FSSP Fold Tree
The FSSP database
The FSSP database includes all protein chains from the Protein Data Bank which are longer than 30 residues. The chains are divided into a representative set and sequence homologs of structures in the representative set. Sequence homologs have more than 25 % sequence identity, and the representative set contains no pair of such sequence homologs. An all-against-all structure comparison is performed on the representative set. The resulting alignments are reported in the FSSP entries for individual chains. In addition, FSSP entries include the structure alignments of the search structure with its sequence homologs.
Reference
L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
Availability
Free academic use. No commercial use. No incorporation into other databases.
This table
is a fold classification of the representative set. A hierarchical clustering method is used to construct a tree based on the structural similarities from the all-against-all comparison. Family indices are constructed by cutting the tree
at levels of 2, 3, 4, 5, 10 and 15 standard deviations above database average. Related tables
PROTEIN INDEX is sorted according to PDB
codes.
See the accompanying README file for additional information.
Hyperlinks
Click on Family index for a summary of aligned pairs. Click on PDB-code for the complete FSSP entry. Click on alignment to view the structural alignments.
Family index PDB-code Alignments compound
1.1.1.1.1.1 1ag7 alignment "conotoxin gs"
2.1.1.1.1.1 1agg alignment "omega-agatoxin-ivb (omega-aga-ivb)"
2.2.1.1.1.1 _1vtx alignment "delta-atracotoxin-hv1 (versutoxin)"
2.2.2.1.1.1 __1boe alignment "insulin-like growth factor-binding protein-5 (igfbp-5) fragment (mini-igfbp-5)"
2.2.3.1.1.1 __1eit alignment "mu-agatoxin-i (mu-aga-i)"
2.2.4.1.1.1 __2gur alignment "gurmarin"
2.3.1.1.1.1 _2cbh alignment "C-terminal domain of cellobiohydrolase i (CT-CBH i) (NMR,41 simulated annealing structures)"
2.4.1.1.1.1 _1lpbA alignment "Lipase complexed with colipase and inhibited by undecane phosphonate methyl ester (two conformations)"
2.4.1.1.2.1 ____1imt alignment "intestinal toxin 1 (mit1)"
3.1.1.1.1.1 1aie alignment "p53 fragment"
4.1.1.1.1.1 1bba alignment "Bovine pancreatic polypeptide (bpp) (NMR, mean structure)"
4.1.2.1.1.1 __1ppt alignment "Avian pancreatic polypeptide"
5.1.1.1.1.1 1emn alignment "fibrillin fragment"
6.1.1.1.1.1 1hcgB alignment "Blood coagulation factor xa"
7.1.1.1.1.1 1pft alignment "tfiib fragment (pftfiibn)"
8.1.1.1.1.1 1qyp alignment "RNA polymerase ii fragment"
8.1.1.2.1.1 ___1tfi alignment "Transcriptional elongation factor sii (tfiis, nucleic-acid binding domain) (NMR, 12 structures)"
9.1.1.1.1.1 1a8o alignment "hiv capsid fragment Mutant biological_unit"
10.1.1.1.1.1 1abz alignment "alpha-t-alpha (ata)"
10.2.1.1.1.1 _1r2aA alignment "camp-dependent protein kinase type ii regulatory chain fragment (riia(1-44)) biological_unit"
11.1.1.1.1.1 1eaf alignment "Dihydrolipoyl transacetylase (catalytic domain (residues 382-637)) complex with hydrogen sulfite"
11.1.1.1.1.1 ______3cla alignment "Type III chloramphenicol acetyltransferase (CAT=III=) complex with chloramphenicol"
12.1.1.1.1.1 1ytbA alignment "Tata-box binding protein (ytbp) complexed with DNA containing tata-box"
12.1.1.2.1.1 ___1bv1 alignment "bet v 1 (major pollen allergen bet v 1-a)"
12.1.1.2.2.1 ____3pmgA alignment "alpha-d-glucose-1,6-bisphosphate (phosphoglucomutase)"
13.1.1.1.1.1 1be3D alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
14.1.1.1.1.1 1c53 alignment "Cytochrome c553"
14.1.1.1.2.1 ____1etpA alignment "cytochrome c4"
14.1.1.1.2.1 ______1fcdC alignment "Flavocytochrome c sulfide dehydrogenase (fcsd)"
14.1.1.2.1.1 ___1cyj alignment "cytochrome c6 (cytochrome c553)"
14.1.1.2.2.1 ____2mtaC alignment "Methylamine dehydrogenase complex with amicyanin and cytochrome c551i"
14.1.1.2.3.1 ____1c52 alignment "cytochrome-c552"
14.1.1.2.4.1 ____451c alignment "Cytochrome c=551= (reduced)"
14.1.1.2.5.1 ____1ycc alignment "Cytochrome c (isozyme 1) (reduced)"
14.1.1.2.6.1 ____1cc5 alignment "Cytochrome c=5= (oxidized)"
15.1.1.1.1.1 1mli alignment "Muconolactone isomerase"
15.2.1.1.1.1 _8atcB alignment "Aspartate carbamoyltransferase (aspartate transcarbamylase) (r state) complex with n-phosphonacetyl-l-aspartate (PALA)"
15.2.2.1.1.1 __2tbd alignment "sv40 t antigen fragment"
15.2.2.2.1.1 ___2bopA alignment "Bovine papillomavirus-1 e2 (DNA-binding domain) (residues 325 - 410) complexed with DNA"
15.2.2.2.2.1 ____1b3tA alignment "ebna1 fragment (ebna-1 nuclear protein) ebna1 fragment (ebna_1 nuclear protein) DNA DNA"
15.2.2.2.3.1 ____2pii alignment "pii (glnb product)"
15.2.3.1.1.1 __2u1a alignment "u1 small nuclear ribonucleoprotein a fragment (u1 snrnp a protein) Mutant"
15.2.3.1.2.1 ____1ha1 alignment "hnrnp a1 fragment (heterogeneous nuclear ribonucleoprotein a1, hnrnp a1 1-184)"
15.2.3.1.2.2 _____3sxlA alignment "sex-lethal fragment"
15.2.3.1.2.3 _____1urnA alignment "u1a spliceosomal protein fragment Mutant RNA 21mer hairpin (5'-(apApUpCpCpApUpUp* gpCpApCpUpCpCpGpGpApUpUpU)-3')"
15.2.4.1.1.1 __1scjB alignment "subtilisin e (serine protease) Mutant"
15.2.4.2.1.1 ___1ris alignment "Ribosomal protein s6"
15.2.4.2.2.1 ____2acy alignment "acylphosphatase (acp) biological_unit"
15.2.4.2.3.1 ____1aw0 alignment "menkes copper-transporting atpase fragment"
15.2.4.3.1.1 ___1mla alignment "malonyl-coenzyme a acyl carrier protein transacylase (malonyl-coa acp transacylase)"
15.2.4.3.2.1 ____1pytA alignment "procarboxypeptidase a proproteinase e chymotrypsinogen c (tc, pcpa-tc) biological_unit"
15.2.4.3.3.1 ____1ftrA alignment "formylmethanofuran:tetrahydromethanopterin formyltransferase (ftr) biological_unit"
15.2.5.1.1.1 __1npk alignment "Nucleoside diphosphate kinase"
15.3.1.1.1.1 _1eayC alignment "chey chea fragment"
16.1.1.1.1.1 1ctf alignment "L7/L12 50 s ribosomal protein (c-terminal domain)"
16.1.1.2.1.1 ___1ptf alignment "Histidine-containing phosphocarrier protein (hpr)"
16.2.1.1.1.1 _1rl6A alignment "ribosomal protein l6 biological_unit"
16.2.2.1.1.1 __1vih alignment "vigilin fragment"
16.2.2.2.1.1 ___2fmr alignment "fmr1 protein fragment (kh1)"
17.1.1.1.1.1 1xnb alignment "Xylanase (endo-1,4-beta-xylanase)"
17.1.2.1.1.1 __1ulo alignment "endoglucanase c fragment (cenc, endo-1,4-beta-glucanase c)"
17.1.2.2.1.1 ___1a3k alignment "galectin-3 fragment"
17.1.2.2.1.1 ______1lcl alignment "lysophospholipase (charcot-leyden crystal protein)"
17.1.2.2.1.1 ______1sltA alignment "S-lectin (a vertebrate 14 kda beta-galactoside binding protein) complex with n-acetyllactosamine"
17.1.2.2.2.1 ____1led alignment "Lectin (fourth isolated from (griffonia simplicifolia)) complex with lewis b human blood group determinant (gs4leb)"
17.1.2.2.2.2 _____2ayh alignment "1,3-1,4-beta-d-glucan 4 glucanohydrolase (beta-glucanase, lichenase) complexed with calcium (synchrotron x-ray diffraction)"
17.1.2.2.2.3 _____1celA alignment "1,4-beta-d-glucan cellobiohydrolase i (cellulase)"
17.1.2.2.3.1 ____1sacA alignment "Serum amyloid p component (sap)"
17.2.1.1.1.1 _1dhx alignment "adenovirus type 2 hexon (adenovirus type 2 polypeptide ii)"
17.2.2.1.1.1 __1nls alignment "concanavalin a biological_unit"
18.1.1.1.1.1 1vpsA alignment "polyomavirus vp1 pentamer biological_unit"
18.1.2.1.1.1 __1pgs alignment "Peptide-n(4)-(n-acetyl-beta-d-glucosaminyl) asparagine amidase (n-glycosidase f) (png-ase f)"
18.1.2.1.2.1 ____1phm alignment "peptidylglycine alpha-hydroxylating monooxygenase (peptidylglycine monooxygenase, peptidylglycine 2-hydroxylase, phm) biological_unit"
18.2.1.1.1.1 _1auyA alignment "turnip yellow mosaic virus (tymv) biological_unit"
18.2.1.1.1.2 _____1smvA alignment "sesbania mosaic virus coat protein"
18.2.1.1.1.2 ______2tbvA alignment "Tomato bushy stunt virus"
18.2.1.1.2.1 ____1aym2 alignment "human rhinovirus 16 coat protein (hrv16) Mutant biological_unit"
18.2.1.1.2.1 ______1fhp2 alignment "polg_fmdvo fragment (fmdv)"
18.2.1.1.2.2 _____1aym3 alignment "human rhinovirus 16 coat protein (hrv16) Mutant biological_unit"
18.2.1.1.2.2 ______1fhp3 alignment "polg_fmdvo fragment (fmdv)"
18.2.1.1.2.3 _____1a6cA alignment "tobacco ringspot virus capsid protein (trsv) biological_unit"
18.2.1.1.2.3 ______1bmv2 alignment "Bean pod mottle virus (middle component)"
18.2.1.1.3.1 ____2mev1 alignment "Mengo encephalomyocarditis virus coat protein"
18.2.1.1.3.2 _____1fhp1 alignment "polg_fmdvo fragment (fmdv)"
18.2.1.1.3.3 _____1aym1 alignment "human rhinovirus 16 coat protein (hrv16) Mutant biological_unit"
18.2.1.1.3.3 ______1pov1 alignment "poliovirus native empty capsid (type 1)"
18.2.1.1.4.1 ____2stv alignment "Satellite tobacco necrosis virus"
18.2.1.1.5.1 ____1a34A alignment "satellite tobacco mosaic virus (stmv) RNA"
18.2.1.1.5.2 _____1stmA alignment "satellite panicum mosaic virus (spmv)"
18.2.1.1.6.1 ____1bmv1 alignment "Bean pod mottle virus (middle component)"
18.2.1.1.7.1 ____1cwpA alignment "cowpea chlorotic mottle virus (ccmv) RNA (5'-(apUpApU)-3') RNA (5'-(apU)-3')"
18.2.2.1.1.1 __2bbvA alignment "Black beetle virus capsid protein (bbv) complexed with duplex RNA"
18.2.2.1.2.1 ____2cas alignment "Canine parvovirus empty capsid (strain d) viral protein 2"
18.2.2.1.2.2 _____1dnv alignment "galleria mellonella densovirus capsid protein biological_unit"
18.2.3.1.1.1 __1sfp alignment "asfp (acidic seminal protein)"
18.2.3.1.2.1 ____2bpa2 alignment "Bacteriophage phix174 capsid proteins gpf, gpg, gpj and four nucleotides"
18.2.3.2.1.1 ___2bpa1 alignment "Bacteriophage phix174 capsid proteins gpf, gpg, gpj and four nucleotides"
18.2.3.2.2.1 ____1aly alignment "cd40 ligand fragment"
18.2.3.2.2.1 ______4tsvA alignment "tumor necrosis factor-alpha Mutant biological_unit"
18.3.1.1.1.1 _1hgeA alignment "Hemagglutinin (bromelain digested) mutant with gly 135 replaced by arg (g135r) in ha1 chains complex with alpha-2-o-methyl-5-n-acetyl-alpha-d-neuraminic acid"
19.1.1.1.1.1 1ica alignment "Insect defensin a (NMR, 10 structures)"
20.1.1.1.1.1 1cmr alignment "charybdotoxin, alpha chimera Mutant"
20.2.1.1.1.1 _2pta alignment "pandinus toxin k-alpha fragment (pitx-ka, a-ktx5.1) biological_unit"
20.3.1.1.1.1 _1sco alignment "scorpion toxin osk1 (lenatoxin)"
20.3.2.1.1.1 __1aho alignment "toxin ii"
20.3.2.2.1.1 ___1ayj alignment "antifungal protein 1 (rs-afp1)"
20.3.2.2.2.1 ____1gpt alignment "Gamma-1-h thionin (NMR, 8 structures)"
20.3.2.3.1.1 ___1brz alignment "brazzein biological_unit"
20.4.1.1.1.1 _1pnh alignment "Scorpion toxin (po5-nh2) analog with high affinity for apamin-sensitive potassium channel (NMR, 25 structures)"
21.1.1.1.1.1 2cps alignment "m13 major coat protein (m13 gene-viii-protein or m13 gviiip)"
21.2.1.1.1.1 _1be3G alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
22.1.1.1.1.1 1lyp alignment "Cap18 (residues 106 - 137) (NMR, minimized best structure)"
22.2.1.1.1.1 _1ce9B alignment "gcn4-pmse Mutant"
22.2.2.1.1.1 __1tiiC alignment "heat labile enterotoxin type iib (lt-iib)"
22.2.2.2.1.1 ___1wfbA alignment "Antifreeze protein isoform hplc6 (-180 degrees c)"
22.2.2.3.1.1 ___1bb1A alignment "designed, thermostable heterotrimeric coiled coil"
22.2.2.4.1.1 ___1ce0A alignment "leucine zipper model h38-p1 biological_unit"
22.2.2.5.1.1 ___2sivA alignment "siv gp41 glycoprotein fragment (n36C34 CORE) biological_unit"
22.2.2.6.1.1 ___1kzuB alignment "light harvesting protein b-800850 (lh2)"
22.2.2.7.1.1 ___1lghB alignment "light harvesting complex ii (lh ii, b800850) biological_unit"
22.2.2.8.1.1 ___2sivB alignment "siv gp41 glycoprotein fragment (n36C34 CORE) biological_unit"
22.2.3.1.1.1 __1a93A alignment "c-myc-max fragment (coiled coil, lz) biological_unit"
22.2.3.2.1.1 ___1a93B alignment "c-myc-max fragment (coiled coil, lz) biological_unit"
22.2.4.1.1.1 __1a2xB alignment "troponin c biological_unit troponin i fragment"
22.2.4.2.1.1 ___1gcmA alignment "gcn4p-ii (general control protein gcn4, amino acid biosynthesis regulatory protein) Mutant"
22.2.5.1.1.1 __1afoA alignment "glycophorin a fragment"
22.2.6.1.1.1 __1spf alignment "Pulmonary surfactant-associated polypeptide c(sp-c) (NMR, 20 structures)"
22.2.7.1.1.1 __1bde alignment "vpr protein fragment"
22.3.1.1.1.1 _1mof alignment "moloney murine leukemia virus p15 fragment residues 45 - 98; Mutant"
22.4.1.1.1.1 _1wdcA alignment "scallop myosin fragment"
22.4.1.2.1.1 ___1fosE alignment "C-jun proto-oncogene (transcription factor ap-1) dimerized with c-fos and complexed with DNA"
22.4.1.2.1.1 ______1fosF alignment "C-jun proto-oncogene (transcription factor ap-1) dimerized with c-fos and complexed with DNA"
22.4.1.2.1.1 ______1sfcA alignment "synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-25b fragment snap-25b fragment"
22.4.1.2.1.1 ______1sfcB alignment "synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-25b fragment snap-25b fragment"
22.4.1.2.1.1 ______1sfcC alignment "synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-25b fragment snap-25b fragment"
22.4.1.2.1.1 ______1sfcD alignment "synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-25b fragment snap-25b fragment"
22.4.1.2.1.1 ______1sfcE alignment "synaptobrevin 2 fragment (vamp 2) syntaxin 1a fragment snap-25b fragment snap-25b fragment"
22.4.1.2.1.1 ______1svfA alignment "sv5 fusion protein fragment sv5 fusion protein fragment Mutant biological_unit"
22.4.1.2.2.1 ____1aa0 alignment "fibritin fragment (gpwac e) biological_unit"
22.4.1.3.1.1 ___1a02F alignment "nfat fragment (nf-at) biological_unit c-fos Mutant c-jun Mutant DNA"
22.4.1.3.1.1 ______1a02J alignment "nfat fragment (nf-at) biological_unit c-fos Mutant c-jun Mutant DNA"
22.4.1.3.1.1 ______1ifi alignment "Inovirus (filamentous bacteriophage) strain fd major coat protein assembly in the canonical symmetry (fiber diffraction)"
22.4.1.3.1.1 ______2dgcA alignment "gcn4 fragment atfCREB SITE DNA"
22.4.1.4.1.1 ___1av1A alignment "apolipoprotein a-i fragment (apo a-i) Mutant"
22.4.1.5.1.1 ___2spcA alignment "Spectrin (one repeat unit)"
22.4.2.1.1.1 __2ifm alignment "pf1 filamentous bacteriophage (pf1 inovirus)"
22.4.2.2.1.1 ___2ifo alignment "Inovirus (filamentous bacteriophage) strain xf major coat protein assembly in the canonical assembly (fiber diffraction)"
22.4.2.3.1.1 ___1junA alignment "c-jun homodimer fragment (junlz, junp1n) Mutant"
22.4.2.4.1.1 ___1ifp alignment "major coat protein assembly (pf3 inovirus)"
22.4.2.5.1.1 ___1vdfA alignment "cartilage oligomeric matrix protein fragment (comp) biological_unit"
22.4.2.6.1.1 ___1pfiA alignment "Major coat protein of pf1 virus (model for pf1 virus) complexed with circular single-stranded DNA of pf1 virus g8p (fiber diffraction)"
22.4.3.1.1.1 __1an2A alignment "max protein fragment (myn protein) biological_unit DNA"
22.4.3.2.1.1 ___1dkgA alignment "nucleotide exchange factor grpe Mutant molecular chaperone dnak fragment Mutant"
22.4.4.1.1.1 __1aq5A alignment "cartilage matrix protein fragment (matrilin-1, cmp) Mutant biological_unit"
22.4.5.1.1.1 __2cpb alignment "m13 major coat protein (m13 gene-viii-protein or m13 gviiip)"
22.4.6.1.1.1 __2occI alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
22.4.7.1.1.1 __1avoA alignment "11s regulator (reg(alpha), pa28(alpha)) biological_unit"
22.5.1.1.1.1 _1be3J alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
22.6.1.1.1.1 _1kzuA alignment "light harvesting protein b-800850 (lh2)"
22.6.1.2.1.1 ___1lghA alignment "light harvesting complex ii (lh ii, b800850) biological_unit"
22.7.1.1.1.1 _1bct alignment "Bacteriorhodopsin (fragment 163-231) (NMR, 14 structures)"
22.8.1.1.1.1 _1bgyE alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
22.9.1.1.1.1 _1ltaC alignment "Heat-labile enterotoxin (lt) complex with galactose"
22.9.2.1.1.1 __1ltsC alignment "Heat-labile enterotoxin (lt)"
23.1.1.1.1.1 2rslA alignment "Gamma delta resolvase (large fragment, catalytic domain)"
23.2.1.1.1.1 _1ad2 alignment "ribosomal protein l1 (tl2) Mutant"
23.2.1.2.1.1 ___1pdo alignment "mannose permease fragment (mannose transporter, iiab subunit)"
24.1.1.1.1.1 2bgu alignment "beta-glucosyltransferase"
24.1.1.1.1.2 _____1a8i alignment "glycogen phosphorylase b biological_unit"
24.1.1.1.1.2 ______1ahpA alignment "e.Coli maltodextrin phosphorylase (malp) Mutant biological_unit"
24.1.2.1.1.1 __3pfk alignment "Phosphofructokinase"
24.1.2.1.2.1 ____4pgaA alignment "glutaminase-asparaginase biological_unit"
24.1.2.2.1.1 ___1rvv1 alignment "riboflavin synthase"
24.1.2.2.2.1 ____1pea alignment "amidase operon fragment"
24.1.2.2.2.1 ______2liv alignment "Leucine/Isoleucine/Valine-binding protein (LIVBP)"
24.1.2.2.2.2 _____1dbqA alignment "purine repressor fragment"
24.1.2.2.2.2 ______1gca alignment "GlucoseGALACTOSE-BINDING PROTEIN COMPLEX WITH GALACTOSE"
24.1.2.2.2.2 ______1tlfA alignment "Tryptic core fragment of the lactose repressor of escherichia coli"
24.1.2.2.2.2 ______2dri alignment "D-ribose-binding protein complexed with beta-d-ribose"
24.1.2.2.2.2 ______8abp alignment "L-Arabinose-binding protein (mutant with met 108 replaced by leu) (M108L) complex with d-Galactose"
24.1.2.2.2.2 ______1bykA alignment "trehalose operon repressor fragment"
24.1.2.2.3.1 ____1fuiA alignment "l-fucose isomerase biological_unit"
24.1.2.2.4.1 ____1scuA alignment "Succinyl-coa synthetase (succinate-coa ligase) (adp-forming)"
