type strain of Halosimplex halobium"
                     /db_xref="taxon:3396618"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2018-03"
WGS         JBLKNX010000001-JBLKNX010000056
WGS_SCAFLD  NZ_JBLKNX010000001-NZ_JBLKNX010000056
//
LOCUS       NZ_JBLKOB010000000   3761405 bp    DNA     linear   BCT 20-JUL-2025
DEFINITION  Halovenus amylolytica strain SHR40, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLKOB000000000
VERSION     NZ_JBLKOB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46474258
            Assembly: GCF_051414095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus amylolytica
  ORGANISM  Halovenus amylolytica
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3761405)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3761405)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLKOB000000000.1.
            The Halovenus amylolytica whole genome shotgun (WGS) project has
            the project accession NZ_JBLKOB000000000.  This version of the
            project (01) has the accession number NZ_JBLKOB010000000, and
            consists of sequences JBLKOB010000001-JBLKOB010000051.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 283.96x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051414095.1-RS_2025_07_19
            Annotation Date                   :: 07/19/2025 13:16:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,751
            CDSs (total)                      :: 3,675
            Genes (coding)                    :: 3,596
            CDSs (with protein)               :: 3,596
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 27 of 79
            Pseudo Genes (incomplete)         :: 59 of 79
            Pseudo Genes (internal stop)      :: 12 of 79
            Pseudo Genes (multiple problems)  :: 15 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761405
                     /organism="Halovenus amylolytica"
                     /mol_type="genomic DNA"
                     /strain="SHR40"
                     /isolation_source="sediment"
                     /type_material="type strain of Halovenus amylolytica"
                     /db_xref="taxon:2500550"
                     /geo_loc_name="China: Xinjiang"
                     /collection_date="2013-04"
WGS         JBLKOB010000001-JBLKOB010000051
WGS_SCAFLD  NZ_JBLKOB010000001-NZ_JBLKOB010000051
//
LOCUS       NZ_JBLKNZ010000000   3160364 bp    DNA     linear   BCT 20-JUL-2025
DEFINITION  Halovenus marina strain SYNS179, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBLKNZ000000000
VERSION     NZ_JBLKNZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46474241
            Assembly: GCF_051414115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus marina
  ORGANISM  Halovenus marina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3160364)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3160364)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLKNZ000000000.1.
            The Halovenus marina whole genome shotgun (WGS) project has the
            project accession NZ_JBLKNZ000000000.  This version of the project
            (01) has the accession number NZ_JBLKNZ010000000, and consists of
            sequences JBLKNZ010000001-JBLKNZ010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 309.09x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051414115.1-RS_2025_07_19
            Annotation Date                   :: 07/19/2025 13:21:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,181
            CDSs (total)                      :: 3,131
            Genes (coding)                    :: 3,103
            CDSs (with protein)               :: 3,103
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 15 of 28
            Pseudo Genes (incomplete)         :: 15 of 28
            Pseudo Genes (internal stop)      :: 9 of 28
            Pseudo Genes (multiple problems)  :: 8 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160364
                     /organism="Halovenus marina"
                     /mol_type="genomic DNA"
                     /strain="SYNS179"
                     /isolation_source="soil"
                     /db_xref="taxon:3396621"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2018-07"
WGS         JBLKNZ010000001-JBLKNZ010000002
WGS_SCAFLD  NZ_JBLKNZ010000001-NZ_JBLKNZ010000002
//
LOCUS       NZ_JAHQXF010000000   3904802 bp    DNA     linear   BCT 21-JUL-2025
DEFINITION  Haloarcula limicola strain JCM 183640, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAHQXF000000000
VERSION     NZ_JAHQXF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19844820
            Assembly: GCF_019061235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula limicola
  ORGANISM  Haloarcula limicola
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3904802)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C.S. and Ventosa,A.
  TITLE     New haloarchaea isolates fom saline soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3904802)
  AUTHORS   Duran-Viseras,A., Sanchez-Porro,C.S. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2021) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHQXF000000000.1.
            The Haloarcula limicola whole genome shotgun (WGS) project has the
            project accession NZ_JAHQXF000000000.  This version of the project
            (01) has the accession number NZ_JAHQXF010000000, and consists of
            sequences JAHQXF010000001-JAHQXF010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 462.827x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019061235.1-RS_2025_07_21
            Annotation Date                   :: 07/21/2025 10:17:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,976
            CDSs (total)                      :: 3,925
            Genes (coding)                    :: 3,896
            CDSs (with protein)               :: 3,896
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 7 of 29
            Pseudo Genes (incomplete)         :: 26 of 29
            Pseudo Genes (internal stop)      :: 4 of 29
            Pseudo Genes (multiple problems)  :: 5 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3904802
                     /organism="Haloarcula limicola"
                     /mol_type="genomic DNA"
                     /strain="JCM 183640"
                     /isolation_source="saline soil"
                     /culture_collection="JCM:183640"
                     /db_xref="taxon:1429915"
                     /geo_loc_name="Japan"
                     /collection_date="2019"
WGS         JAHQXF010000001-JAHQXF010000005
WGS_SCAFLD  NZ_JAHQXF010000001-NZ_JAHQXF010000005
//
LOCUS       NZ_CATZNA010000000   1585935 bp    DNA     linear   ENV 21-JUL-2025
DEFINITION  MAG: Methanosphaera stadtmanae isolate
            ERR9578286_bin.22_MetaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CATZNA000000000
VERSION     NZ_CATZNA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114063437
            Sequence Read Archive: ERR9578286
            Assembly: GCF_958421955.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosphaera stadtmanae (human feces metagenome)
  ORGANISM  Methanosphaera stadtmanae
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1585935)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2023) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CATZNA000000000.1.
            The Methanosphaera stadtmanae whole genome shotgun (WGS) project
            has the project accession NZ_CATZNA000000000.  This version of the
            project (01) has the accession number NZ_CATZNA010000000, and
            consists of sequences CATZNA010000001-CATZNA010000150.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set ERP132305.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run ERR9578286.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_958421955.1-RS_2025_07_21
            Annotation Date                   :: 07/21/2025 10:54:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,584
            CDSs (total)                      :: 1,552
            Genes (coding)                    :: 1,519
            CDSs (with protein)               :: 1,519
            Genes (RNA)                       :: 32
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 2 of 33
            Pseudo Genes (incomplete)         :: 30 of 33
            Pseudo Genes (internal stop)      :: 1 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585935
                     /organism="Methanosphaera stadtmanae"
                     /mol_type="genomic DNA"
                     /isolate="ERR9578286_bin.22_MetaWRAP_v1.3_MAG"
                     /isolation_source="human feces metagenome"
                     /db_xref="taxon:2317"
                     /environmental_sample
                     /metagenome_source="human feces metagenome"
                     /metagenomic
WGS         CATZNA010000001-CATZNA010000150
WGS_SCAFLD  NZ_CATZNA010000001-NZ_CATZNA010000150
//
LOCUS       NZ_VCYI01000000      2611534 bp    DNA     linear   BCT 22-JUL-2025
DEFINITION  Methanoculleus methanifontis strain FWC-SCC3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VCYI00000000
VERSION     NZ_VCYI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11878460
            Assembly: GCF_030464365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus methanifontis
  ORGANISM  Methanoculleus methanifontis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2611534)
  AUTHORS   You,Y.-T., Chen,S.-C., Zhang,W.-L. and Lai,M.-C.
  TITLE     Isolation and characterization of methanogens from the cold seep
            sediment at Four-Way Closure Ridge
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2611534)
  AUTHORS   You,Y.-T., Chen,S.-C., Zhang,W.-L. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2019) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VCYI00000000.1.
            The Methanoculleus methanifontis whole genome shotgun (WGS) project
            has the project accession NZ_VCYI00000000.  This version of the
            project (01) has the accession number NZ_VCYI01000000, and consists
            of sequences VCYI01000001-VCYI01000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Department of Life Sciences,
            National Chung Hsing University, Taichung, Taiwan; PI: Mei-Chin
            Lai.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 08-JAN-2019
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 385.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030464365.1-RS_2025_07_22
            Annotation Date                   :: 07/22/2025 11:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,673
            CDSs (total)                      :: 2,619
            Genes (coding)                    :: 2,594
            CDSs (with protein)               :: 2,594
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 6 of 25
            Pseudo Genes (incomplete)         :: 17 of 25
            Pseudo Genes (internal stop)      :: 6 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611534
                     /organism="Methanoculleus methanifontis"
                     /mol_type="genomic DNA"
                     /strain="FWC-SCC3"
                     /isolation_source="marine sediment"
                     /type_material="type strain of Methanoculleus
                     methanifontis"
                     /db_xref="taxon:2584086"
                     /geo_loc_name="Taiwan: Four-Way Closure Ridge, offshore
                     southwest coast"
                     /lat_lon="22.05925 N 119.80118 E"
                     /collection_date="2015-11"
                     /collected_by="Sheng-Chung Chen"
                     /identified_by="Yi-Ting You, Sheng-Chung Chen, Wei-Ling
                     Zhang, Mei-Chin Lai"
WGS         VCYI01000001-VCYI01000030
WGS_SCAFLD  NZ_VCYI01000001-NZ_VCYI01000030
//
LOCUS       NZ_VCYH01000000      3165140 bp    DNA     linear   BCT 23-JUL-2025
DEFINITION  Methanoculleus frigidifontis strain FWC-SCC1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VCYH00000000
VERSION     NZ_VCYH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11877970
            Assembly: GCF_030464345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanoculleus frigidifontis
  ORGANISM  Methanoculleus frigidifontis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 3165140)
  AUTHORS   Chen,Y.-W., Chen,S.-C., Teng,N.-H. and Lai,M.-C.
  TITLE     Methanoculleus sp. FWC-SCC1, a methanogenic archaeon isolated from
            deep marine cold seep
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3165140)
  AUTHORS   Chen,Y.-W., Chen,S.-C., Teng,N.-H. and Lai,M.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2019) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VCYH00000000.1.
            The Methanoculleus frigidifontis whole genome shotgun (WGS) project
            has the project accession NZ_VCYH00000000.  This version of the
            project (01) has the accession number NZ_VCYH01000000, and consists
            of sequences VCYH01000001-VCYH01000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Department of Life Sciences,
            National Chung Hsing University, Taichung, Taiwan; PI: Prof.
            Mei-Chin Lai; BCRC: AR10056.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 24-MAY-2019
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 316.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030464345.1-RS_2025_07_23
            Annotation Date                   :: 07/23/2025 10:05:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,180
            CDSs (total)                      :: 3,128
            Genes (coding)                    :: 3,085
            CDSs (with protein)               :: 3,085
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 9 of 43
            Pseudo Genes (incomplete)         :: 38 of 43
            Pseudo Genes (internal stop)      :: 2 of 43
            Pseudo Genes (multiple problems)  :: 6 of 43
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3165140
                     /organism="Methanoculleus frigidifontis"
                     /mol_type="genomic DNA"
                     /strain="FWC-SCC1"
                     /isolation_source="marine sediment"
                     /type_material="type strain of Methanoculleus
                     frigidifontis"
                     /db_xref="taxon:2584085"
                     /geo_loc_name="Taiwan: Four-Way Closure Ridge, offshore
                     southwest coast"
                     /lat_lon="22.05742 N 119.79992 E"
                     /collection_date="2015-11"
                     /collected_by="Sheng-Chung Chen"
                     /identified_by="Yu-Wei Chen, Sheng-Chung Chen, Nai-Hsuan
                     Teng, Mei-Chin Lai"
WGS         VCYH01000001-VCYH01000030
WGS_SCAFLD  NZ_VCYH01000001-NZ_VCYH01000030
//
LOCUS       NZ_JANHJR010000000   4049318 bp    DNA     linear   BCT 29-JUL-2025
DEFINITION  Haloarchaeobius litoreus strain GX1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANHJR000000000
VERSION     NZ_JANHJR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29862086
            Assembly: GCF_024495425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius litoreus
  ORGANISM  Haloarchaeobius litoreus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4049318)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4049318)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHJR000000000.1.
            The Haloarchaeobius litoreus whole genome shotgun (WGS) project has
            the project accession NZ_JANHJR000000000.  This version of the
            project (01) has the accession number NZ_JANHJR010000000, and
            consists of sequences JANHJR010000001-JANHJR010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 137.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024495425.1-RS_2025_07_29
            Annotation Date                   :: 07/29/2025 10:12:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,121
            CDSs (total)                      :: 4,066
            Genes (coding)                    :: 4,022
            CDSs (with protein)               :: 4,022
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 3 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 10 of 44
            Pseudo Genes (incomplete)         :: 38 of 44
            Pseudo Genes (internal stop)      :: 6 of 44
            Pseudo Genes (multiple problems)  :: 8 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4049318
                     /organism="Haloarchaeobius litoreus"
                     /mol_type="genomic DNA"
                     /strain="GX1"
                     /isolation_source="Saline soil of Gangxi marine solar
                     saltern"
                     /type_material="type strain of Haloarchaeobius litoreus"
                     /db_xref="taxon:755306"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2009-03"
WGS         JANHJR010000001-JANHJR010000007
WGS_SCAFLD  NZ_JANHJR010000001-NZ_JANHJR010000007
//
LOCUS       NZ_JANHDH010000000   4608248 bp    DNA     linear   BCT 29-JUL-2025
DEFINITION  Haloarchaeobius amylolyticus strain XD48, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANHDH000000000
VERSION     NZ_JANHDH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29856471
            Assembly: GCF_026616195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius amylolyticus
  ORGANISM  Haloarchaeobius amylolyticus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4608248)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4608248)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHDH000000000.1.
            The Haloarchaeobius amylolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JANHDH000000000.  This version of the
            project (01) has the accession number NZ_JANHDH010000000, and
            consists of sequences JANHDH010000001-JANHDH010000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 120.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026616195.1-RS_2025_07_29
            Annotation Date                   :: 07/29/2025 10:18:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,618
            CDSs (total)                      :: 4,556
            Genes (coding)                    :: 4,525
            CDSs (with protein)               :: 4,525
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 52
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 9 of 31
            Pseudo Genes (incomplete)         :: 23 of 31
            Pseudo Genes (internal stop)      :: 4 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4608248
                     /organism="Haloarchaeobius amylolyticus"
                     /mol_type="genomic DNA"
                     /strain="XD48"
                     /isolation_source="Brine of Xidi marine solar saltern"
                     /type_material="type strain of Haloarchaeobius
                     amylolyticus"
                     /db_xref="taxon:1198296"
                     /geo_loc_name="China: Xiamen"
                     /collection_date="2010-06"
WGS         JANHDH010000001-JANHDH010000006
WGS_SCAFLD  NZ_JANHDH010000001-NZ_JANHDH010000006
//
LOCUS       NZ_JANHAU010000000   3851061 bp    DNA     linear   BCT 29-JUL-2025
DEFINITION  Haloarchaeobius salinus strain YC82, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANHAU000000000
VERSION     NZ_JANHAU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29881929
            Assembly: GCF_024464185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius salinus
  ORGANISM  Haloarchaeobius salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 3851061)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3851061)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANHAU000000000.1.
            The Haloarchaeobius salinus whole genome shotgun (WGS) project has
            the project accession NZ_JANHAU000000000.  This version of the
            project (01) has the accession number NZ_JANHAU010000000, and
            consists of sequences JANHAU010000001-JANHAU010000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 140.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024464185.1-RS_2025_07_29
            Annotation Date                   :: 07/29/2025 10:08:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,922
            CDSs (total)                      :: 3,855
            Genes (coding)                    :: 3,797
            CDSs (with protein)               :: 3,797
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 22 of 58
            Pseudo Genes (incomplete)         :: 47 of 58
            Pseudo Genes (internal stop)      :: 12 of 58
            Pseudo Genes (multiple problems)  :: 19 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851061
                     /organism="Haloarchaeobius salinus"
                     /mol_type="genomic DNA"
                     /strain="YC82"
                     /isolation_source="Yuncheng salt lake"
                     /type_material="type strain of Haloarchaeobius salinus"
                     /db_xref="taxon:1198298"
                     /geo_loc_name="China: Shanxi"
                     /collection_date="2010-06"
WGS         JANHAU010000001-JANHAU010000017
WGS_SCAFLD  NZ_JANHAU010000001-NZ_JANHAU010000017
//
LOCUS       NZ_JALLGW010000000   4461942 bp    DNA     linear   BCT 29-JUL-2025
DEFINITION  Halomarina salina strain ZS-57-S, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLGW000000000
VERSION     NZ_JALLGW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27594321
            Assembly: GCF_023074835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina salina
  ORGANISM  Halomarina salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 4461942)
  AUTHORS   Xu,W.M., Xu,J.Q., Zhou,Y., Li,Y., Lu,Z.Z., Hou,J., Zhu,L. and
            Cui,H.L.
  TITLE     Halomarina salina sp. nov., isolated from a marine solar saltern
  JOURNAL   Antonie Van Leeuwenhoek 109 (8), 1121-1126 (2016)
   PUBMED   27198657
REFERENCE   2  (bases 1 to 4461942)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLGW000000000.1.
            The Halomarina salina whole genome shotgun (WGS) project has the
            project accession NZ_JALLGW000000000.  This version of the project
            (01) has the accession number NZ_JALLGW010000000, and consists of
            sequences JALLGW010000001-JALLGW010000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023074835.1-RS_2025_07_29
            Annotation Date                   :: 07/29/2025 10:09:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,496
            CDSs (total)                      :: 4,445
            Genes (coding)                    :: 4,391
            CDSs (with protein)               :: 4,391
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 18 of 54
            Pseudo Genes (incomplete)         :: 37 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 12 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4461942
                     /organism="Halomarina salina"
                     /mol_type="genomic DNA"
                     /strain="ZS-57-S"
                     /isolation_source="marine solar saltern"
                     /type_material="type strain of Halomarina salina"
                     /db_xref="taxon:1872699"
                     /geo_loc_name="China: Zhejiang, Zhoushan"
                     /collection_date="2012-10"
WGS         JALLGW010000001-JALLGW010000010
WGS_SCAFLD  NZ_JALLGW010000001-NZ_JALLGW010000010
//
LOCUS       NZ_JAJCVI010000000   4065184 bp    DNA     linear   BCT 29-JUL-2025
DEFINITION  Halorubellus salinus strain GX3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAJCVI000000000
VERSION     NZ_JAJCVI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22374872
            Assembly: GCF_020567525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubellus salinus
  ORGANISM  Halorubellus salinus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Halorubellus.
REFERENCE   1  (bases 1 to 4065184)
  AUTHORS   Cui,H.-L.
  TITLE     Halophilic archaea isolated from solar salterns and salt lakes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4065184)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2021) School of Food and Biological Engineering,
            Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJCVI000000000.1.
            The Halorubellus salinus whole genome shotgun (WGS) project has the
            project accession NZ_JAJCVI000000000.  This version of the project
            (01) has the accession number NZ_JAJCVI010000000, and consists of
            sequences JAJCVI010000001-JAJCVI010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020567525.1-RS_2025_07_29
            Annotation Date                   :: 07/29/2025 09:58:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,028
            CDSs (total)                      :: 3,970
            Genes (coding)                    :: 3,941
            CDSs (with protein)               :: 3,941
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 5 (5S, 16S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 4 of 29
            Pseudo Genes (incomplete)         :: 26 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4065184
                     /organism="Halorubellus salinus"
                     /mol_type="genomic DNA"
                     /strain="GX3"
                     /isolation_source="saline soil"
                     /type_material="type strain of Halorubellus salinus"
                     /db_xref="taxon:755309"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2009-02"
WGS         JAJCVI010000001-JAJCVI010000014
WGS_SCAFLD  NZ_JAJCVI010000001-NZ_JAJCVI010000014
//
LOCUS       NZ_JAODIY010000000   3574973 bp    DNA     linear   BCT 29-JUL-2025
DEFINITION  Halovenus rubra strain R28, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAODIY000000000
VERSION     NZ_JAODIY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30884598
            Assembly: GCF_026586665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus rubra
  ORGANISM  Halovenus rubra
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3574973)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3574973)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAODIY000000000.1.
            The Halovenus rubra whole genome shotgun (WGS) project has the
            project accession NZ_JAODIY000000000.  This version of the project
            (01) has the accession number NZ_JAODIY010000000, and consists of
            sequences JAODIY010000001-JAODIY010000048.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 219.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026586665.1-RS_2025_07_29
            Annotation Date                   :: 07/29/2025 10:24:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,493
            CDSs (total)                      :: 3,433
            Genes (coding)                    :: 3,354
            CDSs (with protein)               :: 3,354
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 4, 3 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 33 of 79
            Pseudo Genes (incomplete)         :: 62 of 79
            Pseudo Genes (internal stop)      :: 16 of 79
            Pseudo Genes (multiple problems)  :: 26 of 79
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3574973
                     /organism="Halovenus rubra"
                     /mol_type="genomic DNA"
                     /strain="R28"
                     /isolation_source="the red brine of salted Laminaria"
                     /type_material="type strain of Halovenus rubra"
                     /db_xref="taxon:869890"
                     /geo_loc_name="China: Dalian"
                     /collection_date="2009-09"
WGS         JAODIY010000001-JAODIY010000048
WGS_SCAFLD  NZ_JAODIY010000001-NZ_JAODIY010000048
//
LOCUS       NZ_JARRAH010000000   3610213 bp    DNA     linear   BCT 31-JUL-2025
DEFINITION  Halomarina ordinaria strain PSRA2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JARRAH000000000
VERSION     NZ_JARRAH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33708900
            Assembly: GCF_030553305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina ordinaria
  ORGANISM  Halomarina ordinaria
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 3610213)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3610213)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRAH000000000.1.
            The Halomarina ordinaria whole genome shotgun (WGS) project has the
            project accession NZ_JARRAH000000000.  This version of the project
            (01) has the accession number NZ_JARRAH010000000, and consists of
            sequences JARRAH010000001-JARRAH010000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 390.0x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030553305.1-RS_2025_07_31
            Annotation Date                   :: 07/31/2025 11:51:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,766
            CDSs (total)                      :: 3,701
            Genes (coding)                    :: 3,657
            CDSs (with protein)               :: 3,657
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 15 of 44
            Pseudo Genes (incomplete)         :: 33 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 5 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3610213
                     /organism="Halomarina ordinaria"
                     /mol_type="genomic DNA"
                     /strain="PSRA2"
                     /isolation_source="saline soil from Tarim Basin"
                     /type_material="type strain of Halomarina ordinaria"
                     /db_xref="taxon:3033939"
                     /geo_loc_name="China: Xinjiang"
                     /collection_date="2018-05"
WGS         JARRAH010000001-JARRAH010000006
WGS_SCAFLD  NZ_JARRAH010000001-NZ_JARRAH010000006
//
LOCUS       NZ_VOTZ01000000      2342634 bp    DNA     linear   BCT 31-JUL-2025
DEFINITION  Methanocalculus taiwanensis strain P2F9704a, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VOTZ00000000
VERSION     NZ_VOTZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12512004
            Assembly: GCF_024372745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocalculus taiwanensis
  ORGANISM  Methanocalculus taiwanensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanocalculaceae;
            Methanocalculus.
REFERENCE   1  (bases 1 to 2342634)
  AUTHORS   Chen,S.-C., Lai,M.-C. and You,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2019) Department of Life Sciences, National Chung
            Hsing University, No. 145, Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VOTZ00000000.1.
            The Methanocalculus taiwanensis whole genome shotgun (WGS) project
            has the project accession NZ_VOTZ00000000.  This version of the
            project (01) has the accession number NZ_VOTZ01000000, and consists
            of sequences VOTZ01000001-VOTZ01000069.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Department of Life Sciences,
            National Chung Hsing University, Taichung, Taiwan; PI: Prof.
            Mei-Chin Lai; DSM:14663; BCRC:16182.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 08-JUL-2019
            Assembly Method        :: SPAdes v. July-2019
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 425.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024372745.1-RS_2025_07_31
            Annotation Date                   :: 07/31/2025 10:33:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,374
            CDSs (total)                      :: 2,321
            Genes (coding)                    :: 2,310
            CDSs (with protein)               :: 2,310
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 9 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342634
                     /organism="Methanocalculus taiwanensis"
                     /mol_type="genomic DNA"
                     /strain="P2F9704a"
                     /isolation_source="estuary"
                     /culture_collection="DSM:14663"
                     /type_material="type strain of Methanocalculus
                     taiwanensis"
                     /db_xref="taxon:106207"
                     /geo_loc_name="Taiwan: an estuary in Erlin Shi"
                     /collection_date="1997"
                     /collected_by="Mei-Chin Lai"
                     /identified_by="Sheng-Chung Chen"
WGS         VOTZ01000001-VOTZ01000069
WGS_SCAFLD  NZ_VOTZ01000001-NZ_VOTZ01000069
//
LOCUS       NZ_CAUHCB010000000   1770583 bp    DNA     linear   ENV 31-JUL-2025
DEFINITION  MAG: Methanosphaera cuniculi isolate
            SRR16279946_bin.7_MetaWRAP_v1.3_MAG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAUHCB000000000
VERSION     NZ_CAUHCB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114122036
            Sequence Read Archive: SRR16279946
            Assembly: GCF_959604805.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanosphaera cuniculi (human feces metagenome)
  ORGANISM  Methanosphaera cuniculi
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1770583)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2023) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAUHCB000000000.1.
