index.shtml
 
OBO

Open all menus
Site map
Home | New | FAQ
Downloads
. . Current Ontologies
. . Current Annotations
. . GO Database
Documentation
GO Tools
. . Available tools
. . Submit New Tools
. . . . Tools details
Mappings to GO
Archives
About GO
Terms of Use
Contact GO
Report Errors
Search
Terms/Annotations
Search Site

GO Software: More details on individual software packages

GO Editors

Program Written by Platform Language Open Source Free System requirements url Web-based?
DAG-Edit unix/
Linux/
Mac/
Windows		 Java 1.2 Yes Yes No

GO Browsers

Program Written by Platform Language Open Source Free System requirements Web-based?
AmiGO
from BDGP		 unix/
Linux/
Mac/
Windows		 Source Yes Yes
MGI
GO Browser 		unix Python v 1.4,
custom C extensions
for sybase access		 No Yes Yes
QuickGO
at EBI 		unix/
Linux/
Mac/
Windows		 Java 1.4 Yes Free Yes
EP
GO Browser
GoFish unix/
Linux/
Mac/
Windows		 Java2 v. 1.3 No Yes GoFish
System Requirements		 Yes
GenNav Sun/Solaris only Perl (+ GraphViz) No Yes Yes
GeneOntology
@RZPD		 unix/
Linux/
Mac/
Windows		 Perl/JavaScript No Yes Yes
ProToGO Run on FreeBSD, access
on unix/
Linux/
Mac/
Windows		 CGI-Perl Yes Yes Yes
PANDORA Run on FreeBSD, access
on unix/
Linux/
Mac/
Windows		 PHP Yes Yes Yes
CGAP
GO Browser		 Source code
GoBrowser unix/
Linux/
Mac/
Windows		 Perl/Tk Yes Yes No
eGOn unix/
Linux/
Mac/
Windows		 PHP Yes Yes Yes
TAIR Keyword Browser unix jsp/java and javascript No Yes, to academic institutions. Yes

Other GO tools

Program Written by Platform Language Open Source Free System requirements Web-based?
GO Term
Finder		 unix/
Linux/
Mac/
Windows		 Perl Yes Yes Command line
MAPPFinder Windows only Visual Basic Yes Yes No
FatiGO unix/
linux		 C and perl Yes Yes Yes
GoMiner unix/
Linux/
Mac/
Windows		 Java No Yes System requirements No (GUI or
command line)
MatchMiner unix/
Linux/
Mac/
Windows		 Java No Yes System requirements Yes (also
command line)
OntoGate unix/
Linux/
Mac/
Windows		 Python, and uses blastall Program Yes Yes Yes
Onto-Express unix/
Linux/
Mac/
Windows		 Java 1.2 No, but source can be shared Yes Yes
Onto-Design unix/
Linux/
Mac/
Windows		 Java 1.2 No, but source can be shared Yes Yes
Onto-Compare unix/
Linux/
Mac/
Windows		 Java 1.2 No, but source can be shared Yes Yes
Onto-Translate unix/
Linux/
Mac/
Windows		 Java 1.2 No, but source can be shared Yes Yes
Onto-Miner unix/
Linux/
Mac/
Windows		 Java 1.2 No, but source can be shared Yes Yes
GOblet unix/
Linux/
Mac/
Windows		 perl
e-mail address to
get source		 Yes Yes
EASE Windows perl No Yes to academic and non-profit Yes
DAVID web-server java No Yes Yes
NetAffx
Gene Ontology
Mining Tool 		Windows No Yes Yes
GARBAN unix/
Linux/
Mac/
Windows		 PHP, JavaScript, PERL and C++ The source code to install GARBAN locally is not publicly available. Institutions which may require it, can contact: 'Garban' at 'ceit.es' Yes Yes
FUNSPEC Linux C++ No Yes Yes
GeneMerge unix/
Linux/
Mac/
Windows		 Perl source Yes GeneMerge
System requirements		 No
GoSurfer Windows 2000/NT/XP Microsoft Visual C++ source Yes No

General GO tools

Program Written by Platform Language Open Source Free System requirements Web-based?
Manatee unix/Linux Written in Perl and run under the CGI area of a web server, such as Apache. source code Yes Manatee
system requirements		 Yes
PubSearch unix/Linux/Mac
(Platforms supporting Java Servlets environment)		 Core written in Java, with some support scripts in Perl, and Python. Yes Yes Yes
SOURCE Solaris/Oracle Perl No Yes Yes
Genes2Diseases

Programs with closed source and licence fee

Program Written by Platform Language System requirements Web-based?
Spotfire Windows only Visual Basic, JavaScript Spotfire
system requirements		 No


 last modified August-2003 Report problems with this website to webmaster@geneontology.org
For problems with Netscape 4, please upgrade to Netscape 7