24.1.2.2.4.2 _____1scuB alignment "Succinyl-coa synthetase (succinate-coa ligase) (adp-forming)"
24.1.2.2.5.1 ____1bmtA alignment "Methionine synthase (b12-binding domains)"
24.1.2.2.5.2 _____1reqA alignment "methylmalonyl-coa mutase"
24.1.2.2.5.2 ______1reqB alignment "methylmalonyl-coa mutase"
24.1.2.2.5.3 _____1a04A alignment "nitrateNITRITE RESPONSE REGULATOR PROTEIN NARL fragment"
24.1.2.2.5.3 ______3chy alignment "CheY"
24.1.2.2.5.3 ______1srrA alignment "sporulation response regulatory protein (spo0f) Mutant"
24.1.2.2.6.1 ____1ak1 alignment "ferrochelatase (protoheme ferro-lyase)"
24.1.2.2.7.1 ____1iibA alignment "enzyme iib of the cellobiose-specific phosphotransferase system fragment Mutant biological_unit"
24.1.2.2.8.1 ____1phr alignment "low molecular weight phosphotyrosine protein phosphotase"
24.1.2.2.9.1 ____1be1 alignment "glutamate mutase fragment (muts)"
24.1.2.2.*.1 ____1moq alignment "glucosamine 6-phosphate synthase (l-glutamine:d-fructose-6p amidotransferase)"
24.1.2.2.*.1 ____1gci alignment "bacillus lentus subtilisin biological_unit"
24.1.2.3.1.1 ___1atzA alignment "von willebrand factor fragment"
24.1.2.3.1.1 ______1ido alignment "integrin fragment (a-domain)"
24.1.2.3.1.1 ______1auq alignment "a1 domain of von willebrand factor fragment"
24.1.2.3.1.1 ______1aoxA alignment "integrin alpha 2 beta fragment"
24.1.2.4.1.1 ___1a4iA alignment "methylenetetrahydrofolate dehydrogenase methenyltetrahydrofolate cyclohydrolase (methylenethf dehydrogenase METHENYLTHF cyclohydrolase) biological_unit"
24.1.2.4.1.2 _____2otcA alignment "ornithine carbamoyltransferase (otcase, l-ornithine carbamoyl phosphate transferase) biological_unit"
24.1.2.4.1.2 ______8atcA alignment "Aspartate carbamoyltransferase (aspartate transcarbamylase) (r state) complex with n-phosphonacetyl-l-aspartate (PALA)"
24.1.2.4.2.1 ____1b3rA alignment "s-adenosylhomocysteine hydrolase fragment Mutant biological_unit"
24.1.2.4.2.2 _____1dxy alignment "d-2-hydroxyisocaproate dehydrogenase (d-hicdh, r-hicdh, r-2-hydroxyisocaproate dehydrogenase) biological_unit"
24.1.2.4.2.2 ______1gdhA alignment "D-glycerate dehydrogenase (apo form)"
24.1.2.4.2.2 ______1psdA alignment "D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)"
24.1.2.4.2.2 ______2nadA alignment "Nad-dependent formate dehydrogenase (holo form) complexed with nad and azide"
24.1.2.4.2.3 _____1lehA alignment "leucine dehydrogenase biological_unit"
24.1.2.4.2.3 ______1k89 alignment "glutamate dehydrogenase Mutant biological_unit"
24.1.2.4.2.3 ______1ch6A alignment "glutamate dehydrogenase (glutamic dehydrogenase) biological_unit"
24.1.2.4.3.1 ____1bdb alignment "cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase biological_unit"
24.1.2.4.3.1 ______1cydA alignment "carbonyl reductase"
24.1.2.4.3.1 ______1dhr alignment "Dihydropteridine reductase (dhpr) complex with nadh"
24.1.2.4.3.1 ______1enp alignment "enoyl acyl carrier protein reductase Mutant"
24.1.2.4.3.1 ______1eny alignment "enoyl-acyl carrier protein (acp) reductase (inha)"
24.1.2.4.3.1 ______1xel alignment "udp-galactose 4-epimerase"
24.1.2.4.3.1 ______1bxkA alignment "dtdp-glucose 4,6-dehydratase biological_unit"
24.1.2.4.3.1 ______1bwsA alignment "gdp-4-keto-6-deoxy-d-mannose epimeraseREDUCTASE biological_unit"
24.1.2.4.3.1 ______1equ alignment "dhes_human biological_unit"
24.1.2.4.3.1 ______1ybvA alignment "trihydroxynaphthalene reductase (naphthol reductase) Mutant"
24.1.2.4.3.1 ______1a4uA alignment "alcohol dehydrogenase biological_unit"
24.1.2.4.3.1 ______1oaa alignment "sepiapterin reductase biological_unit"
24.1.2.4.4.1 ____1dpgA alignment "glucose 6-phosphate dehydrogenase (g6pd) Mutant biological_unit"
24.1.2.4.4.1 ______1ofgA alignment "glucose-fructose oxidoreductase"
24.1.2.4.4.2 _____1dapA alignment "diaminopimelic acid dehydrogenase (dapdh)"
24.1.2.4.4.2 ______1drw alignment "dihydrodipicolinate reductase (dhpr, dapb)"
24.1.2.4.5.1 ____1bmdA alignment "Malate dehydrogenase (bacterial) complexed with nadh"
24.1.2.4.5.1 ______1hyhA alignment "l-2-hydroxyisocaproate dehydrogenase (l-hicdh)"
24.1.2.4.5.1 ______2cmd alignment "Malate dehydrogenase"
24.1.2.4.5.1 ______1ceqA alignment "l-lactate dehydrogenase biological_unit"
24.1.2.4.5.1 ______3ldh alignment "Lactate dehydrogenase m4 enzyme, ternary complex with NAD and pyruvate"
24.1.2.4.6.1 ____1pedA alignment "nadp-dependent alcohol dehydrogenase"
24.1.2.4.6.1 ______1qorA alignment "Quinone oxidoreductase complexed with nadph"
24.1.2.4.6.1 ______2ohxA alignment "Alcohol dehydrogenase (holo form) complex with nadh and dmso"
24.1.2.4.7.1 ____1rkd alignment "ribokinase biological_unit"
24.1.2.4.8.1 ____1uag alignment "udp-n-acetylmuramoyl-l-alanine:D-GLUTAMATE ligase (murd)"
24.1.2.4.9.1 ____1dssG alignment "d-glyceraldehyde-3-phosphate-dehydrogenase fragment"
24.1.2.4.*.1 ____1yveI alignment "acetohydroxy acid isomeroreductase (ketoacid reductoisomerase)"
24.1.2.4.*.2 _____2pgd alignment "6-phosphogluconate dehydrogenase (6-pgdh)"
24.1.2.4.*.2 ______1bg6 alignment "n-(1-d-carboxylethyl)-l-norvaline dehydrogenase biological_unit"
24.1.2.4.*.1 ____2masA alignment "inosine-uridine nucleoside n-ribohydrolase (purine nucleoside hydrolase, inosine-uridine nucleosidase, iu-nh) Mutant"
24.1.2.4.*.1 ____1fmtA alignment "methionyl-trna fmet formyltransferase (10-formyltetrahydrofolate l-methionyl trnafmet formyltransferase) biological_unit"
24.1.2.4.*.1 ______2gar alignment "glycinamide ribonucleotide transformylase (gartfase) Mutant biological_unit"
24.1.2.4.*.1 ____1ad3A alignment "aldehyde dehydrogenase (class 3) (aldh) biological_unit"
24.1.2.4.*.1 ______1a4sA alignment "betaine aldehyde dehydrogenase (aldh) biological_unit"
24.1.3.1.1.1 __1bncA alignment "biotin carboxylase"
24.1.3.1.1.1 ______1gso alignment "glycinamide ribonucleotide synthetase (purd gen product) Mutant biological_unit"
24.1.3.1.1.2 _____1auvA alignment "synapsin ia fragment"
24.1.3.1.1.2 ______1gsa alignment "glutathione synthetase (gamma-l-glutamyl-l-cysteine:glycine ligase (adp-forming))"
24.1.3.1.1.2 ______2dln alignment "d-alanine--d-alanine ligase"
24.1.4.1.1.1 __2frvA alignment "periplasmic hydrogenase (cytochrome-c3 hydrogenase) biological_unit"
24.1.5.1.1.1 __1iso alignment "isocitrate dehydrogenase (oxalosuccinate decarboxylase, idh) Mutant"
24.1.5.1.1.1 ______1xaa alignment "3-isopropylmalate dehydrogenase (ipmdh, imdh)"
24.1.5.2.1.1 ___1chd alignment "cheb methylesterase"
24.1.5.2.2.1 ____1cf9A alignment "catalase hpii Mutant biological_unit"
24.1.5.2.3.1 ____1b93A alignment "methylglyoxal synthase biological_unit"
24.1.6.1.1.1 __1aq6A alignment "l-2-haloacid dehalogenase biological_unit"
24.1.6.2.1.1 ___1fsz alignment "ftsz (sulb)"
24.1.6.2.1.1 ______1tubA alignment "tubulin biological_unit"
24.1.6.2.2.1 ____1nbaA alignment "N-carbamoylsarcosine amidohydrolase"
24.1.6.2.2.1 ______1yacA alignment "ycac gene product (ycacgp) biological_unit"
24.1.7.1.1.1 __1lbeA alignment "adp ribosyl cyclase (cyclase, nadase)"
24.1.7.2.1.1 ___1bvyF alignment "cytochrome p450 bm-3 fragment"
24.1.7.2.2.1 ____1qrdA alignment "quinone-reductase (dt-diaphorase)"
24.1.7.2.2.2 _____1rcf alignment "Flavodoxin complexed with flavin mononucleotide (fmn)"
24.1.7.2.2.2 ______5nul alignment "flavodoxin Mutant biological_unit"
24.1.7.3.1.1 ___1adeA alignment "adenylosuccinate synthetase"
24.1.7.3.2.1 ____1dai alignment "dethiobiotin synthetase (dtbs)"
24.1.7.3.2.2 _____1ffh alignment "ffh fragment"
24.1.7.3.2.3 _____1cp2A alignment "nitrogenase iron protein (cp2) biological_unit"
24.1.7.3.3.1 ____1hurA alignment "human adp-ribosylation factor 1 (harf1, arf1, marf1)"
24.1.7.3.3.2 _____1cipA alignment "guanine nucleotide-binding protein alpha-1 subunit (gia1, guanine nucleotide-binding protein g(i), alpha-1 subunit) biological_unit"
24.1.7.3.3.3 _____1mh1 alignment "rac1 fragment Mutant biological_unit"
24.1.7.3.3.3 ______1byuA alignment "ran fragment (tc4)"
24.1.7.3.3.4 _____1dar alignment "elongation factor g (ef-g)"
24.1.7.3.3.4 ______1efcA alignment "elongation factor (eftu) biological_unit"
24.1.7.3.4.1 ____1esc alignment "esterase"
24.1.7.3.4.2 _____1wab alignment "platelet-activating factor acetylhydrolase (paf-ah)"
24.2.1.1.1.1 _1pauA alignment "apopain (caspase-3, cpp32, yama) ace-asp-glu-val-asp-cho"
24.2.2.1.1.1 __1amoA alignment "nadph-cytochrome p450 reductase fragment (cpr, p450r)"
24.2.2.1.1.1 ______1fdr alignment "flavodoxin reductase (ferredoxin reductase) Mutant biological_unit"
24.2.2.1.1.1 ______1fnc alignment "Ferredoxin:nadp+ oxidoreductase (ferredoxin reductase, flavoenzyme) (dithionite-reduced)"
24.2.2.1.1.1 ______1ndh alignment "Cytochrome b=5= reductase"
24.2.2.1.1.1 ______2pia alignment "Phthalate dioxygenase reductase (e.C.1.18.1.)"
24.2.3.1.1.1 __2dpm alignment "adenine-specific methyltransferase dpnii 1 (m.Dpnii) biological_unit"
24.2.3.1.2.1 ____1vid alignment "catechol o-methyltransferase (comt)"
24.2.3.1.2.2 _____1xvaA alignment "glycine n-methyltransferase (gnmt, s-adenosyl-l-methionine biological_unit"
24.2.3.1.2.3 _____1af7 alignment "chemotaxis receptor methyltransferase cher biological_unit"
24.2.3.1.2.4 _____2admA alignment "adenine-n6-DNA-methyltransferase taqi"
24.2.3.1.3.1 ____6mhtA alignment "cytosine-specific methyltransferase hhai biological_unit DNA"
24.2.3.1.4.1 ____1v39 alignment "vp39 (poly(a) polymerase regulatory subunit) Mutant biological_unit"
24.2.3.1.5.1 ____2ercA alignment "rrna methyl transferase fragment (ermc') biological_unit"
24.3.1.1.1.1 _1bu8 alignment "pancreatic lipase related protein 2"
24.3.1.1.1.2 _____1yge alignment "lipoxygenase-1 (l-1)"
24.3.1.1.1.2 ______1lox alignment "15-lipoxygenase (15lox) biological_unit"
24.4.1.1.1.1 _3tgl alignment "Triacylglycerol acylhydrolase"
24.4.1.2.1.1 ___1cex alignment "cutinase"
24.4.1.2.2.1 ____1cvl alignment "triacylglycerol hydrolase"
24.4.1.2.2.2 _____1tca alignment "Lipase (triacylglycerol hydrolase)"
24.4.1.2.2.3 _____1thg alignment "Lipase triacylglycerol hydrolase"
24.4.1.2.2.3 ______2bce alignment "cholesterol esterase (bile salt activated lipase, bile salt stimulated lipase) Mutant"
24.4.1.2.2.3 ______1jkmA alignment "brefeldin a esterase"
24.4.1.2.2.4 _____1auoA alignment "carboxylesterase biological_unit"
24.4.1.2.2.4 ______1din alignment "dienelactone hydrolase (dlh)"
24.4.1.2.2.4 ______1jfrA alignment "lipase"
24.4.1.2.2.4 ______1thtA alignment "Thioesterase"
24.4.1.2.2.5 _____1ac5 alignment "kex1(delta)p"
24.4.1.2.2.5 ______1brt alignment "bromoperoxidase a2 (haloperoxidase a2, chloroperoxidase a2) Mutant"
24.4.1.2.2.5 ______1ivyA alignment "human protective protein (protective proteinCATHEPSIN A, carboxypeptidase l) biological_unit"
24.4.1.2.2.5 ______1yasA alignment "hydroxynitrile lyase (oxynitrile lyase) histidine"
24.4.1.2.2.5 ______1be0 alignment "haloalkane dehalogenase Mutant biological_unit"
24.4.1.2.2.5 ______1azwA alignment "proline iminopeptidase"
24.5.1.1.1.1 _1gnd alignment "guanine nucleotide dissociation inhibitor"
24.5.1.1.1.2 _____1an9A alignment "d-amino acid oxidase biological_unit"
24.5.1.1.1.2 ______1fohA alignment "phenol hydroxylase biological_unit"
24.5.1.1.1.2 ______1pbe alignment "P-hydroxybenzoate hydroxylase (phbh) complexed with p-hydroxybenzoic acid"
24.5.1.1.1.3 _____1b4v alignment "cholesterol oxidase biological_unit"
24.5.1.1.1.3 ______1cf3A alignment "glucose oxidase biological_unit"
24.5.1.1.1.4 _____1fcdA alignment "Flavocytochrome c sulfide dehydrogenase (fcsd)"
24.5.1.1.1.4 ______1nhp alignment "Nadh peroxidase (npx) mutant with cys 42 replaced by ala (c42a)"
24.5.1.1.1.4 ______1trb alignment "Thioredoxin reductase mutant with cys 138 replaced by ser (c138s)"
24.5.1.1.1.4 ______3grs alignment "Glutathione reductase , oxidized form (e)"
24.5.1.1.1.4 ______1lvl alignment "Dihydrolipoamide dehydrogenase complex with nicotinamide-adenine-dinucleotide (nad+)"
24.6.1.1.1.1 _2minA alignment "nitrogenase molybdenum iron protein biological_unit"
24.6.1.1.1.1 ______3minB alignment "nitrogenase molybdenum iron protein biological_unit"
24.7.1.1.1.1 _2pth alignment "peptidyl-trna hydrolase biological_unit"
24.7.1.1.2.1 ____1a2zA alignment "pyrrolidone carboxyl peptidase (pyroglutamyl aminopeptidase) biological_unit"
24.7.1.1.2.2 _____1ecpA alignment "purine nucleoside phosphorylase"
24.7.1.1.2.2 ______1b8oA alignment "purine nucleoside phosphorylase biological_unit"
24.7.1.1.3.1 ____1lam alignment "leucine aminopeptidase (cytosolic aminopeptidase)"
24.7.1.1.3.2 _____1amp alignment "Aminopeptidase (aeromonas proteolytica)"
24.7.1.1.3.2 ______1cg2A alignment "carboxypeptidase g2 biological_unit"
24.7.1.1.3.2 ______1xjo alignment "aminopeptidase (sgap)"
24.7.1.1.3.3 _____1aye alignment "procarboxypeptidase a2 (pcpa2) biological_unit"
25.1.1.1.1.1 1ignA alignment "rap1 fragment (grf1, tba, tuf, n1310, sbf-e) DNA (5'-d(ccgcacacccacacaccag)-3')"
26.1.1.1.1.1 1fipA alignment "Fis protein (factor for inversion stimulation) mutant with pro 61 replaced by ala (p61a)"
26.1.2.1.1.1 __1ret alignment "Gamma delta resolvase (DNA binding domain) (NMR, 17 structures)"
26.2.1.1.1.1 _1hcrA alignment "Hin recombinase (DNA-binding domain) complexed with DNA"
26.2.2.1.1.1 __1b72A alignment "homeobox protein hox-b1 fragment Mutant biological_unit pbx1 fragment DNA (5'-d(ApCpTpCpTpApTpGpApTpTpGpApTpCpGpGpC pTpG)-3') biological_unit DNA (5'-d(TpCpApGpCpCpGpApTpCpApApTpCpApTpApG pApG)-3') biological_unit"
26.2.2.2.1.1 ___1pdnC alignment "prd paired domain DNA"
26.2.2.2.2.1 ____1tc3C alignment "DNA tc3 transposase fragment Mutant"
26.2.2.2.3.1 ____1mbe alignment "myb proto-oncogene protein engineered"
26.2.2.3.1.1 ___1a5j alignment "b-myb fragment"
26.2.2.3.2.1 ____1ba5 alignment "htrf1 fragment (telomeric repeat binding factor 1)"
26.2.2.4.1.1 ___1akhA alignment "mating-type protein a-1 mating-type protein alpha-2 (mat alpha-2) DNA"
26.2.2.4.2.1 ____2hddA alignment "engrailed homeodomain Mutant biological_unit DNA (20-mer)"
26.2.2.4.2.2 _____1au7A alignment "pit-1 fragment (ghf-1) Mutant biological_unit DNA"
26.2.2.4.3.1 ____1lfb alignment "Transcription factor lfb1 (homeodomain)"
26.2.2.4.4.1 ____1akhB alignment "mating-type protein a-1 mating-type protein alpha-2 (mat alpha-2) DNA"
26.2.3.1.1.1 __1bw6 alignment "centromere protein b fragment"
26.2.4.1.1.1 __1jhgA alignment "trp operon repressor Mutant biological_unit trp biological_unit"
26.2.4.2.1.1 ___2ezk alignment "transposase fragment"
27.1.1.1.1.1 1yuiA alignment "gaga-factor fragment deoxyribonucleic acid"
28.1.1.1.1.1 1bbo alignment "Human enhancer-binding protein mbp-1 mutant with cys 11 replaced by abu (c11abu) (NMR, 60 structures)"
28.1.1.2.1.1 ___1aayA alignment "zif268 zinc finger peptide fragment (ngfi-a, krox-24, egr1) biological_unit duplex oligonucleotide binding site"
28.1.1.2.2.1 ____2gliA alignment "zinc finger protein gli1 (five-finger gli) DNA"
28.1.1.2.3.1 ____1tf6A alignment "tfiiia fragment 5s ribosomal RNA gene fragment"
28.1.1.2.4.1 ____2drpA alignment "Tramtrack protein (two zinc-finger peptide) complexed with DNA"
29.1.1.1.1.1 3vub alignment "ccdb biological_unit"
29.2.1.1.1.1 _1rl2A alignment "ribosomal protein l2 Mutant biological_unit"
29.2.2.1.1.1 __1pse alignment "Photosystem i accessory protein e (psae) (subunit e) (wild type) (NMR, 10 structures)"
29.2.2.1.2.1 ____1vie alignment "dihydrofolate reductase (r67 dhfr)"
29.2.2.1.3.1 ____2ahjB alignment "nitrile hydratase (nhase) biological_unit"
30.1.1.1.1.1 1bd8 alignment "p19ink4d cdk46 INHIBITOR"
30.1.1.1.1.2 _____1iknD alignment "nf-kappa-b p65 subunit fragment (p65) nf-kappa-b p50d subunit fragment (p50d) i-kappa-b-alpha"
30.1.1.1.1.3 _____1ycsB alignment "p53 fragment 53bp2 fragment (p53bp2)"
30.2.1.1.1.1 _1ihvA alignment "hiv-1 integrase"
30.2.2.1.1.1 __1tuc alignment "alpha-spectrin fragment Mutant"
30.2.3.1.1.1 __1tud alignment "alpha-spectrin fragment Mutant"
30.2.3.2.1.1 ___1ckaA alignment "C-crk (n-terminal sh3 domain) (c-crksh3-n) complexed with c3g peptide (pro-pro-pro-ala-leu-pro-pro-lys-lys-arg)"
30.2.3.2.2.1 ____1bbzA alignment "abl tyrosine kinase fragment peptide p41"
30.2.3.2.3.1 ____1bb9 alignment "amphiphysin 2 fragment"
31.1.1.1.1.1 1a0aA alignment "phosphate system positive regulatory protein pho4 fragment (bhlh) biological_unit DNA fragment (uasp2(17))"
32.1.1.1.1.1 1an4A alignment "usf fragment (upstream stimulatory factor 1) Mutant biological_unit DNA"
32.1.2.1.1.1 __1am9A alignment "sterol regulatory element binding protein 1a fragment (srebp-1a) Mutant biological_unit DNA"
32.1.2.1.2.1 ____1mdyA alignment "Myod basic-helix-loop-helix (bhlh) domain (residues 102 - 166) mutant with cys 135 replaced by ser (c135s) complexed with DNA (5'-d(TpCpApApCpApGpCpTpGpTpTpGpA)-3')"
33.1.1.1.1.1 1ajqA alignment "penicillin amidohydrolase (penicillin acylase) biological_unit"
34.1.1.1.1.1 1bazA alignment "arc repressor (regulatory protein arc) Mutant biological_unit"
34.1.2.1.1.1 __1cmbA alignment "Met apo-repressor (metj)"
35.1.1.1.1.1 1dipA alignment "delta-sleep-inducing peptide immunoreactive peptide (dsip-immunoreactive peptide)"
36.1.1.1.1.1 1dipB alignment "delta-sleep-inducing peptide immunoreactive peptide (dsip-immunoreactive peptide)"
37.1.1.1.1.1 1lktA alignment "tailspike protein fragment (late protein gp9, tail protein, tsp)"