            The Methanosphaera cuniculi whole genome shotgun (WGS) project has
            the project accession NZ_CAUHCB000000000.  This version of the
            project (01) has the accession number NZ_CAUHCB010000000, and
            consists of sequences CAUHCB010000001-CAUHCB010000028.
            This is an EMG-produced Third Party Annotation (TPA) bin derived
            from the primary whole genome shotgun (WGS) data set SRP340671.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run SRR16279946.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_959604805.1-RS_2025_07_31
            Annotation Date                   :: 07/31/2025 11:03:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,518
            CDSs (total)                      :: 1,476
            Genes (coding)                    :: 1,467
            CDSs (with protein)               :: 1,467
            Genes (RNA)                       :: 42
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 1 of 9
            Pseudo Genes (incomplete)         :: 7 of 9
            Pseudo Genes (internal stop)      :: 1 of 9
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770583
                     /organism="Methanosphaera cuniculi"
                     /mol_type="genomic DNA"
                     /isolate="SRR16279946_bin.7_MetaWRAP_v1.3_MAG"
                     /isolation_source="human feces metagenome"
                     /db_xref="taxon:1077256"
                     /environmental_sample
                     /metagenome_source="human feces metagenome"
                     /metagenomic
WGS         CAUHCB010000001-CAUHCB010000028
WGS_SCAFLD  NZ_CAUHCB010000001-NZ_CAUHCB010000028
//
LOCUS       NZ_VUYS01000000      3224403 bp    DNA     linear   BCT 01-AUG-2025
DEFINITION  Candidatus Nitrosocosmicus agrestis strain SS, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VUYS00000000
VERSION     NZ_VUYS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12711575
            Assembly: GCF_008389435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosocosmicus agrestis
  ORGANISM  Candidatus Nitrosocosmicus agrestis
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Candidatus Nitrosocosmicus.
REFERENCE   1  (bases 1 to 3224403)
  AUTHORS   Liu,L.
  TITLE     Physiological and genomic analysis of Candidatus Nitrosocosmicus
            agrestis, an ammonia tolerant ammonia-oxidizing archaeon from
            vegetable soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3224403)
  AUTHORS   Liu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2019) School of Biology and Biological
            Engineering, South China University of Technology (SCUT), 382
            Zhonghuan Road East, Guangzhou Higher Education Mega Centre,
            Guangzhou, Guangdong 510006, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VUYS00000000.1.
            The Candidatus Nitrosocosmicus agrestis whole genome shotgun (WGS)
            project has the project accession NZ_VUYS00000000.  This version of
            the project (01) has the accession number NZ_VUYS01000000, and
            consists of sequences VUYS01000001-VUYS01000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation of KAA2281433.1 was modified by submitter in Nov 2019.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 576.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008389435.1-RS_2025_08_01
            Annotation Date                   :: 08/01/2025 10:15:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,155
            CDSs (total)                      :: 3,104
            Genes (coding)                    :: 3,068
            CDSs (with protein)               :: 3,068
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 23 of 36
            Pseudo Genes (internal stop)      :: 11 of 36
            Pseudo Genes (multiple problems)  :: 8 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3224403
                     /organism="Candidatus Nitrosocosmicus agrestis"
                     /mol_type="genomic DNA"
                     /strain="SS"
                     /isolation_source="vegetable soil"
                     /db_xref="taxon:2563600"
                     /geo_loc_name="China: Guangzhou"
                     /lat_lon="23.16 N 113.23 E"
                     /collection_date="2018-11-30"
WGS         VUYS01000001-VUYS01000043
WGS_SCAFLD  NZ_VUYS01000001-NZ_VUYS01000043
//
LOCUS       NZ_SRPK01000000      3216683 bp    DNA     linear   BCT 01-AUG-2025
DEFINITION  Candidatus Nitrosocosmicus agrestis strain SS, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SRPK00000000
VERSION     NZ_SRPK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11337466
            Assembly: GCF_009861625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Candidatus Nitrosocosmicus agrestis
  ORGANISM  Candidatus Nitrosocosmicus agrestis
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Candidatus Nitrosocosmicus.
REFERENCE   1  (bases 1 to 3216683)
  AUTHORS   Liu,L.
  TITLE     A biofilm formed, highly ammonia tolerant ammonia-oxidizing
            thaumarchaeon from a vegetable field
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3216683)
  AUTHORS   Liu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAY-2019) School of Biology and Biological
            Engineering, South China University of Technology (SCUT), 382
            Zhonghuan Road East, Guangzhou Higher Education Mega Centre,
            Guangzhou, Guangdong 510006, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SRPK00000000.1.
            The Candidatus Nitrosocosmicus agrestis whole genome shotgun (WGS)
            project has the project accession NZ_SRPK00000000.  This version of
            the project (01) has the accession number NZ_SRPK01000000, and
            consists of sequences SRPK01000001-SRPK01000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 895.6x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009861625.1-RS_2025_08_01
            Annotation Date                   :: 08/01/2025 10:21:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,152
            CDSs (total)                      :: 3,101
            Genes (coding)                    :: 3,061
            CDSs (with protein)               :: 3,061
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 12 of 40
            Pseudo Genes (incomplete)         :: 27 of 40
            Pseudo Genes (internal stop)      :: 11 of 40
            Pseudo Genes (multiple problems)  :: 8 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216683
                     /organism="Candidatus Nitrosocosmicus agrestis"
                     /mol_type="genomic DNA"
                     /strain="SS"
                     /isolation_source="vegetable soil"
                     /db_xref="taxon:2563600"
                     /geo_loc_name="China: Guangzhou"
                     /collection_date="2018-11-30"
WGS         SRPK01000001-SRPK01000047
WGS_SCAFLD  NZ_SRPK01000001-NZ_SRPK01000047
//
LOCUS       NZ_JASNVW010000000   1743696 bp    DNA     linear   BCT 04-AUG-2025
DEFINITION  Ignisphaera cupida strain 4213-co, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JASNVW000000000
VERSION     NZ_JASNVW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35529470
            Assembly: GCF_030186535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ignisphaera cupida
  ORGANISM  Ignisphaera cupida
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Ignisphaera.
REFERENCE   1  (bases 1 to 1743696)
  AUTHORS   Podosokorskaya,O.A., Elcheninov,A.G., Klukina,A. and Merkel,A.Y.
  TITLE     A new hyperthermophilic archaea 'Ignisphaera cupida' sp. nov. and
            description of the family 'Ignisphaeraceae' fam. nov
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1743696)
  AUTHORS   Merkel,A.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAY-2023) Depratment of Extremophiles Biology,
            Research Center of Biotechnology RAS, 7/2, Prospekt 60-letiya
            Oktyabrya, Moscow, Moscow 117312, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASNVW000000000.1.
            The Ignisphaera cupida whole genome shotgun (WGS) project has the
            project accession NZ_JASNVW000000000.  This version of the project
            (01) has the accession number NZ_JASNVW010000000, and consists of
            sequences JASNVW010000001-JASNVW010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1000.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030186535.1-RS_2025_08_04
            Annotation Date                   :: 08/04/2025 10:58:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,858
            CDSs (total)                      :: 1,808
            Genes (coding)                    :: 1,792
            CDSs (with protein)               :: 1,792
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 2 of 16
            Pseudo Genes (incomplete)         :: 13 of 16
            Pseudo Genes (internal stop)      :: 1 of 16
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743696
                     /organism="Ignisphaera cupida"
                     /mol_type="genomic DNA"
                     /strain="4213-co"
                     /isolation_source="terrestrial hot spring"
                     /type_material="type strain of Ignisphaera cupida"
                     /db_xref="taxon:3050454"
                     /geo_loc_name="Russia: Kamchatka, Uzon"
                     /collection_date="2021-08"
WGS         JASNVW010000001-JASNVW010000014
WGS_SCAFLD  NZ_JASNVW010000001-NZ_JASNVW010000014
//
LOCUS       NZ_JAQFFK010000000   1972843 bp    DNA     linear   BCT 05-AUG-2025
DEFINITION  Methanococcoides alaskense strain DSM 17273, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQFFK000000000
VERSION     NZ_JAQFFK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32542144
            Assembly: GCF_027594145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanococcoides alaskense
  ORGANISM  Methanococcoides alaskense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1  (bases 1 to 1972843)
  AUTHORS   Chen,S.-C., Lai,S.-J. and You,Y.-T.
  TITLE     Draft genome of Methanococcoides alaskense DSM 17273
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1972843)
  AUTHORS   Chen,S.-C., Lai,S.-J. and You,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2023) Department of Resources and Environmental
            Sciences, Sanming University, No. 25, Jingdong Rd., Sanming, Fujian
            365004, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQFFK000000000.1.
            The Methanococcoides alaskense whole genome shotgun (WGS) project
            has the project accession NZ_JAQFFK000000000.  This version of the
            project (01) has the accession number NZ_JAQFFK010000000, and
            consists of sequences JAQFFK010000001-JAQFFK010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from DSM:17273.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2023
            Assembly Method        :: hifiasm v. v. 0.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 519.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027594145.1-RS_2025_08_05
            Annotation Date                   :: 08/05/2025 11:08:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,922
            CDSs (total)                      :: 1,876
            Genes (coding)                    :: 1,841
            CDSs (with protein)               :: 1,841
            Genes (RNA)                       :: 46
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 33
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 10 of 35
            Pseudo Genes (incomplete)         :: 18 of 35
            Pseudo Genes (internal stop)      :: 14 of 35
            Pseudo Genes (multiple problems)  :: 6 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972843
                     /organism="Methanococcoides alaskense"
                     /mol_type="genomic DNA"
                     /strain="DSM 17273"
                     /isolation_source="marine sediment"
                     /culture_collection="DSM:17273"
                     /type_material="type strain of Methanococcoides alaskense"
                     /db_xref="taxon:325778"
                     /geo_loc_name="USA: Skan Bay, Alaska"
                     /lat_lon="53.65 N 167.08 W"
WGS         JAQFFK010000001-JAQFFK010000006
WGS_SCAFLD  NZ_JAQFFK010000001-NZ_JAQFFK010000006
//
LOCUS       NZ_CBFHNO010000000   2212606 bp    DNA     linear   ENV 06-AUG-2025
DEFINITION  MAG: Poseidonia sp. isolate AGTU_62_bin_40_permissive, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CBFHNO000000000
VERSION     NZ_CBFHNO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA118801282
            Sequence Read Archive: ERR15116645, ERR15116646, ERR15116647,
            ERR15116648, ERR15116649, ERR15116650, ERR15116651, ERR15116652,
            ERR15116653, ERR15116654, ERR15116655, ERR15116656, ERR15116657,
            ERR15116658, ERR15116659, ERR15116660, ERR15116661, ERR15116662,
            ERR15116663, ERR15116664, ERR15116665, ERR15116666, ERR15116667,
            ERR15116668, ERR15116669, ERR15116670, ERR15116671, ERR15116672,
            ERR15116673, ERR15116674, ERR15116675, ERR15116676, ERR15116677,
            ERR15116678, ERR15116679, ERR15116680, ERR15116681, ERR15116682,
            ERR15116683, ERR15116684, ERR15116685, ERR15116686, ERR15116687,
            ERR15116688, ERR15116689, ERR15116690, ERR15116691, ERR15116692,
            ERR15116693, ERR15116694, ERR15116695, ERR15116696, ERR15116697,
            ERR15116698, ERR15116699, ERR15116700, ERR15116701, ERR15116702,
            ERR15116703, ERR15116704, ERR15116705, ERR15116706, ERR15116707,
            ERR15116708, ERR15116709, ERR15116710, ERR15116711, ERR15116712,
            ERR15116713, ERR15116714, ERR15116715, ERR15116716, ERR15116717,
            ERR15116718, ERR15116719, ERR15116720, ERR15116721, ERR15116722,
            ERR15116723, ERR15116724, ERR15116725, ERR15116726, ERR15116843,
            ERR15116844, ERR15116845, ERR15116846, ERR15116847, ERR15116848,
            ERR15116849, ERR15116850, ERR15116851, ERR15116852, ERR15116853,
            ERR15116854, ERR15116855, ERR15116856, ERR15116857, ERR15116858,
            ERR15116859, ERR15116860, ERR15116861, ERR15116862, ERR15116863,
            ERR15116864, ERR15116865, ERR15116866, ERR15116867, ERR15116868,
            ERR15116869, ERR15116870, ERR15116871, ERR15116872, ERR15116873,
            ERR15116874, ERR15116875, ERR15116876, ERR15116877, ERR15116878,
            ERR15116879, ERR15116880, ERR15116881, ERR15116882
            Assembly: GCF_965657265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Poseidonia sp. (marine plankton metagenome)
  ORGANISM  Poseidonia sp.
            Archaea; Methanobacteriati; Thermoplasmatota; Candidatus
            Poseidoniia; Candidatus Poseidoniales; Candidatus Poseidoniaceae;
            Candidatus Poseidonia.
REFERENCE   1  (bases 1 to 2212606)
  AUTHORS   Maeke DENICE,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2025) Leibniz-Institute for Baltic Sea Research
            Warnemuende (IOW), Biological Oceanography, Seestr. 15, 18119
            Rostock, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBFHNO000000000.1.
            The Poseidonia sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBFHNO000000000.  This version of the project
            (01) has the accession number NZ_CBFHNO010000000, and consists of
            sequences CBFHNO010000001-CBFHNO010000100.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965657265.1-RS_2025_08_06
            Annotation Date                   :: 08/06/2025 00:33:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,921
            CDSs (total)                      :: 1,870
            Genes (coding)                    :: 1,850
            CDSs (with protein)               :: 1,850
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 1 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 1 of 20
            Pseudo Genes (incomplete)         :: 19 of 20
            Pseudo Genes (internal stop)      :: 0 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212606
                     /organism="Poseidonia sp."
                     /mol_type="genomic DNA"
                     /isolate="AGTU_62_bin_40_permissive"
                     /isolation_source="marine water"
                     /db_xref="taxon:2666344"
                     /environmental_sample
                     /metagenome_source="marine plankton metagenome"
                     /metagenomic
WGS         CBFHNO010000001-CBFHNO010000100
WGS_SCAFLD  NZ_CBFHNO010000001-NZ_CBFHNO010000100
//
LOCUS       NZ_JADIIL010000000   2442285 bp    DNA     linear   ENV 06-AUG-2025
DEFINITION  MAG: Methanobacterium formicicum isolate bin2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JADIIL000000000
VERSION     NZ_JADIIL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16521386
            Assembly: GCF_015351695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium formicicum (biocathode metagenome)
  ORGANISM  Methanobacterium formicicum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2442285)
  AUTHORS   Matturro,B.
  TITLE     Dehalococcoides mccartyi of a TCE/Cr reducing biochatode
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2442285)
  AUTHORS   Matturro,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2020) National Research Council, Water Research
            Institute, IRSA-CNR, Via Salaria km 29, 300 - C.P. 10, Rome, Rome
            00015, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADIIL000000000.1.
            The Methanobacterium formicicum whole genome shotgun (WGS) project
            has the project accession NZ_JADIIL000000000.  This version of the
            project (01) has the accession number NZ_JADIIL010000000, and
            consists of sequences JADIIL010000001-JADIIL010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015351695.1-RS_2025_08_06
            Annotation Date                   :: 08/06/2025 10:40:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,476
            CDSs (total)                      :: 2,427
            Genes (coding)                    :: 2,416
            CDSs (with protein)               :: 2,416
            Genes (RNA)                       :: 49
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 0 of 11
            Pseudo Genes (incomplete)         :: 10 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442285
                     /organism="Methanobacterium formicicum"
                     /mol_type="genomic DNA"
                     /isolate="bin2"
                     /isolation_source="TCE/Cr reducing biocathode"
                     /db_xref="taxon:2162"
                     /environmental_sample
                     /geo_loc_name="Italy:Rome"
                     /lat_lon="41 N 12 E"
                     /collection_date="2019-09"
                     /metagenome_source="biocathode metagenome"
                     /metagenomic
WGS         JADIIL010000001-JADIIL010000040
WGS_SCAFLD  NZ_JADIIL010000001-NZ_JADIIL010000040
//
LOCUS       NZ_JAQLTV010000000   3540615 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM093, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLTV000000000
VERSION     NZ_JAQLTV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798475
            Assembly: GCF_028211005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3540615)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3540615)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLTV000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLTV000000000.  This version of the
            project (01) has the accession number NZ_JAQLTV010000000, and
            consists of sequences JAQLTV010000001-JAQLTV010000118.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211005.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:44:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,660
            CDSs (total)                      :: 3,595
            Genes (coding)                    :: 3,429
            CDSs (with protein)               :: 3,429
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 166
            CDSs (without protein)            :: 166
            Pseudo Genes (ambiguous residues) :: 0 of 166
            Pseudo Genes (frameshifted)       :: 31 of 166
            Pseudo Genes (incomplete)         :: 134 of 166
            Pseudo Genes (internal stop)      :: 29 of 166
            Pseudo Genes (multiple problems)  :: 27 of 166
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540615
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM093"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLTV010000001-JAQLTV010000118
WGS_SCAFLD  NZ_JAQLTV010000001-NZ_JAQLTV010000118
//
LOCUS       NZ_JAQLUM010000000   3559600 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM011, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUM000000000
VERSION     NZ_JAQLUM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798458
            Assembly: GCF_028211335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3559600)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3559600)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUM000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUM000000000.  This version of the
            project (01) has the accession number NZ_JAQLUM010000000, and
            consists of sequences JAQLUM010000001-JAQLUM010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211335.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:44:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,604
            CDSs (total)                      :: 3,537
            Genes (coding)                    :: 3,404
            CDSs (with protein)               :: 3,404
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 36 of 133
            Pseudo Genes (incomplete)         :: 104 of 133
            Pseudo Genes (internal stop)      :: 30 of 133
            Pseudo Genes (multiple problems)  :: 32 of 133
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559600
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM011"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUM010000001-JAQLUM010000040
WGS_SCAFLD  NZ_JAQLUM010000001-NZ_JAQLUM010000040
//
LOCUS       NZ_JAQLUF010000000   3541518 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM032, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUF000000000
VERSION     NZ_JAQLUF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798465
            Assembly: GCF_028211255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3541518)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3541518)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUF000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUF000000000.  This version of the
            project (01) has the accession number NZ_JAQLUF010000000, and
            consists of sequences JAQLUF010000001-JAQLUF010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211255.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:46:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,559
            CDSs (total)                      :: 3,490
            Genes (coding)                    :: 3,367
            CDSs (with protein)               :: 3,367
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 18 of 123
            Pseudo Genes (incomplete)         :: 106 of 123
            Pseudo Genes (internal stop)      :: 20 of 123
            Pseudo Genes (multiple problems)  :: 18 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541518
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM032"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUF010000001-JAQLUF010000074
WGS_SCAFLD  NZ_JAQLUF010000001-NZ_JAQLUF010000074
//
LOCUS       NZ_JAQLTY010000000   3532832 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM063, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLTY000000000
VERSION     NZ_JAQLTY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798472
            Assembly: GCF_028211205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3532832)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3532832)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLTY000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLTY000000000.  This version of the
            project (01) has the accession number NZ_JAQLTY010000000, and
            consists of sequences JAQLTY010000001-JAQLTY010000070.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211205.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:45:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,581
            CDSs (total)                      :: 3,515
            Genes (coding)                    :: 3,389
            CDSs (with protein)               :: 3,389
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 29 of 126
            Pseudo Genes (incomplete)         :: 104 of 126
            Pseudo Genes (internal stop)      :: 23 of 126
            Pseudo Genes (multiple problems)  :: 28 of 126
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3532832
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM063"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLTY010000001-JAQLTY010000070
WGS_SCAFLD  NZ_JAQLTY010000001-NZ_JAQLTY010000070
//
LOCUS       NZ_JAQLUJ010000000   3575946 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM016, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUJ000000000
VERSION     NZ_JAQLUJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798461
            Assembly: GCF_028211175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3575946)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3575946)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUJ000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUJ000000000.  This version of the
            project (01) has the accession number NZ_JAQLUJ010000000, and
            consists of sequences JAQLUJ010000001-JAQLUJ010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211175.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:43:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,637
            CDSs (total)                      :: 3,570
            Genes (coding)                    :: 3,426
            CDSs (with protein)               :: 3,426
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 37 of 144
            Pseudo Genes (incomplete)         :: 115 of 144
            Pseudo Genes (internal stop)      :: 30 of 144
            Pseudo Genes (multiple problems)  :: 33 of 144
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575946
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM016"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUJ010000001-JAQLUJ010000074
WGS_SCAFLD  NZ_JAQLUJ010000001-NZ_JAQLUJ010000074
//
LOCUS       NZ_JAQLTX010000000   3542729 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM081, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLTX000000000
VERSION     NZ_JAQLTX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798473
            Assembly: GCF_028211185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3542729)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3542729)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLTX000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLTX000000000.  This version of the
            project (01) has the accession number NZ_JAQLTX010000000, and
            consists of sequences JAQLTX010000001-JAQLTX010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211185.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:46:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,607
            CDSs (total)                      :: 3,541
            Genes (coding)                    :: 3,411
            CDSs (with protein)               :: 3,411
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 24 of 130
            Pseudo Genes (incomplete)         :: 107 of 130
            Pseudo Genes (internal stop)      :: 27 of 130
            Pseudo Genes (multiple problems)  :: 26 of 130
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3542729
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM081"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLTX010000001-JAQLTX010000072
WGS_SCAFLD  NZ_JAQLTX010000001-NZ_JAQLTX010000072
//
LOCUS       NZ_JAQLUL010000000   3567057 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM013, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUL000000000
VERSION     NZ_JAQLUL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798459
            Assembly: GCF_028211375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3567057)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3567057)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUL000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUL000000000.  This version of the
            project (01) has the accession number NZ_JAQLUL010000000, and
            consists of sequences JAQLUL010000001-JAQLUL010000057.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211375.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:47:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,624
            CDSs (total)                      :: 3,556
            Genes (coding)                    :: 3,413
            CDSs (with protein)               :: 3,413
            Genes (RNA)                       :: 68
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 143
            CDSs (without protein)            :: 143
            Pseudo Genes (ambiguous residues) :: 0 of 143
            Pseudo Genes (frameshifted)       :: 36 of 143
            Pseudo Genes (incomplete)         :: 112 of 143
            Pseudo Genes (internal stop)      :: 32 of 143
            Pseudo Genes (multiple problems)  :: 32 of 143
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3567057
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM013"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUL010000001-JAQLUL010000057
WGS_SCAFLD  NZ_JAQLUL010000001-NZ_JAQLUL010000057
//
LOCUS       NZ_JAQLUD010000000   3367875 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM036, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUD000000000
VERSION     NZ_JAQLUD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798467
            Assembly: GCF_028210825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3367875)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3367875)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUD000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUD000000000.  This version of the
            project (01) has the accession number NZ_JAQLUD010000000, and
            consists of sequences JAQLUD010000001-JAQLUD010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028210825.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:41:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,438
            CDSs (total)                      :: 3,370
            Genes (coding)                    :: 3,248
            CDSs (with protein)               :: 3,248
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 23 of 122
            Pseudo Genes (incomplete)         :: 102 of 122
            Pseudo Genes (internal stop)      :: 18 of 122
            Pseudo Genes (multiple problems)  :: 21 of 122
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367875
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM036"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUD010000001-JAQLUD010000078
WGS_SCAFLD  NZ_JAQLUD010000001-NZ_JAQLUD010000078
//
LOCUS       NZ_JAQLUC010000000   3421608 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM037, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUC000000000
VERSION     NZ_JAQLUC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798468
            Assembly: GCF_028211355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3421608)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3421608)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUC000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUC000000000.  This version of the
            project (01) has the accession number NZ_JAQLUC010000000, and
            consists of sequences JAQLUC010000001-JAQLUC010000100.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211355.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:44:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,487
            CDSs (total)                      :: 3,419
            Genes (coding)                    :: 3,280
            CDSs (with protein)               :: 3,280
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 27 of 139
            Pseudo Genes (incomplete)         :: 117 of 139
            Pseudo Genes (internal stop)      :: 16 of 139
            Pseudo Genes (multiple problems)  :: 21 of 139
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421608
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM037"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUC010000001-JAQLUC010000100
WGS_SCAFLD  NZ_JAQLUC010000001-NZ_JAQLUC010000100
//
LOCUS       NZ_JAQLUK010000000   4069511 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM015, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUK000000000
VERSION     NZ_JAQLUK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798460
            Assembly: GCF_028210945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 4069511)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4069511)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUK000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUK000000000.  This version of the
            project (01) has the accession number NZ_JAQLUK010000000, and
            consists of sequences JAQLUK010000001-JAQLUK010000342.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028210945.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:47:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,264
            CDSs (total)                      :: 4,188
            Genes (coding)                    :: 3,924
            CDSs (with protein)               :: 3,924
            Genes (RNA)                       :: 76
            rRNAs                             :: 1, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 3 (16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 264
            CDSs (without protein)            :: 264
            Pseudo Genes (ambiguous residues) :: 0 of 264
            Pseudo Genes (frameshifted)       :: 46 of 264
            Pseudo Genes (incomplete)         :: 225 of 264
            Pseudo Genes (internal stop)      :: 45 of 264
            Pseudo Genes (multiple problems)  :: 45 of 264
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4069511
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM015"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUK010000001-JAQLUK010000342
WGS_SCAFLD  NZ_JAQLUK010000001-NZ_JAQLUK010000342
//
LOCUS       NZ_JAQLUH010000000   3455161 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM027, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUH000000000
VERSION     NZ_JAQLUH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798463
            Assembly: GCF_028210995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3455161)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3455161)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUH000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUH000000000.  This version of the
            project (01) has the accession number NZ_JAQLUH010000000, and
            consists of sequences JAQLUH010000001-JAQLUH010000086.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028210995.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:46:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,540
            CDSs (total)                      :: 3,473
            Genes (coding)                    :: 3,341
            CDSs (with protein)               :: 3,341
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 33 of 132
            Pseudo Genes (incomplete)         :: 106 of 132
            Pseudo Genes (internal stop)      :: 28 of 132
            Pseudo Genes (multiple problems)  :: 30 of 132
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3455161
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM027"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUH010000001-JAQLUH010000086
WGS_SCAFLD  NZ_JAQLUH010000001-NZ_JAQLUH010000086
//
LOCUS       NZ_JAQLUB010000000   3653627 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM044, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUB000000000
VERSION     NZ_JAQLUB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798469
            Assembly: GCF_028211285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3653627)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3653627)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUB000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUB000000000.  This version of the
            project (01) has the accession number NZ_JAQLUB010000000, and
            consists of sequences JAQLUB010000001-JAQLUB010000149.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211285.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:49:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,758
            CDSs (total)                      :: 3,690
            Genes (coding)                    :: 3,508
            CDSs (with protein)               :: 3,508
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 35 of 182
            Pseudo Genes (incomplete)         :: 151 of 182
            Pseudo Genes (internal stop)      :: 37 of 182
            Pseudo Genes (multiple problems)  :: 35 of 182
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3653627
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM044"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUB010000001-JAQLUB010000149
WGS_SCAFLD  NZ_JAQLUB010000001-NZ_JAQLUB010000149
//
LOCUS       NZ_JAQLUG010000000   3649549 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM028, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUG000000000
VERSION     NZ_JAQLUG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798464
            Assembly: GCF_028211085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3649549)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3649549)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUG000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUG000000000.  This version of the
            project (01) has the accession number NZ_JAQLUG010000000, and
            consists of sequences JAQLUG010000001-JAQLUG010000104.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211085.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:50:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,701
            CDSs (total)                      :: 3,629
            Genes (coding)                    :: 3,480
            CDSs (with protein)               :: 3,480
            Genes (RNA)                       :: 72
            rRNAs                             :: 3, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (16S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 30 of 149
            Pseudo Genes (incomplete)         :: 116 of 149
            Pseudo Genes (internal stop)      :: 26 of 149
            Pseudo Genes (multiple problems)  :: 20 of 149
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649549
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM028"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUG010000001-JAQLUG010000104
WGS_SCAFLD  NZ_JAQLUG010000001-NZ_JAQLUG010000104
//
LOCUS       NZ_JAQLUA010000000   3727447 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM045, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUA000000000
VERSION     NZ_JAQLUA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798470
            Assembly: GCF_028211275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3727447)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3727447)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUA000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUA000000000.  This version of the
            project (01) has the accession number NZ_JAQLUA010000000, and
            consists of sequences JAQLUA010000001-JAQLUA010000077.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211275.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:50:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,635
            Genes (coding)                    :: 3,528
            CDSs (with protein)               :: 3,528
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 30 of 107
            Pseudo Genes (incomplete)         :: 84 of 107
            Pseudo Genes (internal stop)      :: 28 of 107
            Pseudo Genes (multiple problems)  :: 30 of 107
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3727447
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM045"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUA010000001-JAQLUA010000077
WGS_SCAFLD  NZ_JAQLUA010000001-NZ_JAQLUA010000077
//
LOCUS       NZ_JAQLTZ010000000   3591159 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM059, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLTZ000000000
VERSION     NZ_JAQLTZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798471
            Assembly: GCF_028211395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3591159)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3591159)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLTZ000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLTZ000000000.  This version of the
            project (01) has the accession number NZ_JAQLTZ010000000, and
            consists of sequences JAQLTZ010000001-JAQLTZ010000089.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211395.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:51:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,661
            CDSs (total)                      :: 3,593
            Genes (coding)                    :: 3,444
            CDSs (with protein)               :: 3,444
            Genes (RNA)                       :: 68
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 36 of 149
            Pseudo Genes (incomplete)         :: 118 of 149
            Pseudo Genes (internal stop)      :: 32 of 149
            Pseudo Genes (multiple problems)  :: 32 of 149
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591159
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM059"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLTZ010000001-JAQLTZ010000089
WGS_SCAFLD  NZ_JAQLTZ010000001-NZ_JAQLTZ010000089
//
LOCUS       NZ_JAQLUI010000000   3662518 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Halorubrum ezzemoulense strain AMM018, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQLUI000000000
VERSION     NZ_JAQLUI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32798462
            Assembly: GCF_028211405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ezzemoulense
  ORGANISM  Halorubrum ezzemoulense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3662518)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Halorubrum ezzemoulense from Santa Pola, Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3662518)
  AUTHORS   Feng,Y., Louyakis,A.S. and Gogarten,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2023) Molecular and Cell Biology, University of
            Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQLUI000000000.1.
