PFAM : Multiple alignments and profile HMMs of protein domains RELEASE 4.1 ________________________________ The Pfam Consortium Sanger Centre (UK) Washington University (USA) Karolinska Institute (Sweden) Erik Sonnhammer; Karolinska Institute Alex Bateman, Ewan Birney, Kevin Howe, Richard Durbin; Sanger Centre Sean Eddy, Ajay Khanna; Washington University pfam-admin@sanger.ac.uk ________________________________ WWW: (UK:) http://www.sanger.ac.uk/Software/Pfam/ (Sweden:) http://kisac.cgr.ki.se/Pfam/ (USA:) http://pfam.wustl.edu/ FTP directory: 00README This file relnotes.txt Notes to the latest release. userman.txt Definition of Pfam annotation formats. diff Summary of changes from 4.0 to 4.1 release. Pfam-A.full.Z Curated Pfam "full" alignments Pfam-A.seed.Z Curated Pfam "seed" alignments Pfam.Z HMM library built from Pfam-A seeds PfamFrag.Z Auxiliary HMM library for fragment (Smith/Waterman) searches Pfam-B.Z Low quality Pfam/Domainer automatic cluster alignments swisspfam.Z The domain organisation of Swissprot/TrEMBL entries in Pfam. pfamseq.gz Nonredundant sequence database that Pfam 4.1 is based on COPYRIGHT Copyright and distribution restrictions GNULICENSE The GNU Library General Public License