38.1.1.1.1.1 3ssi alignment "streptomyces subtilisin inhibitor (ssi)"
39.1.1.1.1.1 1adjA alignment "histidyl-trna synthetase biological_unit histidine"
39.1.1.1.1.1 ______1atiA alignment "glycyl-trna synthetase (glycine-trna ligase)"
39.1.1.1.1.1 ______1sesA alignment "Seryl-trna synthetase (serine-trna ligase) complexed with seryl-hydroxamate-amp"
39.1.1.1.1.2 _____1pysA alignment "phenylalanyl-trna synthetase biological_unit"
39.1.1.1.1.2 ______1pysB alignment "phenylalanyl-trna synthetase biological_unit"
39.1.1.1.1.3 _____1aszB alignment "Aspartyl trna synthetase (asprs) complexed with transfer ribonucleic acid (trna==asp==) and atp"
39.1.1.1.1.3 ______1lylA alignment "lysyl-trna synthetase (lysu) lysine"
39.1.1.1.1.3 ______12asA alignment "asparagine synthetase (l-aspartate:ammonia ligase (amp-forming)) Mutant biological_unit l-asparagine"
39.1.1.1.1.3 ______1b8aA alignment "aspartyl-trna synthetase (aspartyl trna ligase) biological_unit"
40.1.1.1.1.1 1ah9 alignment "initiation factor 1 (if1)"
40.1.1.2.1.1 ___1bkb alignment "transcription initiation factor 5a Mutant"
40.1.1.3.1.1 ___1mjc alignment "Major cold shock protein 7.4 (cspa (cs 7.4)) of (escherichia coli)"
40.1.1.3.2.1 ____1sro alignment "pnpase fragment (polyribonucleotide nucleotidyltransferase, polynucleotide phosphorylase) biological_unit"
40.1.1.3.3.1 ____1a62 alignment "rho fragment"
40.2.1.1.1.1 _1an8 alignment "streptococcal pyrogenic exotoxin c (spe-c) biological_unit"
40.2.1.1.1.1 ______3seb alignment "staphylococcal enterotoxin b (seb)"
40.2.1.1.1.1 ______1aw7A alignment "toxic shock syndrome toxin-1 (tsst-1) Mutant biological_unit"
40.2.2.1.1.1 __1ueaB alignment "matrix metalloproteinase-3 fragment (mmp-3 is identical with stromelysin 1) tissue inhibitor of metalloproteinase-1 (timp-1) mutant"
40.2.2.2.1.1 ___1tiiD alignment "heat labile enterotoxin type iib (lt-iib)"
40.2.2.2.1.2 _____3chbD alignment "cholera toxin fragment Mutant biological_unit"
40.2.2.2.2.1 ____1bcpD alignment "pertussis toxin"
40.2.2.2.2.2 _____1prtF alignment "Pertussis toxin"
40.2.2.2.2.3 _____1bcpB alignment "pertussis toxin"
40.2.2.2.3.1 ____1bovA alignment "Verotoxin-1 (b-oligomer, also called shiga-like toxin-1)"
40.2.2.2.4.1 ____3ullA alignment "DNA binding protein"
40.2.2.2.5.1 ____1jmcA alignment "replication protein a fragment (humrpa70kd, hrpa1) single stranded DNA (5'-d(CpCpCpCpCpCpCpCp)-3') biological_unit"
40.2.2.2.5.2 _____1otcA alignment "telomere-binding protein alpha subunit (alpha subunit) biological_unit telomere-binding protein beta subunit fragment (beta subunit) biological_unit DNA (5'-d(GpGpGpGpTpTpTpTpGpGpGpG)-3') fragment"
40.2.2.3.1.1 ___1krs alignment "lysyl-trna synthetase (product of lyss gene)"
40.3.1.1.1.1 _1a0i alignment "DNA ligase Mutant"
40.3.1.1.1.2 _____1ckmA alignment "mrna capping enzyme (RNA guanylyltransferase)"
41.1.1.1.1.1 1a44 alignment "phosphatidylethanolamine-binding protein (pebp, pbp)"
42.1.1.1.1.1 2mcm alignment "Macromomycin"
42.1.1.1.2.1 ____1b4r alignment "pkd1_human fragment"
42.1.1.2.1.1 ___1jrhI alignment "antibody a6 fragment interferon-gamma receptor alpha chain fragment Mutant"
42.1.1.2.1.2 _____1boy alignment "human tissue factor fragment (tf)"
42.1.1.2.2.1 ____1bquA alignment "gp130 fragment"
42.1.1.2.2.2 _____1axiB alignment "growth hormone (hgh) Mutant growth hormone receptor fragment (hghbp) Mutant"
42.1.1.2.2.2 ______1ebaA alignment "epo receptor fragment (ebp) epo mimetics peptide 33 (emp33,)"
42.1.1.2.2.3 _____2fnb alignment "fibronectin fragment"
42.1.1.2.2.4 _____1fnf alignment "fibronectin"
42.1.1.2.2.4 ______1ten alignment "Tenascin (third fibronectin type iii repeat)"
42.1.1.2.2.4 ______1fnhA alignment "fibronectin fragment"
42.1.1.2.2.5 _____1cfb alignment "Drosophila neuroglian (chymotryptic fragment containing the two amino proximal fibronectin type iii repeats (residues 610 - 814))"
42.1.1.2.3.1 ____1cto alignment "granulocyte colony-stimulating factor receptor fragment Mutant"
42.1.1.2.4.1 ____1dfx alignment "desulfoferrodoxin biological_unit"
42.1.1.2.5.1 ____1svb alignment "tick-borne encephalitis virus glycoprotein"
42.1.1.3.1.1 ___1itbB alignment "interleukin-1 beta biological_unit type 1 interleukin-1 receptor fragment"
42.1.1.3.2.1 ____1fltX alignment "vascular endothelial growth factor fragment (vegf, vpf) biological_unit fms-like tyrosine kinase 1 fragment (flt-1, vgr1) biological_unit"
42.1.1.3.3.1 ____1ah1 alignment "ctla-4 fragment (cd152) biological_unit"
42.1.1.3.4.1 ____1tlk alignment "Telokin"
42.1.1.3.4.2 _____1bihA alignment "hemolin"
42.1.1.3.4.3 _____1neu alignment "myelin p0 protein fragment"
42.1.1.3.4.4 _____1bec alignment "14.3.D t cell antigen receptor Mutant"
42.1.1.3.4.4 ______1cd8 alignment "Cd8 (t cell c0-receptor, n-terminal 114 residues)"
42.1.1.3.4.4 ______8fabA alignment "Fab fragment from human immunoglobulin igg1 (lambda, hil)"
42.1.1.3.4.4 ______1mfa alignment "Fv fragment (murine se155-4) complex with the trisaccharide"
42.1.1.3.4.4 ______1igtB alignment "igg2a intact antibody - mab231"
42.1.1.3.4.4 ______1tcrA alignment "alpha, beta t-cell receptor (vb8.2db2jb2.4cb2\ va3ja58ca); (tcr) biological_unit"
42.1.1.3.4.4 ______1tvdA alignment "t cell receptor fragment (es204 v delta) biological_unit"
42.1.1.3.4.5 _____1qfoA alignment "sialoadhesin fragment"
42.1.1.3.4.6 _____1cdy alignment "t-cell surface glycoprotein cd4 fragment Mutant"
42.1.1.3.4.7 _____1cczA alignment "cd58 fragment"
42.1.1.3.4.8 _____2ncm alignment "neural cell adhesion molecule fragment (ncam domain 1)"
42.1.1.3.4.9 _____1kb5B alignment "kb5-c20 t-cell antigen receptor fragment (tcr vaplha vbeta domain) antibody desire-1 fragment"
42.1.1.3.4.* _____1tit alignment "titin, i27 (connectin i27, titin ig repeat 27)"
42.1.1.3.5.1 ____1vcaA alignment "human vascular cell adhesion molecule-1 (vcam-d1,2)"
42.1.1.3.5.1 ______1zxq alignment "intercellular adhesion molecule-2 fragment (icam-2)"
42.1.1.3.6.1 ____1cid alignment "Cd4 (domains 3 and 4)"
42.1.1.3.7.1 ____1gya alignment "human cd2 fragment (hscd2=105=)"
42.1.1.3.8.1 ____1wit alignment "twitchin 18th igsf module"
42.1.1.3.9.1 ____1pfc alignment "pFc' fragment of an igG1"
42.1.1.3.*.1 ____1agdA alignment "b*0801 fragment (b8) beta-2 microglobulin fragment (b2m) hiv-1 gag peptide (ggkkkykl - index peptide) fragment"
42.1.1.3.*.1 ______1cd1A alignment "cd1 fragment (mcd1d.1) biological_unit"
42.1.1.3.*.2 _____1agdB alignment "b*0801 fragment (b8) beta-2 microglobulin fragment (b2m) hiv-1 gag peptide (ggkkkykl - index peptide) fragment"
42.1.1.3.*.2 ______1iakA alignment "mhc class ii i-ak hen eggwhite lysozyme peptide"
42.1.1.3.*.2 ______1iakB alignment "mhc class ii i-ak hen eggwhite lysozyme peptide"
42.1.1.3.*.1 ____1nkr alignment "p58-cl42 kir fragment (killer cell inhibitory receptor) biological_unit"
42.1.1.4.1.1 ___1edhA alignment "e-cadherin (epithelial cadherin domains 1 and 2, ecad12) Mutant biological_unit"
42.1.1.4.2.1 ____1mspA alignment "major sperm protein (msp)"
42.1.1.4.2.2 _____3dpa alignment "PapD"
42.1.2.1.1.1 __1cf1A alignment "arrestin (retinal s-antigen, 48 kd protein) biological_unit"
42.1.2.2.1.1 ___1lla alignment "Hemocyanin (subunit type ii)"
42.1.2.2.2.1 ____1rhoA alignment "rho gdp-dissociation inhibitor 1 (rho guanine nucleotide dissociation inhibitor, rhogdi) Mutant"
42.1.2.3.1.1 ___1a02N alignment "nfat fragment (nf-at) biological_unit c-fos Mutant c-jun Mutant DNA"
42.1.2.3.2.1 ____1a3qA alignment "nuclear factor-kappa-b p52 fragment mhc h-2 DNA biological_unit"
42.1.2.3.2.1 ______1iknA alignment "nf-kappa-b p65 subunit fragment (p65) nf-kappa-b p50d subunit fragment (p50d) i-kappa-b-alpha"
42.1.2.3.3.1 ____1tupA alignment "tumor suppressor p53 DNA (5'-d(tpTpTpCpC[TpApGpApCpTpTpGp* cpCpCpApApTpTpA)-3')"
42.1.2.3.4.1 ____1xbrA alignment "t protein fragment DNA"
42.1.3.1.1.1 __1who alignment "allergen phl p 2 (phl p ii)"
42.1.4.1.1.1 __1exg alignment "Exo-1,4-beta-d-glycanase (cellulase, xylanase) (binding domain) (NMR, minimized average structure)"
42.1.4.1.2.1 ____1nbcA alignment "cellulosomal scaffolding protein a fragment (scafoldin subunit)"
42.1.4.2.1.1 ___1amx alignment "collagen adhesin fragment (cbd19) biological_unit"
42.1.4.2.2.1 ____1ayoA alignment "alpha-2-macroglobulin fragment"
42.1.4.2.3.1 ____1aohA alignment "cellulosome-integrating protein cipa fragment"
42.1.4.2.4.1 ____1f13A alignment "cellular coagulation factor xiii zymogen fragment (cfxiii) biological_unit"
42.1.4.2.5.1 ____1hcz alignment "cytochrome f"
42.1.4.2.6.1 ____7ahlA alignment "alpha-hemolysin (alphatoxin) biological_unit"
42.1.5.1.1.1 __1qfhA alignment "gelation factor fragment (actin binding protein 120) biological_unit"
42.2.1.1.1.1 _1kum alignment "glucoamylase fragment (1,4-alpha-d-glucan glucohydrolase)"
42.2.2.1.1.1 __1bdyA alignment "protein kinase c fragment (pkc) Mutant"
42.2.2.1.2.1 ____1rsy alignment "Synaptotagmin i (first c2 domain) (calb)"
42.2.2.1.2.2 _____1djxB alignment "phosphoinositide-specific phospholipase c, isozyme delta1 (plc-d1) Mutant biological_unit"
42.2.2.1.2.2 ______1rlw alignment "phospholipase a2 fragment (calb domain) Mutant biological_unit"
43.1.1.1.1.1 1aroP alignment "t7 RNA polymerase Mutant biological_unit t7 lysozyme (n-acetylmuramoyl-l-alanine amidase) biological_unit"
43.1.1.1.2.1 ____1t7pA alignment "DNA polymerase Mutant thioredoxin DNA"
43.1.1.1.2.1 ______1taq alignment "taq DNA polymerase (taq) Mutant"
43.1.1.1.2.1 ______1xwl alignment "DNA polymerase i fragment (bf)"
43.1.1.1.3.1 ____1waj alignment "DNA polymerase (t4 gp43)"
43.1.1.1.3.1 ______1tgoA alignment "thermostable b DNA polymerase"
43.2.1.1.1.1 _1azsA alignment "vc1 fragment Mutant iic2 fragment gs-alpha (stimulatory g-protein alpha subunit) Mutant"
43.2.2.1.1.1 __1be3A alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
43.2.2.1.1.1 ______1be3B alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
43.3.1.1.1.1 _2rn2 alignment "Ribonuclease h"
43.3.1.2.1.1 ___1mml alignment "mmlv reverse transcriptase"
43.3.1.2.1.1 ______1rthA alignment "hiv-1 reverse transcriptase (hiv-1 rt)"
44.1.1.1.1.1 1byw alignment "human erg potassium channel fragment Mutant"
44.1.1.1.2.1 ____2phy alignment "photoactive yellow protein (pyp)"
44.1.1.1.2.2 _____1bv6 alignment "histidine kinase fragment"
45.1.1.1.1.1 1pne alignment "Profilin"
45.1.1.1.1.1 ______3nul alignment "profilin i"
45.1.2.1.1.1 __1btl alignment "Beta-lactamase tem1"
45.1.2.1.1.1 ______1pmd alignment "peptidoglycan synthesis multifunctional enzyme"
45.1.2.1.1.1 ______3pte alignment "D-alanyl-d-alanine carboxypeptidaseTRANSPEPTIDASE"
45.1.2.1.1.1 ______2blsA alignment "ampc beta-lactamase biological_unit"
46.1.1.1.1.1 1auiA alignment "serineTHREONINE PHOSPHATASE 2B (calcineurin)"
46.1.1.1.2.1 ____4kbpA alignment "purple acid phosphatase"
47.1.1.1.1.1 1dec alignment "Decorsin (NMR, 25 structures)"
48.1.1.1.1.1 4htcI alignment "Alpha-thrombin complex with recombinant hirudin (variant 2, lys 47)"
49.1.1.1.1.1 1stu alignment "maternal effect protein staufen"
50.1.1.1.1.1 2fua alignment "l-fuculose-1-phosphate aldolase"
51.1.1.1.1.1 1deaA alignment "glucosamine 6-phosphate deaminase"
51.1.1.2.1.1 ___1poiA alignment "glutaconate coenzyme a-transferase biological_unit"
51.1.1.2.2.1 ____1poiB alignment "glutaconate coenzyme a-transferase biological_unit"
51.2.1.1.1.1 _1amuA alignment "gramicidin synthetase 1 fragment (grsa) biological_unit phenylalanine"
51.2.1.1.1.1 ______1lci alignment "luciferase"
51.2.2.1.1.1 __1opr alignment "orotate phosphoribosyltransferase (oprtase)"
51.2.2.1.2.1 ____1nulA alignment "xanthine-guanine phosphoribosyltransferase (xprt) biological_unit"
51.2.2.1.2.2 _____1a3c alignment "pyrimidine operon regulatory protein pyrr (pyrr) biological_unit"
51.2.2.1.2.2 ______1dbrA alignment "hypoxanthine guanine xanthine phosphoribosyltransferase (hgxprtase)"
51.2.2.1.2.2 ______1hgxA alignment "hypoxanthine-guanine-xanthine phosphoribosyltransferase (hgxprtase)"
51.2.3.1.1.1 __1ordA alignment "ornithine decarboxylase"
51.2.3.1.1.2 _____1ajsA alignment "aspartate aminotransferase biological_unit"
51.2.3.1.1.2 ______1ax4A alignment "tryptophanase (tryptophan indole-lyase) biological_unit"
51.2.3.1.1.2 ______2dkb alignment "2,2-dialkylglycine decarboxylase (pyruvate) (dgd)"
51.2.3.1.1.2 ______2gsaA alignment "glutamate semialdehyde aminotransferase (glutamate semialdehyde aminomutase) biological_unit"
51.2.3.1.1.2 ______1bt4 alignment "phosphoserine aminotransferase fragment (psat) Mutant biological_unit"
51.2.3.1.1.2 ______1cl2A alignment "cystathionine beta-lyase (beta cystathionase) biological_unit"
52.1.1.1.1.1 3tgf alignment "Transforming growth factor-alpha (NMR, 4 structures)"
52.2.1.1.1.1 _1egf alignment "Epidermal growth factor (egf) (NMR, 16 structures)"
52.2.2.1.1.1 __1xdtR alignment "diphtheria toxin (dt) biological_unit heparin-binding epidermal growth factor fragment (hbegf)"
52.2.3.1.1.1 __1edmB alignment "factor ix fragment"
52.2.4.1.1.1 __1fsb alignment "p-selectin fragment"
53.1.1.1.1.1 1bgf alignment "stat-4 fragment"
54.1.1.1.1.1 1rmvA alignment "ribgrass mosaic virus coat protein ribgrass mosaic virus RNA fragment"
54.1.2.1.1.1 __1nfn alignment "apolipoprotein e3 fragment"
54.1.2.1.2.1 ____1vls alignment "aspartate receptor (tar) biological_unit"
54.1.2.1.3.1 ____2occC alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
54.1.2.1.4.1 ____256bA alignment "Cytochrome b562 (oxidized)"
54.1.2.1.4.2 _____1bbhA alignment "Cytochrome c'"
54.1.2.1.4.2 ______1cpq alignment "cytochrome c'"
54.1.2.1.4.2 ______2ccyA alignment "Cytochrome c'"
54.1.2.1.5.1 ____2mhr alignment "Myohemerythrin"
54.1.2.1.6.1 ____2a0b alignment "hpt domain"
54.1.2.1.7.1 ____1knyA alignment "kanamycin nucleotidyltransferase (kntase) Mutant"
54.1.2.1.8.1 ____1nsgB alignment "fk506-binding protein (fkbp-12) fkbp-rapamycin associated protein (frap) (frap)"
54.1.3.1.1.1 __3mdeA alignment "Medium chain acyl-coa dehydrogenase (mcad) complexed with octanoyl-coa"
54.1.3.2.1.1 ___1auwA alignment "delta 2 crystallin Mutant biological_unit"
54.1.3.2.1.1 ______1furA alignment "fumarase c (fumc) Mutant biological_unit"
54.1.3.3.1.1 ___1dkzA alignment "substrate binding domain of dnak biological_unit substrate peptide (7 residues)"
54.1.3.3.2.1 ____1fgjA alignment "hydroxylamine oxidoreductase"
54.1.4.1.1.1 __2occA alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
54.1.4.1.2.1 ____1brx alignment "bacteriorhodopsin biological_unit"
54.2.1.1.1.1 _1ail alignment "nonstructural protein ns1 fragment"
54.2.1.1.2.1 ____1fiy alignment "phosphoenolpyruvate carboxylase (pepc) biological_unit allosteric inhibitor asp"
54.2.2.1.1.1 __1a32 alignment "ribosomal protein s15"
54.2.2.1.2.1 ____1ecrA alignment "replication terminator protein (tus) DNA 16mer duplex replication terminator (ter)"
54.2.2.2.1.1 ___1br0 alignment "syntaxin 1-a fragment Mutant"
54.2.2.2.2.1 ____1bg1A alignment "stat3b biological_unit 18-mer desoxyoligonucleotide biological_unit"
54.2.2.2.3.1 ____1e2aA alignment "enzyme iia (enzyme iii, lactose-specific iia component) biological_unit"
54.2.2.2.4.1 ____1aj3 alignment "alpha spectrin fragment"
54.2.3.1.1.1 __1htmB alignment "Hemagglutinin ectodomain (soluble fragment, tbha2)"
54.2.4.1.1.1 __2ezqA alignment "gp41 fragment"
54.2.4.2.1.1 ___1fzcA alignment "fibrin fragment"
54.2.4.2.2.1 ____1eboA alignment "ebola virus envelope protein chimera consisting of a fragment of gcn4 zipper cloned n-terminali to a fragment of gp2 fragment Mutant biological_unit"
54.2.4.2.3.1 ____1avoB alignment "11s regulator (reg(alpha), pa28(alpha)) biological_unit"
54.2.4.2.4.1 ____1envA alignment "hiv-1 envelope protein chimera consisting of a fragment of gcn4 zipper cloned n-terminal to two fragments of gp41 fragment Mutant biological_unit"
54.2.4.2.5.1 ____1szt alignment "hiv-1 envelope glycoprotein gp41 fragment (gp41)"
54.2.5.1.1.1 __4hb1 alignment "dhp1"
54.2.5.2.1.1 ___1a91 alignment "f1fo atpase subunit c (proteolipid, dccd-binding protein) biological_unit"
54.2.5.2.2.1 ____1bmfG alignment "bovine mitochondrial f1-atpase (f1-atpase)"
54.2.5.2.3.1 ____1grj alignment "Grea transcript cleavage factor from escherichia coli"
54.2.5.2.4.1 ____1nkd alignment "rop (cole1 repressor of primer) Mutant biological_unit"
54.2.5.2.5.1 ____1aqt alignment "atp synthase fragment Mutant"
54.2.5.3.1.1 ___6prcM alignment "photosynthetic reaction center"
54.2.5.3.1.1 ______6prcL alignment "photosynthetic reaction center"
54.3.1.1.1.1 _1sknP alignment "transcription factor skn-1 fragment DNA"
54.3.2.1.1.1 __1sig alignment "RNA polymerase primary sigma factor fragment (sigma70) biological_unit"
54.3.2.2.1.1 ___1aep alignment "Apolipophorin iii"
54.3.2.2.2.1 ____1bl8A alignment "potassium channel protein fragment Mutant biological_unit"
54.4.1.1.1.1 _1dpsA alignment "dps (pexb) Mutant biological_unit"
54.4.1.1.1.2 _____1bcfA alignment "Bacterioferritin (cytochrome b1)"
54.4.1.1.1.2 ______1ryt alignment "rubrerythrin biological_unit"
54.4.1.1.1.2 ______2fha alignment "ferritin Mutant biological_unit"
54.4.1.1.2.1 ____1afrA alignment "delta9 stearoyl-acyl carrier protein desaturase (fatty acid desaturase) biological_unit"
54.4.1.1.2.2 _____1mhyD alignment "methane monooxygenase hydroxylase biological_unit"
54.4.1.1.2.2 ______1mtyB alignment "methane monooxygenase hydroxylase biological_unit"