            The Halorubrum ezzemoulense whole genome shotgun (WGS) project has
            the project accession NZ_JAQLUI000000000.  This version of the
            project (01) has the accession number NZ_JAQLUI010000000, and
            consists of sequences JAQLUI010000001-JAQLUI010000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028211405.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:48:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,763
            CDSs (total)                      :: 3,696
            Genes (coding)                    :: 3,560
            CDSs (with protein)               :: 3,560
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 34 of 136
            Pseudo Genes (incomplete)         :: 106 of 136
            Pseudo Genes (internal stop)      :: 23 of 136
            Pseudo Genes (multiple problems)  :: 26 of 136
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3662518
                     /organism="Halorubrum ezzemoulense"
                     /mol_type="genomic DNA"
                     /strain="AMM018"
                     /isolation_source="hypersaline saltern"
                     /db_xref="taxon:337243"
                     /geo_loc_name="Spain: Santa Pola"
                     /collection_date="2009-09"
WGS         JAQLUI010000001-JAQLUI010000068
WGS_SCAFLD  NZ_JAQLUI010000001-NZ_JAQLUI010000068
//
LOCUS       NZ_CADDYF010000000   2343956 bp    DNA     linear   BCT 07-AUG-2025
DEFINITION  Methanocella conradii isolate 1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CADDYF000000000
VERSION     NZ_CADDYF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6605112
            Assembly: GCF_902810565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanocella conradii
  ORGANISM  Methanocella conradii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.
REFERENCE   1
  AUTHORS   Hogendoorn,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2020) RADBOUD UNIVERSITY, Microbiology,
            Heyendaalseweg 135, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CADDYF000000000.1.
            The Methanocella conradii whole genome shotgun (WGS) project has
            the project accession NZ_CADDYF000000000.  This version of the
            project (01) has the accession number NZ_CADDYF010000000, and
            consists of sequences CADDYF010000001-CADDYF010000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902810565.1-RS_2025_08_07
            Annotation Date                   :: 08/07/2025 11:23:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,580
            CDSs (total)                      :: 2,527
            Genes (coding)                    :: 2,502
            CDSs (with protein)               :: 2,502
            Genes (RNA)                       :: 53
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 11 of 25
            Pseudo Genes (incomplete)         :: 14 of 25
            Pseudo Genes (internal stop)      :: 3 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343956
                     /organism="Methanocella conradii"
                     /mol_type="genomic DNA"
                     /isolate="1"
                     /db_xref="taxon:1175444"
WGS         CADDYF010000001-CADDYF010000055
WGS_SCAFLD  NZ_CADDYF010000001-NZ_CADDYF010000055
//
LOCUS       NZ_BBBZ01000000      1591049 bp    DNA     linear   BCT 08-AUG-2025
DEFINITION  Aeropyrum camini SY1 = JCM 12091, whole genome shotgun sequencing
            project.
ACCESSION   NZ_BBBZ00000000
VERSION     NZ_BBBZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000424
            Sequence Read Archive: DRR017705
            Assembly: GCF_001316065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeropyrum camini SY1 = JCM 12091
  ORGANISM  Aeropyrum camini SY1 = JCM 12091
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Desulfurococcaceae; Aeropyrum.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1591049)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBZ00000000.1.
            The Aeropyrum camini SY1 = JCM 12091 whole genome shotgun (WGS)
            project has the project accession NZ_BBBZ00000000.  This version of
            the project (01) has the accession number NZ_BBBZ01000000, and
            consists of sequences BBBZ01000001-BBBZ01000041.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 51x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316065.1-RS_2025_08_08
            Annotation Date                   :: 08/08/2025 09:48:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,036
            CDSs (total)                      :: 1,988
            Genes (coding)                    :: 1,840
            CDSs (with protein)               :: 1,840
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 115 of 148
            Pseudo Genes (incomplete)         :: 36 of 148
            Pseudo Genes (internal stop)      :: 4 of 148
            Pseudo Genes (multiple problems)  :: 7 of 148
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591049
                     /organism="Aeropyrum camini SY1 = JCM 12091"
                     /mol_type="genomic DNA"
                     /strain="JCM 12091"
                     /culture_collection="JCM:12091"
                     /type_material="type strain of Aeropyrum camini"
                     /db_xref="taxon:1198449"
WGS         BBBZ01000001-BBBZ01000041
WGS_SCAFLD  NZ_BBBZ01000001-NZ_BBBZ01000041
//
LOCUS       NZ_BBCL01000000      2519460 bp    DNA     linear   BCT 08-AUG-2025
DEFINITION  Sulfuracidifex tepidarius strain JCM 16833, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBCL00000000
VERSION     NZ_BBCL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000537
            Sequence Read Archive: DRR017718
            Assembly: GCF_001316085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfuracidifex tepidarius
  ORGANISM  Sulfuracidifex tepidarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfuracidifex.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2519460)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBCL00000000.1.
            The Sulfuracidifex tepidarius whole genome shotgun (WGS) project
            has the project accession NZ_BBCL00000000.  This version of the
            project (01) has the accession number NZ_BBCL01000000, and consists
            of sequences BBCL01000001-BBCL01000074.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 45x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316085.1-RS_2025_08_08
            Annotation Date                   :: 08/08/2025 09:41:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,885
            CDSs (total)                      :: 2,833
            Genes (coding)                    :: 2,477
            CDSs (with protein)               :: 2,477
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 299 of 356
            Pseudo Genes (incomplete)         :: 75 of 356
            Pseudo Genes (internal stop)      :: 21 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            CRISPR Arrays                     :: 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519460
                     /organism="Sulfuracidifex tepidarius"
                     /mol_type="genomic DNA"
                     /strain="JCM 16833"
                     /culture_collection="JCM:16833"
                     /type_material="type strain of Sulfuracidifex tepidarius"
                     /db_xref="taxon:1294262"
WGS         BBCL01000001-BBCL01000074
WGS_SCAFLD  NZ_BBCL01000001-NZ_BBCL01000074
//
LOCUS       NZ_JAUDRO010000000   3637075 bp    DNA     linear   BCT 08-AUG-2025
DEFINITION  Haloferax volcanii strain DSM 27206, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAUDRO000000000
VERSION     NZ_JAUDRO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35841318
            Assembly: GCF_030535215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloferax volcanii
  ORGANISM  Haloferax volcanii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Haloferax.
REFERENCE   1  (bases 1 to 3637075)
  AUTHORS   Buda,D.M., Bulzu,P.A. and Banciu,H.L.
  TITLE     Genome-wide transcriptional response to silver stress in extremely
            halophilic archaeon Haloferax alexandrinus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3637075)
  AUTHORS   Buda,D.M., Bulzu,P.A. and Banciu,H.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2023) Department of Molecular Biology and
            Biotechnology, Faculty of Biology and Geology, Babes Bolyai
            University, 5-7 Clinicilor Street, Cluj-Napoca, Cluj 400006,
            Romania
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUDRO000000000.1.
            The Haloferax volcanii whole genome shotgun (WGS) project has the
            project accession NZ_JAUDRO000000000.  This version of the project
            (01) has the accession number NZ_JAUDRO010000000, and consists of
            sequences JAUDRO010000001-JAUDRO010000009.
            Bacteria and source DNA available from DSM 27206.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: SPAdes v. APRIL-2020
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75.4x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030535215.1-RS_2025_08_08
            Annotation Date                   :: 08/08/2025 11:04:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,728
            CDSs (total)                      :: 3,668
            Genes (coding)                    :: 3,629
            CDSs (with protein)               :: 3,629
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 15 of 39
            Pseudo Genes (incomplete)         :: 22 of 39
            Pseudo Genes (internal stop)      :: 8 of 39
            Pseudo Genes (multiple problems)  :: 6 of 39
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637075
                     /organism="Haloferax volcanii"
                     /mol_type="genomic DNA"
                     /strain="DSM 27206"
                     /isolation_source="The Leibniz-Institute DSMZ-German
                     Collection of Microorganisms and Cell Cultures"
                     /culture_collection="DSM:27206"
                     /type_material="type strain of Haloferax alexandrinus"
                     /db_xref="taxon:2246"
WGS         JAUDRO010000001-JAUDRO010000009
WGS_SCAFLD  NZ_JAUDRO010000001-NZ_JAUDRO010000009
//
LOCUS       NZ_PGCK01000000      3193629 bp    DNA     linear   BCT 08-AUG-2025
DEFINITION  Methanooceanicella nereidis strain CWC-04, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PGCK00000000
VERSION     NZ_PGCK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07985097
            Assembly: GCF_021023085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanooceanicella nereidis
  ORGANISM  Methanooceanicella nereidis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanocellales; Methanocellaceae;
            Methanooceanicella.
REFERENCE   1  (bases 1 to 3193629)
  AUTHORS   Zhang,W.-L., Chen,W.-C., Lai,M.-C. and Chen,S.-C.
  TITLE     Isolation and Characterization of Family Methanocellaceae Species
            from Potential Methane Hydrate Area Offshore Southwestern Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3193629)
  AUTHORS   Zhang,W.-L., Lai,M.-C. and Chen,S.-C.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2017) Department of Life Sciences, National Chung
            Hsing University, 145 Xingda Rd., Taichung 40227, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PGCK00000000.1.
            The Methanooceanicella nereidis whole genome shotgun (WGS) project
            has the project accession NZ_PGCK00000000.  This version of the
            project (01) has the accession number NZ_PGCK01000000, and consists
            of sequences PGCK01000001-PGCK01000041.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Prof. Mei-Chin Lai,
            Department of Life Sciences, National Chung Hsing University,
            Taichung, Taiwan.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2017
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 313.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021023085.1-RS_2025_08_08
            Annotation Date                   :: 08/08/2025 11:06:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,151
            CDSs (total)                      :: 3,096
            Genes (coding)                    :: 3,084
            CDSs (with protein)               :: 3,084
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 11 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193629
                     /organism="Methanooceanicella nereidis"
                     /mol_type="genomic DNA"
                     /strain="CWC-04"
                     /isolation_source="marine sediment"
                     /type_material="type strain of Methanooceanicella
                     nereidis"
                     /db_xref="taxon:2052831"
                     /geo_loc_name="Taiwan: Offshore Southwestern Taiwan"
                     /collection_date="2009-05"
                     /identified_by="Wei-Ling Zhang and Mei-Chin Lai"
WGS         PGCK01000001-PGCK01000041
WGS_SCAFLD  NZ_PGCK01000001-NZ_PGCK01000041
//
LOCUS       NZ_BBBY01000000      2214633 bp    DNA     linear   BCT 08-AUG-2025
DEFINITION  Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BBBY00000000
VERSION     NZ_BBBY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00000478
            Sequence Read Archive: DRR017704
            Assembly: GCF_001316045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfuracidifex metallicus DSM 6482 = JCM 9184
  ORGANISM  Sulfuracidifex metallicus DSM 6482 = JCM 9184
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfuracidifex.
REFERENCE   1
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     NBRP : Genome information of microbial organism related human and
            environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2214633)
  AUTHORS   Hattori,M., Oshima,K., Kuroyanagi,H., Suda,W., Sakamoto,M.,
            Iino,T., Kitahara,M., Oshida,Y., Iida,T., Kudo,T., Itoh,T.,
            Kitamura,K. and Ohkuma,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2014) Contact:Masahira Hattori University of
            Tokyo, Center for Omics and Bioinformatics, Graduate School of
            Frontier Sciences; Kashiwanoha 5-1-5, Kashiwa, Chiba 277-8561,
            Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BBBY00000000.1.
            The Sulfuracidifex metallicus DSM 6482 = JCM 9184 whole genome
            shotgun (WGS) project has the project accession NZ_BBBY00000000.
            This version of the project (01) has the accession number
            NZ_BBBY01000000, and consists of sequences
            BBBY01000001-BBBY01000167.
            This work had been advanced in the National BioResource
            Project(NBRP) supported by the Ministry of Education, Culture,
            Sports, Science and Technology of Japan(MEXT) as NBRP Genome
            Information Upgrading Program.
            Source DNA and bacteria available from Microbe Division/JCM, RIKEN
            BioResource Center.
            http://www.jcm.riken.go.jp/
            Genome sequencing done by Center for Omics and Bioinformatics,
            Graduate School of Frontier Sciences, University of Tokyo.
            http://www.cb.k.u-tokyo.ac.jp/hattorilab/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 35x
            Sequencing Technology :: Ion PGM
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001316045.1-RS_2025_08_08
            Annotation Date                   :: 08/08/2025 10:53:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,798
            CDSs (total)                      :: 2,745
            Genes (coding)                    :: 2,265
            CDSs (with protein)               :: 2,265
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 480
            CDSs (without protein)            :: 480
            Pseudo Genes (ambiguous residues) :: 1 of 480
            Pseudo Genes (frameshifted)       :: 421 of 480
            Pseudo Genes (incomplete)         :: 84 of 480
            Pseudo Genes (internal stop)      :: 18 of 480
            Pseudo Genes (multiple problems)  :: 40 of 480
            CRISPR Arrays                     :: 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214633
                     /organism="Sulfuracidifex metallicus DSM 6482 = JCM 9184"
                     /mol_type="genomic DNA"
                     /strain="JCM 9184"
                     /culture_collection="JCM:9184"
                     /type_material="type strain of Sulfolobus metallicus"
                     /db_xref="taxon:523847"
WGS         BBBY01000001-BBBY01000167
WGS_SCAFLD  NZ_BBBY01000001-NZ_BBBY01000167
//
LOCUS       NZ_JBJEIP010000000   1901759 bp    DNA     linear   ENV 09-AUG-2025
DEFINITION  MAG: Methanobrevibacter ruminantium isolate SARD01_bin.044, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBJEIP000000000
VERSION     NZ_JBJEIP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43789130
            Sequence Read Archive: SRR30616780
            Assembly: GCF_051877175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (pig gut metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1901759)
  AUTHORS   Heng,Y.C. and Kittelmann,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2024) Wilmar Corporate Laboratory, Wilmar
            International Limited, 28 Biopolis Road, Singapore 138568,
            Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJEIP000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_JBJEIP000000000.  This version
            of the project (01) has the accession number NZ_JBJEIP010000000,
            and consists of sequences JBJEIP010000001-JBJEIP010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2023
            Assembly Method        :: metaSPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051877175.1-RS_2025_08_09
            Annotation Date                   :: 08/09/2025 12:18:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,875
            CDSs (total)                      :: 1,835
            Genes (coding)                    :: 1,821
            CDSs (with protein)               :: 1,821
            Genes (RNA)                       :: 40
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 8 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901759
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="SARD01_bin.044"
                     /isolation_source="feces of wild boar"
                     /host="Sus scrofa"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /geo_loc_name="Italy: Sardinia"
                     /lat_lon="40.1209 N 9.0129 E"
                     /collection_date="2019-06-09"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JBJEIP010000001-JBJEIP010000022
WGS_SCAFLD  NZ_JBJEIP010000001-NZ_JBJEIP010000022
//
LOCUS       NZ_JBJEIM010000000   1558059 bp    DNA     linear   ENV 09-AUG-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate PUUB14_bin.015, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBJEIM000000000
VERSION     NZ_JBJEIM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43789133
            Sequence Read Archive: SRR30616825
            Assembly: GCF_051877055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (pig gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1558059)
  AUTHORS   Heng,Y.C. and Kittelmann,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2024) Wilmar Corporate Laboratory, Wilmar
            International Limited, 28 Biopolis Road, Singapore 138568,
            Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJEIM000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBJEIM000000000.  This version of the
            project (01) has the accession number NZ_JBJEIM010000000, and
            consists of sequences JBJEIM010000001-JBJEIM010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2023
            Assembly Method        :: metaSPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051877055.1-RS_2025_08_09
            Annotation Date                   :: 08/09/2025 12:21:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,682
            CDSs (total)                      :: 1,648
            Genes (coding)                    :: 1,627
            CDSs (with protein)               :: 1,627
            Genes (RNA)                       :: 34
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 2 of 21
            Pseudo Genes (incomplete)         :: 17 of 21
            Pseudo Genes (internal stop)      :: 3 of 21
            Pseudo Genes (multiple problems)  :: 1 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558059
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="PUUB14_bin.015"
                     /isolation_source="feces of wild boar"
                     /host="Sus scrofa vittatus"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Singapore: Pulau Ubin"
                     /lat_lon="1.405 N 103.970 E"
                     /collection_date="2019-06-04"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JBJEIM010000001-JBJEIM010000041
WGS_SCAFLD  NZ_JBJEIM010000001-NZ_JBJEIM010000041
//
LOCUS       NZ_JBJEIO010000000   1525213 bp    DNA     linear   ENV 09-AUG-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate SARD03_bin.040, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBJEIO000000000
VERSION     NZ_JBJEIO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43789131
            Sequence Read Archive: SRR30616778
            Assembly: GCF_051877095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (pig gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1525213)
  AUTHORS   Heng,Y.C. and Kittelmann,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2024) Wilmar Corporate Laboratory, Wilmar
            International Limited, 28 Biopolis Road, Singapore 138568,
            Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJEIO000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JBJEIO000000000.  This version of the
            project (01) has the accession number NZ_JBJEIO010000000, and
            consists of sequences JBJEIO010000001-JBJEIO010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2023
            Assembly Method        :: metaSPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051877095.1-RS_2025_08_09
            Annotation Date                   :: 08/09/2025 12:22:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,655
            CDSs (total)                      :: 1,621
            Genes (coding)                    :: 1,606
            CDSs (with protein)               :: 1,606
            Genes (RNA)                       :: 34
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 2 of 15
            Pseudo Genes (incomplete)         :: 10 of 15
            Pseudo Genes (internal stop)      :: 4 of 15
            Pseudo Genes (multiple problems)  :: 1 of 15
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525213
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="SARD03_bin.040"
                     /isolation_source="feces of wild boar"
                     /host="Sus scrofa"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Italy: Sardinia"
                     /lat_lon="40.1209 N 9.0129 E"
                     /collection_date="2019-06-09"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JBJEIO010000001-JBJEIO010000014
WGS_SCAFLD  NZ_JBJEIO010000001-NZ_JBJEIO010000014
//
LOCUS       NZ_JALXFV010000000   4067544 bp    DNA     linear   BCT 12-AUG-2025
DEFINITION  Halomarina rubra strain ZS-47-S, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALXFV000000000
VERSION     NZ_JALXFV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27867787
            Assembly: GCF_023699475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomarina rubra
  ORGANISM  Halomarina rubra
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halomarina.
REFERENCE   1  (bases 1 to 4067544)
  AUTHORS   Zhou,Y., Li,Y., Lu,Z.Z. and Cui,H.L.
  TITLE     Halomarina rubra sp. nov., isolated from a marine solar saltern
  JOURNAL   Arch Microbiol 199 (10), 1431-1435 (2017)
   PUBMED   28779470
REFERENCE   2  (bases 1 to 4067544)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-APR-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALXFV000000000.1.
            The Halomarina rubra whole genome shotgun (WGS) project has the
            project accession NZ_JALXFV000000000.  This version of the project
            (01) has the accession number NZ_JALXFV010000000, and consists of
            sequences JALXFV010000001-JALXFV010000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 251.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023699475.1-RS_2025_08_12
            Annotation Date                   :: 08/12/2025 13:21:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,286
            CDSs (total)                      :: 4,235
            Genes (coding)                    :: 4,181
            CDSs (with protein)               :: 4,181
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 2 of 54
            Pseudo Genes (frameshifted)       :: 13 of 54
            Pseudo Genes (incomplete)         :: 43 of 54
            Pseudo Genes (internal stop)      :: 4 of 54
            Pseudo Genes (multiple problems)  :: 8 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067544
                     /organism="Halomarina rubra"
                     /mol_type="genomic DNA"
                     /strain="ZS-47-S"
                     /isolation_source="Zhoushan marine solar saltern"
                     /type_material="type strain of Halomarina rubra"
                     /db_xref="taxon:2071873"
                     /geo_loc_name="China: Zhejiang"
                     /collection_date="2012-10"
WGS         JALXFV010000001-JALXFV010000016
WGS_SCAFLD  NZ_JALXFV010000001-NZ_JALXFV010000016
//
LOCUS       NZ_BCLI01000000      2022594 bp    DNA     linear   BCT 12-AUG-2025
DEFINITION  Vulcanisaeta thermophila strain CBA1501, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BCLI00000000
VERSION     NZ_BCLI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00042494
            Assembly: GCF_001748385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vulcanisaeta thermophila
  ORGANISM  Vulcanisaeta thermophila
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Vulcanisaeta.
