###standalone version 2.1 of AnnoLnc###
* Installaion guide
    > download AnnoLnc2 standalone version from http://annolnc.gao-lab.org/download.php   
    > uncompress package by `tar -zxvf annolnc_v2.1.tar.gz`   
    > install annoconda (https://www.anaconda.com/) or miniconda (https://docs.conda.io/en/latest/miniconda.html)   
    > build enviroment   
	```
	cd annolnc_v2.1
	conda env create -f AnnoLnc2.yaml
	conda activate AnnoLnc2
	```
* Quick start
    > run `bash annolnc.sh -h` for help messages   
    > run `bash annolnc.sh -t hg38` for running AnnoLnc2 on predefined testing sequences of huamn   
    > run `bash annolnc.sh -t mm10` for running AnnoLnc2 on predefined testing sequences of mouse   
* Download full dataset
    > The datasets of some modules (e.g., expression, miRNA_interaction, protein_interaction, evolution, and repeat_elements) are too big, so were not incorporated in this package. Please download full datasets from our ftp server (ftp://ftp.cbi.pku.edu.cn/pub/AnnoLnc2), and put data under corresponding directory of each module. For instance, the directory of human expression data is `annolnc_v2.1/data/hg38/expression`.