54.4.1.1.2.2 ______1xikA alignment "protein r2 of ribonucleotide reductase fragment (rnr r2)"
54.4.1.1.2.2 ______1xsm alignment "ribonucleotide reductase r2 (r2) biological_unit"
54.4.1.1.2.2 ______1r2fA alignment "ribonucleotide reductase r2 biological_unit"
54.4.2.1.1.1 __1hulA alignment "interleukin-5"
54.4.2.1.2.1 ____2ilk alignment "interleukin-10"
54.4.2.2.1.1 ___1alu alignment "interleukin-6"
54.4.2.2.1.1 ______1bgc alignment "Granulocyte colony-stimulating factor (rbg-csf)"
54.4.2.2.1.2 _____1cnt3 alignment "ciliary neurotrophic factor (cntf) Mutant"
54.4.2.2.1.2 ______1lki alignment "Leukemia inhibitory factor (lif)"
54.4.2.2.1.3 _____1ax8 alignment "obesity protein (leptin) Mutant biological_unit"
54.4.2.2.1.4 _____1au1A alignment "interferon-beta"
54.4.2.2.1.5 _____1huw alignment "Human growth hormone mutant with phe 10 replaced by ala, met 14 replaced by trp, his 18 replaced by asp, his 21 replaced by asn, lys 41 replaced by ile, tyr 42 replaced by his, leu 45 replaced by trp, gln 46 replaced by trp, phe 54 replaced by pro, arg 64 replaced by lys, arg 167 replaced asn, asp 171 replaced by ser, glu 174 replaced by ser, phe 176 replaced by tyr, ile 179 replaced by thr (f10a, m14w,H18d,H21n,K41i,Y42h,L45w,Q46w,F54p,R64k,R167n,D171s, e174s,F176y,I179t)"
54.4.2.2.2.1 ____1rcb alignment "Interleukin 4"
54.4.2.2.2.2 _____3inkC alignment "Interleukin 2 mutant with cys 125 replaced by ala (c125a)"
54.4.2.2.3.1 ____1jli alignment "interleukin 3 (multi-csf) Mutant"
54.4.2.2.4.1 ____2gmfA alignment "granulocyte-macrophage colony-stimulating factor"
54.4.2.2.5.1 ____1rh2F alignment "interferon-alpha 2b biological_unit"
54.4.2.2.6.1 ____1hmcB alignment "Human macrophage colony stimulating factor (alpha form, soluble)"
55.1.1.1.1.1 1mpgA alignment "3-methyladenine DNA glycosylase ii (alka) biological_unit"
55.1.1.1.1.2 _____2abk alignment "endonuclease iii"
56.1.1.1.1.1 1coo alignment "RNA polymerase alpha subunit fragment"
56.2.1.1.1.1 _2ezxA alignment "barrier-to-autointegration factor biological_unit"
56.2.1.2.1.1 ___1b4fA alignment "ephb2 fragment"
57.1.1.1.1.1 1awcA alignment "ga binding protein alpha fragment (gabpalpha) ga binding protein beta 1 fragment (gabpbeta1) DNA"
57.1.1.1.2.1 ____1if1A alignment "interferon regulatory factor 1 fragment DNA"
57.1.1.1.3.1 ____2hts alignment "Heat shock transcription factor (DNA binding domain)"
58.1.1.1.1.1 1bgw alignment "topoisomerase fragment"
58.1.1.1.1.1 ______1ab4 alignment "gyrase a fragment"
58.2.1.1.1.1 _1smtA alignment "transcriptional repressor smtb biological_unit"
58.2.1.1.2.1 ____1bjaA alignment "transcription regulatory protein mota fragment"
58.2.1.1.3.1 ____1bia alignment "Bira bifunctional protein (acts as biotin operon repressor and biotin holoenzyme synthetase)"
58.2.1.1.4.1 ____2fokA alignment "foki restriction endonuclease fragment (r.Foki) biological_unit"
58.2.1.1.5.1 ____1lea alignment "Lexa repressor DNA binding domain (NMR, minimized average structure)"
58.2.1.1.6.1 ____1opc alignment "ompr fragment (omprc)"
58.2.1.1.7.1 ____1cf7A alignment "transcription factor e2f-4 fragment transcription factor dp-2 fragment DNA (5'-d(ApTpTpTpTpCpGpCpGpCpGpGpTpTpTpT)-3') fragment DNA (5'-d(TpApApApApCpCpGpCpGpCpGpApApApA)-3') fragment"
58.2.1.2.1.1 ___1hstA alignment "Histone h5 (globular domain)"
58.2.1.2.2.1 ____1cf7B alignment "transcription factor e2f-4 fragment transcription factor dp-2 fragment DNA (5'-d(ApTpTpTpTpCpGpCpGpCpGpGpTpTpTpT)-3') fragment DNA (5'-d(TpApApApApCpCpGpCpGpCpGpApApApA)-3') fragment"
58.2.1.2.3.1 ____1bm9A alignment "replication terminator protein (rtp, ter) biological_unit"
58.2.1.2.4.1 ____2hfh alignment "genesis fragment (hfh-2) biological_unit"
58.2.1.3.1.1 ___1ecl alignment "escherichia coli topoisomerase i (escherichia coli omega protein) Mutant engineered"
58.2.1.3.2.1 ____2tdx alignment "diphtheria tox repressor (dtxr) Mutant biological_unit"
58.2.1.4.1.1 ___2bby alignment "rap30 fragment"
58.2.1.5.1.1 ___1aoy alignment "arginine repressor fragment"
59.1.1.1.1.1 1anv alignment "adenovirus single-stranded DNA-binding protein fragment"
60.1.1.1.1.1 1ecmA alignment "endo-oxabicyclic transition state analogue"
60.1.1.1.2.1 ____5csmA alignment "chorismate mutase (chorismate pyruvate mutase) Mutant biological_unit l-tryptophan"
60.2.1.1.1.1 _1cpcA alignment "C-phycocyanin"
60.2.1.1.1.1 ______1phnB alignment "phycocyanin fragment"
60.2.1.1.2.1 ____1hlb alignment "Hemoglobin (sea cucumber)"
60.2.1.1.2.2 _____1abwA alignment "hemoglobin-based blood substitute Mutant peptide"
60.2.1.1.2.2 ______1ash alignment "Hemoglobin (domain one)"
60.2.1.1.2.2 ______1flp alignment "Hemoglobin i (monomeric) (ferric)"
60.2.1.1.2.2 ______1ithA alignment "Hemoglobin (cyanomet)"
60.2.1.1.2.2 ______2fal alignment "Myoglobin (ferric) complex with cyanide"
60.2.1.1.2.2 ______2hbg alignment "Hemoglobin (deoxy)"
60.2.1.1.2.2 ______3sdhA alignment "Hemoglobin i (homodimer) (carbon-monoxy)"
60.2.1.1.2.2 ______1a6m alignment "myoglobin biological_unit"
60.2.1.1.2.2 ______1cg5B alignment "hemoglobin hemoglobin"
60.2.1.1.2.3 _____2gdm alignment "leghemoglobin (oxy)"
60.2.1.1.2.3 ______2vhbA alignment "hemoglobin (soluble cytochrome o) biological_unit"
60.2.1.1.3.1 ____1cii alignment "colicin ia biological_unit"
60.2.1.1.3.2 _____1a87 alignment "colicin n fragment"
61.1.1.1.1.1 1tvxA alignment "neutrophil activating peptide 2 variant (nap-2) Mutant"
61.1.1.1.2.1 ____1dokA alignment "monocyte chemoattractant protein 1 (mcp-1, mcaf) Mutant"
61.1.1.1.2.2 _____1b3aA alignment "rantes"
61.1.1.1.3.1 ____1a15A alignment "stromal derived factor-1alpha (sdf-1) Mutant"
62.1.1.1.1.1 1ap0 alignment "modifier protein 1 fragment (momod1, heterochromatin protein 1) Mutant"
62.1.2.1.1.1 __1azpA alignment "sac7d (7 kd hyperthermophile DNA-binding protein) DNA"
63.1.1.1.1.1 1b9pA alignment "collagen alpha 1 fragment (alpha 1 type xiv collagen) Mutant"
63.2.1.1.1.1 _1svfB alignment "sv5 fusion protein fragment sv5 fusion protein fragment Mutant biological_unit"
63.3.1.1.1.1 _1peh alignment "pepnh1 fragment (cytidylyltransferase membrane binding domain peptide) Mutant"
64.1.1.1.1.1 1eps alignment "5-enol-pyruvyl-3-phosphate synthase"
64.1.1.1.1.1 ______1uae alignment "udp-n-acetylglucosamine enolpyruvyl transferase (mura)"
65.1.1.1.1.1 1ako alignment "exonuclease iii biological_unit"
65.1.1.1.1.1 ______3dni alignment "Deoxyribonuclease i (dnase i)"
65.2.1.1.1.1 _1seiA alignment "ribosomal protein s8"
65.2.1.2.1.1 ___1tig alignment "translation initiation factor 3 (if3-c)"
66.1.1.1.1.1 1rzl alignment "nonspecific lipid transfer protein fragment"
66.1.2.1.1.1 __1brwA alignment "pyrimidine nucleoside phosphorylase biological_unit"
67.1.1.1.1.1 1bea alignment "bifunctional amylaseSERINE PROTEASE INHIBITOR biological_unit"
67.2.1.1.1.1 _1hyp alignment "Hydrophobic protein from soybean"
67.2.2.1.1.1 __1avc alignment "annexin vi (p68, protein iii, 67-kda-calcimedin, lipocortin vi, 67-kda-calelectrin, chromobindin 20, calphobindin ii)"
67.2.2.1.1.2 _____1bo9 alignment "annexin i fragment"
68.1.1.1.1.1 1regX alignment "t4 rega"
68.2.1.1.1.1 _1dcpA alignment "dcoh (dimerization cofactor of hepatocyte nuclear factor 1-alpha, hnf-1, phs, phenylalanine hydroxylase stimulator)"
68.2.2.1.1.1 __1xxaA alignment "arginine repressor fragment (argr) l-arginine (arg)"
69.1.1.1.1.1 2occJ alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
69.2.1.1.1.1 _2occL alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
69.3.1.1.1.1 _2occM alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
70.1.1.1.1.1 1ba4 alignment "amyloid beta-peptide fragment"
71.1.1.1.1.1 1kveA alignment "smk toxin fragment"
72.1.1.1.1.1 1pvc4 alignment "poliovirus type 3, sabin strain"
73.1.1.1.1.1 1bev4 alignment "bovine enterovirus coat proteins vp1 to vp4"
74.1.1.1.1.1 1zwb alignment "parathyroid hormone fragment (hpth(2-37))"
75.1.1.1.1.1 1zwg alignment "parathyroid hormone fragment (n-succinyl-hpth(4-37)) Mutant"
76.1.1.1.1.1 2ptl alignment "Protein l (b1 domain) (NMR, 21 structures)"
76.1.1.1.2.1 ____2igd alignment "protein g fragment"
77.1.1.1.1.1 1tum alignment "mutator mutt protein (muttqc, dgtp pyrophosphohydrolase, 7,8-dihydro-8-oxoguanine-triphosphatase)"
77.1.2.1.1.1 __2sak alignment "staphylokinase Mutant"
78.1.1.1.1.1 1dhs alignment "deoxyhypusine synthase"
78.1.1.1.2.1 ____16pk alignment "3-phosphoglycerate kinase (pgk) Mutant biological_unit"
78.1.1.1.3.1 ____1trkA alignment "Transketolase"
78.1.1.1.3.2 _____1bfd alignment "benzoylformate decarboxylase biological_unit"
78.1.1.1.3.2 ______1poxA alignment "Pyruvate oxidase mutant with pro 178 replaced by ser, ser 188 replaced by asn, and ala 458 replaced by val (p178s,S188n,A458v)"
78.1.1.1.3.2 ______1zpdA alignment "pyruvate decarboxylase biological_unit"
78.2.1.1.1.1 _1pjr alignment "pcra"
78.2.1.1.1.2 _____1heiA alignment "hcv helicase"
78.2.1.2.1.1 ___1a5t alignment "delta prime (holb) biological_unit"
78.2.1.2.1.2 _____1d2nA alignment "n-ethylmaleimide-sensitive fusion protein fragment"
78.2.1.2.2.1 ____2reb alignment "Rec a protein"
78.2.1.2.2.2 _____1skyB alignment "f1-atpase (f1-atp synthase)"
78.2.1.2.2.2 ______1skyE alignment "f1-atpase (f1-atp synthase)"
78.2.1.2.2.3 _____1cbuA alignment "adenosylcobinamide kinaseADENOSYLCOBINAMIDE phosphate guanylyltransferase"
78.3.1.1.1.1 _1rlaA alignment "arginase"
78.3.2.1.1.1 __1boo alignment "n-4 cytosine-specific methyltransferase pvu ii fragment Mutant"
79.1.1.1.1.1 1a9nA alignment "u2 RNA hairpin iv fragment u2 a' fragment Mutant u2 b'' fragment"
79.1.1.1.1.2 _____1a4yA alignment "ribonuclease inhibitor angiogenin"
80.1.1.1.1.1 1air alignment "pectate lyase c (pelc)"
80.1.1.1.1.1 ______1bn8 alignment "pectate lyase biological_unit"
80.1.1.1.1.1 ______1idk alignment "pectin lyase a"
80.1.1.1.1.1 ______1rmg alignment "rhamnogalacturonase a (rgase a)"
80.1.1.1.1.1 ______1tyv alignment "tailspike protein fragment (tailspike endorhamnosidase)"
80.1.1.1.1.1 ______1bhe alignment "polygalacturonase (peha) biological_unit"
80.1.2.1.1.1 __2xat alignment "xenobiotic acetyltransferase biological_unit"
80.1.2.1.2.1 ____3tdt alignment "tetrahydrodipicolinate n-succinyltransferase (dapd) biological_unit"
80.1.2.1.2.2 _____1lxa alignment "udp n-acetylglucosamine o-acyltransferase (lpxa) Mutant"
80.1.2.1.2.2 ______1thjA alignment "carbonic anhydrase (cam)"
81.1.1.1.1.1 1ihp alignment "phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase)"
81.1.1.1.1.1 ______2hpaA alignment "acid phosphatase biological_unit"
81.1.1.1.2.1 ____1bif alignment "6-phosphofructo-2-kinase fructose-2,6-bisphosphatase Mutant biological_unit"
81.1.1.1.2.1 ______5pgmA alignment "phosphoglycerate mutase 1 (phosphoglyceromutase) biological_unit"
82.1.1.1.1.1 1ayl alignment "phosphoenolpyruvate carboxykinase (atp-oxaloacetate carboxy-lyase (atp))"
82.2.1.1.1.1 _1ble alignment "fructose permease (fructose transporter, iib subunit)"
82.2.2.1.1.1 __1zin alignment "adenylate kinase (adk)"
82.2.2.1.1.2 _____1shkA alignment "shikimate kinase biological_unit"
82.2.2.1.2.1 ____1gky alignment "Guanylate kinase complex with guanosine monophosphate"
82.2.2.1.2.2 _____1nksA alignment "adenylate kinase (atp:amp phosphotransferase) biological_unit"
82.2.2.1.3.1 ____2ki5A alignment "thymidine kinase (tk) biological_unit"
82.2.2.1.3.2 _____5tmp alignment "thymidylate kinase biological_unit"
82.2.2.1.3.2 ______3tmkA alignment "thymidylate kinase biological_unit"
82.2.2.1.4.1 ____1dekA alignment "deoxynucleoside monophosphate kinase"
82.2.2.1.5.1 ____1aquA alignment "estrogen sulfotransferase (est)"
82.2.2.1.6.1 ____1a7j alignment "phosphoribulokinase biological_unit"
82.3.1.1.1.1 _1auk alignment "arylsulfatase a (cerebroside-3-sulfate-sulfatase)"
82.3.1.1.1.1 ______1b8jA alignment "alkaline phosphatase biological_unit"
83.1.1.1.1.1 1aj8A alignment "citrate synthase biological_unit"
83.1.1.1.1.1 ______1csh alignment "Citrate synthase complexed with oxaloacetate and amidocarboxymethyldethia coenzyme a"
84.1.1.1.1.1 1ah7 alignment "phospholipase c (phosphatidylcholine-hydrolyzing phospholipase c) biological_unit"
84.1.1.1.1.1 ______1ak0 alignment "p1 nuclease"
84.2.1.1.1.1 _1maz alignment "bcl-xl (apoptosis regulator bcl-x)"
84.2.2.1.1.1 __2tct alignment "tetracycline repressor (tet repressor, class d)"
85.1.1.1.1.1 1ca9A alignment "tnf receptor associated factor 2 fragment (traf2) biological_unit tnf-r2 fragment"
85.2.1.1.1.1 _1mfmA alignment "copper,Zinc superoxide dismutase (q133m2sod) Mutant biological_unit"
85.2.1.1.1.1 ______1yaiA alignment "copper, zinc superoxide dismutase (cu, zn superoxide dismutase, cu, zn sod) biological_unit"
86.1.1.1.1.1 1ubpB alignment "urease (urea aminohydrolase)"
87.1.1.1.1.1 1kwaA alignment "hcaskLIN-2 PROTEIN fragment (hcask, glgf repeat, dhr) biological_unit"
87.1.1.1.1.2 _____1pdr alignment "human discs large protein fragment (hdlg, dhr3 domain)"
88.1.1.1.1.1 1smpI alignment "serratia metallo proteinase erwinia chrysanthemi inhibitor"
88.2.1.1.1.1 _2izk alignment "streptavidin"
88.2.1.1.2.1 ____1bxwA alignment "outer membrane protein a fragment Mutant biological_unit"
88.2.1.2.1.1 ___1obpA alignment "odorant-binding protein (obp)"
88.2.1.2.2.1 ____1np4 alignment "nitrophorin 4 (np4) biological_unit"
88.2.1.2.2.2 _____1aqb alignment "retinol-binding protein (rbp)"
88.2.1.2.2.2 ______1bbpA alignment "Bilin binding protein (BBP)"
88.2.1.2.2.3 _____1bebA alignment "beta-lactoglobulin biological_unit"
88.2.1.2.2.3 ______1epaA alignment "Epididymal retinoic acid-binding protein (androgen dependent secretory protein) (b-form)"
88.2.1.2.2.3 ______1mup alignment "Major urinary protein complex with 2-(sec-butyl) thiazoline"
88.2.1.2.3.1 ____1hmt alignment "Fatty acid binding protein (human muscle, m-fabp) complexed with one molecule of stearic acid"
88.2.1.2.4.1 ____1avgI alignment "thrombin triabin"
89.1.1.1.1.1 4bcl alignment "bacteriochlorophyll a protein biological_unit"
89.1.1.2.1.1 ___1a0tP alignment "sucrose-specific porin biological_unit"
89.1.1.2.1.1 ______2mprA alignment "maltoporin fragment (lam-b, mal-l) biological_unit"
89.1.1.2.1.2 _____2omf alignment "matrix porin outer membrane protein f (matrix porin, ompf porin) biological_unit"
89.1.1.2.1.2 ______2por alignment "Porin (crystal form b)"
89.1.1.2.1.2 ______3prn alignment "porin Mutant biological_unit"
89.1.1.2.1.3 _____1fep alignment "ferric enterobactin receptor fragment (fepa) biological_unit"
89.1.1.2.1.3 ______1by5A alignment "fhua biological_unit ferrichrome biological_unit"
89.2.1.1.1.1 _1msc alignment "Bacteriophage ms2 unassembled coat protein dimer (translational repressor, assembly-defective) mutant with trp 82 replaced by arg (w82r)"
89.2.1.1.1.2 _____1qbeA alignment "bacteriophage q beta capsid"
89.2.2.1.1.1 __1ospO alignment "fab 184.1 outer surface protein a (ospa) Mutant"
89.2.2.1.2.1 ____1ugiA alignment "uracil-DNA glycosylase inhibitor (ugi) biological_unit"
90.1.1.1.1.1 1byl alignment "bleomycin resistance protein (sh-ble) biological_unit"
90.1.1.1.2.1 ____1bh5A alignment "lactoylglutathione lyase (glyoxalase i) Mutant biological_unit"
90.1.1.1.3.1 ____1han alignment "2,3-dihydroxybiphenyl 1,2-dioxygenase (biphenyl-2,3-diol 1,2-dioxygenase, dhbd, bphc) Mutant"
91.1.1.1.1.1 1bpyA alignment "DNA polymerase beta (pol beta, beta-pol) biological_unit gapped DNA"
91.1.2.1.1.1 __3proC alignment "alpha-lytic protease fragment Mutant biological_unit alpha-lytic protease fragment"
92.1.1.1.1.1 1guqA alignment "galactose-1-phosphate uridylyltransferase Mutant"
92.1.1.1.2.1 ____1fit alignment "fragile histidine protein (fhit, fragile histidine triad protein) biological_unit"
92.1.1.1.2.2 _____1kpf alignment "protein kinase c interacting protein (pkci-1, protein kinase c inhibitor 1, hint protein, hit protein) biological_unit"
93.1.1.1.1.1 1nox alignment "nadh oxidase biological_unit"
93.1.1.1.1.1 ______1bkjA alignment "nadph-flavin oxidoreductase (flavin reductase p, frp, fmn reductase, nadph:fmn oxidoreductase) biological_unit"
93.1.1.1.1.1 ______1vfrA alignment "nad(p)h:fmn oxidoreductase (frase i, fmn reductase) biological_unit"
93.2.1.1.1.1 _1lbu alignment "muramoyl-pentapeptide carboxypeptidase"
93.2.1.1.2.1 ____1vhh alignment "sonic hedgehog (hhg-1, vhh-1)"
94.1.1.1.1.1 1gtpA alignment "gtp cyclohydrolase i"
94.1.1.1.2.1 ____1dhn alignment "7,8-dihydroneopterin aldolase (dhna)"
94.1.1.1.3.1 ____1uox alignment "urate oxidase (uricase) biological_unit"
94.1.1.1.4.1 ____1b66A alignment "6-pyruvoyl tetrahydropterin synthase"
95.1.1.1.1.1 1apyB alignment "aspartylglucosaminidase (aga, glycosylasparaginase)"
95.1.2.1.1.1 __1ecfB alignment "glutamine phosphoribosylpyrophosphate amidotransferase"
95.1.2.1.1.1 ______1gdoA alignment "glucosamine 6-phosphate synthase fragment (l-glutamine:d-fructose-6p amidotransferase) l-glutamate"
95.1.2.2.1.1 ___1ajqB alignment "penicillin amidohydrolase (penicillin acylase) biological_unit"
95.1.2.2.2.1 ____1nedA alignment "hslv"
95.1.2.2.2.1 ______1pmaA alignment "proteasome (prosome, multicatalytic protease, mcp, macropain)"
95.1.2.2.2.1 ______1pmaP alignment "proteasome (prosome, multicatalytic protease, mcp, macropain)"
95.1.2.3.1.1 ___1a6q alignment "phosphatase 2c"
96.1.1.1.1.1 1exnA alignment "5'-exonuclease (5'-nuclease) 5'-3' exonuclease; Mutant"