REFERENCE   1
  AUTHORS   Roh,S.W.
  TITLE     Draft genome sequences of Vulcanisaeta thermophila CBA1501
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2022594)
  AUTHORS   Roh,S.W. and Yim,K.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2015) Contact:Seong Woon Roh Korea Basic Science
            Institute, Biological Disaster Analysis Group; 169-148 Gwahak-ro,
            Yuseong-gu, Daejeon 34133, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BCLI00000000.1.
            The Vulcanisaeta thermophila whole genome shotgun (WGS) project has
            the project accession NZ_BCLI00000000.  This version of the project
            (01) has the accession number NZ_BCLI01000000, and consists of
            sequences BCLI01000001-BCLI01000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench v. 7.5.1
            Genome Coverage       :: 688x
            Sequencing Technology :: MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001748385.1-RS_2025_08_12
            Annotation Date                   :: 08/12/2025 09:55:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,190
            CDSs (total)                      :: 2,141
            Genes (coding)                    :: 2,123
            CDSs (with protein)               :: 2,123
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 6 of 18
            Pseudo Genes (incomplete)         :: 9 of 18
            Pseudo Genes (internal stop)      :: 3 of 18
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022594
                     /organism="Vulcanisaeta thermophila"
                     /mol_type="genomic DNA"
                     /strain="CBA1501"
                     /isolation_source="soil"
                     /type_material="type strain of Vulcanisaeta thermophila"
                     /db_xref="taxon:867917"
                     /geo_loc_name="Philippines: Mayon volcano"
                     /lat_lon="13.1500 N 123.41900 E"
WGS         BCLI01000001-BCLI01000010
WGS_SCAFLD  NZ_BCLI01000001-NZ_BCLI01000010
//
LOCUS       NZ_JBQBLX010000000   4152491 bp    DNA     linear   BCT 13-AUG-2025
DEFINITION  Halomicrococcus sp. SG-WS-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBQBLX000000000
VERSION     NZ_JBQBLX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50460857
            Assembly: GCF_051917725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halomicrococcus sp. SG-WS-1
  ORGANISM  Halomicrococcus sp. SG-WS-1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Halomicrococcus.
REFERENCE   1  (bases 1 to 4152491)
  AUTHORS   Cui,H.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4152491)
  AUTHORS   Cui,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBQBLX000000000.1.
            The Halomicrococcus sp. SG-WS-1 whole genome shotgun (WGS) project
            has the project accession NZ_JBQBLX000000000.  This version of the
            project (01) has the accession number NZ_JBQBLX010000000, and
            consists of sequences JBQBLX010000001-JBQBLX010000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 380.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_051917725.1-RS_2025_08_12
            Annotation Date                   :: 08/12/2025 12:19:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,232
            CDSs (total)                      :: 4,173
            Genes (coding)                    :: 4,123
            CDSs (with protein)               :: 4,123
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 2 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 14 of 50
            Pseudo Genes (incomplete)         :: 41 of 50
            Pseudo Genes (internal stop)      :: 3 of 50
            Pseudo Genes (multiple problems)  :: 8 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4152491
                     /organism="Halomicrococcus sp. SG-WS-1"
                     /mol_type="genomic DNA"
                     /strain="SG-WS-1"
                     /isolation_source="wet soil"
                     /db_xref="taxon:3439057"
                     /geo_loc_name="China:Tianjin Shengang"
                     /collection_date="2021-07"
WGS         JBQBLX010000001-JBQBLX010000017
WGS_SCAFLD  NZ_JBQBLX010000001-NZ_JBQBLX010000017
//
LOCUS       NZ_JBGFCC010000000   5163047 bp    DNA     linear   BCT 15-AUG-2025
DEFINITION  Natrarchaeobius versutus strain A-rgal3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGFCC000000000
VERSION     NZ_JBGFCC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN42962395
            Assembly: GCF_041205745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natrarchaeobius versutus
  ORGANISM  Natrarchaeobius versutus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natrarchaeobius.
REFERENCE   1  (bases 1 to 5163047)
  AUTHORS   Sorokin,D.Y., Tulenkov,A.S. and Elcheninov,A.G.
  TITLE     Characterisation of novel Natrarchaeobius species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5163047)
  AUTHORS   Tulenkov,A.S. and Elcheninov,A.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2024) Extremophiles Metabolism Laboratory,
            Winogradsky Institute of Microbiology, Research Center of
            Biotechnology RAS, 60 let Oktjabrja pr-t, 7, bld. 2, Moscow 117312,
            Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGFCC000000000.1.
            The Natrarchaeobius versutus whole genome shotgun (WGS) project has
            the project accession NZ_JBGFCC000000000.  This version of the
            project (01) has the accession number NZ_JBGFCC010000000, and
            consists of sequences JBGFCC010000001-JBGFCC010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4; Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 350.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041205745.1-RS_2025_08_15
            Annotation Date                   :: 08/15/2025 11:56:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,841
            CDSs (total)                      :: 4,789
            Genes (coding)                    :: 4,723
            CDSs (with protein)               :: 4,723
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 28 of 66
            Pseudo Genes (incomplete)         :: 51 of 66
            Pseudo Genes (internal stop)      :: 10 of 66
            Pseudo Genes (multiple problems)  :: 21 of 66
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5163047
                     /organism="Natrarchaeobius versutus"
                     /mol_type="genomic DNA"
                     /strain="A-rgal3"
                     /isolation_source="surface oxic sediments from a mixture
                     of 3 hypersaline soda lakes"
                     /db_xref="taxon:1679078"
                     /geo_loc_name="Russia: Kulunda Steppe, southwestern
                     Siberia, Altai Region"
                     /lat_lon="51.666667 N 79.900000 E"
                     /collection_date="2022-07"
WGS         JBGFCC010000001-JBGFCC010000027
WGS_SCAFLD  NZ_JBGFCC010000001-NZ_JBGFCC010000027
//
LOCUS       NZ_JBQEQQ010000000   3048131 bp    DNA     linear   BCT 16-AUG-2025
DEFINITION  Halococcus morrhuae DSM 1307, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBQEQQ000000000
VERSION     NZ_JBQEQQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50472242
            Assembly: GCF_052043925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus morrhuae DSM 1307
  ORGANISM  Halococcus morrhuae DSM 1307
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 3048131)
  AUTHORS   Lim,S.W.
  TITLE     Pangenome analysis of Halococcus species show divergent rrn operon
            distribution and evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3048131)
  AUTHORS   Lim,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2025) Research, Binomica Labs, 4301 22nd St 3FL
            Studio 342, Long Island City, NY 11101, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBQEQQ000000000.1.
            The Halococcus morrhuae DSM 1307 whole genome shotgun (WGS) project
            has the project accession NZ_JBQEQQ000000000.  This version of the
            project (01) has the accession number NZ_JBQEQQ010000000, and
            consists of sequences JBQEQQ010000001-JBQEQQ010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Binomica labs, Sung won Lim.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 03-AUG-2025
            Assembly Method        :: Flye v. 2.9.6-b1802
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 106.0x
            Sequencing Technology  :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052043925.1-RS_2025_08_15
            Annotation Date                   :: 08/15/2025 12:42:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,130
            CDSs (total)                      :: 3,078
            Genes (coding)                    :: 3,026
            CDSs (with protein)               :: 3,026
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 11 of 52
            Pseudo Genes (incomplete)         :: 44 of 52
            Pseudo Genes (internal stop)      :: 2 of 52
            Pseudo Genes (multiple problems)  :: 5 of 52
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3048131
                     /organism="Halococcus morrhuae DSM 1307"
                     /mol_type="genomic DNA"
                     /strain="DSM 1307"
                     /isolation_source="Hyper saline ocean water"
                     /culture_collection="DSM:1307"
                     /type_material="type strain of 'Sarcina morrhuae' Farlow
                     1880"
                     /db_xref="taxon:931277"
                     /lat_lon="20.2802 N 38.5126 E"
                     /collection_date="1880"
WGS         JBQEQQ010000001-JBQEQQ010000003
WGS_SCAFLD  NZ_CM125063
WGS_SCAFLD  NZ_JBQEQQ010000002-NZ_JBQEQQ010000003
//
LOCUS       NZ_JBQEMN010000000   4246728 bp    DNA     linear   BCT 16-AUG-2025
DEFINITION  Halococcus salifodinae strain DSM 8989, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBQEMN000000000
VERSION     NZ_JBQEMN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50468620
            Assembly: GCF_052043865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halococcus salifodinae
  ORGANISM  Halococcus salifodinae
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halococcaceae; Halococcus.
REFERENCE   1  (bases 1 to 4246728)
  AUTHORS   Lim,S.W.
  TITLE     Pangenome analysis of Halococcus species show divergent rrn operon
            distribution and evolution
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4246728)
  AUTHORS   Lim,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2025) Research, Binomica Labs, 4301 22nd St 3FL
            Studio 342, Long Island City, NY 11101, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBQEMN000000000.1.
            The Halococcus salifodinae whole genome shotgun (WGS) project has
            the project accession NZ_JBQEMN000000000.  This version of the
            project (01) has the accession number NZ_JBQEMN010000000, and
            consists of sequences JBQEMN010000001-JBQEMN010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Binomica labs, Sung won Lim.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-APR-2025
            Assembly Method        :: Autocycler v. 0.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 353.0x
            Sequencing Technology  :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052043865.1-RS_2025_08_15
            Annotation Date                   :: 08/15/2025 13:05:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,233
            CDSs (total)                      :: 4,175
            Genes (coding)                    :: 4,037
            CDSs (with protein)               :: 4,037
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 45 of 138
            Pseudo Genes (incomplete)         :: 109 of 138
            Pseudo Genes (internal stop)      :: 21 of 138
            Pseudo Genes (multiple problems)  :: 33 of 138
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4246728
                     /organism="Halococcus salifodinae"
                     /mol_type="genomic DNA"
                     /strain="DSM 8989"
                     /isolation_source="Rock salt"
                     /culture_collection="DSM:8989"
                     /type_material="type strain of Halococcus salifodinae"
                     /db_xref="taxon:36738"
                     /geo_loc_name="Austria"
                     /lat_lon="47.5162 N 14.5501 E"
                     /collection_date="1994"
WGS         JBQEMN010000001-JBQEMN010000005
WGS_SCAFLD  NZ_CM125062
WGS_SCAFLD  NZ_JBQEMN010000002-NZ_JBQEMN010000005
//
LOCUS       NZ_JBPPFV010000000   4714258 bp    DNA     linear   BCT 16-AUG-2025
DEFINITION  Natronorubrum sp. DTA7, whole genome shotgun sequencing project.
ACCESSION   NZ_JBPPFV000000000
VERSION     NZ_JBPPFV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49719761
            Assembly: GCF_052040125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum sp. DTA7
  ORGANISM  Natronorubrum sp. DTA7
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4714258)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4714258)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPPFV000000000.1.
            The Natronorubrum sp. DTA7 whole genome shotgun (WGS) project has
            the project accession NZ_JBPPFV000000000.  This version of the
            project (01) has the accession number NZ_JBPPFV010000000, and
            consists of sequences JBPPFV010000001-JBPPFV010000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: de novo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 307.11x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052040125.1-RS_2025_08_15
            Annotation Date                   :: 08/15/2025 12:11:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,663
            CDSs (total)                      :: 4,605
            Genes (coding)                    :: 4,523
            CDSs (with protein)               :: 4,523
            Genes (RNA)                       :: 58
            rRNAs                             :: 4, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 22 of 82
            Pseudo Genes (incomplete)         :: 64 of 82
            Pseudo Genes (internal stop)      :: 21 of 82
            Pseudo Genes (multiple problems)  :: 22 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4714258
                     /organism="Natronorubrum sp. DTA7"
                     /mol_type="genomic DNA"
                     /strain="DTA7"
                     /isolation_source="saline-alkali soil"
                     /db_xref="taxon:3447016"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2018-10"
WGS         JBPPFV010000001-JBPPFV010000009
WGS_SCAFLD  NZ_JBPPFV010000001-NZ_JBPPFV010000009
//
LOCUS       NZ_JBPPFW010000000   4234086 bp    DNA     linear   BCT 16-AUG-2025
DEFINITION  Natronorubrum sp. DTA28, whole genome shotgun sequencing project.
ACCESSION   NZ_JBPPFW000000000
VERSION     NZ_JBPPFW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49719837
            Assembly: GCF_052040145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Natronorubrum sp. DTA28
  ORGANISM  Natronorubrum sp. DTA28
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natrialbaceae; Natronorubrum.
REFERENCE   1  (bases 1 to 4234086)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4234086)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPPFW000000000.1.
            The Natronorubrum sp. DTA28 whole genome shotgun (WGS) project has
            the project accession NZ_JBPPFW000000000.  This version of the
            project (01) has the accession number NZ_JBPPFW010000000, and
            consists of sequences JBPPFW010000001-JBPPFW010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: de novo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 327.07x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052040145.1-RS_2025_08_15
            Annotation Date                   :: 08/15/2025 12:17:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,201
            CDSs (total)                      :: 4,141
            Genes (coding)                    :: 4,095
            CDSs (with protein)               :: 4,095
            Genes (RNA)                       :: 60
            rRNAs                             :: 4, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 16 of 46
            Pseudo Genes (incomplete)         :: 34 of 46
            Pseudo Genes (internal stop)      :: 9 of 46
            Pseudo Genes (multiple problems)  :: 10 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4234086
                     /organism="Natronorubrum sp. DTA28"
                     /mol_type="genomic DNA"
                     /strain="DTA28"
                     /isolation_source="saline-alkali soil"
                     /db_xref="taxon:3447019"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2018-10"
WGS         JBPPFW010000001-JBPPFW010000014
WGS_SCAFLD  NZ_JBPPFW010000001-NZ_JBPPFW010000014
//
LOCUS       NZ_JBPPFR010000000   4370075 bp    DNA     linear   BCT 17-AUG-2025
DEFINITION  Haloarchaeobius baliensis strain 2b_61_3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBPPFR000000000
VERSION     NZ_JBPPFR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49768586
            Assembly: GCF_052060055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarchaeobius baliensis
  ORGANISM  Haloarchaeobius baliensis
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halorubellaceae; Haloarchaeobius.
REFERENCE   1  (bases 1 to 4370075)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4370075)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2025) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPPFR000000000.1.
            The Haloarchaeobius baliensis whole genome shotgun (WGS) project
            has the project accession NZ_JBPPFR000000000.  This version of the
            project (01) has the accession number NZ_JBPPFR010000000, and
            consists of sequences JBPPFR010000001-JBPPFR010000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052060055.1-RS_2025_08_16
            Annotation Date                   :: 08/16/2025 13:01:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,406
            CDSs (total)                      :: 4,350
            Genes (coding)                    :: 4,323
            CDSs (with protein)               :: 4,323
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 1 of 27
            Pseudo Genes (incomplete)         :: 25 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4370075
                     /organism="Haloarchaeobius baliensis"
                     /mol_type="genomic DNA"
                     /strain="2b_61_3"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Haloarchaeobius baliensis"
                     /db_xref="taxon:1670458"
                     /geo_loc_name="Indonesia"
                     /collection_date="2013-09"
WGS         JBPPFR010000001-JBPPFR010000006
WGS_SCAFLD  NZ_JBPPFR010000001-NZ_JBPPFR010000006
//
LOCUS       NZ_QURE01000000      2343467 bp    DNA     linear   BCT 20-AUG-2025
DEFINITION  Nitrososphaera sp. AFS, whole genome shotgun sequencing project.
ACCESSION   NZ_QURE00000000
VERSION     NZ_QURE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09786330
            Assembly: GCF_009898475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrososphaera sp. AFS
  ORGANISM  Nitrososphaera sp. AFS
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae; Nitrososphaera.
REFERENCE   1  (bases 1 to 2343467)
  AUTHORS   Wang,B.
  TITLE     The genomic features of acidophilic Thaumarchaeota
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2343467)
  AUTHORS   Wang,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2018) State Key Laboratory of Soil and
            Sustainable Agriculture, Chinese Academy of Sciences, No. 71.
            Beijing-East Road, Nanjing, Jiangsu 210008, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QURE00000000.1.
            The Nitrososphaera sp. AFS whole genome shotgun (WGS) project has
            the project accession NZ_QURE00000000.  This version of the project
            (01) has the accession number NZ_QURE01000000, and consists of
            sequences QURE01000001-QURE01000154.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from soil.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 20-MAY-2015
            Assembly Method        :: MetaVelvet v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009898475.1-RS_2025_08_18
            Annotation Date                   :: 08/18/2025 21:09:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,447
            CDSs (total)                      :: 2,404
            Genes (coding)                    :: 2,337
            CDSs (with protein)               :: 2,337
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 19 of 67
            Pseudo Genes (incomplete)         :: 49 of 67
            Pseudo Genes (internal stop)      :: 6 of 67
            Pseudo Genes (multiple problems)  :: 5 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343467
                     /organism="Nitrososphaera sp. AFS"
                     /mol_type="genomic DNA"
                     /strain="AFS"
                     /isolation_source="soil"
                     /db_xref="taxon:2301191"
                     /geo_loc_name="China: Jiangxi, Yingtan City"
                     /collection_date="2012-06-01"
WGS         QURE01000001-QURE01000154
WGS_SCAFLD  NZ_QURE01000001-NZ_QURE01000154
//
LOCUS       NZ_JALOBV010000000   2305442 bp    DNA     linear   ENV 20-AUG-2025
DEFINITION  MAG: Methanothrix soehngenii isolate SO_2017_LW3 bin 99, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JALOBV000000000
VERSION     NZ_JALOBV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27301920
            Assembly: GCF_023228095.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanothrix soehngenii (landfill metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2305442)
  AUTHORS   Hug,L.A. and George,N.A.
  TITLE     Virus-host interactions in a municipal landfill include
            non-specific viruses, hyper-targeted viral populations, and
            interviral conflicts
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2305442)
  AUTHORS   Hug,L.A. and George,N.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALOBV000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_JALOBV000000000.  This version of the
            project (01) has the accession number NZ_JALOBV010000000, and
            consists of sequences JALOBV010000001-JALOBV010000310.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAY-2020
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 57.0294x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023228095.1-RS_2025_08_18
            Annotation Date                   :: 08/18/2025 21:56:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,575
            CDSs (total)                      :: 2,532
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 11 of 91
            Pseudo Genes (incomplete)         :: 83 of 91
            Pseudo Genes (internal stop)      :: 2 of 91
            Pseudo Genes (multiple problems)  :: 5 of 91
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305442
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="SO_2017_LW3 bin 99"
                     /isolation_source="leachate from a leachate well at an
                     active municipal landfill in Southern Ontario"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="Canada: Waterloo"
                     /lat_lon="43.44 N 80.58 W"
                     /collection_date="2017-10"
                     /metagenome_source="landfill metagenome"
                     /metagenomic
WGS         JALOBV010000001-JALOBV010000310
WGS_SCAFLD  NZ_JALOBV010000001-NZ_JALOBV010000310
//
LOCUS       NZ_NMUF01000000      2552411 bp    DNA     linear   BCT 20-AUG-2025
DEFINITION  Pyrobaculum aerophilum strain YKB32, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NMUF00000000
VERSION     NZ_NMUF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07344350
            Assembly: GCF_003400145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrobaculum aerophilum
  ORGANISM  Pyrobaculum aerophilum
            Archaea; Thermoproteota; Thermoprotei; Thermoproteales;
            Thermoproteaceae; Pyrobaculum.
REFERENCE   1  (bases 1 to 2552411)
  AUTHORS   Mochizuki,T., Berliner,A.J., Yoshida-Takashima,Y., Takaki,Y.,
            Nunoura,T. and Takai,K.
  TITLE     Draft genome sequence of aerobic hyperthermophilic archaea,
            Pyrobaculum aerophilum YKB31 and YKB32
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2552411)
  AUTHORS   Mochizuki,T., Berliner,A.J., Yoshida-Takashima,Y., Takaki,Y.,
            Nunoura,T. and Takai,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2017) Department of Bioengineering, UC Berkeley,
            2151 Berkeley Way, Berkeley, CA 94704, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NMUF00000000.1.
            The Pyrobaculum aerophilum whole genome shotgun (WGS) project has
            the project accession NZ_NMUF00000000.  This version of the project
            (01) has the accession number NZ_NMUF01000000, and consists of
            sequences NMUF01000001-NMUF01000113.
            Bacteria and source DNA available from Tomohiro Mochizuki.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 06-JUL-2017
            Assembly Method        :: SPAdes v. 2017-07-06
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 80.01x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003400145.1-RS_2025_08_18
            Annotation Date                   :: 08/18/2025 19:47:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,149
            CDSs (total)                      :: 3,096
            Genes (coding)                    :: 2,836
            CDSs (with protein)               :: 2,836
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 260
            CDSs (without protein)            :: 260
            Pseudo Genes (ambiguous residues) :: 0 of 260
            Pseudo Genes (frameshifted)       :: 186 of 260
            Pseudo Genes (incomplete)         :: 87 of 260
            Pseudo Genes (internal stop)      :: 16 of 260
            Pseudo Genes (multiple problems)  :: 27 of 260
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552411
                     /organism="Pyrobaculum aerophilum"
                     /mol_type="genomic DNA"
                     /strain="YKB32"
                     /isolation_source="hot spring"
                     /db_xref="taxon:13773"
                     /geo_loc_name="Japan: Shizuoka"
                     /collection_date="2015"
                     /collected_by="Tomohiro Mochizuki"
                     /identified_by="Tomohiro Mochizuki"
WGS         NMUF01000001-NMUF01000113
WGS_SCAFLD  NZ_NMUF01000001-NZ_NMUF01000113
//
LOCUS       NZ_BGKI01000000      1757809 bp    DNA     linear   BCT 21-AUG-2025
DEFINITION  Nitrosopumilus zosterae strain NBM25, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BGKI00000000
VERSION     NZ_BGKI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00113975
            Assembly: GCF_003175215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitrosopumilus zosterae
  ORGANISM  Nitrosopumilus zosterae
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosopumilus.
REFERENCE   1
  AUTHORS   Nakagawa,T., Koji,M., Hosoyama,A., Yamazoe,A., Tsuchiya,Y.,
            Ueda,S., Takahashi,R. and Stahl,D.A.
  TITLE     Nitrosopumilus zosterae sp. nov., an autotrophic ammonia-oxidizing
            archaeon of phylum Thaumarchaeota isolated from coastal eelgrass
            sediments of Japan
  JOURNAL   Int J Syst Evol Microbiol 71 (8) (2021)
   PUBMED   34406920
  REMARK    DOI:10.1099/ijsem.0.004961
REFERENCE   2
  AUTHORS   Qin,W., Zheng,Y., Zhao,F., Wang,Y., Urakawa,H., Martens-Habbena,W.,
            Liu,H., Huang,X., Zhang,X., Nakagawa,T., Mende,D.R., Bollmann,A.,
            Wang,B., Zhang,Y., Amin,S.A., Nielsen,J.L., Mori,K., Takahashi,R.,
            Virginia Armbrust,E., Winkler,M.H., DeLong,E.F., Li,M., Lee,P.H.,
            Zhou,J., Zhang,C., Zhang,T., Stahl,D.A. and Ingalls,A.E.
  TITLE     Alternative strategies of nutrient acquisition and energy
            conservation map to the biogeography of marine ammonia-oxidizing
            archaea
  JOURNAL   ISME J 14 (10), 2595-2609 (2020)
   PUBMED   32636492
  REMARK    DOI:10.1038/s41396-020-0710-7
REFERENCE   3
  AUTHORS   Mori,K. and Nakagawa,T.
  TITLE     genome sequencing of Nitrosopumilus sp. NM25
  JOURNAL   Unpublished
REFERENCE   4  (bases 1 to 1757809)
  AUTHORS   Mori,K. and Nakagawa,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2018) Contact:Koji Mori NITE, NBRC; 2-5-8
            Kazusakamatari, Kisarazu, Chiba 292-0818, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BGKI00000000.1.
            The Nitrosopumilus zosterae whole genome shotgun (WGS) project has
            the project accession NZ_BGKI00000000.  This version of the project
            (01) has the accession number NZ_BGKI01000000, and consists of
            sequences BGKI01000001-BGKI01000014.
            Annotated at DFAST https://dfast.nig.ac.jp/
            
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 112x
            Sequencing Technology :: Illumina HiSeq 1000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003175215.1-RS_2025_08_19
            Annotation Date                   :: 08/19/2025 10:20:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,141
            CDSs (total)                      :: 2,093
            Genes (coding)                    :: 2,087
            CDSs (with protein)               :: 2,087
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 2 of 6
            Pseudo Genes (incomplete)         :: 4 of 6
            Pseudo Genes (internal stop)      :: 0 of 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757809
                     /organism="Nitrosopumilus zosterae"
                     /mol_type="genomic DNA"
                     /strain="NBM25"
                     /isolation_source="eelgrass sediment"
                     /db_xref="taxon:718286"
                     /geo_loc_name="Japan:Shizuoka, Shimoda"
                     /collection_date="2007-05-17"
WGS         BGKI01000001-BGKI01000014
WGS_SCAFLD  NZ_BGKI01000001-NZ_BGKI01000014
//
LOCUS       NZ_BHWZ01000000      2221322 bp    DNA     linear   BCT 21-AUG-2025
DEFINITION  Sulfolobus acidocaldarius strain DP-5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_BHWZ00000000
VERSION     NZ_BHWZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00143137
            Assembly: GCF_007996945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sulfolobus acidocaldarius
  ORGANISM  Sulfolobus acidocaldarius
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Sulfolobus.
REFERENCE   1
  AUTHORS   Suzuki,S. and Kurosawa,N.
  TITLE     Robust growth of archaeal cells lacking a canonical single-stranded
            DNA-binding protein
  JOURNAL   FEMS Microbiol Lett 366 (10) (2019)
   PUBMED   31168618
  REMARK    DOI:10.1093/femsle/fnz124
REFERENCE   2  (bases 1 to 2221322)
  AUTHORS   Suzuki,S. and Kurosawa,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2018) Contact:Norio Kurosawa Soka University,
            Department of Science and Engineering for Sustainable Development;
            Tangimachi 1-236, Hachioji-shi, Tokyo 192-8577, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            BHWZ00000000.1.
            The Sulfolobus acidocaldarius whole genome shotgun (WGS) project
            has the project accession NZ_BHWZ00000000.  This version of the
            project (01) has the accession number NZ_BHWZ01000000, and consists
            of sequences BHWZ01000001-BHWZ01000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: DNASTAR SeqMan NGen v. 14
            Genome Coverage       :: 324x
            Sequencing Technology :: Illumina Hiseq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007996945.1-RS_2025_08_19
            Annotation Date                   :: 08/19/2025 10:26:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,368
            CDSs (total)                      :: 2,317
            Genes (coding)                    :: 2,286
            CDSs (with protein)               :: 2,286
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 6 of 31
            Pseudo Genes (incomplete)         :: 23 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 3 of 31
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221322
                     /organism="Sulfolobus acidocaldarius"
                     /mol_type="genomic DNA"
                     /strain="DP-5"
                     /db_xref="taxon:2285"
WGS         BHWZ01000001-BHWZ01000006
WGS_SCAFLD  NZ_BHWZ01000001-NZ_BHWZ01000006
//
LOCUS       NZ_JBKQKD010000000   2041705 bp    DNA     linear   ENV 21-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate CRr1A1B1C__bin_126, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQKD000000000
VERSION     NZ_JBKQKD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187392
            Sequence Read Archive: SRR31840467, SRR31840466, SRR31840464
            Assembly: GCF_052147675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2041705)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2041705)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQKD000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQKD000000000.  This version of the project
            (01) has the accession number NZ_JBKQKD010000000, and consists of
            sequences JBKQKD010000001-JBKQKD010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.96x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052147675.1-RS_2025_08_20
            Annotation Date                   :: 08/20/2025 03:15:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,101
            CDSs (total)                      :: 2,045
            Genes (coding)                    :: 2,035
            CDSs (with protein)               :: 2,035
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 0 of 10
            Pseudo Genes (incomplete)         :: 10 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041705
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="CRr1A1B1C__bin_126"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: Scotland"
                     /lat_lon="58.39304 N 4.00182 W"
                     /collection_date="2021-06"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQKD010000001-JBKQKD010000025
WGS_SCAFLD  NZ_JBKQKD010000001-NZ_JBKQKD010000025
//
LOCUS       NZ_JBEDNW010000000   3407404 bp    DNA     linear   BCT 22-AUG-2025
DEFINITION  Halorubrum ejinorense strain DSM 18646, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEDNW000000000
VERSION     NZ_JBEDNW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41557449
            Assembly: GCF_041379805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum ejinorense
  ORGANISM  Halorubrum ejinorense
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3407404)
  AUTHORS   Albuquerque,L., Viver,T., Barroso,C., Claudino,R., Galvan,M.,
            Simoes,G., Lobo Da Cunha,A. and Egas,C.
  TITLE     Halorubrum miltondacostae sp. nov., a potential PHA producer
            isolated from an inland solar saltern in Rio Maior, Portugal
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3407404)
  AUTHORS   Albuquerque,L., Barroso,C. and Egas,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2024) BIOCANT, BIOCANT, Parque Tecnologico de
            Cantanhede, Nucleo 04, Lote 2, Cantanhede 3060-197, Portugal
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEDNW000000000.1.
            The Halorubrum ejinorense whole genome shotgun (WGS) project has
            the project accession NZ_JBEDNW000000000.  This version of the
            project (01) has the accession number NZ_JBEDNW010000000, and
            consists of sequences JBEDNW010000001-JBEDNW010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 134x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041379805.1-RS_2025_08_21
            Annotation Date                   :: 08/21/2025 11:40:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,446
            CDSs (total)                      :: 3,380
            Genes (coding)                    :: 3,325
            CDSs (with protein)               :: 3,325
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 3, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 8 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 14 of 55
            Pseudo Genes (incomplete)         :: 41 of 55
            Pseudo Genes (internal stop)      :: 10 of 55
            Pseudo Genes (multiple problems)  :: 8 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3407404
                     /organism="Halorubrum ejinorense"
                     /mol_type="genomic DNA"
                     /strain="DSM 18646"
                     /isolation_source="saline water [ENVO_00002010]"
                     /culture_collection="DSM:18646"
                     /db_xref="taxon:425309"
                     /geo_loc_name="China: Inner Mongolia, lake Ejinor"
                     /lat_lon="45.23 N 116.53 E"
                     /collection_date="2019-07"
WGS         JBEDNW010000001-JBEDNW010000032
WGS_SCAFLD  NZ_JBEDNW010000001-NZ_JBEDNW010000032
//
LOCUS       NZ_QKKZ01000000      2422009 bp    DNA     linear   BCT 24-AUG-2025
DEFINITION  Halosegnis rubeus strain F18-79, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QKKZ00000000
VERSION     NZ_QKKZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09371719
            Assembly: GCF_009184575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halosegnis rubeus
  ORGANISM  Halosegnis rubeus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Halosegnis.
REFERENCE   1  (bases 1 to 2422009)
  AUTHORS   Duran-Viseras,A., Andrei,A.-S., Vera-Gargallo,B., Ghai,R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Unraveling microbial dark matter from salterns through culturing:
            the case of the genus Halosegnis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2422009)
  AUTHORS   Duran-Viseras,A., Andrei,A.-S., Vera-Gargallo,B., Ghai,R.,
            Sanchez-Porro,C. and Ventosa,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2019) Microbiology and Parasitology, University
            of Sevilla, Spain, Prof Garcia Gonzalez, 2, Sevilla 41012, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QKKZ00000000.1.
            The Halosegnis rubeus whole genome shotgun (WGS) project has the
            project accession NZ_QKKZ00000000.  This version of the project
            (01) has the accession number NZ_QKKZ01000000, and consists of
            sequences QKKZ01000001-QKKZ01000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Dr. Antonio Ventosa.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Idba v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 422.22x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009184575.1-RS_2025_08_24
            Annotation Date                   :: 08/24/2025 06:38:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,682
            CDSs (total)                      :: 2,632
            Genes (coding)                    :: 2,569
            CDSs (with protein)               :: 2,569
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 14 of 63
            Pseudo Genes (incomplete)         :: 49 of 63
            Pseudo Genes (internal stop)      :: 7 of 63
            Pseudo Genes (multiple problems)  :: 7 of 63
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422009
                     /organism="Halosegnis rubeus"
                     /mol_type="genomic DNA"
                     /strain="F18-79"
                     /isolation_source="solar saltern"
                     /db_xref="taxon:2212850"
                     /geo_loc_name="Spain: Isla Bacuta, Huelva"
                     /collection_date="2016-06-29"
WGS         QKKZ01000001-QKKZ01000010
WGS_SCAFLD  NZ_QKKZ01000001-NZ_QKKZ01000010
//
LOCUS       NZ_JAJJZG010000000   3336915 bp    DNA     linear   BCT 26-AUG-2025
DEFINITION  Halobacterium sp. KA-4, whole genome shotgun sequencing project.
ACCESSION   NZ_JAJJZG000000000
VERSION     NZ_JAJJZG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23070839
            Assembly: GCF_021028995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium sp. KA-4
  ORGANISM  Halobacterium sp. KA-4
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 3336915)
  AUTHORS   Megaw,J.
  TITLE     Draft genome sequences of Halobacterium spp. KA-4 and KA-6, two
            extremely halophilic archaea isolated from a Triassic salt deposit
            in Northern Ireland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3336915)
  AUTHORS   Megaw,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2021) School of Biological Sciences, Queen's
            University Belfast, School of Biological Sciences, 19 Chlorine
            Gardens, Belfast, Antrim BT9 5DL, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJJZG000000000.1.
            The Halobacterium sp. KA-4 whole genome shotgun (WGS) project has
            the project accession NZ_JAJJZG000000000.  This version of the
            project (01) has the accession number NZ_JAJJZG010000000, and
            consists of sequences JAJJZG010000001-JAJJZG010000055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Julianne Megaw.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. OCT-2021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 84.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021028995.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 12:36:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,654
            CDSs (total)                      :: 3,602
            Genes (coding)                    :: 3,471
            CDSs (with protein)               :: 3,471
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 35 of 131
            Pseudo Genes (incomplete)         :: 102 of 131
            Pseudo Genes (internal stop)      :: 15 of 131
            Pseudo Genes (multiple problems)  :: 19 of 131
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336915
                     /organism="Halobacterium sp. KA-4"
                     /mol_type="genomic DNA"
                     /strain="KA-4"
                     /isolation_source="Brine from Triassic salt mine"
                     /db_xref="taxon:2896367"
                     /geo_loc_name="United Kingdom: Carrickfergus, Kilroot Salt
                     Mine"
                     /collection_date="2012-04"
WGS         JAJJZG010000001-JAJJZG010000055
WGS_SCAFLD  NZ_JAJJZG010000001-NZ_JAJJZG010000055
//
LOCUS       NZ_JBAHVW010000000   3244950 bp    DNA     linear   BCT 26-AUG-2025
DEFINITION  Haladaptatus sp. CMSO5, whole genome shotgun sequencing project.
ACCESSION   NZ_JBAHVW000000000
VERSION     NZ_JBAHVW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39926785
            Assembly: GCF_036689885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. CMSO5
  ORGANISM  Haladaptatus sp. CMSO5
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 3244950)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3244950)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAHVW000000000.1.
            The Haladaptatus sp. CMSO5 whole genome shotgun (WGS) project has
            the project accession NZ_JBAHVW000000000.  This version of the
            project (01) has the accession number NZ_JBAHVW010000000, and
            consists of sequences JBAHVW010000001-JBAHVW010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 326.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036689885.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 00:56:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,432
            CDSs (total)                      :: 3,380
            Genes (coding)                    :: 3,363
            CDSs (with protein)               :: 3,363
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 15 of 17
            Pseudo Genes (internal stop)      :: 2 of 17
            Pseudo Genes (multiple problems)  :: 4 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3244950
                     /organism="Haladaptatus sp. CMSO5"
                     /mol_type="genomic DNA"
                     /strain="CMSO5"
                     /isolation_source="Chongming Island"
                     /db_xref="taxon:3120514"
                     /geo_loc_name="China: Shanghai"
                     /collection_date="2021-07"
WGS         JBAHVW010000001-JBAHVW010000003
WGS_SCAFLD  NZ_JBAHVW010000001-NZ_JBAHVW010000003
//
LOCUS       NZ_JAYMGY010000000   4146258 bp    DNA     linear   BCT 26-AUG-2025
DEFINITION  Haloarcula sp. CGMCC 1.2071, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAYMGY000000000
VERSION     NZ_JAYMGY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39222439
            Assembly: GCF_037078445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. CGMCC 1.2071
  ORGANISM  Haloarcula sp. CGMCC 1.2071
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 4146258)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4146258)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYMGY000000000.1.
            The Haloarcula sp. CGMCC 1.2071 whole genome shotgun (WGS) project
            has the project accession NZ_JAYMGY000000000.  This version of the
            project (01) has the accession number NZ_JAYMGY010000000, and
            consists of sequences JAYMGY010000001-JAYMGY010000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 324.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037078445.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 03:49:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,263
            CDSs (total)                      :: 4,181
            Genes (coding)                    :: 4,087
            CDSs (with protein)               :: 4,087
            Genes (RNA)                       :: 82
            rRNAs                             :: 6, 6, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 1, 6, 5 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 25 of 94
            Pseudo Genes (incomplete)         :: 68 of 94
            Pseudo Genes (internal stop)      :: 24 of 94
            Pseudo Genes (multiple problems)  :: 20 of 94
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4146258
                     /organism="Haloarcula sp. CGMCC 1.2071"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.2071"
                     /isolation_source="inland salt lake"
                     /db_xref="taxon:3111454"
                     /geo_loc_name="China: Qinghai"
                     /collection_date="1984-10"
WGS         JAYMGY010000001-JAYMGY010000065
WGS_SCAFLD  NZ_JAYMGY010000001-NZ_JAYMGY010000065
//
LOCUS       NZ_JBAMHQ010000000   3230757 bp    DNA     linear   BCT 26-AUG-2025
DEFINITION  Haladaptatus sp. ZSTT2, whole genome shotgun sequencing project.
ACCESSION   NZ_JBAMHQ000000000
VERSION     NZ_JBAMHQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39926794
            Assembly: GCF_037081775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haladaptatus sp. ZSTT2
  ORGANISM  Haladaptatus sp. ZSTT2
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
REFERENCE   1  (bases 1 to 3230757)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3230757)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAMHQ000000000.1.
            The Haladaptatus sp. ZSTT2 whole genome shotgun (WGS) project has
            the project accession NZ_JBAMHQ000000000.  This version of the
            project (01) has the accession number NZ_JBAMHQ010000000, and
            consists of sequences JBAMHQ010000001-JBAMHQ010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 305.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037081775.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 03:48:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,432
            CDSs (total)                      :: 3,380
            Genes (coding)                    :: 3,358
            CDSs (with protein)               :: 3,358
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 4 of 22
            Pseudo Genes (multiple problems)  :: 4 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3230757
                     /organism="Haladaptatus sp. ZSTT2"
                     /mol_type="genomic DNA"
                     /strain="ZSTT2"
                     /isolation_source="sediment"
                     /db_xref="taxon:3120515"
                     /geo_loc_name="China: Zhejiang"
                     /collection_date="2022-07"
WGS         JBAMHQ010000001-JBAMHQ010000004
WGS_SCAFLD  NZ_JBAMHQ010000001-NZ_JBAMHQ010000004
//
LOCUS       NZ_JAYMGX010000000   3852736 bp    DNA     linear   BCT 26-AUG-2025
DEFINITION  Haloarcula sp. CGMCC 1.6347, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAYMGX000000000
VERSION     NZ_JAYMGX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39222711
            Assembly: GCF_037078395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Haloarcula sp. CGMCC 1.6347
  ORGANISM  Haloarcula sp. CGMCC 1.6347
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
REFERENCE   1  (bases 1 to 3852736)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3852736)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2024) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYMGX000000000.1.
            The Haloarcula sp. CGMCC 1.6347 whole genome shotgun (WGS) project
            has the project accession NZ_JAYMGX000000000.  This version of the
            project (01) has the accession number NZ_JAYMGX010000000, and
            consists of sequences JAYMGX010000001-JAYMGX010000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037078395.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 03:50:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,971
            CDSs (total)                      :: 3,910
            Genes (coding)                    :: 3,862
            CDSs (with protein)               :: 3,862
            Genes (RNA)                       :: 61
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 12 of 48
            Pseudo Genes (incomplete)         :: 35 of 48
            Pseudo Genes (internal stop)      :: 16 of 48
            Pseudo Genes (multiple problems)  :: 13 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3852736
                     /organism="Haloarcula sp. CGMCC 1.6347"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.6347"
                     /isolation_source="inland salt lake"
                     /db_xref="taxon:3111455"
                     /geo_loc_name="China: Tibet"
                     /collection_date="1999-10"
WGS         JAYMGX010000001-JAYMGX010000012
WGS_SCAFLD  NZ_JAYMGX010000001-NZ_JAYMGX010000012
//
LOCUS       NZ_JAJJZH010000000   3492034 bp    DNA     linear   BCT 26-AUG-2025
DEFINITION  Halobacterium sp. KA-6, whole genome shotgun sequencing project.
ACCESSION   NZ_JAJJZH000000000
VERSION     NZ_JAJJZH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23070840
            Assembly: GCF_021029015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium sp. KA-6
  ORGANISM  Halobacterium sp. KA-6
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 3492034)
  AUTHORS   Megaw,J.
  TITLE     Draft genome sequences of Halobacterium spp. KA-4 and KA-6, two
            extremely halophilic archaea isolated from a Triassic salt deposit
            in Northern Ireland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3492034)
  AUTHORS   Megaw,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2021) School of Biological Sciences, Queen's
            University Belfast, School of Biological Sciences, 19 Chlorine
            Gardens, Belfast, Antrim BT9 5DL, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJJZH000000000.1.
            The Halobacterium sp. KA-6 whole genome shotgun (WGS) project has
            the project accession NZ_JAJJZH000000000.  This version of the
            project (01) has the accession number NZ_JAJJZH010000000, and
            consists of sequences JAJJZH010000001-JAJJZH010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Julianne Megaw.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. OCT-2021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 73.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021029015.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 12:42:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,798
            CDSs (total)                      :: 3,747
            Genes (coding)                    :: 3,579
            CDSs (with protein)               :: 3,579
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 168
            CDSs (without protein)            :: 168
            Pseudo Genes (ambiguous residues) :: 0 of 168
            Pseudo Genes (frameshifted)       :: 77 of 168
            Pseudo Genes (incomplete)         :: 107 of 168
            Pseudo Genes (internal stop)      :: 38 of 168
            Pseudo Genes (multiple problems)  :: 48 of 168
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3492034
                     /organism="Halobacterium sp. KA-6"
                     /mol_type="genomic DNA"
                     /strain="KA-6"
                     /isolation_source="Brine from Triassic salt mine"
                     /db_xref="taxon:2896368"
                     /geo_loc_name="United Kingdom: Carrickfergus, Kilroot Salt
                     Mine"
                     /collection_date="2012-04"
WGS         JAJJZH010000001-JAJJZH010000046
WGS_SCAFLD  NZ_JAJJZH010000001-NZ_JAJJZH010000046
//
LOCUS       NZ_JAJQQZ010000000   3065736 bp    DNA     linear   BCT 26-AUG-2025
DEFINITION  Halobacterium sp. TGN-42-S1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAJQQZ000000000
VERSION     NZ_JAJQQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23798340
            Assembly: GCF_021729015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobacterium sp. TGN-42-S1
  ORGANISM  Halobacterium sp. TGN-42-S1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
REFERENCE   1  (bases 1 to 3065736)
  AUTHORS   Cui,H.-L.
  TITLE     Halobacterium rubrum sp. nov., isolated from a marine solar saltern
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3065736)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2021) School of Food and Biological Engineering,
            Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang,
            Jiangsu 212013, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJQQZ000000000.1.
            The Halobacterium sp. TGN-42-S1 whole genome shotgun (WGS) project
            has the project accession NZ_JAJQQZ000000000.  This version of the
            project (01) has the accession number NZ_JAJQQZ010000000, and
            consists of sequences JAJQQZ010000001-JAJQQZ010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021729015.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 14:43:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,282
            CDSs (total)                      :: 3,224
            Genes (coding)                    :: 3,199
            CDSs (with protein)               :: 3,199
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 5 of 25
            Pseudo Genes (incomplete)         :: 20 of 25
            Pseudo Genes (internal stop)      :: 5 of 25
            Pseudo Genes (multiple problems)  :: 4 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065736
                     /organism="Halobacterium sp. TGN-42-S1"
                     /mol_type="genomic DNA"
                     /strain="TGN-42-S1"
                     /isolation_source="sediment"
                     /db_xref="taxon:2902625"
                     /geo_loc_name="China: Tianjin"
                     /collection_date="2012"
WGS         JAJQQZ010000001-JAJQQZ010000007
WGS_SCAFLD  NZ_JAJQQZ010000001-NZ_JAJQQZ010000007
//
LOCUS       NZ_JAZKTB010000000   2025344 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Halodesulfurarchaeum sp. isolate NA-5cm_bin.18, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZKTB000000000
VERSION     NZ_JAZKTB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38146023
            Assembly: GCF_036625805.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halodesulfurarchaeum sp. (hypersaline lake metagenome)
  ORGANISM  Halodesulfurarchaeum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae;
            Halodesulfurarchaeum.
REFERENCE   1  (bases 1 to 2025344)
  AUTHORS   Maritan,A., Shoemaker,A., Cosar,S., Nupp,S., Menchaca,A.,
            Jackson,T., Dang,A., Baxter,B., Dunham,E., Colman,D.R. and
            Boyd,E.S.
  TITLE     Metagenomic analysis of Great Salt Lake North Arm Sediment Core
            Microbial Communities
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2025344)
  AUTHORS   Colman,D.R., Boyd,E.S. and Dunham,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZKTB000000000.1.
            The Halodesulfurarchaeum sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZKTB000000000.  This version of the
            project (01) has the accession number NZ_JAZKTB010000000, and
            consists of sequences JAZKTB010000001-JAZKTB010000053.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34.26x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036625805.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 23:37:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,126
            CDSs (total)                      :: 2,078
            Genes (coding)                    :: 2,048
            CDSs (with protein)               :: 2,048
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 6 of 30
            Pseudo Genes (incomplete)         :: 24 of 30
            Pseudo Genes (internal stop)      :: 7 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025344
                     /organism="Halodesulfurarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="NA-5cm_bin.18"
                     /isolation_source="sediments"
                     /db_xref="taxon:1980530"
                     /environmental_sample
                     /geo_loc_name="USA: Great Salt Lake"
                     /lat_lon="41.43783 N 112.67103 W"
                     /collection_date="2016"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JAZKTB010000001-JAZKTB010000053
WGS_SCAFLD  NZ_JAZKTB010000001-NZ_JAZKTB010000053
//
LOCUS       NZ_JAZKRK010000000   2200385 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Halodesulfurarchaeum sp. isolate NA-0cm_bin.11, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAZKRK000000000
VERSION     NZ_JAZKRK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38145980
            Assembly: GCF_036626455.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Halodesulfurarchaeum sp. (hypersaline lake metagenome)
  ORGANISM  Halodesulfurarchaeum sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae;
            Halodesulfurarchaeum.
REFERENCE   1  (bases 1 to 2200385)
  AUTHORS   Maritan,A., Shoemaker,A., Cosar,S., Nupp,S., Menchaca,A.,
            Jackson,T., Dang,A., Baxter,B., Dunham,E., Colman,D.R. and
            Boyd,E.S.
  TITLE     Metagenomic analysis of Great Salt Lake North Arm Sediment Core
            Microbial Communities
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2200385)
  AUTHORS   Colman,D.R., Boyd,E.S. and Dunham,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZKRK000000000.1.
            The Halodesulfurarchaeum sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAZKRK000000000.  This version of the
            project (01) has the accession number NZ_JAZKRK010000000, and
            consists of sequences JAZKRK010000001-JAZKRK010000077.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 32.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036626455.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 23:39:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,286
            CDSs (total)                      :: 2,241
            Genes (coding)                    :: 2,209
            CDSs (with protein)               :: 2,209
            Genes (RNA)                       :: 45
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 5 of 32
            Pseudo Genes (incomplete)         :: 28 of 32
            Pseudo Genes (internal stop)      :: 7 of 32
            Pseudo Genes (multiple problems)  :: 6 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200385
                     /organism="Halodesulfurarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="NA-0cm_bin.11"
                     /isolation_source="sediments"
                     /db_xref="taxon:1980530"
                     /environmental_sample
                     /geo_loc_name="USA: Great Salt Lake"
                     /lat_lon="41.43783 N 112.67103 W"
                     /collection_date="2016"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JAZKRK010000001-JAZKRK010000077
WGS_SCAFLD  NZ_JAZKRK010000001-NZ_JAZKRK010000077
//
LOCUS       NZ_JBAOJI010000000   3736041 bp    DNA     linear   BCT 26-AUG-2025
DEFINITION  Halovenus sp. HT40, whole genome shotgun sequencing project.
ACCESSION   NZ_JBAOJI000000000
VERSION     NZ_JBAOJI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40196327
            Assembly: GCF_037080055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halovenus sp. HT40
  ORGANISM  Halovenus sp. HT40
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
REFERENCE   1  (bases 1 to 3736041)
  AUTHORS   Chen,S.