96.1.1.1.1.1 ______1tfr alignment "t4 rnase h (t4 5u to 3u exonuclease)"
96.2.1.1.1.1 _2ts1 alignment "Tyrosyl-transfer RNA synthetase"
96.2.1.1.2.1 ____1ile alignment "isoleucyl-trna synthetase (ilers) biological_unit"
96.2.1.1.2.2 _____1gln alignment "glutamyl-trna synthetase"
96.2.1.1.2.2 ______1gtrA alignment "Glutaminyl-trna synthetase complexed with trna and atp (-8 degrees c)"
96.2.1.2.1.1 ___1qnf alignment "photolyase (DNA cyclobutane dipyrimidine photolyase)"
96.2.1.2.2.1 ____1mjhA alignment "atp-binding domain of protein mj0577 fragment"
96.2.1.2.3.1 ____1efvA alignment "electron transfer flavoprotein (etf, hetf, electron transferring flavoprotein) biological_unit"
96.2.1.2.3.1 ______1efvB alignment "electron transfer flavoprotein (etf, hetf, electron transferring flavoprotein) biological_unit"
96.2.1.2.4.1 ____1gpmA alignment "gmp synthetase (xmp aminase)"
96.2.1.2.4.2 _____2nsyA alignment "nad synthetase biological_unit"
97.1.1.1.1.1 1ap8 alignment "translation initiation factor eif4e"
98.1.1.1.1.1 1otcB alignment "telomere-binding protein alpha subunit (alpha subunit) biological_unit telomere-binding protein beta subunit fragment (beta subunit) biological_unit DNA (5'-d(GpGpGpGpTpTpTpTpGpGpGpG)-3') fragment"
99.1.1.1.1.1 1a28A alignment "progesterone receptor fragment"
99.1.1.1.1.1 ______1lbd alignment "retinoid x receptor fragment (rxr_lbd)"
99.1.1.1.1.1 ______2lbd alignment "retinoic acid receptor gamma fragment (e domain) biological_unit"
99.1.1.1.1.1 ______3erdA alignment "estrogen receptor alpha fragment (oestrogen receptor, er lbd) biological_unit glucocorticoid receptor interacting protein 1 fragment (grip1)"
100.1.1.1.1.1 1vnc alignment "vanadium-containing chloroperoxidase"
100.2.1.1.1.1 _1guxB alignment "retinoblastoma protein fragment oncoprotein"
100.2.1.1.2.1 ____1aisB alignment "tata-binding protein fragment (tbp) biological_unit transcription initiation factor iib fragment (tfb tfiib) DNA"
100.2.1.1.2.2 _____1tfb alignment "tfiib fragment Mutant"
100.2.1.1.2.3 _____1jkw alignment "cyclin h (rcyclin h (recombinant))"
100.2.1.1.2.3 ______1vin alignment "cyclin a Mutant"
100.2.1.1.3.1 ____1guxA alignment "retinoblastoma protein fragment oncoprotein"
101.1.1.1.1.1 2plc alignment "phosphatidylinositol-specific phospholipase c (pi-plc) biological_unit"
101.1.1.2.1.1 ___1uroA alignment "uroporphyrinogen decarboxylase (uro-d, urod) biological_unit"
101.1.1.2.1.2 _____1a0cA alignment "xylose isomerase (glucose isomerase) biological_unit"
101.1.1.2.1.2 ______4xis alignment "Xylose isomerase complex with xylose and mnCl2"
101.1.1.2.2.1 ____1byb alignment "Beta-amylase reacted with 200 mm maltose and complexed with maltotetraose"
101.1.1.2.2.1 ______1b9zA alignment "beta-amylase"
101.1.1.2.2.2 _____1aq0A alignment "1,3-1,4-beta-glucanase (1,3-1,4-beta-d-glucan 4-glucanohydrolase)"
101.1.1.2.2.2 ______1bglA alignment "beta-galactosidase"
101.1.1.2.2.2 ______1bhgA alignment "beta-glucuronidase (gus gene product) biological_unit"
101.1.1.2.2.2 ______1ceo alignment "cellulase celc (1,4-beta-d-glucan-glucanohydrolase, endo-1,4-beta-glucanase c) Mutant"
101.1.1.2.2.2 ______1eceA alignment "endocellulase e1 fragment (endo-1,4-beta-d-glucanase)"
101.1.1.2.2.2 ______1edg alignment "endoglucanase a fragment (endo-(1,4)-beta-glucanase, celcca)"
101.1.1.2.2.2 ______1gowA alignment "beta-glycosidase biological_unit"
101.1.1.2.2.2 ______1xyzA alignment "1,4-beta-d-xylan-xylanohydrolase (endo-1\,4-beta-xylanase z, xylanase xynz)"
101.1.1.2.2.2 ______2myr alignment "myrosinase (thioglucoside glucohydrolase) biological_unit"
101.1.1.2.2.2 ______1a3h alignment "endoglucanase fragment (cellulase) biological_unit"
101.1.1.2.2.3 _____1b5tA alignment "methylenetetrahydrofolate reductase biological_unit"
101.1.1.2.2.4 _____1cnv alignment "concanavalin b"
101.1.1.2.2.4 ______1ctn alignment "Chitinase a (ph 5.5, 4 degrees c)"
101.1.1.2.2.4 ______1nar alignment "Narbonin"
101.1.1.2.2.4 ______2ebn alignment "Endo-beta-n-acetylglucosaminidase f1 (endoglycosidase f1, endo f1)"
101.1.1.2.2.5 _____1qba alignment "chitobiase (beta-n-acetylhexosaminidase, n-acetyl-beta-d-glucosaminidase)"
101.1.1.2.3.1 ____1onrA alignment "transaldolase b"
101.1.1.2.4.1 ____1aj2 alignment "dihydropteroate synthase (dhps) biological_unit"
101.1.1.2.4.2 _____1aw5 alignment "5-aminolevulinate dehydratase (porphobilinogen synthase) Mutant biological_unit"
101.1.1.2.4.3 _____1amk alignment "triose phosphate isomerase biological_unit"
101.1.1.2.4.4 _____1fbaA alignment "Fructose-1,6-bisphosphate aldolase"
101.1.1.2.4.5 _____1burA alignment "ribulose 1,5-bisphosphate carboxylaseOXYGENASE (rubisco) biological_unit"
101.1.1.2.4.6 _____1dhpA alignment "dihydrodipicolinate synthase (dhdps) Mutant"
101.1.1.2.4.6 ______1nal3 alignment "n-acetylneuraminate lyase"
101.1.1.2.4.7 _____1dik alignment "pyruvate phosphate dikinase (ppdk) biological_unit"
101.1.1.2.4.7 ______1a49A alignment "pyruvate kinase biological_unit"
101.1.1.2.4.8 _____1nsj alignment "phosphoribosyl anthranilate isomerase (prai)"
101.1.1.2.4.8 ______1pii alignment "N-(5'phosphoribosyl)anthranilate isomerase complex with indole-3-glycerol-phosphate synthase"
101.1.1.2.4.8 ______2tysA alignment "tryptophan synthase Mutant biological_unit"
101.1.1.2.4.8 ______1a53 alignment "indole-3-glycerolphosphate synthase (igps) biological_unit"
101.1.1.2.4.8 ______2tpsA alignment "thiamin phosphate synthase biological_unit"
101.1.1.2.4.8 ______1rpxA alignment "ribulose-phosphate 3-epimerase biological_unit"
101.1.1.2.4.9 _____1oyc alignment "Old yellow enzyme (reduced) (oye)"
101.1.1.2.4.9 ______2tmdA alignment "Trimethylamine dehydrogenase"
101.1.1.2.4.* _____1gox alignment "Glycolate oxidase"
101.1.1.2.4.* ______2dorA alignment "dihydroorotate dehydrogenase a biological_unit"
101.1.1.2.4.* ______1zfjA alignment "inosine monophosphate dehydrogenase fragment"
101.1.1.2.4.* _____1pud alignment "trna-guanine transglycosylase (tgt)"
101.1.1.2.4.* _____1frb alignment "fr-1 protein"
101.1.1.2.5.1 ____1dosA alignment "aldolase class ii"
101.1.1.2.6.1 ____1mucA alignment "muconate lactonizing enzyme (cic, cis muconate cycloisomerase)"
101.1.1.2.6.1 ______2mnr alignment "Mandelate racemase"
101.1.1.2.6.1 ______4enl alignment "Enolase (2-phospho-D-glycerate hydrolase) (holo)"
101.1.1.2.7.1 ____1jdc alignment "1,4-alpha maltotetrahydrolase (maltotetraose-forming exo-amylase) Mutant"
101.1.1.2.7.1 ______1pamA alignment "cyclodextrin glucanotransferase biological_unit"
101.1.1.2.7.1 ______1smd alignment "amylase"
101.1.1.2.7.1 ______1bf2 alignment "isoamylase (glycogen 6-glucanohydrolase)"
101.1.1.2.7.1 ______1bag alignment "alpha-1,4-glucan-4-glucanohydrolase (alpha-amylase) Mutant"
101.1.1.2.7.1 ______7taa alignment "taka amylase"
101.1.1.2.7.1 ______1bvzA alignment "alpha-amylase fragment"
101.1.1.2.7.1 ______1uok alignment "oligo-1,6-glucosidase"
101.1.1.2.7.1 ______1bli alignment "alpha-amylase (glucanotransferase, alpha-1,4-glucan-4-glucanohydrolase) Mutant biological_unit"
101.1.1.2.8.1 ____1bd0A alignment "alanine racemase biological_unit"
101.1.1.2.8.1 ______1b54 alignment "yeast hypothetical protein biological_unit"
101.1.1.2.9.1 ____1pscA alignment "phosphotriesterase"
101.1.1.2.9.2 _____1a4mA alignment "adenosine deaminase (ada)"
101.1.1.2.9.3 _____1ubpC alignment "urease (urea aminohydrolase)"
101.1.1.2.*.1 ____1lucA alignment "bacterial luciferase"
101.1.1.2.*.1 ______1nfp alignment "Luxf gene product (nonfluorescent flavoprotein) complexed with myristic acid and fmn"
101.1.1.2.*.1 ____1cb2A alignment "cellobiohydrolase ii fragment (cbh ii (y169f)) Mutant"
101.1.1.2.*.1 ______1tml alignment "Endo-1,4-beta-d-glucanase"
101.1.1.2.*.1 ____1qpoA alignment "quinolinic acid phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase (carboxylating)) biological_unit"
102.1.1.1.1.1 1auz alignment "spoiiaa"
102.1.1.2.1.1 ___1tyfA alignment "clp peptidase (clpp)"
102.1.1.2.1.2 _____1nzyA alignment "4-chlorobenzoyl coenzyme a dehalogenase (dehalogenase)"
102.1.1.2.1.2 ______1dciA alignment "dienoyl-coa isomerase (delta3,5,Delta2,4-dienoyl-coenzyme a isomerase, probable peroxisomal enoyl-coa hydratase) biological_unit"
102.2.1.1.1.1 _1ay7B alignment "guanyl-specific ribonuclease sa barstar"
102.2.2.1.1.1 __1rlr alignment "ribonucleotide reductase protein r1 (ribonucleoside diphosphate reductase protein r1 (b1 in old texts)) biological_unit"
102.2.2.1.1.1 ______1b8bA alignment "anaerobic ribonucleotide-triphosphate reductase large chain fragment (nrdd) Mutant biological_unit"
103.1.1.1.1.1 1awd alignment "ferredoxin"
103.1.1.1.2.1 ____1ayfA alignment "adrenodoxin"
103.1.1.1.3.1 ____1alo alignment "aldehyde oxidoreductase (molybdenum iron sulfur protein, mop)"
103.1.1.1.4.1 ____1fehA alignment "hydrogenase biological_unit"
103.1.2.1.1.1 __1a5r alignment "sumo-1 (pic1, gmp1, ubl1, sentrin)"
103.1.2.2.1.1 ___1lxdA alignment "ralgdsb fragment Mutant"
103.1.2.2.2.1 ____1bt0 alignment "rub1 Mutant"
103.1.2.2.2.2 _____1vcbA alignment "elongin b fragment elongin c fragment vhl fragment"
103.1.2.2.3.1 ____1guaB alignment "rap1a fragment Mutant c-raf1 fragment"
103.1.3.1.1.1 __1acc alignment "anthrax protective antigen (pa)"
104.1.1.1.1.1 1orc alignment "cro repressor insertion mutant k56-[dgevk] Mutant"
105.1.1.1.1.1 1neq alignment "DNA-binding protein ner"
105.1.1.2.1.1 ___1lmb3 alignment "Lambda repressorOPERATOR COMPLEX"
105.1.1.2.2.1 ____1r69 alignment "434 repressor (amino-terminal domain) (r1-69)"
105.1.1.2.2.2 _____1b0nA alignment "sinr protein biological_unit sini protein biological_unit"
106.1.1.1.1.1 1aub alignment "hiv-2 integrase fragment"
107.1.1.1.1.1 1a36A alignment "topoisomerase i fragment Mutant biological_unit DNA"
107.1.1.1.2.1 ____1be3C alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
107.1.1.1.3.1 ____1p32A alignment "mitochondrial matrix protein, sf2p32 Mutant"
107.2.1.1.1.1 _1qcrH alignment "ubiquinol cytochrome c oxidoreductase (cytochrome bc1, qcr) biological_unit"
107.2.1.2.1.1 ___1be3H alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
108.1.1.1.1.1 1mhlC alignment "myeloperoxidase"
108.1.1.1.1.1 ______1pth alignment "prostaglandin h2 synthase-1 (cyclooxygenase i)"
109.1.1.1.1.1 1snc alignment "Staphylococcal nuclease complex with a calcium ion and 3-prime, 5-prime-Deoxythymidine bisphosphate"
110.1.1.1.1.1 1cpo alignment "chloroperoxidase (cpo, clp)"
111.1.1.1.1.1 1fow alignment "l11-c76 fragment Mutant"
112.1.1.1.1.1 1ema alignment "green fluorescent protein Mutant"
113.1.1.1.1.1 1mkaA alignment "beta-hydroxydecanoyl thiol ester dehydrase (beta-hydroxydecanoyl acp dehydrase)"
113.1.1.1.2.1 ____1bvq alignment "4-hydroxybenzoyl coa thioesterase biological_unit"
114.1.1.1.1.1 4gatA alignment "area fragment DNA"
115.1.1.1.1.1 1chc alignment "Equine herpes virus-1 (c3hc4, or ring domain) (NMR, 1 structure)"
115.1.1.2.1.1 ___1rmd alignment "rag1 fragment (v(d)j recombination activating protein 1)"
116.1.1.1.1.1 2arcA alignment "arabinose operon regulatory protein fragment (arac) biological_unit"
116.1.1.2.1.1 ___1rgs alignment "camp dependent protein kinase fragment (ri(alpha)) Mutant"
116.1.1.2.1.2 _____2cgpC alignment "DNA catabolite gene activator protein biological_unit"
116.2.1.1.1.1 _1ahsA alignment "african horse sickness virus (serotype 4) vp7 fragment"
116.2.1.1.1.1 ______1bvp1 alignment "Bluetongue virus 10 (usa) vp7 (btv-10 (usa) vp7)"
116.2.1.2.1.1 ___1pmi alignment "phosphomannose isomerase (pmi)"
116.2.1.2.1.2 _____2cau alignment "canavalin (jack bean vicilin) biological_unit"
117.1.1.1.1.1 2end alignment "Endonuclease v"
117.2.1.1.1.1 _2frvB alignment "periplasmic hydrogenase (cytochrome-c3 hydrogenase) biological_unit"
118.1.1.1.1.1 1tafA alignment "tfiid tbp associated factor 42 fragment Mutant tfiid tbp associated factor 62 fragment"
118.1.1.1.2.1 ____1a7w alignment "histone hmfb biological_unit"
118.1.1.1.3.1 ____1tafB alignment "tfiid tbp associated factor 42 fragment Mutant tfiid tbp associated factor 62 fragment"
118.1.1.1.4.1 ____1aoiA alignment "histone h3 histone h4 histone h2a histone h2b Mutant DNA (5'(atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctccatcaa aaggcatgttcagctgaattcagctgaacatgccttttgatggagcagtttccaaatac acttttggtagaatctgcaggtggatattgat)3')"
118.1.1.1.5.1 ____1aoiB alignment "histone h3 histone h4 histone h2a histone h2b Mutant DNA (5'(atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctccatcaa aaggcatgttcagctgaattcagctgaacatgccttttgatggagcagtttccaaatac acttttggtagaatctgcaggtggatattgat)3')"
118.1.1.1.6.1 ____1aoiD alignment "histone h3 histone h4 histone h2a histone h2b Mutant DNA (5'(atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctccatcaa aaggcatgttcagctgaattcagctgaacatgccttttgatggagcagtttccaaatac acttttggtagaatctgcaggtggatattgat)3')"
118.1.1.1.7.1 ____1aoiC alignment "histone h3 histone h4 histone h2a histone h2b Mutant DNA (5'(atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctccatcaa aaggcatgttcagctgaattcagctgaacatgccttttgatggagcagtttccaaatac acttttggtagaatctgcaggtggatattgat)3')"
119.1.1.1.1.1 1kdxA alignment "cbp fragment (creb-binding protein) creb fragment (camp-response element binding protein, creb)"
119.1.2.1.1.1 __1efuB alignment "elongation factor tu (elongation factor for transfer, heat unstable, ef-tu) biological_unit elongation factor ts (elongation factor for transfer, heat stable, ef-ts) biological_unit"
119.1.2.1.2.1 ____1tfe alignment "elongation factor ts fragment"
119.2.1.1.1.1 _1ytfB alignment "yeast tata-box binding protein fragment (ytbp) yeast transcription factor iia (ytfiia, toa1TOA2) cyc1 tata-box DNA"
119.2.2.1.1.1 __1mslA alignment "mechanosensitive ion channel (mscl) biological_unit"
119.2.3.1.1.1 __1lre alignment "receptor-associated protein fragment (rap, low density lipoprotein receptor related protein, alpha=2=macroglobulin receptor associated protein)"
119.2.3.2.1.1 ___1bj5 alignment "human serum albumin biological_unit"
120.1.1.1.1.1 2cbp alignment "cucumber basic protein"
120.1.1.2.1.1 ___1nwpA alignment "azurin"
120.1.1.2.2.1 ____1rcy alignment "rusticyanin biological_unit"
120.1.1.2.3.1 ____1aozA alignment "Ascorbate oxidase"
120.1.1.2.3.1 ______1kcw alignment "ceruloplasmin biological_unit"
120.1.1.2.3.1 ______1nif alignment "nitrite reductase"
120.1.1.2.3.1 ______1a65A alignment "laccase biological_unit"
120.1.1.2.4.1 ____1cyx alignment "cyoa fragment Mutant biological_unit"
120.1.1.2.4.1 ______2occB alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
120.1.1.2.5.1 ____1plc alignment "Plastocyanin (cu2+, ph 6.0)"
120.1.1.2.5.2 _____7paz alignment "pseudoazurin Mutant biological_unit"
120.1.1.2.5.3 _____1aac alignment "amicyanin"
121.1.1.1.1.1 1ncs alignment "transcriptional factor swi5 fragment (peptide m30f)"
121.2.1.1.1.1 _1sp2 alignment "sp1f2 fragment (transcription factor sp1)"
121.2.2.1.1.1 __1zfd alignment "swi5 fragment"
122.1.1.1.1.1 1bnx alignment "band 3 fragment (sao) Mutant biological_unit"
122.2.1.1.1.1 _1opp alignment "apolipoprotein c-i fragment (apo-ci)"
123.1.1.1.1.1 1a1d alignment "RNA polymerase fragment"
124.1.1.1.1.1 1914 alignment "signal recognition particle srp914 HETERODIMER fragment (srp914, ALU BM, RBD) biological_unit"
124.2.1.1.1.1 _1b77A alignment "sliding clamp (gp45) biological_unit"
124.2.1.1.1.2 _____1plq alignment "Proliferating cell nuclear antigen (pcna) (synchrotron x-ray diffraction)"
124.2.1.1.1.2 ______2polA alignment "Pol iii (beta subunit)"
125.1.1.1.1.1 1lgr alignment "Glutamine synthetase complexed with amp"
125.1.1.2.1.1 ___1bg0 alignment "arginine kinase biological_unit"
126.1.1.1.1.1 1jvr alignment "human t-cell leukemia virus type ii matrix protein (htlv-ii ma, ma)"
127.1.1.1.1.1 1hiwA alignment "hiv-1 matrix protein fragment (hiv-1 ma, p17, matrix protein)"
127.2.1.1.1.1 _1bax alignment "m-pmv matrix protein (m-pmv ma)"
127.3.1.1.1.1 _1a6s alignment "gag polyprotein fragment Mutant"
128.1.1.1.1.1 1yua alignment "topoisomerase i fragment"
129.1.1.1.1.1 1bhu alignment "metalloproteinase inhibitor (smpi) biological_unit"
129.2.1.1.1.1 _1ag4 alignment "spherulin 3a (s3a)"
129.2.1.1.2.1 ____1prs alignment "Development-specific protein s (spore coat protein s) (NMR, 30 structures)"
129.2.1.1.2.2 _____1amm alignment "gamma b-crystallin (gamma ii-crystallin)"
129.2.1.1.2.2 ______2bb2 alignment "Beta-b2-crystallin"
129.2.1.1.3.1 ____1wkt alignment "yeast killer toxin"
130.1.1.1.1.1 1hoe alignment "Alpha-Amylase inhibitor hoe-467A"
130.2.1.1.1.1 _1wapA alignment "Trp RNA-binding attenuation protein complexed with l-tryptophan"
131.1.1.1.1.1 1aol alignment "gp70 fragment (su)"
132.1.1.1.1.1 1ygs alignment "smad4 fragment (dpc4, hmad4, madr4)"
133.1.1.1.1.1 1fvl alignment "flavoridin"
134.1.1.1.1.1 1kst alignment "Kistrin (NMR, 8 structures)"
135.1.1.1.1.1 1bam alignment "Restriction endonuclease bamhi"
135.1.2.1.1.1 __1cfr alignment "restriction endonuclease fragment (cfr10i)"
135.1.2.2.1.1 ___1eriA alignment "Eco ri endonuclease (endodeoxyribonuclease ecori) complexed with DNA (tcgcgaattcgcg)"
136.1.1.1.1.1 1ciy alignment "cryia(a)"
136.1.1.1.2.1 ____1vmoA alignment "Vitelline membrane outer layer protein i"
136.1.1.1.2.2 _____1jotA alignment "agglutinin"
137.1.1.1.1.1 1gpc alignment "core gp32 (gp32Iii)"
137.2.1.1.1.1 _1gvp alignment "gene v protein biological_unit"