  TITLE     An extremely halophilic archaeon isolated from a salted mine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3736041)
  AUTHORS   Chen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2024) College of Life Sciences, Anhui Normal
            University, Beijing East Road, Wuhu, Anhui 241000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAOJI000000000.1.
            The Halovenus sp. HT40 whole genome shotgun (WGS) project has the
            project accession NZ_JBAOJI000000000.  This version of the project
            (01) has the accession number NZ_JBAOJI010000000, and consists of
            sequences JBAOJI010000001-JBAOJI010000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037080055.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 03:50:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,799
            CDSs (total)                      :: 3,743
            Genes (coding)                    :: 3,686
            CDSs (with protein)               :: 3,686
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 16 of 57
            Pseudo Genes (incomplete)         :: 48 of 57
            Pseudo Genes (internal stop)      :: 12 of 57
            Pseudo Genes (multiple problems)  :: 14 of 57
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3736041
                     /organism="Halovenus sp. HT40"
                     /mol_type="genomic DNA"
                     /strain="HT40"
                     /isolation_source="salt mine"
                     /db_xref="taxon:3126691"
                     /geo_loc_name="China: Anhui"
                     /collection_date="2021-09-10"
                     /collected_by="Shaoxing Chen"
WGS         JBAOJI010000001-JBAOJI010000023
WGS_SCAFLD  NZ_JBAOJI010000001-NZ_JBAOJI010000023
//
LOCUS       NZ_DAOURT010000000   2401699 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanoculleus sp. isolate CSMAG_527, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAOURT000000000
VERSION     NZ_DAOURT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34043794
            Sequence Read Archive: SRR1971620
            Assembly: GCF_030627555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanoculleus sp. (cold seep metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2401699)
  AUTHORS   Han,Y., Zhang,C., Zhao,Z., Peng,Y., Liao,J., Jiang,Q., Liu,Q.,
            Shao,Z. and Dong,X.
  TITLE     A comprehensive genomic catalog from global cold seeps
  JOURNAL   Sci Data 10 (1), 596 (2023)
   PUBMED   37684262
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401699)
  AUTHORS   Han,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2023) Key Laboratory of Marine Genetic Resources,
            Third Institute of Oceanography, Ministry of Natural Resources, No.
            178 Daxue Road, Xiamen, Fujian 361005, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAOURT000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_DAOURT000000000.  This version of the project
            (01) has the accession number NZ_DAOURT010000000, and consists of
            sequences DAOURT010000001-DAOURT010000115.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.1.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 3x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030627555.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 19:09:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,537
            CDSs (total)                      :: 2,486
            Genes (coding)                    :: 2,449
            CDSs (with protein)               :: 2,449
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 2 of 37
            Pseudo Genes (incomplete)         :: 33 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401699
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="CSMAG_527"
                     /isolation_source="cold seep"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /metagenome_source="cold seep metagenome"
                     /metagenomic
WGS         DAOURT010000001-DAOURT010000115
WGS_SCAFLD  NZ_DAOURT010000001-NZ_DAOURT010000115
//
LOCUS       NZ_JAXJTK010000000   1764037 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanosphaera sp. isolate DOME_MAG_3464, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXJTK000000000
VERSION     NZ_JAXJTK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38021597
            Assembly: GCF_036309625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanosphaera sp. (gut metagenome)
  ORGANISM  Methanosphaera sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanosphaera.
REFERENCE   1  (bases 1 to 1764037)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Interconnectedness of farmer and livestock microbiomes and
            resistomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1764037)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2023) The Edison Family Center for Genome
            Sciences & Systems Biology, Washington University School of
            Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXJTK000000000.1.
            The Methanosphaera sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAXJTK000000000.  This version of the project
            (01) has the accession number NZ_JAXJTK010000000, and consists of
            sequences JAXJTK010000001-JAXJTK010000227.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036309625.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 22:54:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,721
            CDSs (total)                      :: 1,692
            Genes (coding)                    :: 1,650
            CDSs (with protein)               :: 1,650
            Genes (RNA)                       :: 29
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 2 of 42
            Pseudo Genes (incomplete)         :: 39 of 42
            Pseudo Genes (internal stop)      :: 2 of 42
            Pseudo Genes (multiple problems)  :: 1 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764037
                     /organism="Methanosphaera sp."
                     /mol_type="genomic DNA"
                     /isolate="DOME_MAG_3464"
                     /isolation_source="stool"
                     /host="Bos taurus"
                     /db_xref="taxon:2666342"
                     /environmental_sample
                     /geo_loc_name="USA: Marshfield, WI"
                     /lat_lon="44.69 N 90.17 W"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAXJTK010000001-JAXJTK010000227
WGS_SCAFLD  NZ_JAXJTK010000001-NZ_JAXJTK010000227
//
LOCUS       NZ_JAVBWL010000000   2517679 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanoculleus sp. isolate ZNE14_Bin75, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAVBWL000000000
VERSION     NZ_JAVBWL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34210196
            Assembly: GCF_036677455.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoculleus sp. (sediment metagenome)
  ORGANISM  Methanoculleus sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae;
            Methanoculleus.
REFERENCE   1  (bases 1 to 2517679)
  AUTHORS   Yang,S.
  TITLE     Multiple Biotransformation Pathways of Tris(2-chloroethyl)
            Phosphate at a Vehicle Dismantling Site
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2517679)
  AUTHORS   Yang,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2023) Guangzhou Institute of Geochemistry,
            Chinese Academy of Sciences, KeHua, Guangzhou 510630, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVBWL000000000.1.
            The Methanoculleus sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVBWL000000000.  This version of the project
            (01) has the accession number NZ_JAVBWL010000000, and consists of
            sequences JAVBWL010000001-JAVBWL010000052.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 20-JUN-2021
            Assembly Method        :: MetaBAT2 v. v2.15
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 42x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036677455.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 00:48:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,570
            CDSs (total)                      :: 2,515
            Genes (coding)                    :: 2,493
            CDSs (with protein)               :: 2,493
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 0 of 22
            Pseudo Genes (incomplete)         :: 22 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517679
                     /organism="Methanoculleus sp."
                     /mol_type="genomic DNA"
                     /isolate="ZNE14_Bin75"
                     /isolation_source="sediment in ELVs dismantling site;
                     transfer 14.0 in DhZhu medium with mix-carbon source"
                     /db_xref="taxon:90427"
                     /environmental_sample
                     /geo_loc_name="China: Guangzhou"
                     /lat_lon="23.33402340 N 113.36275359 E"
                     /collection_date="2021-02-20"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JAVBWL010000001-JAVBWL010000052
WGS_SCAFLD  NZ_JAVBWL010000001-NZ_JAVBWL010000052
//
LOCUS       NZ_DAIRVT010000000   2200589 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanomethylovorans sp. isolate CTOTU29525, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIRVT000000000
VERSION     NZ_DAIRVT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28749818
            Sequence Read Archive: SRR6007444
            Assembly: GCF_036802725.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanomethylovorans sp. (sludge metagenome)
  ORGANISM  Methanomethylovorans sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanomethylovorans.
REFERENCE   1  (bases 1 to 2200589)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2200589)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIRVT000000000.1.
            The Methanomethylovorans sp. whole genome shotgun (WGS) project has
            the project accession NZ_DAIRVT000000000.  This version of the
            project (01) has the accession number NZ_DAIRVT010000000, and
            consists of sequences DAIRVT010000001-DAIRVT010000107.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036802725.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 02:30:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,212
            CDSs (total)                      :: 2,170
            Genes (coding)                    :: 2,137
            CDSs (with protein)               :: 2,137
            Genes (RNA)                       :: 42
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 0 of 33
            Pseudo Genes (incomplete)         :: 32 of 33
            Pseudo Genes (internal stop)      :: 1 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200589
                     /organism="Methanomethylovorans sp."
                     /mol_type="genomic DNA"
                     /isolate="CTOTU29525"
                     /isolation_source="sludge"
                     /db_xref="taxon:2758717"
                     /environmental_sample
                     /collection_date="2016-09-01"
                     /metagenome_source="sludge metagenome"
                     /metagenomic
WGS         DAIRVT010000001-DAIRVT010000107
WGS_SCAFLD  NZ_DAIRVT010000001-NZ_DAIRVT010000107
//
LOCUS       NZ_DAISQZ010000000   2371446 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanothrix soehngenii isolate CTOTU40276, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAISQZ000000000
VERSION     NZ_DAISQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28750528
            Sequence Read Archive: SRR1561998
            Assembly: GCF_036829155.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (soil metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2371446)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2371446)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAISQZ000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAISQZ000000000.  This version of the
            project (01) has the accession number NZ_DAISQZ010000000, and
            consists of sequences DAISQZ010000001-DAISQZ010000130.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036829155.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 02:38:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,640
            CDSs (total)                      :: 2,594
            Genes (coding)                    :: 2,507
            CDSs (with protein)               :: 2,507
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 20 of 87
            Pseudo Genes (incomplete)         :: 73 of 87
            Pseudo Genes (internal stop)      :: 1 of 87
            Pseudo Genes (multiple problems)  :: 7 of 87
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371446
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU40276"
                     /isolation_source="soil"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="China"
                     /collection_date="2013-04-21"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         DAISQZ010000001-DAISQZ010000130
WGS_SCAFLD  NZ_DAISQZ010000001-NZ_DAISQZ010000130
//
LOCUS       NZ_JAEDCO010000000   1835542 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanobrevibacter ruminantium isolate MAG008, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAEDCO000000000
VERSION     NZ_JAEDCO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16927155
            Assembly: GCF_016294135.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (gut metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1835542)
  AUTHORS   Zhou,S., Luo,R., Gong,G., Wang,Y., Gesang,Z., Wang,K., Xu,Z. and
            Suolang,S.
  TITLE     Characterization of metagenome-assembled genomes and
            carbohydrate-degrading genes in the gut microbiota of Tibetan pig
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1835542)
  AUTHORS   Suolang,S. and Zhou,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2020) Department of Animal Science, Tibet
            Agricultural and Animal Husbandry College, No. 100, Yucai West
            Road, Bayi District, Linzhi, Tibet 860000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEDCO000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_JAEDCO000000000.  This version
            of the project (01) has the accession number NZ_JAEDCO010000000,
            and consists of sequences JAEDCO010000001-JAEDCO010000081.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: metaSPAdes v. 3.13.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.14x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016294135.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 11:46:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,778
            CDSs (total)                      :: 1,744
            Genes (coding)                    :: 1,726
            CDSs (with protein)               :: 1,726
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 8 of 18
            Pseudo Genes (incomplete)         :: 9 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            Pseudo Genes (multiple problems)  :: 1 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835542
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="MAG008"
                     /isolation_source="fresh feces"
                     /host="tibetan pig"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /geo_loc_name="China: Xizang"
                     /collection_date="2019"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAEDCO010000001-JAEDCO010000081
WGS_SCAFLD  NZ_JAEDCO010000001-NZ_JAEDCO010000081
//
LOCUS       NZ_DAIPSW010000000   2119321 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanothrix soehngenii isolate CTOTU40364, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAIPSW000000000
VERSION     NZ_DAIPSW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28748265
            Sequence Read Archive: SRR1561999
            Assembly: GCF_036778355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanothrix soehngenii (soil metagenome)
  ORGANISM  Methanothrix soehngenii
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanotrichales; Methanotrichaceae; Methanothrix.
REFERENCE   1  (bases 1 to 2119321)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2119321)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIPSW000000000.1.
            The Methanothrix soehngenii whole genome shotgun (WGS) project has
            the project accession NZ_DAIPSW000000000.  This version of the
            project (01) has the accession number NZ_DAIPSW010000000, and
            consists of sequences DAIPSW010000001-DAIPSW010000141.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036778355.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 02:53:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,277
            CDSs (total)                      :: 2,234
            Genes (coding)                    :: 2,190
            CDSs (with protein)               :: 2,190
            Genes (RNA)                       :: 43
            tRNAs                             :: 41
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 4 of 44
            Pseudo Genes (incomplete)         :: 41 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 3 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119321
                     /organism="Methanothrix soehngenii"
                     /mol_type="genomic DNA"
                     /isolate="CTOTU40364"
                     /isolation_source="soil"
                     /db_xref="taxon:2223"
                     /environmental_sample
                     /geo_loc_name="China"
                     /collection_date="2013-04-21"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         DAIPSW010000001-DAIPSW010000141
WGS_SCAFLD  NZ_DAIPSW010000001-NZ_DAIPSW010000141
//
LOCUS       NZ_JALEMW010000000   1909620 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanobrevibacter ruminantium isolate SUG149, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JALEMW000000000
VERSION     NZ_JALEMW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26525373
            Assembly: GCF_022768105.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter ruminantium (pig gut metagenome)
  ORGANISM  Methanobrevibacter ruminantium
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1909620)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Metagenome-assembled genomes from swine fecal metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1909620)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2022) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALEMW000000000.1.
            The Methanobrevibacter ruminantium whole genome shotgun (WGS)
            project has the project accession NZ_JALEMW000000000.  This version
            of the project (01) has the accession number NZ_JALEMW010000000,
            and consists of sequences JALEMW010000001-JALEMW010000031.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2021
            Assembly Method        :: MEGAHIT v. v. 1.29.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28.8x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022768105.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 14:46:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,851
            CDSs (total)                      :: 1,813
            Genes (coding)                    :: 1,796
            CDSs (with protein)               :: 1,796
            Genes (RNA)                       :: 38
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 10 of 17
            Pseudo Genes (internal stop)      :: 2 of 17
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909620
                     /organism="Methanobrevibacter ruminantium"
                     /mol_type="genomic DNA"
                     /isolate="SUG149"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:83816"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2019"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JALEMW010000001-JALEMW010000031
WGS_SCAFLD  NZ_JALEMW010000001-NZ_JALEMW010000031
//
LOCUS       NZ_JAUVEY010000000   2125109 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanococcoides sp. isolate CSMAG_335, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAUVEY000000000
VERSION     NZ_JAUVEY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34043602
            Assembly: GCF_030594565.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanococcoides sp. (cold seep metagenome)
  ORGANISM  Methanococcoides sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
            Methanococcoides.
REFERENCE   1  (bases 1 to 2125109)
  AUTHORS   Han,Y., Zhang,C., Zhao,Z., Peng,Y., Liao,J., Jiang,Q., Liu,Q.,
            Shao,Z. and Dong,X.
  TITLE     A comprehensive genomic catalog from global cold seeps
  JOURNAL   Sci Data 10 (1), 596 (2023)
   PUBMED   37684262
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125109)
  AUTHORS   Han,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2023) Key Laboratory of Marine Genetic Resources,
            Third Institute of Oceanography, Ministry of Natural Resources, No.
            178 Daxue Road, Xiamen, Fujian 361005, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAUVEY000000000.1.
            The Methanococcoides sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAUVEY000000000.  This version of the project
            (01) has the accession number NZ_JAUVEY010000000, and consists of
            sequences JAUVEY010000001-JAUVEY010000204.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.1.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 7x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030594565.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 19:11:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,313
            CDSs (total)                      :: 2,274
            Genes (coding)                    :: 2,179
            CDSs (with protein)               :: 2,179
            Genes (RNA)                       :: 39
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 13 of 95
            Pseudo Genes (incomplete)         :: 77 of 95
            Pseudo Genes (internal stop)      :: 22 of 95
            Pseudo Genes (multiple problems)  :: 14 of 95
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125109
                     /organism="Methanococcoides sp."
                     /mol_type="genomic DNA"
                     /isolate="CSMAG_335"
                     /isolation_source="cold seep"
                     /db_xref="taxon:1966350"
                     /environmental_sample
                     /metagenome_source="cold seep metagenome"
                     /metagenomic
WGS         JAUVEY010000001-JAUVEY010000204
WGS_SCAFLD  NZ_JAUVEY010000001-NZ_JAUVEY010000204
//
LOCUS       NZ_JAXJXG010000000   2349570 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate DOME_MAG_650, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXJXG000000000
VERSION     NZ_JAXJXG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38021697
            Assembly: GCF_036307705.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2349570)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Interconnectedness of farmer and livestock microbiomes and
            resistomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2349570)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2023) The Edison Family Center for Genome
            Sciences & Systems Biology, Washington University School of
            Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXJXG000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAXJXG000000000.  This version of the
            project (01) has the accession number NZ_JAXJXG010000000, and
            consists of sequences JAXJXG010000001-JAXJXG010000150.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036307705.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 22:52:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,424
            CDSs (total)                      :: 2,380
            Genes (coding)                    :: 2,346
            CDSs (with protein)               :: 2,346
            Genes (RNA)                       :: 44
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 39
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 2 of 34
            Pseudo Genes (incomplete)         :: 31 of 34
            Pseudo Genes (internal stop)      :: 1 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349570
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="DOME_MAG_650"
                     /isolation_source="stool"
                     /host="Bos taurus"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="USA: Marshfield, WI"
                     /lat_lon="44.69 N 90.17 W"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAXJXG010000001-JAXJXG010000150
WGS_SCAFLD  NZ_JAXJXG010000001-NZ_JAXJXG010000150
//
LOCUS       NZ_JAXJPP010000000   2614452 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate DOME_MAG_181, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXJPP000000000
VERSION     NZ_JAXJPP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38021498
            Assembly: GCF_036311585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2614452)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Interconnectedness of farmer and livestock microbiomes and
            resistomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2614452)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2023) The Edison Family Center for Genome
            Sciences & Systems Biology, Washington University School of
            Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXJPP000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAXJPP000000000.  This version of the
            project (01) has the accession number NZ_JAXJPP010000000, and
            consists of sequences JAXJPP010000001-JAXJPP010000256.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036311585.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 22:55:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,504
            CDSs (total)                      :: 2,458
            Genes (coding)                    :: 2,400
            CDSs (with protein)               :: 2,400
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 2 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 5 of 58
            Pseudo Genes (incomplete)         :: 52 of 58
            Pseudo Genes (internal stop)      :: 1 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614452
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="DOME_MAG_181"
                     /isolation_source="stool"
                     /host="Bos taurus"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="USA: Marshfield, WI"
                     /lat_lon="44.69 N 90.17 W"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAXJPP010000001-JAXJPP010000256
WGS_SCAFLD  NZ_JAXJPP010000001-NZ_JAXJPP010000256
//
LOCUS       NZ_JAXJHX010000000   2193497 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate DOME_MAG_1260, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAXJHX000000000
VERSION     NZ_JAXJHX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38021298
            Assembly: GCF_036299025.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobrevibacter sp. (gut metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2193497)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Interconnectedness of farmer and livestock microbiomes and
            resistomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2193497)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2023) The Edison Family Center for Genome
            Sciences & Systems Biology, Washington University School of
            Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXJHX000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_JAXJHX000000000.  This version of the
            project (01) has the accession number NZ_JAXJHX010000000, and
            consists of sequences JAXJHX010000001-JAXJHX010000110.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036299025.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 22:56:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,014
            CDSs (total)                      :: 1,977
            Genes (coding)                    :: 1,949
            CDSs (with protein)               :: 1,949
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 3 of 28
            Pseudo Genes (incomplete)         :: 26 of 28
            Pseudo Genes (internal stop)      :: 3 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193497
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="DOME_MAG_1260"
                     /isolation_source="stool"
                     /host="Bos taurus"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="USA: Marshfield, WI"
                     /lat_lon="44.69 N 90.17 W"
                     /metagenome_source="gut metagenome"
                     /metagenomic
WGS         JAXJHX010000001-JAXJHX010000110
WGS_SCAFLD  NZ_JAXJHX010000001-NZ_JAXJHX010000110
//
LOCUS       NZ_DAIOUE010000000   2343949 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Methanobrevibacter sp. isolate CTOTU7683, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DAIOUE000000000
VERSION     NZ_DAIOUE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28747674
            Sequence Read Archive: SRR3330207, SRR3330208, SRR3330209
            Assembly: GCF_036751625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter sp. (sludge metagenome)
  ORGANISM  Methanobrevibacter sp.
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 2343949)
  AUTHORS   Rocha,U., Coelho Kasmanas,J., Kallies,R., Saraiva,J.P.,
            Toscan,R.B., Stefanic,P., Bicalho,M.F., Borim Correa,F.,
            Basturk,M.N., Fousekis,E., Viana Barbosa,L.M., Plewka,J.,
            Probst,A.J., Baldrian,P. and Stadler,P.F.
  CONSRTM   CLUE-TERRA Consortium
  TITLE     MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy
  JOURNAL   Mol Ecol Resour 24 (2), e13904 (2024)
   PUBMED   37994269
REFERENCE   2  (bases 1 to 2343949)
  AUTHORS   Saraiva,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2022) Environmental Microbiology, Helmholtz
            Centre for Environmental Research - UFZ, Permosersstr. 15, Leipzig
            04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAIOUE000000000.1.
            The Methanobrevibacter sp. whole genome shotgun (WGS) project has
            the project accession NZ_DAIOUE000000000.  This version of the
            project (01) has the accession number NZ_DAIOUE010000000, and
            consists of sequences DAIOUE010000001-DAIOUE010000020.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036751625.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 02:11:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,962
            CDSs (total)                      :: 1,925
            Genes (coding)                    :: 1,912
            CDSs (with protein)               :: 1,912
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 2 of 13
            Pseudo Genes (incomplete)         :: 11 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343949
                     /organism="Methanobrevibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="CTOTU7683"
                     /isolation_source="sludge"
                     /db_xref="taxon:66852"
                     /environmental_sample
                     /geo_loc_name="Singapore"
                     /collection_date="2014-10-22"
                     /metagenome_source="sludge metagenome"
                     /metagenomic
WGS         DAIOUE010000001-DAIOUE010000020
WGS_SCAFLD  NZ_DAIOUE010000001-NZ_DAIOUE010000020
//
LOCUS       NZ_JAZKRO010000000   2776291 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Natronomonas sp. isolate NA-0cm_bin.15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAZKRO000000000
VERSION     NZ_JAZKRO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38145984
            Assembly: GCF_036628595.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronomonas sp. (hypersaline lake metagenome)
  ORGANISM  Natronomonas sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2776291)
  AUTHORS   Maritan,A., Shoemaker,A., Cosar,S., Nupp,S., Menchaca,A.,
            Jackson,T., Dang,A., Baxter,B., Dunham,E., Colman,D.R. and
            Boyd,E.S.
  TITLE     Metagenomic analysis of Great Salt Lake North Arm Sediment Core
            Microbial Communities
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2776291)
  AUTHORS   Colman,D.R., Boyd,E.S. and Dunham,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZKRO000000000.1.
            The Natronomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAZKRO000000000.  This version of the project
            (01) has the accession number NZ_JAZKRO010000000, and consists of
            sequences JAZKRO010000001-JAZKRO010000248.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.17x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036628595.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 23:43:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,139
            CDSs (total)                      :: 3,105
            Genes (coding)                    :: 3,043
            CDSs (with protein)               :: 3,043
            Genes (RNA)                       :: 34
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 2 of 62
            Pseudo Genes (incomplete)         :: 60 of 62
            Pseudo Genes (internal stop)      :: 2 of 62
            Pseudo Genes (multiple problems)  :: 2 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776291
                     /organism="Natronomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="NA-0cm_bin.15"
                     /isolation_source="sediments"
                     /db_xref="taxon:2184060"
                     /environmental_sample
                     /geo_loc_name="USA: Great Salt Lake"
                     /lat_lon="41.43783 N 112.67103 W"
                     /collection_date="2016"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JAZKRO010000001-JAZKRO010000248
WGS_SCAFLD  NZ_JAZKRO010000001-NZ_JAZKRO010000248
//
LOCUS       NZ_JAZKTR010000000   2548520 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Natronomonas sp. isolate NA-5cm_bin.4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAZKTR000000000
VERSION     NZ_JAZKTR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38146039
            Assembly: GCF_036625485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Natronomonas sp. (hypersaline lake metagenome)
  ORGANISM  Natronomonas sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Natronomonadaceae; Natronomonas.
REFERENCE   1  (bases 1 to 2548520)
  AUTHORS   Maritan,A., Shoemaker,A., Cosar,S., Nupp,S., Menchaca,A.,
            Jackson,T., Dang,A., Baxter,B., Dunham,E., Colman,D.R. and
            Boyd,E.S.
  TITLE     Metagenomic analysis of Great Salt Lake North Arm Sediment Core
            Microbial Communities
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2548520)
  AUTHORS   Colman,D.R., Boyd,E.S. and Dunham,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZKTR000000000.1.