137.2.1.1.2.1 ____1pfsA alignment "pf3 single-stranded DNA binding protein (pf3 ssdbp) Mutant"
138.1.1.1.1.1 1bp1 alignment "bactericidalPERMEABILITY-INCREASING PROTEIN (bpi) Mutant biological_unit"
138.1.1.1.2.1 ____1opy alignment "delta5-3-ketosteroid iosmerase (ksi, 3-ketosteroid isomerase)"
138.1.1.1.2.2 _____1ounA alignment "nuclear transport factor 2 (pp15, b2)"
138.1.1.1.2.3 _____2std alignment "scytalone dehydratase"
138.1.1.1.2.4 _____1ndoB alignment "napthalene 1,2-dioxygenase biological_unit"
138.1.2.1.1.1 __1oacA alignment "copper amine oxidase"
138.1.2.1.1.1 ______1ksiB alignment "copper amine oxidase biological_unit"
138.1.2.1.1.1 ______1a2vA alignment "methylamine oxidase biological_unit"
138.1.2.2.1.1 ___1cewI alignment "Cystatin"
138.1.2.2.2.1 ____1molA alignment "Monellin (single-chain, fused)"
138.1.2.2.2.2 _____1stfI alignment "Papain (cys 25 carboxymethylated) complexed with the inhibitor stefin b (cystatin b) mutant with cys i 8 replaced by ser (c(i 8)s)"
139.1.1.1.1.1 1jpc alignment "agglutinin (snowdrop lectin)"
139.2.1.1.1.1 _1gen alignment "gelatinase a fragment (mmp-2, 72kd type iv collagenase)"
139.2.1.1.1.1 ______1hxn alignment "hemopexin (hpx)"
139.2.1.2.1.1 ___1eut alignment "sialidase (neuraminidase)"
139.2.1.2.1.1 ______1kit alignment "sialidase (neuraminidase)"
139.2.1.2.1.1 ______2qwc alignment "neuraminidase fragment (sialidase) Mutant biological_unit"
139.2.1.2.1.1 ______3sil alignment "sialidase Mutant"
139.2.1.2.1.1 ______2sli alignment "intramolecular trans-sialidase fragment"
139.2.1.2.2.1 ____1aomB alignment "nitrite reductase biological_unit"
139.2.1.2.2.1 ______2bbkH alignment "Methylamine dehydrogenase (madh)"
139.2.1.2.2.2 _____1gof alignment "Galactose oxidase (ph 4.5)"
139.2.1.2.2.2 ______1tbgA alignment "transducin fragment (guanine nucleotide-binding protein g) transducin fragment (guanine nucleotide-binding protein g)"
139.2.1.2.2.2 ______1bpoA alignment "clathrin heavy-chain fragment"
139.2.1.2.2.3 _____1b2nA alignment "methanol dehydrogenase (medh) biological_unit"
139.2.1.2.3.1 ____1a12A alignment "regulator of chromosome condensation 1 fragment (rcc1) biological_unit"
140.1.1.1.1.1 1bqv alignment "ets-1 fragment (pnt, pointed) biological_unit"
141.1.1.1.1.1 1agrE alignment "guanine nucleotide-binding protein g(i) fragment (gi-alpha-1) biological_unit rgs4 (regulator of g-protein signalling 4) biological_unit"
142.1.1.1.1.1 1acp alignment "Acyl carrier protein (NMR, 2 structures)"
143.1.1.1.1.1 1cei alignment "colicin e7 immunity protein (imme7)"
144.1.1.1.1.1 1lba alignment "Lysozyme mutant with ala 6 replaced by lys and residues 2 - 5 deleted (del(2-5),A6k)"
145.1.1.1.1.1 1akz alignment "uracil-DNA glycosylase (udg, ung) Mutant biological_unit"
145.1.1.1.2.1 ____1mugA alignment "g:tU SPECIFIC DNA GLYCOSYLASE"
146.1.1.1.1.1 1smnA alignment "extracellular endonuclease"
147.1.1.1.1.1 2cba alignment "Carbonic anhydrase ii (50 mm tris, 3 m ammonium sulfate, ph 7.8)"
148.1.1.1.1.1 1umuA alignment "umud' fragment Mutant"
149.1.1.1.1.1 1bym alignment "diphtheria toxin repressor fragment (dtxr(130-226))"
150.1.1.1.1.1 1zwd alignment "parathyroid hormone fragment (hpth(3-37))"
151.1.1.1.1.1 1zwf alignment "parathyroid hormone fragment (n-acetyl-hpth(4-37)) Mutant"
152.1.1.1.1.1 4pah alignment "phenylalanine hydroxylase fragment"
153.1.1.1.1.1 1mnmA alignment "mcm1 transcriptional regulator fragment (pheromone receptor transcription factor) biological_unit mat alpha-2 transcriptional repressor fragment (mating-type protein alpha-2) ste6 operator DNA"
153.2.1.1.1.1 _1a6jA alignment "nitrogen regulatory iia protein (iia-nitrogen, enzyme iia-ntr)"
153.2.1.1.1.1 ______1a3aA alignment "mannitol-specific eii fragment"
154.1.1.1.1.1 1aua alignment "phosphatidylinositol transfer protein sec14p biological_unit"
154.1.2.1.1.1 __1hjp alignment "ruva biological_unit"
155.1.1.1.1.1 1bg8A alignment "hdea (10k-s protein, hypothetical protein a)"
155.2.1.1.1.1 _1zeiA alignment "insulin (b28asp-x-mcr) Mutant biological_unit"
156.1.1.1.1.1 2pkaA alignment "Kallikrein a"
156.1.1.2.1.1 ___2sga alignment "Proteinase a (component of the extracellular filtrate pronase) (SGPA) (e.C. number not assigned)"
156.1.1.2.1.2 _____1agjA alignment "epidermolytic toxin a"
156.1.1.2.1.2 ______1arb alignment "Achromobacter protease i"
156.1.1.2.1.2 ______1a7s alignment "heparin binding protein (cap37, azurocidin) biological_unit"
156.1.1.2.1.2 ______5ptp alignment "beta trypsin"
156.1.1.2.1.3 _____1havA alignment "hepatitis a virus 3c proteinase (picornain 3c) Mutant"
156.1.1.2.1.4 _____1jxpA alignment "ns3 serine protease (hydrolase) ns4a (structural protein ns4a)"
156.1.1.2.1.5 _____1svpA alignment "sindbis virus capsid protein fragment (sindbis virus coat protein) Mutant"
157.1.1.1.1.1 1axj alignment "fmn-binding protein biological_unit"
157.2.1.1.1.1 _1pcfA alignment "transcriptional coactivator pc4 fragment (p15)"
158.1.1.1.1.1 1sra alignment "sparc fragment (bm-40, osteonectin)"
158.1.1.1.2.1 ____2sas alignment "Sarcoplasmic calcium-binding protein (iso type ii)"
158.1.1.1.2.2 _____2scpA alignment "Sarcoplasmic calcium-binding protein"
158.1.2.1.1.1 __1a03A alignment "calcyclin (rabbit, ca2+) (2a9, cacy, s100a6, pra) biological_unit"
158.1.2.2.1.1 ___2pvb alignment "parvalbumin"
158.1.2.2.2.1 ____1ncx alignment "troponin c"
158.1.2.2.2.2 _____1cll alignment "Calmodulin (vertebrate)"
158.1.2.2.2.3 _____1auiB alignment "serineTHREONINE PHOSPHATASE 2B (calcineurin)"
158.1.2.2.3.1 ____1psrA alignment "psoriasin (s100a7)"
158.1.2.2.4.1 ____4icb alignment "Calbindin d9k (minor a form)"
158.1.2.2.5.1 ____1rec alignment "Recoverin (calcium sensor in vision)"
158.1.2.2.6.1 ____1wdcB alignment "scallop myosin fragment"
158.1.2.2.6.2 _____1wdcC alignment "scallop myosin fragment"
158.1.2.2.7.1 ____1alvA alignment "calpain fragment (s-camld)"
159.1.1.1.1.1 2af8 alignment "actinorhodin polyketide synthase acyl carrier protein (act acp, acti orf3)"
159.2.1.1.1.1 _1b4cA alignment "s-100 protein, beta chain (s100b, s100beta) biological_unit"
159.3.1.1.1.1 _1gab alignment "protein pab fragment (ga module)"
160.1.1.1.1.1 1etb1 alignment "Transthyretin (prealbumin) mutant with ala 109 replaced by thr (a109t) complexed with thyroxine (3,5,3',5'-tetraiodo-l-thyronine)"
160.1.1.2.1.1 ___3pchA alignment "protocatechuate 3,4-dioxygenase biological_unit"
160.1.1.2.1.1 ______3pchM alignment "protocatechuate 3,4-dioxygenase biological_unit"
160.2.1.1.1.1 _1thv alignment "Thaumatin isoform a (orthorhombic crystal form)"
160.2.2.1.1.1 __1pfo alignment "perfringolysin o (pfo)"
160.2.2.2.1.1 ___1vcbC alignment "elongin b fragment elongin c fragment vhl fragment"
161.1.1.1.1.1 1ehs alignment "heat-stable enterotoxin b (stb)"
162.1.1.1.1.1 1hucA alignment "Cathepsin b"
162.2.1.1.1.1 _1vib alignment "neurotoxin b-iv"
163.1.1.1.1.1 1vhrA alignment "human vh1-related dual-specificity phosphatase vhr (vhr)"
163.1.1.1.1.2 _____1pty alignment "protein tyrosine phosphatase 1b (ptp1b) Mutant"
163.1.1.1.1.2 ______1ytw alignment "yersinia protein tyrosine phosphatase fragment (yop51, yop2b, pasteurella x, ptpase, yop51delta162)"
163.1.1.1.1.2 ______2shpA alignment "shp-2 (syp, shptp-2) Mutant"
163.1.2.1.1.1 __1b47A alignment "cbl fragment (proto-oncogene c-cbl)"
163.1.2.1.2.1 ____1lkkA alignment "human p56 tyrosine kinase fragment phosphotyrosyl peptide ac-ptyr-glu-glu-ile"
163.1.2.1.2.2 _____1a81A alignment "syk kinase fragment t-cell surface glycoprotein cd3 epsilon chain (itam peptide)"
163.1.2.1.2.3 _____1griA alignment "growth factor bound protein 2"
163.1.2.1.2.4 _____1mil alignment "shc adaptor protein fragment"
164.1.1.1.1.1 1a48 alignment "phosphoribosylaminoimidazole-succinocarboxamide synthase (saicar synthetase) biological_unit"
164.2.1.1.1.1 _1bo1A alignment "phosphatidylinositol phosphate kinase iibeta (pipk) biological_unit"
164.2.1.2.1.1 ___1a6o alignment "protein kinase ck2ALPHA-SUBUNIT"
164.2.1.2.1.1 ______1cdkA alignment "camp-dependent protein kinase (protein kinase a) protein kinase inhibitor (pki(5-24))"
164.2.1.2.1.1 ______1csn alignment "casein kinase-1"
164.2.1.2.1.1 ______1fmk alignment "tyrosine-protein kinase src fragment (c-src, p60-src)"
164.2.1.2.1.1 ______1kobA alignment "twitchin fragment"
164.2.1.2.1.1 ______1p38 alignment "map kinase p38 (mitogen activated protein kinase) Mutant"
164.2.1.2.1.1 ______1fgkA alignment "fgf receptor 1 fragment (fgfr1k, fibroblast growth factor receptor 1) Mutant"
165.1.1.1.1.1 1sfe alignment "ada o6-methylguanine-DNA methyltransferase fragment"
166.1.1.1.1.1 1b7eA alignment "transposase inhibitor protein from tn5 biological_unit"
166.1.1.1.2.1 ____1bco alignment "bacteriophage mu transposase (mua domain ii)"
166.1.1.1.2.2 _____1vsd alignment "integrase fragment"
166.1.1.1.2.2 ______1bisA alignment "hiv-1 integrase fragment Mutant biological_unit"
166.1.2.1.1.1 __1hjrA alignment "Holliday junction resolvase (ruvc)"
166.1.2.1.2.1 ____1glcG alignment "Glycerol kinase complexed with the (escherichia coli) glucose-specific factor iii (iii-glc), glycerol-3-phosphate, adenosine diphosphate, mg(ii) and zn(ii)"
166.1.2.1.2.2 _____1ba1 alignment "heat-shock cognate 70kd protein fragment Mutant"
166.1.2.1.2.2 ______2btfA alignment "Beta-actin-profilin complex"
166.1.2.1.2.3 _____2yhx alignment "Yeast hexokinase b complex with ortho-toluoylglucosamine"
166.1.2.1.2.3 ______1hkcA alignment "d-glucose 6-phosphotransferase (hexokinase i, hexokinase type i, human brain hexokinase) biological_unit"
167.1.1.1.1.1 1aa7A alignment "influenza virus matrix protein biological_unit"
167.2.1.1.1.1 _1fc2C alignment "Immunoglobulin fc and fragment b of protein a complex"
167.3.1.1.1.1 _1rfbA alignment "Interferon gamma (bovine, recombinant)"
168.1.1.1.1.1 1aca alignment "Acyl-coenzyme a binding protein (acbp) complex with palmitoyl-coenzyme a (NMR, 20 structures)"
168.2.1.1.1.1 _1utg alignment "Uteroglobin (oxidized)"
169.1.1.1.1.1 1avyB alignment "fibritin fragment (gpwac m) Mutant biological_unit"
169.2.1.1.1.1 _1avyC alignment "fibritin fragment (gpwac m) Mutant biological_unit"
170.1.1.1.1.1 1jwe alignment "dnab helicase fragment"
170.2.1.1.1.1 _1vsgA alignment "Variant surface glycoprotein (n-terminal domain)"
170.2.1.1.1.1 ______2vsgA alignment "variant surface glycoprotein iltat 1.24 fragment (vsg) biological_unit"
171.1.1.1.1.1 1vaoA alignment "vanillyl-alcohol oxidase biological_unit"
171.1.1.1.1.2 _____2mbr alignment "uridine diphospho-n-acetylenolpyruvylglucosamine reductase (murb)"
172.1.1.1.1.1 1a1tA alignment "nucleocapsid protein sl3 stem-loop RNA"
173.1.1.1.1.1 1mfs alignment "hiv-1 nucleocapsid protein fragment"
174.1.1.1.1.1 1fdm alignment "fd major coat protein (fd coat protein)"
175.1.1.1.1.1 1hth alignment "cyclic parathyroid hormone fragment Mutant"
176.1.1.1.1.1 1pnbA alignment "napin bnib"
177.1.1.1.1.1 1zwc alignment "parathyroid hormone fragment (bpth(1-37))"
178.1.1.1.1.1 1bzb alignment "calcitonin"
179.1.1.1.1.1 1bku alignment "calcitonin"
180.1.1.1.1.1 1daaA alignment "d-amino acid aminotransferase (d-alanine aminotransferase)"
180.1.2.1.1.1 __1bxe alignment "ribosomal protein l22 Mutant"
181.1.1.1.1.1 1ctt alignment "Cytidine deaminase (cda) complexed with 3,4-dihydrozebularine (dhz)"
181.1.2.1.1.1 __2chsA alignment "Chorismate mutase"
182.1.1.1.1.1 1uby alignment "farnesyl diphosphate synthase (fps) Mutant biological_unit"
182.1.1.1.1.2 _____1ps1A alignment "pentalenene synthase biological_unit"
182.1.1.1.1.2 ______5eat alignment "5-epi-aristolochene synthase (5-epi-aristolochene cyclase) biological_unit"
182.2.1.1.1.1 _1clc alignment "endoglucanase celd (1,4-beta-d-glucan-glucanohydrolase, cellulase endo-1,4-beta-glucanase d)"
182.2.1.1.1.1 ______1tf4A alignment "t. fusca endoEXO-CELLULASE E4 CATALYTIC DOMAIN and cellulose-binding domain fragment (endo-1,4-beta-d-glucanase)"
182.2.1.1.1.2 _____1ayx alignment "glucoamylase"
182.2.1.1.1.2 ______1cem alignment "cellulase cela (1,4-beta-d-glucan-glucanohydrolase) fragment (endo-1,4-beta-glucanase a)"
182.2.1.1.1.3 _____1c3d alignment "c3d Mutant biological_unit"
182.2.1.1.1.4 _____1ft1B alignment "protein farnesyltransferase"
182.2.1.1.1.4 ______2sqcA alignment "squalene-hopene cyclase Mutant biological_unit"
182.3.1.1.1.1 _1a17 alignment "serineTHREONINE PROTEIN PHOSPHATASE 5 fragment (tetratricopeptide, trp)"
182.3.1.1.2.1 ____14psA alignment "14-3-3 protein zetaDELTA biological_unit phosphopeptide"
182.3.2.1.1.1 __1mtyG alignment "methane monooxygenase hydroxylase biological_unit"
182.3.2.2.1.1 ___2occE alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
182.3.3.1.1.1 __1bkdS alignment "h-ras fragment (p21) son of sevenless-1 fragment (sos)"
182.3.4.1.1.1 __1lrv alignment "leucine-rich repeat variant (lrv) biological_unit"
182.3.4.1.2.1 ____3bct alignment "beta-catenin fragment"
182.3.4.1.2.1 ______1bk5A alignment "karyopherin alpha fragment (importin alpha, srp1p)"
182.3.4.1.2.1 ______1b3uA alignment "protein phosphatase pp2a fragment"
182.3.4.1.3.1 ____1ft1A alignment "protein farnesyltransferase"
183.1.1.1.1.1 1rboC alignment "ribulose bisphosphate carboxylaseOXYGENASE (rubisco) biological_unit"
184.1.1.1.1.1 1whtB alignment "Serine carboxypeptidase ii complexed with l-benzylsuccinate"
184.2.1.1.1.1 _1lvk alignment "myosin fragment Mutant"
184.2.1.1.2.1 ____1bg2 alignment "kinesin fragment"
185.1.1.1.1.1 1kjs alignment "c5a (complement c5a)"
186.1.1.1.1.1 1ak4C alignment "cyclophilin a biological_unit hiv-1 capsid fragment Mutant biological_unit"
186.1.1.1.1.2 _____1eia alignment "eiav capsid protein p26"
187.1.1.1.1.1 1lis alignment "Lysin"
188.1.1.1.1.1 1ytfC alignment "yeast tata-box binding protein fragment (ytbp) yeast transcription factor iia (ytfiia, toa1TOA2) cyc1 tata-box DNA"
188.1.1.1.2.1 ____1ytfD alignment "yeast tata-box binding protein fragment (ytbp) yeast transcription factor iia (ytfiia, toa1TOA2) cyc1 tata-box DNA"
189.1.1.1.1.1 1uch alignment "ubiquitin c-terminal hydrolase uch-l3 (uch-l3,Dub) biological_unit"
190.1.1.1.1.1 1cv8 alignment "staphopain (thiol proteinase from staphylococcus aureus v-8)"
190.1.1.1.2.1 ____3gcb alignment "gal6 (ybh, yeast bleomycin hydrolase) Mutant biological_unit"
190.1.1.1.2.2 _____1ppn alignment "Papain cys-25 with bound atom"
190.1.1.1.2.2 ______1theB alignment "cathepsin b Mutant"
191.1.1.1.1.1 1ubpA alignment "urease (urea aminohydrolase)"
191.2.1.1.1.1 _1bkq alignment "protein inhibitor of neuronal nitric oxide synthase (pin)"
192.1.1.1.1.1 1ixmA alignment "sporulation response regulatory protein fragment (spo0b)"
192.2.1.1.1.1 _1zbdB alignment "rab-3a fragment (ras-related protein rab3a) Mutant rabphilin-3a fragment Mutant"
192.3.1.1.1.1 _1vpc alignment "vpr protein fragment (vpr hiv-1 (lai))"
193.1.1.1.1.1 2tysB alignment "tryptophan synthase Mutant biological_unit"
193.1.1.1.1.1 ______1tdj alignment "biosynthetic threonine deaminase (threonine dehydratase) biological_unit"
194.1.1.1.1.1 1afwA alignment "3-ketoacetyl-coa thiolase biological_unit"
194.1.1.1.1.1 ______1kas alignment "beta-ketoacyl acp synthase ii biological_unit"
195.1.1.1.1.1 1sis alignment "Scorpion insectotoxin i5a (NMR, 10 structures)"
196.1.1.1.1.1 1a9v alignment "mite allergen der p 2 Mutant"
197.1.1.1.1.1 2ezh alignment "transposase fragment"
197.2.1.1.1.1 _1nkl alignment "nk-lysin"
197.2.2.1.1.1 __2btvA alignment "vp3 fragment (t2) biological_unit vp7 fragment (t13) biological_unit"
198.1.1.1.1.1 1avmA alignment "superoxide dismutase (sod) biological_unit"
199.1.1.1.1.1 1hdj alignment "human hsp40 fragment (hdj-1)"
200.1.1.1.1.1 1g3p alignment "minor coat protein fragment (g3p) biological_unit"
201.1.1.1.1.1 2fn2 alignment "fibronectin fragment"
202.1.1.1.1.1 1iba alignment "glucose permease fragment"
203.1.1.1.1.1 1bp7A alignment "i-crei (DNA endonuclease i-crei) biological_unit DNA (homing site)"
203.2.1.1.1.1 _1am2 alignment "mxe gyra intein Mutant"
203.2.1.1.1.1 ______1at0 alignment "17-hedgehog fragment"
203.2.1.1.2.1 ____1vdeA alignment "pi-scei"
203.2.1.1.2.2 _____1b24A alignment "i-dmoi biological_unit"
204.1.1.1.1.1 1psm alignment "Spam-h1 (residues 90 - 127 of the secreted polymorphic antigen associated with merozoites (spam) (90% h2o10% D2O, PH 4.9, 275 - 281K) (NMR, 20 STRUCTURES)"
204.2.1.1.1.1 _1qcrK alignment "ubiquinol cytochrome c oxidoreductase (cytochrome bc1, qcr) biological_unit"
205.1.1.1.1.1 1b0nB alignment "sinr protein biological_unit sini protein biological_unit"
206.1.1.1.1.1 1hgeB alignment "Hemagglutinin (bromelain digested) mutant with gly 135 replaced by arg (g135r) in ha1 chains complex with alpha-2-o-methyl-5-n-acetyl-alpha-d-neuraminic acid"
206.2.1.1.1.1 _1olgA alignment "P53 (oligomerization domain) (NMR, minimized average structure)"
207.1.1.1.1.1 1u9aA alignment "ubc9 (ubiquitin-conjugating enzyme)"
208.1.1.1.1.1 2bb8 alignment "integrase fragment"
208.1.2.1.1.1 __2gcc alignment "aterf1 fragment"
209.1.1.1.1.1 1cd31 alignment "scaffolding protein gpd capsid protein gpf spike protein gpg scaffolding protein gpb"
210.1.1.1.1.1 1bl0A alignment "mara fragment DNA"
210.2.1.1.1.1 _1ae9A alignment "lambda integrase fragment Mutant"
210.2.1.1.1.2 _____1crxA alignment "cre recombinase DNA"
210.2.1.1.1.3 _____1aihA alignment "hp1 integrase fragment"
210.2.1.1.1.4 _____1a0p alignment "site-specific recombinase xerd"
211.1.1.1.1.1 1pru alignment "purine repressor fragment"
211.1.2.1.1.1 __1uxc alignment "fructose repressor fragment (frur (1-57)) Mutant"
212.1.1.1.1.1 1shcA alignment "shc fragment trka receptor phosphopeptide"
212.1.1.1.2.1 ____1x11A alignment "x11 fragment 13-mer peptide"
212.1.1.1.2.2 _____2nmbA alignment "numb protein fragment gppy peptide"
212.1.1.1.3.1 ____1irsA alignment "irs-1 fragment (insulin receptor substrate 1) il-4 receptor phosphopeptide"
212.1.1.1.4.1 ____1btn alignment "beta-spectrin fragment"
212.1.1.1.4.2 _____1pls alignment "Pleckstrin (n-terminal pleckstrin homology domain) mutant with leu glu (his)6 added to the c terminus (ins(g105-lehhhhhh)) (NMR, 25 structures)"
212.1.1.1.4.3 _____1btkA alignment "bruton's tyrosine kinase fragment (bruton's agammaglobulinemia tyrosine kinase, btk) Mutant"
212.1.1.1.4.4 _____1dynA alignment "Dynamin (pleckstrin homology domain) (dynph)"
212.1.1.1.5.1 ____1dbh alignment "sos1 fragment (son of sevenless)"
212.1.1.1.6.1 ____1mai alignment "phospholipase c delta-1 fragment"
212.1.1.1.7.1 ____1bak alignment "g-protein coupled receptor kinase 2 fragment (grk-2, beta-adrenergic receptor kinase 1, beta-ark 1) Mutant"
213.1.1.1.1.1 1mroC alignment "methyl-coenzyme m reductase biological_unit"
214.1.1.1.1.1 1fleI alignment "elastase elafin (skin-derived antileukoproteinase (skalp))"
215.1.1.1.1.1 4cpaI alignment "Carboxypeptidase a=alpha= (cox) complex with potato carboxypeptidase a inhibitor"
216.1.1.1.1.1 1hph alignment "Human parathyroid hormone fragment 1 - 37 (hpth(1-37)) (NMR, 10 structures)"
217.1.1.1.1.1 2bbkL alignment "Methylamine dehydrogenase (madh)"
218.1.1.1.1.1 1mknA alignment "midkine fragment"
219.1.1.1.1.1 1bxyA alignment "ribosomal protein l30"
219.2.1.1.1.1 _1b33G alignment "allophycocyanin core-linker complex, apLc7.8 fragment (apc, ap 664, apLc8.9, apLc10, lc8.9, lc10) biological_unit"
220.1.1.1.1.1 2pil alignment "type 4 pilin (fimbriae) biological_unit"
220.2.1.1.1.1 _1chmA alignment "Creatine amidinohydrolase"
220.2.1.1.1.1 ______1xgsA alignment "methionine aminopeptidase biological_unit"
220.2.1.1.1.1 ______1az9 alignment "aminopeptidase p (ampp) biological_unit"
221.1.1.1.1.1 1aojA alignment "eps8 fragment (src homology domain) biological_unit"
222.1.1.1.1.1 1pprM alignment "peridinin-chlorophyll protein (pcp)"
223.1.1.1.1.1 1apyA alignment "aspartylglucosaminidase (aga, glycosylasparaginase)"
224.1.1.1.1.1 1ctdA alignment "Troponin c site iii - site iii homodimer (NMR, 7 structures)"
225.1.1.1.1.1 1ponA alignment "troponin c fragment"
225.1.2.1.1.1 __1ponB alignment "troponin c fragment"
226.1.1.1.1.1 1zmeC alignment "DNA proline utilization transcription activator fragment (put3)"
227.1.1.1.1.1 1d66A alignment "Gal4 (residues 1 - 65) complex with 19mer DNA"
227.1.2.1.1.1 __1pyc alignment "cyp1 fragment (hap1)"
228.1.1.1.1.1 1poa alignment "Phospholipase a2"
228.2.1.1.1.1 _1poc alignment "Phospholipase a2 complex with the transition-state analogue"
229.1.1.1.1.1 1beo alignment "beta-cryptogein (beta-elicitin of phytophthora cryptogea)"
229.2.1.1.1.1 _1hp8 alignment "hu-p8 Mutant"
230.1.1.1.1.1 1cyo alignment "Cytochrome b5 (oxidized)"
230.1.1.1.1.2 _____1soxA alignment "sulfite oxidase biological_unit"
231.1.1.1.1.1 1pbwA alignment "phosphatidylinositol 3-kinase fragment (rhogap domain)"
231.1.1.1.1.1 ______1tx4A alignment "p50-rhogap (gtpase-activating protein rhogap) transforming protein rhoa"
232.1.1.1.1.1 1pbv alignment "arno fragment (arf nucleotide-binding site opener)"
232.2.1.1.1.1 _1arv alignment "peroxidase"
232.2.1.1.1.1 ______1bgp alignment "barley grain peroxidase"
232.2.1.1.1.1 ______1ryc alignment "cytochrome c peroxidase Mutant"
232.3.1.1.1.1 _1abv alignment "delta subunit of the f1f0-atp synthase fragment"
232.3.2.1.1.1 __1wer alignment "p120gap fragment (gap-334, gapette)"
233.1.1.1.1.1 1qcrD alignment "ubiquinol cytochrome c oxidoreductase (cytochrome bc1, qcr) biological_unit"
234.1.1.1.1.1 1cbn alignment "Crambin"
235.1.1.1.1.1 1pauB alignment "apopain (caspase-3, cpp32, yama) ace-asp-glu-val-asp-cho"
236.1.1.1.1.1 1gw4 alignment "apoa-i fragment (apolipoprotein a-i)"
237.1.1.1.1.1 1rss alignment "ribosomal protein s7 Mutant"
237.2.1.1.1.1 _1huuA alignment "protein hu (bsb, ns) biological_unit"
238.1.1.1.1.1 1avpA alignment "adenoviral proteinase fragment (avp) biological_unit adenoviral proteinase fragment (pvic) biological_unit"
238.2.1.1.1.1 _2aop alignment "sulfite reductase hemoprotein (sirhp) biological_unit"
239.1.1.1.1.1 3ezm alignment "cyanovirin-n"
240.1.1.1.1.1 1hfh alignment "Factor h, 15th and 16th c-module pair (NMR, minimized averaged structure)"
240.2.1.1.1.1 _1fbr alignment "fibronectin"
240.2.1.1.2.1 ____1tpg alignment "t-plasminogen activator f1-g Mutant"
241.1.1.1.1.1 1knb alignment "Adenovirus type 5 fiber protein (receptor binding domain consisting of residues 386 - 581, knob domain)"
242.1.1.1.1.1 1tul alignment "tlp20"
242.1.1.1.2.1 ____1dun alignment "deoxyuridine 5'-triphosphate nucleoditohydrolase (dutpase, dutp pyrophosphatase) biological_unit"
242.1.1.1.2.2 _____1dupA alignment "deoxyuridine 5'-triphosphate nucleotidohydrolase (d-utpase)"
243.1.1.1.1.1 1cdcA alignment "cd2 (lfa-2)"
244.1.1.1.1.1 2ovo alignment "Ovomucoid third domain"
244.1.1.1.2.1 ____1tgsI alignment "Trypsinogen complex with porcine pancreatic secretory trypsin inhibitor"
244.1.1.1.3.1 ____1tbrR alignment "thrombin rhodniin"
244.1.1.1.4.1 ____1nubA alignment "basement membrane protein bm-40 fragment (osteonectin, sparc, secreted protein acidic and rich in cysteine) Mutant biological_unit"
245.1.1.1.1.1 1far alignment "raf-1 fragment"
245.1.1.1.2.1 ____1ptq alignment "protein kinase c delta type"
246.1.1.1.1.1 1aml alignment "amyloid a4"
247.1.1.1.1.1 1ba6 alignment "amyloid beta-peptide fragment Mutant"
248.1.1.1.1.1 1kveB alignment "smk toxin fragment"
249.1.1.1.1.1 1mrj alignment "Alpha-trichosanthin complexed with adenine"
250.1.1.1.1.1 1pyiA alignment "Pyrimidine pathway regulator 1 (ppr1) (residues 29 - 123) complexed with DNA and zinc"
251.1.1.1.1.1 1ron alignment "neuropeptide y (npy)"
252.1.1.1.1.1 2cpl alignment "Cyclophilin a"
253.1.1.1.1.1 1fkj alignment "fk506 binding protein (fkbp12)"
253.1.1.2.1.1 ___1pinA alignment "peptidyl-prolyl cis-trans isomerase (pin1) ala-pro dipeptide"
254.1.1.1.1.1 1baq alignment "antitermination factor nusb"
255.1.1.1.1.1 1aoa alignment "t-fimbrin fragment"
255.1.1.1.1.2 _____1bkrA alignment "spectrin beta chain fragment (calponin homology (ch) domain) biological_unit"
256.1.1.1.1.1 1nlr alignment "endo-1,4-beta-glucanase fragment (celb, celb2)"
257.1.1.1.1.1 1bwz alignment "diaminopimelate epimerase biological_unit"
258.1.1.1.1.1 1whi alignment "ribosomal protein l14"
258.2.1.1.1.1 _6prcH alignment "photosynthetic reaction center"
259.1.1.1.1.1 1wgjA alignment "inorganic pyrophosphatase (ppase) biological_unit"
259.1.1.1.1.1 ______2prd alignment "pyrophosphate phosphohydrolase"
260.1.1.1.1.1 1hqi alignment "phenol hydroxylase p2 protein biological_unit"
261.1.1.1.1.1 1bnb alignment "bovine neutrophil beta-defensin 12"
262.1.1.1.1.1 2bds alignment "BDS-I (NMR, 42 simulated annealing structures)"
262.2.1.1.1.1 _1sh1 alignment "Neurotoxin i (sh i) (NMR, minimized average structure)"
262.2.2.1.1.1 __1ahl alignment "anthopleurin-a (ap-a)"
263.1.1.1.1.1 1msk alignment "cobalamin-dependent methionine synthase fragment"
263.1.1.1.2.1 ____1zymA alignment "enzyme i fragment"
263.2.1.1.1.1 _1amj alignment "Aconitase complexed with sulfate and hydroxide"
263.2.1.2.1.1 ___1ass alignment "thermosome fragment"
263.2.1.2.2.1 ____1derA alignment "groel Mutant"
263.2.1.2.2.1 ______1a6dA alignment "thermosome biological_unit"
264.1.1.1.1.1 1bcpA alignment "pertussis toxin"
264.1.1.1.1.2 _____1lt3A alignment "heat-labile enterotoxin fragment (lt-i) Mutant biological_unit"
264.2.1.1.1.1 _1aerA alignment "exotoxin a fragment"
264.2.1.1.2.1 ____1ddt alignment "Diphtheria toxin (dimeric)"
264.2.1.1.3.1 ____1a26 alignment "poly (adp-ribose) polymerase fragment (parp-cf, poly(adp-ribose) transferase, poly (adp-ribose) synthetase)"
265.1.1.1.1.1 1tbgE alignment "transducin fragment (guanine nucleotide-binding protein g) transducin fragment (guanine nucleotide-binding protein g)"
266.1.1.1.1.1 1ioj alignment "apoc-i"
267.1.1.1.1.1 2adr alignment "adr1 fragment Mutant biological_unit"
268.1.1.1.1.1 2occG alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
269.1.1.1.1.1 2occD alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
269.2.1.1.1.1 _2occK alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
270.1.1.1.1.1 1rdr alignment "poliovirus 3d polymerase"
271.1.1.1.1.1 1zwa alignment "parathyroid hormone fragment (hpth(1-34))"
272.1.1.1.1.1 1efnB alignment "fyn tyrosine kinase fragment (src-homology 3 domain) Mutant biological_unit hiv-1 nef protein fragment Mutant"
273.1.1.1.1.1 1bo4A alignment "serratia marcescens aminoglycoside-3-n-acetyltransferase"
273.1.1.1.2.1 ____1nmtA alignment "n-myristoyl transferase biological_unit"
273.2.1.1.1.1 _1a7tA alignment "metallo-beta-lactamase (class b beta-lactamase) Mutant"
273.2.1.1.2.1 ____1bob alignment "histone acetyltransferase (hat1) biological_unit"
274.1.1.1.1.1 3crd alignment "raidd fragment"
274.1.2.1.1.1 __1ddf alignment "fas"
274.1.2.2.1.1 ___1ngr alignment "p75 low affinity neurotrophin receptor fragment"
274.1.2.2.2.1 ____1a1z alignment "fadd protein fragment (fas-associating death domain-containing protein) Mutant"
275.1.1.1.1.1 1chkA alignment "chitosanase (endochitosanase)"
275.1.1.1.2.1 ____1l92 alignment "Lysozyme mutant with cys 54 replaced by thr, cys 97 replaced by ala, leu 99 replaced by ile (c54t,C97a, l99i)"
275.2.1.1.1.1 _1ltm alignment "36 kda soluble lytic transglycosylase fragment (35 kd soluble lytic transglycosylase, slt35) biological_unit"
275.2.1.1.2.1 ____153l alignment "Lysozyme"
275.2.1.1.2.2 _____1sly alignment "70-kda soluble lytic transglycosylase (slt70, exomuramidase)"
275.2.1.1.3.1 ____1am7A alignment "lysozyme ec"
275.2.1.1.4.1 ____1cnsA alignment "chitinase"
275.2.1.1.5.1 ____3lzt alignment "lysozyme"
276.1.1.1.1.1 1eciA alignment "ectatomin"
277.1.1.1.1.1 1pnbB alignment "napin bnib"
278.1.1.1.1.1 1lepA alignment "chaperonin-10 (ml10)"
278.1.1.1.2.1 ____1g31A alignment "gp31 biological_unit"
279.1.1.1.1.1 1bgk alignment "bgk (potassium channel toxin bgk)"
280.1.1.1.1.1 1roo alignment "shk toxin (shktx)"
281.1.1.1.1.1 1mxb alignment "s-adenosylmethionine synthetase (mat, atp:l-methionine s-adenosyltransferase)"
282.1.1.1.1.1 1otfA alignment "4-oxalocrotonate tautomerase (4-oxalocrotonate isomerase)"
282.1.1.2.1.1 ___1otgA alignment "5-carboxymethyl-2-hydroxymuconate isomerase"
282.1.1.2.2.1 ____1dptA alignment "d-dopachrome tautomerase biological_unit"
283.1.1.1.1.1 1hyt alignment "Thermolysin complexed with benzylsuccinic acid (2(s)-benzyl-3-carboxypropionic acid)"
283.1.2.1.1.1 __1atlA alignment "atrolysin c (hemorrhagic toxin c, form d)"
283.1.2.1.2.1 ____1kuh alignment "zinc protease (neutral protease)"
283.1.2.1.2.2 _____1hfc alignment "Fibroblast collagenase"
283.1.2.1.2.2 ______1sat alignment "Molecule (serralysin, major metallo protease from serratia marcescens)"
283.1.2.1.2.3 _____1iae alignment "Astacin with zinc replaced by nickel(ii)"
283.1.2.1.3.1 ____1lml alignment "leishmanolysin (gp63 protein, psp)"
284.1.1.1.1.1 1bmx alignment "human immunodeficiency virus type 1 capsid fragment (hiv-1 p24 mhr peptide analog) Mutant"
285.1.1.1.1.1 1m6pA alignment "cation-dependent mannose-6-phosphate receptor fragment (cdmpr) Mutant biological_unit"
286.1.1.1.1.1 1cby alignment "delta-endotoxin cytb"
287.1.1.1.1.1 1rhs alignment "sulfur-substituted rhodanese biological_unit"
287.1.1.1.2.1 ____1c25 alignment "cdc25a fragment (m-phase inducer phosphatase 1) Mutant"
288.1.1.1.1.1 1mroA alignment "methyl-coenzyme m reductase biological_unit"
288.1.1.1.1.1 ______1mroB alignment "methyl-coenzyme m reductase biological_unit"
289.1.1.1.1.1 1aaf alignment "Hiv-1 nucleocapsid protein (mn isolate) (NMR, 20 structures)"
290.1.1.1.1.1 1extA alignment "tumor necrosis factor receptor fragment"
291.1.1.1.1.1 1pkp alignment "Ribosomal protein s5 (prokaryotic)"
291.2.1.1.1.1 _1a6f alignment "ribonuclease p protein (rnase p protein) Mutant"
292.1.1.1.1.1 1gnwA alignment "glutathione s-transferase biological_unit"
292.1.1.1.1.1 ______1pgtA alignment "glutathione s-transferase (gst, hgstp1-1[v104]) Mutant biological_unit"
292.1.1.1.1.1 ______1a0fA alignment "glutathione s-transferase fragment (gst, glutathione transferase) biological_unit"
292.1.1.1.1.1 ______1ljrA alignment "glutathione s-transferase (hgst t2-2) biological_unit"
292.1.1.1.1.1 ______1b8xA alignment "aml-1b fragment"
292.1.1.2.1.1 ___1aba alignment "Glutaredoxin mutant with val 15 replaced by gly and tyr 16 replaced by pro (v15g,Y16p)"
292.1.1.2.2.1 ____1kte alignment "thioltransferase"
292.2.1.1.1.1 _1fvkA alignment "disulfide bond formation protein (dsba)"
292.2.2.1.1.1 __1gp1A alignment "Glutathione peroxidase"
292.2.2.1.2.1 ____1prxA alignment "horf6 Mutant"
292.2.2.1.3.1 ____1bjx alignment "protein disulfide isomerase fragment"
292.2.2.1.4.1 ____1b9yC alignment "transducin fragment (gt beta) biological_unit transducin fragment (gt gamma) biological_unit phosducin (meka, pp33) biological_unit"
292.2.2.1.4.2 _____1erv alignment "thioredoxin Mutant"
292.2.2.1.4.2 ______1thx alignment "thioredoxin (thioredoxin 2)"
292.2.2.1.4.3 _____1a8y alignment "calsequestrin"
292.2.2.1.5.1 ____1a8l alignment "protein disulfide oxidoreductase"
293.1.1.1.1.1 1sluA alignment "ecotin (trypsin inhibitor) Mutant anionic trypsin Mutant"
294.1.1.1.1.1 1ycqA alignment "mdm2 (mdm2) p53 fragment"
295.1.1.1.1.1 1hryA alignment "human sry DNA"
295.1.1.2.1.1 ___1aab alignment "high mobility group protein fragment (hmga DNA-binding hmg-box domain a of rat hmg1) Mutant"
295.1.1.2.2.1 ____1hma alignment "Hmg-d (hmg-box domain, residues 2 - 74) (NMR, 20 structures)"
295.1.1.2.3.1 ____2lefA alignment "lymphoid enhancer-binding factor fragment (lef-1 hmg) Mutant biological_unit DNA fragment"
296.1.1.1.1.1 1a0hA alignment "meizothrombin fragment (desf1) d-phe-pro-arg (ppack)"
296.1.1.1.2.1 ____5hpgA alignment "plasminogen fragment"
297.1.1.1.1.1 2eng alignment "endoglucanase v"
297.2.1.1.1.1 _1bw4 alignment "Barwin, basic barley seed protein (NMR, 20 structures)"
297.2.2.1.1.1 __1aw8B alignment "l-aspartate-alpha-decarboxylase biological_unit"
297.2.2.1.2.1 ____1aa6 alignment "formate dehydrogenase h (fdh-h) biological_unit"
297.2.2.1.2.1 ______1dmr alignment "dmso reductase biological_unit"
298.1.1.1.1.1 1gatA alignment "Erythroid transcription factor gata-1 (zinc-containing DNA-binding domain) (NMR, minimized average structure)"
299.1.1.1.1.1 1kptA alignment "kp4 toxin (p4 toxin, kp4 killer toxin)"
300.1.1.1.1.1 1uba alignment "hhr23a fragment"
301.1.1.1.1.1 1bbl alignment "Dihydrolipoamide succinyltransferase (e3-binding domain) core from the 2-oxoglutarate dehydrogenase multienzyme complex of escherichia coli (NMR, minimized average structure)"
301.2.1.1.1.1 _1ebdC alignment "dihydrolipoamide dehydrogenase (e3bd) dihydrolipoamide acetyltransferase fragment"
302.1.1.1.1.1 1vcc alignment "DNA topoisomerase i fragment"
303.1.1.1.1.1 1gpr alignment "Glucose permease (domain iia)"
303.1.2.1.1.1 __1fyc alignment "dihydrolipoamide acetyltransferase (e2p) fragment"
303.1.2.2.1.1 ___1bdo alignment "acetyl-coa carboxylase fragment (functional fragment of biotin carboxyl carrier protein, bccpsc)"
303.1.2.2.2.1 ____1ghj alignment "e2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex fragment (e2)"
303.1.2.2.2.2 _____1iyu alignment "dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex fragment (e2p)"
303.1.2.2.3.1 ____1htp alignment "H-protein complexed with lipoic acid charged in methylamine"
304.1.1.1.1.1 1aqzA alignment "restrictocin"
304.1.1.1.1.2 _____9rnt alignment "Ribonuclease t=1= complex with ca==2+=="
304.1.1.2.1.1 ___1rgeA alignment "ribonuclease"
304.1.1.2.2.1 ____1b20A alignment "barnase biological_unit"
305.1.1.1.1.1 1aoeA alignment "dihydrofolate reductase (dhfr) biological_unit"
305.1.1.1.1.1 ______3dfr alignment "Dihydrofolate reductase complex with nadph and methotrexate"
305.1.1.1.1.1 ______1vdrA alignment "dihydrofolate reductase (dhfr)"
306.1.1.1.1.1 1tif alignment "translation initiation factor 3 (if3-n)"
307.1.1.1.1.1 1a1yI alignment "alcalase (subtilisin) subtilisin-chymotrypsin inhibitor-2 (ci-2a inhibitor)"
307.2.1.1.1.1 _1egpA alignment "eglin-c"
307.2.2.1.1.1 __1hymA alignment "hydrolyzed cucurbita maxima trypsin inhibitor v (cmti-v)"
308.1.1.1.1.1 1iieA alignment "hla-dr antigens associated invariant chain fragment (hla class ii histocompatibility antigen, gamma chain) biological_unit"
309.1.1.1.1.1 2occH alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
310.1.1.1.1.1 1hssA alignment "0.19 alpha-amylase inhibitor biological_unit"
311.1.1.1.1.1 1auuA alignment "sacy fragment"
312.1.1.1.1.1 1tnt alignment "Mu transposase (DNA-binding domain) (NMR, 33 structures)"
313.1.1.1.1.1 1dpe alignment "dipeptide-binding protein (dipeptide permease)"
313.1.1.1.1.1 ______1jevA alignment "oligo-peptide binding protein (oppa) peptide lys trp lys"
313.1.2.1.1.1 __1pda alignment "Porphobilinogen deaminase"