            The Natronomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAZKTR000000000.  This version of the project
            (01) has the accession number NZ_JAZKTR010000000, and consists of
            sequences JAZKTR010000001-JAZKTR010000243.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.08x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036625485.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 23:42:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,920
            CDSs (total)                      :: 2,889
            Genes (coding)                    :: 2,829
            CDSs (with protein)               :: 2,829
            Genes (RNA)                       :: 31
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 0 of 60
            Pseudo Genes (incomplete)         :: 60 of 60
            Pseudo Genes (internal stop)      :: 0 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548520
                     /organism="Natronomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="NA-5cm_bin.4"
                     /isolation_source="sediments"
                     /db_xref="taxon:2184060"
                     /environmental_sample
                     /geo_loc_name="USA: Great Salt Lake"
                     /lat_lon="41.43783 N 112.67103 W"
                     /collection_date="2016"
                     /metagenome_source="hypersaline lake metagenome"
                     /metagenomic
WGS         JAZKTR010000001-JAZKTR010000243
WGS_SCAFLD  NZ_JAZKTR010000001-NZ_JAZKTR010000243
//
LOCUS       NZ_JAVYIM010000000   1525366 bp    DNA     linear   ENV 26-AUG-2025
DEFINITION  MAG: Nitrosarchaeum sp. isolate BO1-MAG1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAVYIM000000000
VERSION     NZ_JAVYIM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36890729
            Assembly: GCF_035968265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Nitrosarchaeum sp. (freshwater sediment metagenome)
  ORGANISM  Nitrosarchaeum sp.
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales;
            Nitrosopumilaceae; Nitrosarchaeum.
REFERENCE   1  (bases 1 to 1525366)
  AUTHORS   Bollmann,A., Sedlacek,C.J., Sayavedra-Soto,L. and Norton,J.M.
  TITLE     Metagenome assembled Genomes of two nitrifying microorganisms from
            the freshwater archaeal ammonia-oxidizing enrichment culture BO1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1525366)
  AUTHORS   Bollmann,A., Sedlacek,C.J., Sayavedra-Soto,L. and Norton,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2023) Microbiology, Miami University, 700 East
            High Street, Oxford, OH 45056, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVYIM000000000.1.
            The Nitrosarchaeum sp. whole genome shotgun (WGS) project has the
            project accession NZ_JAVYIM000000000.  This version of the project
            (01) has the accession number NZ_JAVYIM010000000, and consists of
            sequences JAVYIM010000001-JAVYIM010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Annette Bollmann, Miami
            University, Department of Microbiology, Oxford OH 45056, USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035968265.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 20:16:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,860
            CDSs (total)                      :: 1,811
            Genes (coding)                    :: 1,805
            CDSs (with protein)               :: 1,805
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 0 of 6
            Pseudo Genes (incomplete)         :: 6 of 6
            Pseudo Genes (internal stop)      :: 0 of 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525366
                     /organism="Nitrosarchaeum sp."
                     /mol_type="genomic DNA"
                     /isolate="BO1-MAG1"
                     /isolation_source="enrichment culture BO1 from freshwater
                     sediment"
                     /db_xref="taxon:2026886"
                     /environmental_sample
                     /geo_loc_name="USA: Burr Oak Reservoir, Ohio"
                     /lat_lon="39.5264 N 82.0444 W"
                     /collection_date="2009-10"
                     /metagenome_source="freshwater sediment metagenome"
                     /metagenomic
WGS         JAVYIM010000001-JAVYIM010000008
WGS_SCAFLD  NZ_JAVYIM010000001-NZ_JAVYIM010000008
//
LOCUS       NZ_JAZHPG010000000   2720691 bp    DNA     linear   BCT 27-AUG-2025
DEFINITION  Salarchaeum sp. III, whole genome shotgun sequencing project.
ACCESSION   NZ_JAZHPG000000000
VERSION     NZ_JAZHPG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38799171
            Assembly: GCF_036418315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salarchaeum sp. III
  ORGANISM  Salarchaeum sp. III
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Halobacteriaceae.
REFERENCE   1  (bases 1 to 2720691)
  AUTHORS   Balcha,E.S.
  TITLE     Draft Genome Sequence of Salarachaeum sp. Strain III
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2720691)
  AUTHORS   Balcha,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2024) Biotechnology, Addis Ababa Science and
            Technology University, Klinto, Addis Ababa 16417, Ethiopia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZHPG000000000.1.
            The Salarchaeum sp. III whole genome shotgun (WGS) project has the
            project accession NZ_JAZHPG000000000.  This version of the project
            (01) has the accession number NZ_JAZHPG010000000, and consists of
            sequences JAZHPG010000001-JAZHPG010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 23-MAY-2023
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036418315.1-RS_2025_08_25
            Annotation Date                   :: 08/25/2025 23:24:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,038
            CDSs (total)                      :: 2,987
            Genes (coding)                    :: 2,932
            CDSs (with protein)               :: 2,932
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 20 of 55
            Pseudo Genes (incomplete)         :: 39 of 55
            Pseudo Genes (internal stop)      :: 7 of 55
            Pseudo Genes (multiple problems)  :: 10 of 55
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2720691
                     /organism="Salarchaeum sp. III"
                     /mol_type="genomic DNA"
                     /strain="III"
                     /isolation_source="Lake water [ENVO:000043]"
                     /db_xref="taxon:3107927"
                     /geo_loc_name="Ethiopia: Afar depression"
                     /lat_lon="14.0207 N 40.4007 E"
                     /collection_date="2018-01-25"
WGS         JAZHPG010000001-JAZHPG010000027
WGS_SCAFLD  NZ_JAZHPG010000001-NZ_JAZHPG010000027
//
LOCUS       NZ_JBGMED010000000   2362978 bp    DNA     linear   ENV 28-AUG-2025
DEFINITION  MAG: Methanobacterium formicicum isolate 3DMC, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGMED000000000
VERSION     NZ_JBGMED000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN42317188
            Assembly: GCF_041447325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanobacterium formicicum (sediment metagenome)
  ORGANISM  Methanobacterium formicicum
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobacterium.
REFERENCE   1  (bases 1 to 2362978)
  AUTHORS   Wang,J., Yang,S. and Yang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2024) Contaminated Ecosystem Microbial Processes,
            Institute of Applied Ecology, Renhe street, Shenyang, Liaoning
            110121, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGMED000000000.1.
            The Methanobacterium formicicum whole genome shotgun (WGS) project
            has the project accession NZ_JBGMED000000000.  This version of the
            project (01) has the accession number NZ_JBGMED010000000, and
            consists of sequences JBGMED010000001-JBGMED010000098.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Jingjing Wang.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: JGI Metagenome Assembly Pipeline v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041447325.1-RS_2025_08_26
            Annotation Date                   :: 08/26/2025 12:13:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,389
            CDSs (total)                      :: 2,342
            Genes (coding)                    :: 2,329
            CDSs (with protein)               :: 2,329
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 12 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362978
                     /organism="Methanobacterium formicicum"
                     /mol_type="genomic DNA"
                     /isolate="3DMC"
                     /isolation_source="river sediment"
                     /db_xref="taxon:2162"
                     /environmental_sample
                     /geo_loc_name="China"
                     /lat_lon="41.62 N 123.06 E"
                     /collection_date="2023"
                     /metagenome_source="sediment metagenome"
                     /metagenomic
WGS         JBGMED010000001-JBGMED010000098
WGS_SCAFLD  NZ_JBGMED010000001-NZ_JBGMED010000098
//
LOCUS       NZ_JBBHKS010000000   2352648 bp    DNA     linear   BCT 29-AUG-2025
DEFINITION  Stygiolobus sp. CP859M, whole genome shotgun sequencing project.
ACCESSION   NZ_JBBHKS000000000
VERSION     NZ_JBBHKS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37693831
            Assembly: GCF_037389975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stygiolobus sp. CP859M
  ORGANISM  Stygiolobus sp. CP859M
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Stygiolobus.
REFERENCE   1  (bases 1 to 2352648)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Acidophile isolates from Yellowstone National Park Hot springs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2352648)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBHKS000000000.1.
            The Stygiolobus sp. CP859M whole genome shotgun (WGS) project has
            the project accession NZ_JBBHKS000000000.  This version of the
            project (01) has the accession number NZ_JBBHKS010000000, and
            consists of sequences JBBHKS010000001-JBBHKS010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 130.6x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037389975.1-RS_2025_08_27
            Annotation Date                   :: 08/27/2025 13:40:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,650
            CDSs (total)                      :: 2,599
            Genes (coding)                    :: 2,430
            CDSs (with protein)               :: 2,430
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 169
            CDSs (without protein)            :: 169
            Pseudo Genes (ambiguous residues) :: 0 of 169
            Pseudo Genes (frameshifted)       :: 82 of 169
            Pseudo Genes (incomplete)         :: 107 of 169
            Pseudo Genes (internal stop)      :: 30 of 169
            Pseudo Genes (multiple problems)  :: 44 of 169
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352648
                     /organism="Stygiolobus sp. CP859M"
                     /mol_type="genomic DNA"
                     /strain="CP859M"
                     /isolation_source="ENVO:0000207"
                     /db_xref="taxon:3133135"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /lat_lon="44.73244 N 110.70978 W"
                     /collection_date="2021"
WGS         JBBHKS010000001-JBBHKS010000025
WGS_SCAFLD  NZ_JBBHKS010000001-NZ_JBBHKS010000025
//
LOCUS       NZ_JBBHKU010000000   1891912 bp    DNA     linear   BCT 29-AUG-2025
DEFINITION  Stygiolobus sp. RP850M, whole genome shotgun sequencing project.
ACCESSION   NZ_JBBHKU000000000
VERSION     NZ_JBBHKU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37693833
            Assembly: GCF_037389295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stygiolobus sp. RP850M
  ORGANISM  Stygiolobus sp. RP850M
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Stygiolobus.
REFERENCE   1  (bases 1 to 1891912)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Acidophile isolates from Yellowstone National Park Hot springs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1891912)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBHKU000000000.1.
            The Stygiolobus sp. RP850M whole genome shotgun (WGS) project has
            the project accession NZ_JBBHKU000000000.  This version of the
            project (01) has the accession number NZ_JBBHKU010000000, and
            consists of sequences JBBHKU010000001-JBBHKU010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.9x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037389295.1-RS_2025_08_27
            Annotation Date                   :: 08/27/2025 13:39:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,259
            CDSs (total)                      :: 2,218
            Genes (coding)                    :: 2,059
            CDSs (with protein)               :: 2,059
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 56 of 159
            Pseudo Genes (incomplete)         :: 122 of 159
            Pseudo Genes (internal stop)      :: 28 of 159
            Pseudo Genes (multiple problems)  :: 38 of 159
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891912
                     /organism="Stygiolobus sp. RP850M"
                     /mol_type="genomic DNA"
                     /strain="RP850M"
                     /isolation_source="ENVO:0000207"
                     /db_xref="taxon:3133137"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /lat_lon="44.73558 N 110.70705 W"
                     /collection_date="2020"
WGS         JBBHKU010000001-JBBHKU010000074
WGS_SCAFLD  NZ_JBBHKU010000001-NZ_JBBHKU010000074
//
LOCUS       NZ_JBBHKT010000000   2329099 bp    DNA     linear   BCT 29-AUG-2025
DEFINITION  Stygiolobus sp. CP8521M, whole genome shotgun sequencing project.
ACCESSION   NZ_JBBHKT000000000
VERSION     NZ_JBBHKT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37693832
            Assembly: GCF_037389335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stygiolobus sp. CP8521M
  ORGANISM  Stygiolobus sp. CP8521M
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Stygiolobus.
REFERENCE   1  (bases 1 to 2329099)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Acidophile isolates from Yellowstone National Park Hot springs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2329099)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBHKT000000000.1.
            The Stygiolobus sp. CP8521M whole genome shotgun (WGS) project has
            the project accession NZ_JBBHKT000000000.  This version of the
            project (01) has the accession number NZ_JBBHKT010000000, and
            consists of sequences JBBHKT010000001-JBBHKT010000028.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 129.2x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037389335.1-RS_2025_08_27
            Annotation Date                   :: 08/27/2025 13:39:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,634
            CDSs (total)                      :: 2,583
            Genes (coding)                    :: 2,415
            CDSs (with protein)               :: 2,415
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 168
            CDSs (without protein)            :: 168
            Pseudo Genes (ambiguous residues) :: 0 of 168
            Pseudo Genes (frameshifted)       :: 82 of 168
            Pseudo Genes (incomplete)         :: 111 of 168
            Pseudo Genes (internal stop)      :: 30 of 168
            Pseudo Genes (multiple problems)  :: 50 of 168
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2329099
                     /organism="Stygiolobus sp. CP8521M"
                     /mol_type="genomic DNA"
                     /strain="CP8521M"
                     /isolation_source="ENVO:0000207"
                     /db_xref="taxon:3133136"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /lat_lon="44.73244 N 110.70978 W"
                     /collection_date="2022"
WGS         JBBHKT010000001-JBBHKT010000028
WGS_SCAFLD  NZ_JBBHKT010000001-NZ_JBBHKT010000028
//
LOCUS       NZ_JBBHKR010000000   2332865 bp    DNA     linear   BCT 29-AUG-2025
DEFINITION  Stygiolobus sp. CP850M, whole genome shotgun sequencing project.
ACCESSION   NZ_JBBHKR000000000
VERSION     NZ_JBBHKR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37693830
            Assembly: GCF_037389425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stygiolobus sp. CP850M
  ORGANISM  Stygiolobus sp. CP850M
            Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae;
            Stygiolobus.
REFERENCE   1  (bases 1 to 2332865)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Acidophile isolates from Yellowstone National Park Hot springs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2332865)
  AUTHORS   Fernandes-Martins,M.C., Colman,D.R. and Boyd,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2023) Microbiology and Immunology, Montana State
            University, 1501 S. 11th Ave., Bozeman, MT 59718, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBHKR000000000.1.
            The Stygiolobus sp. CP850M whole genome shotgun (WGS) project has
            the project accession NZ_JBBHKR000000000.  This version of the
            project (01) has the accession number NZ_JBBHKR010000000, and
            consists of sequences JBBHKR010000001-JBBHKR010000108.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 124.7x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037389425.1-RS_2025_08_27
            Annotation Date                   :: 08/27/2025 13:44:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,720
            CDSs (total)                      :: 2,671
            Genes (coding)                    :: 2,509
            CDSs (with protein)               :: 2,509
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 73 of 162
            Pseudo Genes (incomplete)         :: 117 of 162
            Pseudo Genes (internal stop)      :: 34 of 162
            Pseudo Genes (multiple problems)  :: 54 of 162
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332865
                     /organism="Stygiolobus sp. CP850M"
                     /mol_type="genomic DNA"
                     /strain="CP850M"
                     /isolation_source="ENVO:0000207"
                     /db_xref="taxon:3133134"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /lat_lon="44.732440 N 110.709780 W"
                     /collection_date="2020"
WGS         JBBHKR010000001-JBBHKR010000108
WGS_SCAFLD  NZ_JBBHKR010000001-NZ_JBBHKR010000108
//
LOCUS       NZ_JBLSDF010000000   1655781 bp    DNA     linear   BCT 29-AUG-2025
DEFINITION  Cuniculiplasma sp. SKW3, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLSDF000000000
VERSION     NZ_JBLSDF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46771177
            Assembly: GCF_052315355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Cuniculiplasma sp. SKW3
  ORGANISM  Cuniculiplasma sp. SKW3
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Cuniculiplasmataceae; Cuniculiplasma.
REFERENCE   1  (bases 1 to 1655781)
  AUTHORS   Tsukamoto,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2025) Microbe Division, RIKEN, 3-1-1 Koyadai,
            Tsukuba, Ibaraki 3050074, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLSDF000000000.1.
            The Cuniculiplasma sp. SKW3 whole genome shotgun (WGS) project has
            the project accession NZ_JBLSDF000000000.  This version of the
            project (01) has the accession number NZ_JBLSDF010000000, and
            consists of sequences JBLSDF010000001-JBLSDF010000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1558x
            Sequencing Technology  :: DNBSEQ
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052315355.1-RS_2025_08_28
            Annotation Date                   :: 08/28/2025 11:39:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,727
            CDSs (total)                      :: 1,676
            Genes (coding)                    :: 1,649
            CDSs (with protein)               :: 1,649
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 1 of 27
            Pseudo Genes (incomplete)         :: 23 of 27
            Pseudo Genes (internal stop)      :: 3 of 27
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655781
                     /organism="Cuniculiplasma sp. SKW3"
                     /mol_type="genomic DNA"
                     /strain="SKW3"
                     /isolation_source="Microbial mat"
                     /db_xref="taxon:3400170"
                     /geo_loc_name="Japan"
                     /collection_date="2023-07-18"
WGS         JBLSDF010000001-JBLSDF010000073
WGS_SCAFLD  NZ_JBLSDF010000001-NZ_JBLSDF010000073
//
LOCUS       NZ_JBLSDE010000000   1655840 bp    DNA     linear   BCT 29-AUG-2025
DEFINITION  Cuniculiplasma sp. SKW4, whole genome shotgun sequencing project.
ACCESSION   NZ_JBLSDE000000000
VERSION     NZ_JBLSDE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46771178
            Assembly: GCF_052315315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Cuniculiplasma sp. SKW4
  ORGANISM  Cuniculiplasma sp. SKW4
            Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata;
            Thermoplasmatales; Cuniculiplasmataceae; Cuniculiplasma.
REFERENCE   1  (bases 1 to 1655840)
  AUTHORS   Tsukamoto,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2025) Microbe Division, RIKEN, 3-1-1 Koyadai,
            Tsukuba, Ibaraki 3050074, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLSDE000000000.1.
            The Cuniculiplasma sp. SKW4 whole genome shotgun (WGS) project has
            the project accession NZ_JBLSDE000000000.  This version of the
            project (01) has the accession number NZ_JBLSDE010000000, and
            consists of sequences JBLSDE010000001-JBLSDE010000067.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1566x
            Sequencing Technology  :: DNBSEQ
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052315315.1-RS_2025_08_28
            Annotation Date                   :: 08/28/2025 11:40:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,765
            CDSs (total)                      :: 1,714
            Genes (coding)                    :: 1,681
            CDSs (with protein)               :: 1,681
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 1 of 33
            Pseudo Genes (incomplete)         :: 28 of 33
            Pseudo Genes (internal stop)      :: 6 of 33
            Pseudo Genes (multiple problems)  :: 2 of 33
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655840
                     /organism="Cuniculiplasma sp. SKW4"
                     /mol_type="genomic DNA"
                     /strain="SKW4"
                     /isolation_source="Microbial mat"
                     /db_xref="taxon:3400171"
                     /geo_loc_name="Japan"
                     /collection_date="2023-07-18"
WGS         JBLSDE010000001-JBLSDE010000067
WGS_SCAFLD  NZ_JBLSDE010000001-NZ_JBLSDE010000067
//
LOCUS       NZ_JALIQO010000000   3661127 bp    DNA     linear   BCT 30-AUG-2025
DEFINITION  Halorientalis salina strain NEN8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALIQO000000000
VERSION     NZ_JALIQO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27281454
            Assembly: GCF_023566035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorientalis salina
  ORGANISM  Halorientalis salina
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloarculaceae; Halorientalis.
REFERENCE   1  (bases 1 to 3661127)
  AUTHORS   Cui,H.-L.
  TITLE     Diverse halophilic archaea isolated from saline environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3661127)
  AUTHORS   Cui,H.-L.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2022) School of Food and Biological Engineering,
            Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALIQO000000000.1.
            The Halorientalis salina whole genome shotgun (WGS) project has the
            project accession NZ_JALIQO000000000.  This version of the project
            (01) has the accession number NZ_JALIQO010000000, and consists of
            sequences JALIQO010000001-JALIQO010000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 190.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023566035.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 11:15:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,768
            CDSs (total)                      :: 3,712
            Genes (coding)                    :: 3,653
            CDSs (with protein)               :: 3,653
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 12 of 59
            Pseudo Genes (incomplete)         :: 46 of 59
            Pseudo Genes (internal stop)      :: 7 of 59
            Pseudo Genes (multiple problems)  :: 5 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661127
                     /organism="Halorientalis salina"
                     /mol_type="genomic DNA"
                     /strain="NEN8"
                     /isolation_source="sediment"
                     /type_material="type strain of Halorientalis salina"
                     /db_xref="taxon:2932266"
                     /geo_loc_name="China: Tibet"
                     /collection_date="2013-06"
WGS         JALIQO010000001-JALIQO010000023
WGS_SCAFLD  NZ_JALIQO010000001-NZ_JALIQO010000023
//
LOCUS       NZ_JBGNYA010000000   3286070 bp    DNA     linear   BCT 30-AUG-2025
DEFINITION  Halobellus rubicundus strain MBLA0158, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGNYA000000000
VERSION     NZ_JBGNYA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31823812
            Assembly: GCF_041477585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halobellus rubicundus
  ORGANISM  Halobellus rubicundus
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halobellus.
REFERENCE   1  (bases 1 to 3286070)
  AUTHORS   Hwang,C.Y., Cho,E.-S. and Seo,M.-J.
  TITLE     Halobellus sp. MBLA0158 whole genome sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3286070)
  AUTHORS   Hwang,C.Y., Cho,E.-S. and Seo,M.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-AUG-2024) Division of Bioengineering, Incheon
            National University, 119 Academy-ro, Incheon 22012, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGNYA000000000.1.