313.1.2.1.2.1 ____1lst alignment "Lysine-, arginine-, ornithine-binding protein (lao) complexed with lysine"
313.1.2.1.2.1 ______1gggB alignment "glutamine binding protein (glnbp)"
313.1.2.1.2.1 ______1gr2A alignment "glutamate receptor 2 fragment (glur-b, glur-2) biological_unit"
313.1.2.1.3.1 ____1cb6A alignment "lactoferrin biological_unit"
313.1.2.1.4.1 ____1mrp alignment "ferric iron binding protein (fbp, hita, hfbp, major iron regulated protein, mirp)"
313.1.2.1.4.1 ______1pot alignment "spermidinePUTRESCINE-BINDING PROTEIN (potd)"
313.1.2.1.4.1 ______1sbp alignment "Sulfate-binding protein"
313.1.2.1.4.1 ______4mbp alignment "maltodextrin binding protein"
313.1.2.1.4.1 ______3thi alignment "thiaminase i biological_unit"
313.1.2.1.4.2 _____1ixh alignment "phosphate-binding protein biological_unit"
313.1.2.1.4.2 ______1wod alignment "moda fragment"
313.1.2.1.4.2 ______1atg alignment "periplasmic molybdate-binding protein (moda)"
313.1.2.1.4.3 _____1al3 alignment "cys regulon transcriptional activator cysb fragment"
313.1.3.1.1.1 __1frpA alignment "Fructose-1,6-bisphosphatase (d-fructose-1,6-bisphosphate 1-phosphohydrolase) complexed with fructose-2,6-bisphosphate, adenosine monophosphate (amp), and zinc"
313.1.3.1.1.1 ______1imbA alignment "Inositol monophosphatase complexed with gadolinium and l-myo-inositol-1-phosphate"
313.1.3.1.1.1 ______1inp alignment "Inositol polyphosphate 1-phosphatase (1-ptase) (inositol-1,4-bisphosphate 1-phosphatase) complexed with magnesium"
314.1.1.1.1.1 1ovaA alignment "Ovalbumin (egg albumin)"
314.1.1.1.1.1 ______1sek alignment "serpin k biological_unit"
315.1.1.1.1.1 1as4B alignment "antichymotrypsin fragment (act) Mutant"
315.1.2.1.1.1 __7apiB alignment "Modified alpha=1=-Antitrypsin (modified alpha=1=-Proteinase inhibitor) (tetragonal form 1)"
315.1.3.1.1.1 __1hleB alignment "Horse leukocyte elastase inhibitor (hlei)"
316.1.1.1.1.1 1fxd alignment "Ferredoxin ii"
316.1.1.1.2.1 ____2fxb alignment "Ferredoxin"
316.1.1.1.3.1 ____2fdn alignment "ferredoxin"
316.1.1.1.4.1 ____7fd1 alignment "7-fe ferredoxin i (fd1) (fd1)"
316.1.1.1.5.1 ____1xer alignment "ferredoxin"
317.1.1.1.1.1 1klo alignment "laminin fragment"
318.1.1.1.1.1 1adn alignment "N-ada 10 (DNA methylphosphotriester repair domain, residues 1 - 92) (NMR, 14 structures)"
319.1.1.1.1.1 1kigI alignment "factor xa anticoagulant peptide (rtap)"
319.1.2.1.1.1 __1bpi alignment "Bovine pancreatic trypsin inhibitor (bpti) (crystal form ii)"
319.1.2.1.2.1 ____1tocR alignment "thrombin ornithodorin"
320.1.1.1.1.1 1vpu alignment "vpu protein fragment (vpu(39-81)) Mutant"
321.1.1.1.1.1 2nllB alignment "retinoic acid receptor fragment (rxr-alpha) thyroid hormone receptor fragment (tr-beta) thyroid response element DNA"
322.1.1.1.1.1 1b5fB alignment "cardosin a fragment"
322.2.1.1.1.1 _1bxo alignment "penicillopepsin"
322.2.1.1.1.1 ______1smrA alignment "Renin complex with the inhibitor ch-66"
322.2.1.1.1.1 ______1eagA alignment "aspartic proteinase (sap2 gene product) (sap2, candidapepsin)"
322.2.1.1.1.1 ______2rmpA alignment "mucoropepsin (mucor rennin, rhiomucor miehei aspartic proteinase) pepstatin"
322.2.1.1.2.1 ____1fmb alignment "eiav protease Mutant"
322.2.1.1.2.2 _____2rspB alignment "Rous sarcoma virus protease (RSV PR)"
322.2.1.1.2.3 _____1hvc alignment "Hiv-1 protease (tethered dimer linked by gly-gly-ser-ser-gly) complexed with a-76928"
323.1.1.1.1.1 1axh alignment "atracotoxin-hvi (actx-hvi)"
324.1.1.1.1.1 1aiw alignment "endoglucanase z fragment (cbdegz) Mutant biological_unit"
325.1.1.1.1.1 1onc alignment "P-30 protein"
325.1.1.1.1.2 _____7rsa alignment "Ribonuclease a (phosphate-free)"
326.1.1.1.1.1 3fib alignment "fibrinogen gamma chain residues fragment"
327.1.1.1.1.1 1div alignment "ribosomal protein l9 biological_unit"
328.1.1.1.1.1 2kinB alignment "kinesin fragment Mutant biological_unit"
329.1.1.1.1.1 1afp alignment "Antifungal protein from aspergillus giganteus (agafp) (NMR, 40 structures)"
330.1.1.1.1.1 1apq alignment "complement protease c1r fragment"
331.1.1.1.1.1 1rfs alignment "rieske protein fragment (rieske iron-sulfur protein, risp)"
331.1.1.1.2.1 ____1rie alignment "rieske iron-sulfur protein fragment (ubiquinol-cytochrome c reductase iron-sulfur)"
331.1.1.1.3.1 ____1ndoA alignment "napthalene 1,2-dioxygenase biological_unit"
332.1.1.1.1.1 1buhB alignment "cdk2 human biological_unit ckshs1 human biological_unit"
333.1.1.1.1.1 1irp alignment "Interleukin-1 receptor antagonist protein (NMR, 12 structures)"
333.1.1.1.2.1 ____2i1b alignment "Interleukin-1Beta (IL-1Beta)"
333.1.1.1.2.1 ______2ila alignment "Interleukin-1Alpha (IL-1Alpha)"
333.1.1.1.2.2 _____1abrB alignment "Abrin-a complexed with two sugar chains"
333.1.1.1.2.2 ______1bfg alignment "Basic fibroblast growth factor mutant with cys 69 replaced by ser and cys 87 replaced by ser (c69s,C87s)"
333.1.1.1.2.2 ______1jlyA alignment "agglutinin (amaranthin, aca)"
333.1.1.1.2.3 _____1hce alignment "Hisactophilin (NMR, minimized average structure)"
333.1.1.1.2.4 _____1wba alignment "winged bean albumin 1"
333.1.1.1.2.4 ______1a8d alignment "tetanus neurotoxin fragment Mutant"
333.1.1.1.2.4 ______1avaC alignment "barley alpha-amylase 2(cv menuet) (amy2) barley alpha-amylaseSUBTILISIN INHIBITOR (basi)"
334.1.1.1.1.1 1hfeS alignment "fe-only hydrogenase (smaller subunit) biological_unit fe-only hydrogenase (larger subunit) biological_unit"
335.1.1.1.1.1 1be3F alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
336.1.1.1.1.1 1cpt alignment "Cytochrome p450-terp"
336.1.1.1.1.1 ______1phd alignment "Cytochrome p450-cam (camphor 5-monoxygenase) complex with 2-phenyl imidazole"
336.1.1.1.1.1 ______1rom alignment "cytochrome p450 (cytochrome p450nor, nitric oxide reductase)"
336.1.1.1.1.1 ______1bu7A alignment "cytochrome p450 fragment (fatty acid hydroxylase)"
337.1.1.1.1.1 1iml alignment "cysteine rich intestinal protein (crip)"
337.2.1.1.1.1 _1qli alignment "cysteine and glycine-rich protein fragment (qcrp2(lim2), zn(ii)-qcrp2(lim2))"
338.1.1.1.1.1 1lay alignment "cytomegalovirus protease (assemblin) Mutant"
338.1.1.1.1.1 ______1at3A alignment "herpes simplex virus type ii protease biological_unit"
339.1.1.1.1.1 1cfe alignment "pathogenesis-related protein p14a fragment (pathogenesis-related leaf protein 6, ethylene induced protein p1, p14)"
340.1.1.1.1.1 1b25A alignment "formaldehyde ferredoxin oxidoreductase fragment"
341.1.1.1.1.1 1b10 alignment "prion protein fragment (sha rprp90-231)"
342.1.1.1.1.1 1bi6H alignment "bromelain inhibitor vi"
343.1.1.1.1.1 1bol alignment "ribonuclease rh biological_unit"
344.1.1.1.1.1 1avqA alignment "lambda exonuclease (red alpha) Mutant biological_unit"
344.2.1.1.1.1 _1rvaA alignment "Eco rv endonuclease complexed with substrate DNA"
344.2.2.1.1.1 __1azo alignment "muth (DNA mismatch repair protein muth)"
344.2.2.2.1.1 ___3pviA alignment "pvuii endonuclease Mutant pvuii endonuclease Mutant cognate oligonucleotide cognate oligonucleotide"
345.1.1.1.1.1 2vgh alignment "vascular endothelial growth factor-165 fragment (vegf-165)"
346.1.1.1.1.1 1skz alignment "antistasin (factor xa inhibitor) Mutant"
346.2.1.1.1.1 _1bx7 alignment "hirustasin biological_unit"
347.1.1.1.1.1 1azh alignment "cellobiohydrolase i fragment (cbd) Mutant"
348.1.1.1.1.1 1erd alignment "Pheromone er-2 (NMR, 20 structures)"
348.1.1.2.1.1 ___1ery alignment "pheromone er-11 (euplomone r11)"
348.1.1.2.2.1 ____2erl alignment "mating pheromone er-1"
349.1.1.1.1.1 1koe alignment "endostatin fragment"
349.2.1.1.1.1 _1preA alignment "proaerolysin"
349.2.2.1.1.1 __2afp alignment "sea raven type ii antifreeze protein biological_unit"
349.2.2.1.2.1 ____1ixxD alignment "coagulation factors ixX-BINDING PROTEIN fragment (ixX-BP)"
349.2.2.1.2.2 _____1esl alignment "E-selectin (lectin and egf domains, residues 1 - 157) (formerly known as elam-1)"
349.2.2.1.2.2 ______1htn alignment "tetranectin fragment"
349.2.2.1.2.2 ______1lit alignment "lithostathine"
349.2.2.1.2.2 ______1rtm1 alignment "Mannose-binding protein a (clostripain fragment) (cl-mbp-a)"
349.3.1.1.1.1 _1tsg alignment "tsg-6 fragment (proteoglycan tandem repeat, ptr)"
350.1.1.1.1.1 1aj6 alignment "gyrase fragment Mutant biological_unit"
350.1.1.1.1.2 _____1yer alignment "heat shock protein 90 fragment (hsp90)"
351.1.1.1.1.1 1bk0 alignment "isopenicillin n synthase biological_unit"
352.1.1.1.1.1 1pmc alignment "proteinase inhibitor pmp-c (lmci ii)"
353.1.1.1.1.1 2ahjA alignment "nitrile hydratase (nhase) biological_unit"
354.1.1.1.1.1 1qfqB alignment "n-protein nutboxb fragment RNA (5'-r(pGpCpCpCpUpGpApApApApApGpGpGpC)-3') fragment"
355.1.1.1.1.1 1aocA alignment "coagulogen"
355.1.1.1.2.1 ____1bndA alignment "brain derived neurotrophic factor (bdnf) neurotrophin 3 (nt3)"
355.2.1.1.1.1 _1agqA alignment "glial cell-derived neurotrophic factor (gdnf) biological_unit"
355.2.1.1.2.1 ____2tgi alignment "Transforming growth factor-beta two (tgf-b2)"
355.2.1.2.1.1 ___1pdgA alignment "Platelet-derived growth factor bb"
355.2.1.2.2.1 ____1vpfA alignment "vascular endothelial growth factor fragment (vegf, vascular permeability factor, vpf) biological_unit"
355.2.1.2.3.1 ____1hcnB alignment "Human chorionic gonadotropin"
355.2.1.2.4.1 ____1hcnA alignment "Human chorionic gonadotropin"
356.1.1.1.1.1 1bbg alignment "pollen allergen 5"
357.1.1.1.1.1 1vii alignment "villin fragment (hp-36, r42-76)"
358.1.1.1.1.1 1bor alignment "transcription factor pml fragment"
359.1.1.1.1.1 1ddcA alignment "split-soret cytochrome c biological_unit"
360.1.1.1.1.1 1gc1G alignment "envelope protein gp120 fragment Mutant cd4 fragment Mutant antibody 17b fragment"
361.1.1.1.1.1 1cof alignment "cofilin"
361.1.1.1.1.2 _____1ak7 alignment "destrin"
361.1.2.1.1.1 __1svr alignment "Severin (domain 2 comprising 114 residues) (ds111m) (NMR, minimized average structure)"
361.1.2.1.2.1 ____2vil alignment "villin 14t fragment (villin domain 1, villin segment 1)"
362.1.1.1.1.1 1pyaB alignment "Pyruvoyl-dependent histidine decarboxylase (l-histidine carboxylase)"
363.1.1.1.1.1 1a1x alignment "hmtcp-1"
364.1.1.1.1.1 1dxgA alignment "desulforedoxin biological_unit"
365.1.1.1.1.1 1bm8 alignment "transcription factor mbp1 fragment (mcb (mlui cell-cyle box) binding protein)"
366.1.1.1.1.1 2leu alignment "leucocin a"
367.1.1.1.1.1 1bnkA alignment "3-methyladenine DNA glycosylase (aag, anpg, mpg) Mutant biological_unit DNA"
368.1.1.1.1.1 1nos alignment "inducible nitric oxide synthase fragment"
369.1.1.1.1.1 1tabI alignment "Trypsin complex with bowman-Birk inhibitor (AB-I)"
370.1.1.1.1.1 2occF alignment "cytochrome c oxidase (ferrocytochrome c:oxygen oxidoreductase)"
371.1.1.1.1.1 1b2nB alignment "methanol dehydrogenase (medh) biological_unit"
372.1.1.1.1.1 1cfi alignment "coagulation factor ix fragment"
373.1.1.1.1.1 1jdw alignment "l-arginine:glycine amidinotransferase fragment (transamidinase, at38) biological_unit"
374.1.1.1.1.1 2gf1 alignment "Insulin-like growth factor (NMR, minimum average structure)"
375.1.1.1.1.1 1ce3A alignment "api fragment"
376.1.1.1.1.1 1bhtA alignment "hepatocyte growth factor fragment (nk1)"
377.1.1.1.1.1 1hnr alignment "H-ns (DNA-binding domain) (NMR, minimized average structure)"
378.1.1.1.1.1 1pi2 alignment "Bowman-Birk proteinase inhibitor PI-II"
379.1.1.1.1.1 1zto alignment "potassium channel protein rck4 fragment"
380.1.1.1.1.1 1htrP alignment "Progastricsin (pepsinogen c)"
381.1.1.1.1.1 1icjA alignment "peptide deformylase (pdf) biological_unit"
382.1.1.1.1.1 1ce4A alignment "v3 loop of hiv-1 envelope protein biological_unit"
383.1.1.1.1.1 1txb alignment "toxin b (long neurotoxin)"
383.1.2.1.1.1 __1tgxA alignment "Toxin gamma (cardiotoxin)"
383.1.2.1.2.1 ____3ebx alignment "Erabutoxin b"
383.1.2.1.3.1 ____1cds alignment "Cd59 complexed with glcnac-beta-1,4-(fuc-alpha-1,6)- glcnac-beta-1 (NMR, 10 structures)"
383.1.2.1.4.1 ____1bteA alignment "activin receptor type ii fragment"
384.1.1.1.1.1 1awj alignment "itk fragment (il-2-inducible t-cell kinase) biological_unit"
385.1.1.1.1.1 4sgbI alignment "Serine proteinase b complex with the potato inhibitor PCI-1"
386.1.1.1.1.1 1fct alignment "Ferredoxin chloroplastic transit peptide sequence from the green alga (chlamydomonas reinhardtii) (NMR, 27 structures)"
387.1.1.1.1.1 1aty alignment "F1fo atp synthase subunit c (residues 9 - 26, 52 - 79) mutant with ala 67 replaced by cys (a67c) (NMR, 9 structures)"
388.1.1.1.1.1 1b0y alignment "hipip Mutant"
388.1.2.1.1.1 __1hpi alignment "High-potential iron-sulfur protein from ectothiorhodospira vacuolata"
388.1.2.1.2.1 ____1isuA alignment "High-potential iron-sulfur protein (hipip)"
389.1.1.1.1.1 1a73A alignment "intron 3 (i-ppo) encoded endonuclease (intron-encoded endonuclease i-ppoi) biological_unit DNA fragment"
390.1.1.1.1.1 6prcC alignment "photosynthetic reaction center"
391.1.1.1.1.1 1buoA alignment "plzf fragment (plzf) biological_unit"
391.1.1.1.2.1 ____1vcbB alignment "elongin b fragment elongin c fragment vhl fragment"
391.1.1.1.3.1 ____1t1dA alignment "potassium channel kv1.1 fragment Mutant biological_unit"
392.1.1.1.1.1 1npoA alignment "neurophysin ii (bnpii) oxytocin (ot)"
393.1.1.1.1.1 1bnkC alignment "3-methyladenine DNA glycosylase (aag, anpg, mpg) Mutant biological_unit DNA"
394.1.1.1.1.1 1tvs alignment "Transactivator protein (tat) (tat eiavy) (NMR, 8 structures)"
395.1.1.1.1.1 1b5eA alignment "deoxycytidylate hydroxymethylase (t4 ch) biological_unit"
395.1.1.1.1.1 ______1bkpA alignment "thymidylate synthase a biological_unit"
396.1.1.1.1.1 1mhlA alignment "myeloperoxidase"
397.1.1.1.1.1 1rip alignment "Ribosomal protein s17 (NMR, 6 structures)"
398.1.1.1.1.1 1mkcA alignment "midkine fragment"
399.1.1.1.1.1 1jsuC alignment "cyclin-dependent kinase-2 (cdk2) Mutant cyclin a fragment p27 fragment (kip1, cip2)"
400.1.1.1.1.1 1msi alignment "type iii antifreeze protein isoform hplc 12 (type iii antifreeze protein qae isoform) Mutant"
401.1.1.1.1.1 1apj alignment "fibrillin fragment"
402.1.1.1.1.1 1puc alignment "p13suc1 (p13) ec"
403.1.1.1.1.1 1eaiC alignment "elastase biological_unit chymotrypsinELASTASE ISOINHIBITOR 1 biological_unit"
404.1.1.1.1.1 1new alignment "cytochrome c551.5 (cytochrome c7, triheme cytochrome)"
404.1.1.2.1.1 ___3cyr alignment "cytochrome c3"
405.1.1.1.1.1 1zaq alignment "thrombomodulin (tm4)"
406.1.1.1.1.1 1cd3B alignment "scaffolding protein gpd capsid protein gpf spike protein gpg scaffolding protein gpb"
407.1.1.1.1.1 1adx alignment "thrombomodulin fragment (tmegf5)"
408.1.1.1.1.1 1ajj alignment "low-density lipoprotein receptor fragment (lr5)"
409.1.1.1.1.1 1aoo alignment "ag-metallothionein (ag-mt) biological_unit"
410.1.1.1.1.1 1bm4 alignment "moloney murine leukemia virus capsid protein fragment (momlv ca mhr)"
411.1.1.1.1.1 1cfh alignment "Coagulation factor ix (the gla and aromatic amino acid stack domains from residues 1 - 47) (NMR, 15 structures)"
412.1.1.1.1.1 1dmc alignment "Cd-6 metallothionein-1 (cd-6 mt) (alpha domain) (NMR, minimized average structure)"
413.1.1.1.1.1 1fre alignment "nuclear factor xnf7 fragment"
414.1.1.1.1.1 1ktx alignment "Kaliotoxin (ktx) (NMR, 11 structures)"
415.1.1.1.1.1 1mhu alignment "Cd-7 metallothionein-2 (alpha domain) (NMR)"
416.1.1.1.1.1 1ppbL alignment "Alpha-thrombin complex with d-phe-pro-arg chloromethylketone (ppack) with chloromethylketone replaced by a methylene group"
417.1.1.1.1.1 1pyaA alignment "Pyruvoyl-dependent histidine decarboxylase (l-histidine carboxylase)"
418.1.1.1.1.1 1tiv alignment "hiv-1 transactivator protein (tat protein) Mutant"
419.1.1.1.1.1 1tmf4 alignment "Theiler's murine encephalomyelitis virus coat protein (bean strain)"
420.1.1.1.1.1 1tvt alignment "Transactivator protein (tat, tat eiavy) (NMR, 6 structures)"
421.1.1.1.1.1 2bpa3 alignment "Bacteriophage phix174 capsid proteins gpf, gpg, gpj and four nucleotides"
422.1.1.1.1.1 2ltnB alignment "Pea lectin"
423.1.1.1.1.1 2mev4 alignment "Mengo encephalomyocarditis virus coat protein"
424.1.1.1.1.1 2mrb alignment "Cd-7 metallothionein-2a (beta domain) (NMR)"
425.1.1.1.1.1 2pde alignment "Dihydrolipoamide acetyltransferase (e2p) subunit of the pyruvate dehydrogenase (pdh) multienzyme complex (pyruvate decarboxylase (e1p) dihydrolipoamide dehydrogenase (e3) 43 residue binding domain) (NMR, average structure)"
426.1.1.1.1.1 2pspA alignment "porcine pancreatic spasmolytic polypeptide (psp)"
427.1.1.1.1.1 4mt2 alignment "Metallothionein isoform ii"
428.1.1.1.1.1 4rhv4 alignment "Rhinovirus 14 (HRV14)"
429.1.1.1.1.1 1bnkB alignment "3-methyladenine DNA glycosylase (aag, anpg, mpg) Mutant biological_unit DNA"
430.1.1.1.1.1 1bh7 alignment "band 3 fragment"
431.1.1.1.1.1 1bw8 alignment "ap50 fragment (mu2 adaptin) internalization signal from egfr"
432.1.1.1.1.1 1by0 alignment "hepatitis delta antigen fragment"
433.1.1.1.1.1 1be3I alignment "cytochrome bc1 complex (ubiquinol cytochrome c oxidoreductase, complex iii)"
434.1.1.1.1.1 1fhp4 alignment "polg_fmdvo fragment (fmdv)"
435.1.1.1.1.1 1rb9 alignment "rubredoxin"
436.1.1.1.1.1 1tac alignment "tat protein (transactivating regulatory protein) Mutant"
437.1.1.1.1.1 1bl1 alignment "parathyroid hormone receptor fragment"
438.1.1.1.1.1 1hev alignment "Hevein (NMR, 6 structures)"
438.1.1.1.2.1 ____9wgaA alignment "Wheat germ agglutinin (isolectin 2)"
Created Tue May 4 13:27:20 BST 1999 for dali on croma