            The Halobellus rubicundus whole genome shotgun (WGS) project has
            the project accession NZ_JBGNYA000000000.  This version of the
            project (01) has the accession number NZ_JBGNYA010000000, and
            consists of sequences JBGNYA010000001-JBGNYA010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Incheon National University,
            Myung-Ji Seo.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2022
            Assembly Method        :: FLYE v. v2.8.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3128.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041477585.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 13:18:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,360
            CDSs (total)                      :: 3,299
            Genes (coding)                    :: 3,256
            CDSs (with protein)               :: 3,256
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 18 of 43
            Pseudo Genes (incomplete)         :: 26 of 43
            Pseudo Genes (internal stop)      :: 15 of 43
            Pseudo Genes (multiple problems)  :: 12 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286070
                     /organism="Halobellus rubicundus"
                     /mol_type="genomic DNA"
                     /strain="MBLA0158"
                     /isolation_source="solar saltern"
                     /type_material="type strain of Halobellus rubicundus"
                     /db_xref="taxon:2996466"
                     /geo_loc_name="South Korea: Siheung"
                     /collection_date="2018-03"
WGS         JBGNYA010000001-JBGNYA010000002
WGS_SCAFLD  NZ_JBGNYA010000001-NZ_JBGNYA010000002
//
LOCUS       NZ_JBKQRI010000000   1895423 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate MGr2D2E2F__bin_67, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQRI000000000
VERSION     NZ_JBKQRI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187579
            Sequence Read Archive: SRR31840437, SRR31840436, SRR31840435
            Assembly: GCF_052326025.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 1895423)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1895423)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQRI000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQRI000000000.  This version of the project
            (01) has the accession number NZ_JBKQRI010000000, and consists of
            sequences JBKQRI010000001-JBKQRI010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.03x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052326025.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:58:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,953
            CDSs (total)                      :: 1,899
            Genes (coding)                    :: 1,889
            CDSs (with protein)               :: 1,889
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 0 of 10
            Pseudo Genes (incomplete)         :: 10 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895423
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MGr2D2E2F__bin_67"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: Wales"
                     /lat_lon="52.99835 N 3.80032 W"
                     /collection_date="2021-05"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQRI010000001-JBKQRI010000033
WGS_SCAFLD  NZ_JBKQRI010000001-NZ_JBKQRI010000033
//
LOCUS       NZ_JBKQSJ010000000   1946881 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate MGr3G3H3I__bin_91, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQSJ000000000
VERSION     NZ_JBKQSJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187606
            Sequence Read Archive: SRR31840434, SRR31840433, SRR31840431
            Assembly: GCF_052325825.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 1946881)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1946881)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQSJ000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQSJ000000000.  This version of the project
            (01) has the accession number NZ_JBKQSJ010000000, and consists of
            sequences JBKQSJ010000001-JBKQSJ010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 24.76x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052325825.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:57:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,003
            CDSs (total)                      :: 1,952
            Genes (coding)                    :: 1,943
            CDSs (with protein)               :: 1,943
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 9 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946881
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MGr3G3H3I__bin_91"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: Wales"
                     /lat_lon="52.99565 N 3.81652 W"
                     /collection_date="2021-05"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQSJ010000001-JBKQSJ010000024
WGS_SCAFLD  NZ_JBKQSJ010000001-NZ_JBKQSJ010000024
//
LOCUS       NZ_JBKQLP010000000   2006101 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate CRr3G3H3I__bin_111, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQLP000000000
VERSION     NZ_JBKQLP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187430
            Sequence Read Archive: SRR31840460, SRR31840459, SRR31840458
            Assembly: GCF_052326645.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2006101)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2006101)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQLP000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQLP000000000.  This version of the project
            (01) has the accession number NZ_JBKQLP010000000, and consists of
            sequences JBKQLP010000001-JBKQLP010000045.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052326645.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:58:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,066
            CDSs (total)                      :: 2,011
            Genes (coding)                    :: 1,999
            CDSs (with protein)               :: 1,999
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 0 of 12
            Pseudo Genes (incomplete)         :: 12 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006101
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="CRr3G3H3I__bin_111"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: Scotland"
                     /lat_lon="58.39304 N 4.00182 W"
                     /collection_date="2021-06"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQLP010000001-JBKQLP010000045
WGS_SCAFLD  NZ_JBKQLP010000001-NZ_JBKQLP010000045
//
LOCUS       NZ_JBKQUN010000000   2083129 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate SEr2D2E2F__bin_155, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQUN000000000
VERSION     NZ_JBKQUN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187670
            Sequence Read Archive: SRR31840420, SRR31840419, SRR31840418
            Assembly: GCF_052325565.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2083129)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2083129)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQUN000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQUN000000000.  This version of the project
            (01) has the accession number NZ_JBKQUN010000000, and consists of
            sequences JBKQUN010000001-JBKQUN010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 38.06x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052325565.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,183
            CDSs (total)                      :: 2,130
            Genes (coding)                    :: 2,115
            CDSs (with protein)               :: 2,115
            Genes (RNA)                       :: 53
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 0 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083129
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SEr2D2E2F__bin_155"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: England"
                     /lat_lon="54.13559 N 1.92875 W"
                     /collection_date="2021-06"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQUN010000001-JBKQUN010000050
WGS_SCAFLD  NZ_JBKQUN010000001-NZ_JBKQUN010000050
//
LOCUS       NZ_JBKQQI010000000   2069466 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate MGr1A1B1C__bin_92, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQQI000000000
VERSION     NZ_JBKQQI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187553
            Sequence Read Archive: SRR31840440, SRR31840439, SRR31840438
            Assembly: GCF_052326185.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2069466)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2069466)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQQI000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQQI000000000.  This version of the project
            (01) has the accession number NZ_JBKQQI010000000, and consists of
            sequences JBKQQI010000001-JBKQQI010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.69x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052326185.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:58:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,148
            CDSs (total)                      :: 2,093
            Genes (coding)                    :: 2,084
            CDSs (with protein)               :: 2,084
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 9 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069466
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MGr1A1B1C__bin_92"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: Wales"
                     /lat_lon="52.96932 N 3.81616 W"
                     /collection_date="2021-05"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQQI010000001-JBKQQI010000026
WGS_SCAFLD  NZ_JBKQQI010000001-NZ_JBKQQI010000026
//
LOCUS       NZ_JBKQWO010000000   2463803 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate SEr3G3H3I__bin_84, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQWO000000000
VERSION     NZ_JBKQWO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187723
            Sequence Read Archive: SRR31840417, SRR31840416, SRR31840415
            Assembly: GCF_052325125.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2463803)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2463803)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQWO000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQWO000000000.  This version of the project
            (01) has the accession number NZ_JBKQWO010000000, and consists of
            sequences JBKQWO010000001-JBKQWO010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 97.57x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052325125.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:57:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,508
            CDSs (total)                      :: 2,453
            Genes (coding)                    :: 2,431
            CDSs (with protein)               :: 2,431
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 20 of 22
            Pseudo Genes (internal stop)      :: 0 of 22
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463803
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="SEr3G3H3I__bin_84"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: England"
                     /lat_lon="54.1308 N 1.95015 W"
                     /collection_date="2021-06"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQWO010000001-JBKQWO010000052
WGS_SCAFLD  NZ_JBKQWO010000001-NZ_JBKQWO010000052
//
LOCUS       NZ_JBKQIE010000000   2049222 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate BAr1A1B1C__bin_43, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQIE000000000
VERSION     NZ_JBKQIE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187341
            Sequence Read Archive: SRR31840477, SRR31840476, SRR31840465
            Assembly: GCF_052327065.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2049222)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2049222)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQIE000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQIE000000000.  This version of the project
            (01) has the accession number NZ_JBKQIE010000000, and consists of
            sequences JBKQIE010000001-JBKQIE010000035.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.21x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052327065.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:58:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,116
            CDSs (total)                      :: 2,062
            Genes (coding)                    :: 2,053
            CDSs (with protein)               :: 2,053
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 0 of 9
            Pseudo Genes (incomplete)         :: 9 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049222
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="BAr1A1B1C__bin_43"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: Scotland"
                     /lat_lon="56.92341 N 3.67514 W"
                     /collection_date="2021-10"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQIE010000001-JBKQIE010000035
WGS_SCAFLD  NZ_JBKQIE010000001-NZ_JBKQIE010000035
//
LOCUS       NZ_JBKQTT010000000   2092053 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate MHr3G3H3I__bin_106, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQTT000000000
VERSION     NZ_JBKQTT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187642
            Sequence Read Archive: SRR31840424, SRR31840423, SRR31840422
            Assembly: GCF_052325685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2092053)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2092053)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQTT000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQTT000000000.  This version of the project
            (01) has the accession number NZ_JBKQTT010000000, and consists of
            sequences JBKQTT010000001-JBKQTT010000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.46x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052325685.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:57:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,167
            CDSs (total)                      :: 2,117
            Genes (coding)                    :: 2,105
            CDSs (with protein)               :: 2,105
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 0 of 12
            Pseudo Genes (incomplete)         :: 12 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092053
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MHr3G3H3I__bin_106"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: England"
                     /lat_lon="54.69166 N 2.38228 W"
                     /collection_date="2021-09"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQTT010000001-JBKQTT010000037
WGS_SCAFLD  NZ_JBKQTT010000001-NZ_JBKQTT010000037
//
LOCUS       NZ_JBKQLN010000000   2087732 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate CRr2D2E2F__bin_98, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQLN000000000
VERSION     NZ_JBKQLN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187428
            Sequence Read Archive: SRR31840463, SRR31840462, SRR31840461
            Assembly: GCF_052326655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2087732)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2087732)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQLN000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQLN000000000.  This version of the project
            (01) has the accession number NZ_JBKQLN010000000, and consists of
            sequences JBKQLN010000001-JBKQLN010000039.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31.26x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052326655.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:57:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,155
            CDSs (total)                      :: 2,102
            Genes (coding)                    :: 2,091
            CDSs (with protein)               :: 2,091
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 0 of 11
            Pseudo Genes (incomplete)         :: 10 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087732
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="CRr2D2E2F__bin_98"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: Scotland"
                     /lat_lon="58.38789 N 3.99658 W"
                     /collection_date="2021-06"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQLN010000001-JBKQLN010000039
WGS_SCAFLD  NZ_JBKQLN010000001-NZ_JBKQLN010000039
//
LOCUS       NZ_JBKQTB010000000   2044749 bp    DNA     linear   ENV 30-AUG-2025
DEFINITION  MAG: Methanoregula sp. isolate MHr1A1B1C__bin_66, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBKQTB000000000
VERSION     NZ_JBKQTB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46187624
            Sequence Read Archive: SRR31840430, SRR31840429, SRR31840428
            Assembly: GCF_052325745.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Methanoregula sp. (soil metagenome)
  ORGANISM  Methanoregula sp.
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Methanomicrobia; Methanomicrobiales; Methanoregulaceae;
            Methanoregula.
REFERENCE   1  (bases 1 to 2044749)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Ecosystem Health Shapes Viral Ecology in Peatland Soils
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2044749)
  AUTHORS   Kosmopoulos,J.C., Pallier,W., Malik,A. and Anantharaman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2025) Bacteriology, The University of
            Wisconsin-Madison, 1550 Linden Dr, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKQTB000000000.1.
            The Methanoregula sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBKQTB000000000.  This version of the project
            (01) has the accession number NZ_JBKQTB010000000, and consists of
            sequences JBKQTB010000001-JBKQTB010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2024
            Assembly Method        :: MEGAHIT,metaBAT2 v. 1.2.9,2.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.66x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052325745.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 02:56:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,043
            Genes (coding)                    :: 2,029
            CDSs (with protein)               :: 2,029
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 0 of 14
            Pseudo Genes (incomplete)         :: 14 of 14
            Pseudo Genes (internal stop)      :: 0 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044749
                     /organism="Methanoregula sp."
                     /mol_type="genomic DNA"
                     /isolate="MHr1A1B1C__bin_66"
                     /isolation_source="peat soil"
                     /db_xref="taxon:2052170"
                     /environmental_sample
                     /geo_loc_name="United Kingdom: England"
                     /lat_lon="54.69457 N 2.37661 W"
                     /collection_date="2021-09"
                     /metagenome_source="soil metagenome"
                     /metagenomic
WGS         JBKQTB010000001-JBKQTB010000026
WGS_SCAFLD  NZ_JBKQTB010000001-NZ_JBKQTB010000026
//
LOCUS       NZ_JBGOSM010000000   1822024 bp    DNA     linear   BCT 30-AUG-2025
DEFINITION  Methanobrevibacter smithii strain U29, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGOSM000000000
VERSION     NZ_JBGOSM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43285203
            Assembly: GCF_041537865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methanobrevibacter smithii
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1822024)
  AUTHORS   Malat,I., Bossi,V., Drancourt,M., Ruimy,R. and Grine,G.
  TITLE     Methanobrevibacter smithii strain U29 whole genome sequence
            delineates M. smithii intermediate cell variants
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1822024)
  AUTHORS   Malat,I., Bossi,V., Drancourt,M., Ruimy,R. and Grine,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2024) MEPHI, IHU - Mediterranee Infection, 19-21
            Boulevard Jean Moulin, Marseille 13005, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGOSM000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_JBGOSM000000000.  This version of the
            project (01) has the accession number NZ_JBGOSM010000000, and
            consists of sequences JBGOSM010000001-JBGOSM010000111.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041537865.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 13:12:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,809
            CDSs (total)                      :: 1,768
            Genes (coding)                    :: 1,734
            CDSs (with protein)               :: 1,734
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 10 of 34
            Pseudo Genes (incomplete)         :: 24 of 34
            Pseudo Genes (internal stop)      :: 5 of 34
            Pseudo Genes (multiple problems)  :: 3 of 34
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822024
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /strain="U29"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:2173"
                     /geo_loc_name="France"
                     /lat_lon="43.3026 N 5.3691 E"
                     /collection_date="2019"
WGS         JBGOSM010000001-JBGOSM010000111
WGS_SCAFLD  NZ_JBGOSM010000001-NZ_JBGOSM010000111
//
LOCUS       NZ_NCQP01000000      2042801 bp    DNA     linear   BCT 30-AUG-2025
DEFINITION  Pyrodictium delaneyi strain Hulk, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NCQP00000000
VERSION     NZ_NCQP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06702682
            Assembly: GCF_002194565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrodictium delaneyi
  ORGANISM  Pyrodictium delaneyi
            Archaea; Thermoproteota; Thermoprotei; Desulfurococcales;
            Pyrodictiaceae; Pyrodictium.
REFERENCE   1  (bases 1 to 2042801)
  AUTHORS   Demey,L.M., Miller,C., Manzella,M., Reguera,G. and Kashefi,K.
  TITLE     The draft genome of the hyperthermophilic archaeon 'Pyrodictium
            delaneyi strain Hulk', an iron and nitrate reducer, reveals the
            capacity for sulfate reduction
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2042801)
  AUTHORS   Demey,L.M., Miller,C., Manzella,M., Reguera,G. and Kashefi,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAY-2017) Microbiology and Molecular Genetics,
            Michigan State University, 567 Wilson Rd., East Lansing, MI 48824,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NCQP00000000.1.
            The Pyrodictium delaneyi whole genome shotgun (WGS) project has the
            project accession NZ_NCQP00000000.  This version of the project
            (01) has the accession number NZ_NCQP01000000, and consists of
            sequences NCQP01000001-NCQP01000009.
            Bacteria and source DNA available from Kazem Kashefi, 567 Wilson
            Rd., East Lansing, MI 48824.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 2-6-2015
            Assembly Name          :: Pdsh-A1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002194565.1-RS_2025_08_29
            Annotation Date                   :: 08/29/2025 09:20:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,125
            CDSs (total)                      :: 2,071
            Genes (coding)                    :: 2,064
            CDSs (with protein)               :: 2,064
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 1 of 7
            Pseudo Genes (incomplete)         :: 6 of 7
            Pseudo Genes (internal stop)      :: 0 of 7
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042801
                     /organism="Pyrodictium delaneyi"
                     /mol_type="genomic DNA"
                     /strain="Hulk"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1273541"
                     /geo_loc_name="Pacific Ocean: Juan de Fuca Ridge"
                     /lat_lon="47.9501 N 129.097 W"
                     /collection_date="2004-05-15"
WGS         NCQP01000001-NCQP01000009
WGS_SCAFLD  NZ_NCQP01000001-NZ_NCQP01000009
//
LOCUS       NZ_DAWCLW010000000   1641881 bp    DNA     linear   ENV 31-AUG-2025
DEFINITION  MAG: Methanobrevibacter smithii isolate gSpreadC_ID_6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_DAWCLW000000000
VERSION     NZ_DAWCLW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37995567
            Sequence Read Archive: SRR4074351
            Assembly: GCF_052337265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Methanobrevibacter smithii (human gut metagenome)
  ORGANISM  Methanobrevibacter smithii
            Archaea; Methanobacteriati; Methanobacteriota; Methanomada group;
            Methanobacteria; Methanobacteriales; Methanobacteriaceae;
            Methanobrevibacter.
REFERENCE   1  (bases 1 to 1641881)
  AUTHORS   Kasmanas,J.C., Magnusdottir,S., Zhang,J., Smalla,K., Schloter,M.,
            Stadler,P.F., de Leon Ferreira de Carvalho,A.C.P. and Rocha,U.
  TITLE     Integrating comparative genomics and risk classification by
            assessing virulence, antimicrobial resistance, and plasmid spread
            in microbial communities with gSpreadComp
  JOURNAL   Gigascience 14 (2025)
   PUBMED   40569694
REFERENCE   2  (bases 1 to 1641881)
  AUTHORS   Kasmanas,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-NOV-2023) Department of Environmental Microbiology,
            Helmholtz Centre For Environmental Research - UFZ, Permoserstr. 15,
            Leipzig 04318, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DAWCLW000000000.1.
            The Methanobrevibacter smithii whole genome shotgun (WGS) project
            has the project accession NZ_DAWCLW000000000.  This version of the
            project (01) has the accession number NZ_DAWCLW010000000, and
            consists of sequences DAWCLW010000001-DAWCLW010000140.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_052337265.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 11:30:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,731
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,609
            CDSs (with protein)               :: 1,609
            Genes (RNA)                       :: 35
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 10 of 87
            Pseudo Genes (incomplete)         :: 67 of 87
            Pseudo Genes (internal stop)      :: 13 of 87
            Pseudo Genes (multiple problems)  :: 2 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641881
                     /organism="Methanobrevibacter smithii"
                     /mol_type="genomic DNA"
                     /isolate="gSpreadC_ID_6"
                     /isolation_source="human gut; stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:2173"
                     /environmental_sample
                     /geo_loc_name="Italy"
                     /collection_date="2016-09-03"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         DAWCLW010000001-DAWCLW010000140
WGS_SCAFLD  NZ_DAWCLW010000001-NZ_DAWCLW010000140
//
LOCUS       NZ_JARRIE010000000   1856293 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA32, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIE000000000
VERSION     NZ_JARRIE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962734
            Assembly: GCF_041647895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1856293)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1856293)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIE000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIE000000000.  This version of the
            project (01) has the accession number NZ_JARRIE010000000, and
            consists of sequences JARRIE010000001-JARRIE010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647895.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:00:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,147
            CDSs (total)                      :: 2,086
            Genes (coding)                    :: 2,059
            CDSs (with protein)               :: 2,059
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 7 of 27
            Pseudo Genes (incomplete)         :: 20 of 27
            Pseudo Genes (internal stop)      :: 2 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856293
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA32"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIE010000001-JARRIE010000010
WGS_SCAFLD  NZ_JARRIE010000001-NZ_JARRIE010000010
//
LOCUS       NZ_JARRIK010000000   1847330 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA41, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIK000000000
VERSION     NZ_JARRIK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962740
            Assembly: GCF_041647795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1847330)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1847330)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIK000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIK000000000.  This version of the
            project (01) has the accession number NZ_JARRIK010000000, and
            consists of sequences JARRIK010000001-JARRIK010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647795.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:01:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,106
            CDSs (total)                      :: 2,045
            Genes (coding)                    :: 2,028
            CDSs (with protein)               :: 2,028
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 7 of 17
            Pseudo Genes (incomplete)         :: 10 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847330
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA41"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIK010000001-JARRIK010000002
WGS_SCAFLD  NZ_JARRIK010000001-NZ_JARRIK010000002
//
LOCUS       NZ_JARRIC010000000   1895180 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA30, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIC000000000
VERSION     NZ_JARRIC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962732
            Assembly: GCF_041647975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1895180)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1895180)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIC000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIC000000000.  This version of the
            project (01) has the accession number NZ_JARRIC010000000, and
            consists of sequences JARRIC010000001-JARRIC010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647975.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:01:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,199
            CDSs (total)                      :: 2,138
            Genes (coding)                    :: 2,112
            CDSs (with protein)               :: 2,112
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 10 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895180
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA30"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIC010000001-JARRIC010000005
WGS_SCAFLD  NZ_JARRIC010000001-NZ_JARRIC010000005
//
LOCUS       NZ_JARRIF010000000   1886990 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA33, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIF000000000
VERSION     NZ_JARRIF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962735
            Assembly: GCF_041647875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1886990)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1886990)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIF000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIF000000000.  This version of the
            project (01) has the accession number NZ_JARRIF010000000, and
            consists of sequences JARRIF010000001-JARRIF010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647875.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:00:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,188
            CDSs (total)                      :: 2,128
            Genes (coding)                    :: 2,102
            CDSs (with protein)               :: 2,102
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 6 of 26
            Pseudo Genes (incomplete)         :: 19 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886990
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA33"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIF010000001-JARRIF010000007
WGS_SCAFLD  NZ_JARRIF010000001-NZ_JARRIF010000007
//
LOCUS       NZ_JARRID010000000   2030899 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA31, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRID000000000
VERSION     NZ_JARRID000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962733
            Assembly: GCF_041647945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 2030899)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2030899)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRID000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRID000000000.  This version of the
            project (01) has the accession number NZ_JARRID010000000, and
            consists of sequences JARRID010000001-JARRID010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647945.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 11:59:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,360
            CDSs (total)                      :: 2,299
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 7 of 29
            Pseudo Genes (incomplete)         :: 21 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 2 of 29
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030899
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA31"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRID010000001-JARRID010000012
WGS_SCAFLD  NZ_JARRID010000001-NZ_JARRID010000012
//
LOCUS       NZ_JARRIJ010000000   1939725 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA40, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIJ000000000
VERSION     NZ_JARRIJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962739
            Assembly: GCF_041647855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1939725)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1939725)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIJ000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIJ000000000.  This version of the
            project (01) has the accession number NZ_JARRIJ010000000, and
            consists of sequences JARRIJ010000001-JARRIJ010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647855.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:01:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,283
            CDSs (total)                      :: 2,223
            Genes (coding)                    :: 2,182
            CDSs (with protein)               :: 2,182
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 25 of 41
            Pseudo Genes (incomplete)         :: 17 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939725
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA40"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIJ010000001-JARRIJ010000006
WGS_SCAFLD  NZ_JARRIJ010000001-NZ_JARRIJ010000006
//
LOCUS       NZ_JARRII010000000   1939494 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA39, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRII000000000
VERSION     NZ_JARRII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962738
            Assembly: GCF_041647815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1939494)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1939494)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRII000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRII000000000.  This version of the
            project (01) has the accession number NZ_JARRII010000000, and
            consists of sequences JARRII010000001-JARRII010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647815.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:03:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,287
            CDSs (total)                      :: 2,226
            Genes (coding)                    :: 2,181
            CDSs (with protein)               :: 2,181
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 27 of 45
            Pseudo Genes (incomplete)         :: 18 of 45
            Pseudo Genes (internal stop)      :: 9 of 45
            Pseudo Genes (multiple problems)  :: 8 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939494
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA39"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRII010000001-JARRII010000009
WGS_SCAFLD  NZ_JARRII010000001-NZ_JARRII010000009
//
LOCUS       NZ_JARRIG010000000   2063327 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA34, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIG000000000
VERSION     NZ_JARRIG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962736
            Assembly: GCF_041647915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 2063327)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2063327)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIG000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIG000000000.  This version of the
            project (01) has the accession number NZ_JARRIG010000000, and
            consists of sequences JARRIG010000001-JARRIG010000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647915.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:03:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,395
            CDSs (total)                      :: 2,334
            Genes (coding)                    :: 2,309
            CDSs (with protein)               :: 2,309
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 8 of 25
            Pseudo Genes (incomplete)         :: 16 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063327
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA34"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIG010000001-JARRIG010000010
WGS_SCAFLD  NZ_JARRIG010000001-NZ_JARRIG010000010
//
LOCUS       NZ_JARRIH010000000   1940069 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA38, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIH000000000
VERSION     NZ_JARRIH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962737
            Assembly: GCF_041647925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1940069)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1940069)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIH000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIH000000000.  This version of the
            project (01) has the accession number NZ_JARRIH010000000, and
            consists of sequences JARRIH010000001-JARRIH010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041647925.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:02:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,287
            CDSs (total)                      :: 2,226
            Genes (coding)                    :: 2,184
            CDSs (with protein)               :: 2,184
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 25 of 42
            Pseudo Genes (incomplete)         :: 18 of 42
            Pseudo Genes (internal stop)      :: 8 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940069
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA38"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIH010000001-JARRIH010000006
WGS_SCAFLD  NZ_JARRIH010000001-NZ_JARRIH010000006
//
LOCUS       NZ_JARRIA010000000   1848703 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Pyrococcus kukulkanii strain LMOA25, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARRIA000000000
VERSION     NZ_JARRIA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33962730
            Assembly: GCF_041648035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pyrococcus kukulkanii
  ORGANISM  Pyrococcus kukulkanii
            Archaea; Methanobacteriati; Methanobacteriota; Thermococci;
            Thermococcales; Thermococcaceae; Pyrococcus.
REFERENCE   1  (bases 1 to 1848703)
  AUTHORS   Gu,J.
  TITLE     Speciation in Pyrococcus: adaptation to high temperature as a
            mechanism
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1848703)
  AUTHORS   Gu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) School of Life Science and Biotechnology,
            Shanghai Jiaotong University, Dongchuan Road 800, Shanghai 200240,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRIA000000000.1.
            The Pyrococcus kukulkanii whole genome shotgun (WGS) project has
            the project accession NZ_JARRIA000000000.  This version of the
            project (01) has the accession number NZ_JARRIA010000000, and
            consists of sequences JARRIA010000001-JARRIA010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041648035.1-RS_2025_08_30
            Annotation Date                   :: 08/30/2025 12:03:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,108
            CDSs (total)                      :: 2,047
            Genes (coding)                    :: 2,031
            CDSs (with protein)               :: 2,031
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 6 of 16
            Pseudo Genes (incomplete)         :: 10 of 16
            Pseudo Genes (internal stop)      :: 1 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848703
                     /organism="Pyrococcus kukulkanii"
                     /mol_type="genomic DNA"
                     /strain="LMOA25"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1609559"
                     /geo_loc_name="Mexico: Guaymas Basin"
                     /collection_date="2009-11"
WGS         JARRIA010000001-JARRIA010000003
WGS_SCAFLD  NZ_JARRIA010000001-NZ_JARRIA010000003
//
LOCUS       NZ_SGUA01000000      3622604 bp    DNA     linear   BCT 31-AUG-2025
DEFINITION  Halorubrum sp. ASP1, whole genome shotgun sequencing project.
ACCESSION   NZ_SGUA00000000
VERSION     NZ_SGUA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10910412
            Assembly: GCF_005435135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Halorubrum sp. ASP1
  ORGANISM  Halorubrum sp. ASP1
            Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
            Halobacteria; Halobacteriales; Haloferacaceae; Halorubrum.
REFERENCE   1  (bases 1 to 3622604)
  AUTHORS   Fullmer,M.S., Ouellette,M., Louyakis,A.S., Papke,R.T. and
            Gogarten,J.P.
  TITLE     The Patchy Distribution of RestrictionModification System Genes and
            the Conservation of Orphan Methyltransferases in Halobacteria
  JOURNAL   Genes (Basel) 10 (3), 233 (2019)
   PUBMED   30893937
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3622604)
  AUTHORS   Louyakis,A.S., Gogarten,J.P. and Papke,R.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2019) Microbiology and Cell Science, University
            of Connecticut, 91 North Eagleville Road, Unit 3125, Storrs, CT
            06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SGUA00000000.1.
            The Halorubrum sp. ASP1 whole genome shotgun (WGS) project has the
            project accession NZ_SGUA00000000.  This version of the project
            (01) has the accession number NZ_SGUA01000000, and consists of
            sequences SGUA01000001-SGUA01000104.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 131x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005435135.1-RS_2025_08_31
            Annotation Date                   :: 08/31/2025 08:07:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,736
            CDSs (total)                      :: 3,680
            Genes (coding)                    :: 3,581
            CDSs (with protein)               :: 3,581
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 23 of 99
            Pseudo Genes (incomplete)         :: 79 of 99
            Pseudo Genes (internal stop)      :: 15 of 99
            Pseudo Genes (multiple problems)  :: 15 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3622604
                     /organism="Halorubrum sp. ASP1"
                     /mol_type="genomic DNA"
                     /strain="ASP1"
                     /isolation_source="saturated brine"
                     /db_xref="taxon:2518114"
                     /geo_loc_name="Spain: Huelva"
                     /lat_lon="37.271106 N 6.957887 W"
                     /collection_date="2012"
WGS         SGUA01000001-SGUA01000104
WGS_SCAFLD  NZ_SGUA01000001-NZ_SGUA01000104
//
